No datasets match
  1. a4Base::nlcvTT
    Data to Demonstrate nlcv and Co Functions
    rda| rds
    nlcv
  2. ABSSeq::simuN5
    Simulated study with random outliers
    json| rda| rds
    list
  3. acde::phytophthora
    Gene Expression Data for Tomato Plants Inoculated with _Phytophthora infestans_
    csv| json| rda| rds
    list
  4. ACE::copyNumbersSegmented
    Segmented data of two tumor samples
    rda| rds
    QDNAseqCopyNumbers
  5. aCGH::colorectal
    Colorectal array CGH dataset
    rda| rds
    aCGH
  6. aCGH::ex.acgh.hmm
    Class aCGH
    csv| json| rda| rds
    list
  7. ACME::example.agff
    An example ACME data structure of class ACMESet
    rda| rds
    ACMESet
  8. ADaCGH2::inputEx
    A fictitious aCGH data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 9
  9. ADaCGH2::inputEx-sp
    A fictitious aCGH data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 9
  10. ADAM::ExpressionAedes
    Aedes aegypti RNA-seq data expression
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34 x 5
  11. ADAM::KeggPathwaysAedes
    Relation between Aedes aegypti genes and KEGG pathways as ADAM input
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 3
  12. ADAMgui::DiffAedes
    Aedes aegypti RNA-seq differential expression data example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1973 x 3
  13. ADAMgui::GeneFunctionAedes
    Relation between Aedes aegypti genes and KEGG pathways
    csv| xlsx| json| ndjson| rda| rds
    data.frame|782 x 2
  14. ADAMgui::ResultAnalysisAedes
    Result from an example of ADAM Aedes aegypti analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|87 x 22
  15. ADAPT::ecc_plaque
    Plaque samples from early childhood dental caries studies
    rda| rds
    phyloseq
  16. ADAPT::ecc_saliva
    Saliva samples from early childhood dental caries studies
    rda| rds
    phyloseq
  17. ADImpute::demo_data
    Small dataset for example purposes
    rda| rds
    dgCMatrix
  18. ADImpute::demo_net
    Small regulatory network for example purposes
    csv| json| rda| rds
    matrix|50 x 720
  19. ADImpute::demo_sce
    Small dataset for example purposes
    rda| rds
    SingleCellExperiment
  20. ADImpute::network.coefficients
    Transcriptome wide gene regulatory network
    rda| rds
    dgCMatrix
  21. ADImpute::transcript_length
    Table for transcript length calculations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33670 x 2
  22. adSplit::golubKEGGSplits
    Examplar splitSet
    rda| rds
    splitSet
  23. AffiXcan::exprMatrix
    Expression data of two genes for 229 individuals
    rda| rds
    SummarizedExperiment
  24. AffiXcan::regionAssoc
    Associations between regulatory regions and expressed genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 2
  25. AffiXcan::trainingCovariates
    Covariates of the population structure for 229 individuals
    csv| xlsx| json| ndjson| rda| rds
    data.frame|229 x 3
  26. affy::cdfenv.example
    Example cdfenv
    rda| rds
    environment
  27. affy::mapCdfName
    Clean Affymetrix's CDF name
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 3
  28. affy::SpikeIn
    SpikeIn Experiment Data: ProbeSet Example
    rda| rds
    ProbeSet
  29. affycomp::dilution.phenodata
    Phenotypic Information for Dilution Study
    rda| rds
    AnnotatedDataFrame
  30. affycomp::hgu133a.spikein.phenodata
    phenotypic information for HGU133A spike in study
    rda| rds
    AnnotatedDataFrame
  31. affycomp::hgu133a.spikein.xhyb
    Cross hybridizers
    json| rda| rds
    list
  32. affycomp::mas5.assessment
    Example of the result of assessments
    json| rda| rds
    list
  33. affycomp::spikein.phenodata
    phenotypic information for spike in study
    rda| rds
    AnnotatedDataFrame
  34. affycompData::lw.sd.assessment
    An example of the result of an SD assessment
    json| rda| rds
    list
  35. affycompData::mas5.assessment
    Examples of the result of assessments
    json| rda| rds
    list
  36. affycompData::mas5.assessment.133
    Examples of the result of assessments
    json| rda| rds
    list
  37. affycompData::mas5.assessment2
    Examples of the result of assessments
    rda| rds
    list
  38. affycompData::mas5.assessment2.133
    Examples of the result of assessments
    rda| rds
    list
  39. affycompData::rma.assessment
    Examples of the result of assessments
    json| rda| rds
    list
  40. affycompData::rma.assessment.133
    Examples of the result of assessments
    json| rda| rds
    list
  41. affycompData::rma.assessment2
    Examples of the result of assessments
    rda| rds
    list
  42. affycompData::rma.assessment2.133
    Examples of the result of assessments
    rda| rds
    list
  43. affycompData::rma.sd.assessment
    An example of the result of an SD assessment
    json| rda| rds
    list
  44. affydata::Dilution
    AffyBatch instance Dilution
    rda| rds
    AffyBatch
  45. Affyhgu133A2Expr::Affyhgu133A2Exprtab
    Reference table for Affyhgu133A2Expr gene expression compendium
    csv| xlsx| json| ndjson| rda| rds
    data.frame|313 x 3
  46. Affyhgu133aExpr::Affyhgu133aExprtab
    Reference table for Affyhgu133aExpr gene expression compendium
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11778 x 3
  47. Affyhgu133Plus2Expr::Affyhgu133Plus2Exprtab
    Reference table for Affyhgu133Plus2Expr gene expression compendium
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5153 x 3
  48. Affymoe4302Expr::Affymoe4302Exprtab
    Reference table for Affymoe4302Expr gene expression compendium
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9444 x 3
  49. AGDEX::agdex.res
    Saved result returned by agdex()
    json| rda| rds
    list
  50. AGDEX::gset.data
    a sample gene-set data
    rda| rds
    GeneSetCollection
  51. AGDEX::human.data
    Sample ExpressionSet object of human data
    rda| rds
    ExpressionSet
  52. AGDEX::map.data
    Probe-set Mapping Data
    json| rda| rds
    list
  53. AGDEX::mouse.data
    Mouse Data
    rda| rds
    ExpressionSet
  54. aggregateBioVar::small_airway
    Small Airway 'SingleCellExperiment' object
    rda| rds
    SingleCellExperiment
  55. AgiMicroRna::dd.micro
    data example (uRNAList)
    rda| rds
    uRNAList
  56. AgiMicroRna::ddPROC
    Processed miRNA data (uRNAList)
    rda| rds
    uRNAList
  57. AgiMicroRna::targets.micro
    Example of target file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 4
  58. AIMS::AIMSmodel
    The AIMS model
    rda| rds
    list
  59. AIMS::mcgillExample
    Sample of a breast cancer gene expression dataset generated at McGill University
    json| rda| rds
    list
  60. airway::airway
    Airway smooth muscle cells
    rda| rds
    RangedSummarizedExperiment
  61. airway::gse
    Airway smooth muscle cells - Salmon quantification
    rda| rds
    RangedSummarizedExperiment
  62. ALDEx2::selex
    Selection-based differential sequence variant abundance dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1600 x 14
  63. ALDEx2::synth2
    Synthetic asymmetric dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 20
  64. ALL::ALL
    Acute Lymphoblastic Leukemia Data from the Ritz Laboratory
    rda| rds
    ExpressionSet
  65. AllelicImbalance::ASEset
    ASEset objects
    rda| rds
    ASEset
  66. AllelicImbalance::ASEset.sim
    ASEset.sim object
    rda| rds
    ASEset
  67. AllelicImbalance::genomatrix
    genomatrix object
    csv| json| rda| rds
    matrix|3 x 20
  68. AllelicImbalance::GRvariants
    GRvariants object
    rda| rds
    GRanges
  69. AllelicImbalance::reads
    reads object
    rda| rds
    GAlignmentsList
  70. ALLMLL::MLL.A
    AffyBatch instances MLL.A and MLL.B
    rda| rds
    AffyBatch
  71. ALLMLL::MLL.B
    AffyBatch instances MLL.A and MLL.B
    rda| rds
    AffyBatch
  72. AlpsNMR::hmdb
    The Human Metabolome DataBase multiplet table
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|2629 x 12
  73. AlpsNMR::HMDB_blood
    The Human Metabolome DataBase multiplet table: blood metabolites normally found in NMR-based metabolomics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|224 x 8
  74. AlpsNMR::HMDB_cell
    The Human Metabolome DataBase multiplet table: cell metabolites normally found in NMR-based metabolomics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|232 x 6
  75. AlpsNMR::HMDB_urine
    The Human Metabolome DataBase multiplet table: urine metabolites normally found in NMR-based metabolomics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1266 x 9
  76. AlpsNMR::Parameters_blood
    to rDolphin
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 2
  77. AlpsNMR::Parameters_cell
    Parameters for cell samples profiling
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 2
  78. AlpsNMR::Parameters_urine
    Parameters for urine samples profiling
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 2
  79. AlpsNMR::ROI_blood
    ROIs for blood (plasma/serum) samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35 x 12
  80. AlpsNMR::ROI_cell
    ROIs for cell samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44 x 12
  81. AlpsNMR::ROI_urine
    ROIs for urine samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|59 x 12
  82. altcdfenvs::cdfenvEx
    CdfEnvAffy
    rda| rds
    CdfEnvAffy
  83. AMARETTO::BatchData
    BatchData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23263 x 3
  84. AMARETTO::Driver_Genes
    Driver_Genes
    json| rda| rds
    list
  85. AMARETTO::MsigdbMapping
    MsigdbMapping
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17810 x 3
  86. AMARETTO::ProcessedDataLIHC
    ProcessedDataLIHC
    json| rda| rds
    list
  87. AmpAffyExample::AmpData
    AffyBatch instance with six arrays from amplication experiment
    rda| rds
    AffyBatch
  88. anansi::ec2cpd
    Use linking data from the KEGG database.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33252 x 2
  89. anansi::ec2ko
    Use linking data from the KEGG database.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9792 x 2
  90. anansi::FMT_KOs
    Snippet of the CLR-transformed inferred functional data from the FMT Aging study.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6468 x 36
  91. anansi::FMT_metab
    Snippet of the CLR-transformed hippocampal metabolomics data from the FMT Aging study.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 36
  92. anansi::FMT_metadata
    Snippet of the metadata from the FMT Aging study.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 2
  93. anansi::krebs
    Simplified snippet of the Krebs cycle
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 2
  94. Anaquin::RnaQuinGeneMixture
    RnaQuin mixture (gene level)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|78 x 4
  95. Anaquin::RnaQuinIsoformMixture
    RnaQuin mixture (isoform level)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|164 x 4
  96. Anaquin::UserGuideData_5.4.5.1
    Section 5.4.5.1 Assembly Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|164 x 2
  97. Anaquin::UserGuideData_5.4.6.3
    Gene expression (RnaQuin)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|73 x 4
  98. Anaquin::UserGuideData_5.6.3
    Differential expression (RnaQuin)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|78 x 7
  99. ANCOMBC::QMP
    Quantitative Microbiome Project data
    csv| json| rda| rds
    matrix|106 x 91
  100. annaffy::aafExpr
    Sample ExpressionSet used for demonstration purposes
    rda| rds
    ExpressionSet
  101. annotate::hgByChroms
    A dataset to show the human genome base pair locations per chromosome.
    json| rda| rds
    list
  102. annotate::hgCLengths
    A dataset which contains the lengths (in base pairs) of the human chromosomes.
    json| rda| rds
    numeric
  103. annotate::hgu95Achroloc
    Annotation data for the Affymetrix HGU95A GeneChip
    rda| rds
    environment
  104. annotate::hgu95Achrom
    Annotation data for the Affymetrix HGU95A GeneChip
    rda| rds
    environment
  105. annotate::hgu95All
    Annotation data for the Affymetrix HGU95A GeneChip
    rda| rds
    environment
  106. annotate::hgu95AProbLocs
    chromLocation instance hgu95AProbLocs, an example of a chromLocation object
    rda| rds
    chromLocation
  107. annotate::hgu95Asym
    Annotation data for the Affymetrix HGU95A GeneChip
    rda| rds
    environment
  108. annotationTools::annot_HGU133A
    annot\_HGU133A
    csv| xlsx| json| ndjson| rda| rds
    data.frame|188 x 43
  109. annotationTools::ortho
    ortho
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 4
  110. annotationTools::table_human
    table\_human
    csv| xlsx| json| ndjson| rda| rds
    data.frame|188 x 12
  111. annotationTools::table_mouse
    table\_mouse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 8
  112. annotatr::annotations
    example_annotations data
    rda| rds
    GRanges
  113. anota::anotaDataP
    Sample data set for anota
    csv| json| rda| rds
    matrix|1000 x 6
  114. anota::anotaDataT
    Sample data set for anota
    csv| json| rda| rds
    matrix|1000 x 6
  115. anota::anotaPhenoVec
    Sample data set for anota
    json| rda| rds
    character
  116. anota2seq::anota2seq_data_P
    Sample data set for anota2seq
    csv| json| rda| rds
    matrix|10748 x 8
  117. anota2seq::anota2seq_data_T
    Sample data set for anota2seq
    csv| json| rda| rds
    matrix|10748 x 8
  118. anota2seq::anota2seq_pheno_vec
    Sample data set for anota2seq
    json| rda| rds
    character
  119. antiProfilesData::apColonData
    Curated dataset of many colon normal and cancer samples on Affymetrix hgu133plus2 expression arrays.
    rda| rds
    ExpressionSet
  120. AnVILBilling::demo_rec
    a demonstration avReckoning object
    rda| rds
    avReckoning
  121. apComplex::apEX
    Example data set for apComplex package
    csv| json| rda| rds
    matrix|4 x 8
  122. apComplex::apEXG
    Example data set for apComplex package
    rda| rds
    graphNEL
  123. apComplex::gavin06FilteredEstimates
    AP-MS data complex estimates
    json| rda| rds
    list
  124. apComplex::gavinBP2006
    Tandem Affinity Purification (TAP) Data from Gavin et al. (2006)
    csv| json| rda| rds
    matrix|1752 x 2551
  125. apComplex::HMSPCI
    High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
    csv| json| rda| rds
    matrix|493 x 1578
  126. apComplex::HMSPCIgraph
    High-Throughput Mass Spectromic Protein Complex Identification (HMS-PCI) Data from Ho, et al. (2002)
    rda| rds
    graphNEL
  127. apComplex::Krogan
    High-Definition Macromolecular Composition of Yeast RNA-Processing Complexes (2004)
    csv| json| rda| rds
    matrix|153 x 485
  128. apComplex::krogan06FilteredEstimates
    AP-MS data complex estimates
    json| rda| rds
    list
  129. apComplex::kroganBPMat2006
    Tandem Affinity Purification (TAP) Data from Krogan et al. (2006)
    csv| json| rda| rds
    matrix|2264 x 5361
  130. apComplex::MBMEcHMSPCI
    HMSPCI data complex estimates
    csv| json| rda| rds
    matrix|397 x 242
  131. apComplex::MBMEcKrogan
    Krogan data complex estimates
    csv| json| rda| rds
    matrix|200 x 82
  132. apComplex::MBMEcTAP
    TAP data complex estimates
    csv| json| rda| rds
    matrix|669 x 260
  133. apComplex::SBMHcHMSPCI
    HMSPCI data complex estimates
    csv| json| rda| rds
    matrix|1578 x 437
  134. apComplex::SBMHcTAP
    TAP data complex estimates
    csv| json| rda| rds
    matrix|1364 x 325
  135. apComplex::TAP
    Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
    csv| json| rda| rds
    matrix|455 x 1364
  136. apComplex::TAPgraph
    Tandem Affinity Purification (TAP) Data from Gavin et al. (2002)
    rda| rds
    graphNEL
  137. apComplex::UnRBBcHMSPCI
    HMSPCI data complex estimates
    csv| json| rda| rds
    matrix|1578 x 329
  138. apComplex::UnRBBcTAP
    TAP data complex estimates
    csv| json| rda| rds
    matrix|1364 x 123
  139. apComplex::yNameTAP
    TAP data complex estimates using standard gene names
    csv| json| rda| rds
    matrix|1363 x 260
  140. apComplex::yTAP
    yTAP Complexes published Gavin, et al. (2002).
    csv| json| rda| rds
    list
  141. arrayMvout::afxsubDEG
    Multivariate outlier detection based on PCA of QA statistics
    json| rda| rds
    list
  142. arrayMvout::fig3map
    Multivariate outlier detection based on PCA of QA statistics
    json| rda| rds
    numeric
  143. arrayMvout::ilmQA
    Multivariate outlier detection based on PCA of QA statistics
    csv| json| rda| rds
    matrix|19 x 4
  144. arrayMvout::itnQA
    Multivariate outlier detection based on PCA of QA statistics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|507 x 9
  145. arrayMvout::maqcQA
    Multivariate outlier detection based on PCA of QA statistics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|120 x 11
  146. arrayMvout::s12cDEG
    Multivariate outlier detection based on PCA of QA statistics
    json| rda| rds
    list
  147. arrayMvout::spikQA
    Multivariate outlier detection based on PCA of QA statistics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 9
  148. arrayQuality::HsReferenceDB
    Reference slides for Mouse oligos hybridizations
    csv| json| rda| rds
    matrix|15 x 27
  149. arrayQuality::MmDEGenes
    Known DE genes for Mouse quality hybridizations.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|121 x 9
  150. arrayQuality::MmReferenceDB
    Reference slides for Mouse oligos hybridizations
    csv| json| rda| rds
    matrix|15 x 16
  151. ARRmData::betaMatrix
    Example of a matrix of Beta values from the Illumina 450k array
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485577 x 36
  152. ARRmData::greenControlMatrix
    Example of a matrix containing the green negative control probes from the Illumina 450k array
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 36
  153. ARRmData::redControlMatrix
    Example of a matrix containing the red negative control probes from the Illumina 450k array
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 36
  154. ARRmData::sampleNames
    An example of sample names for the Illumina 450k array
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 1
  155. ARRmNormalization::ProbesType
    Probe Design information for the 450k methylation assay
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485577 x 2
  156. artMS::artms_config
    artMS configuration template
    json| rda| rds
    list
  157. artMS::artms_data_corum_mito_database
    CORUM Protein Complexes database use for complex enrichment analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3616 x 20
  158. artMS::artms_data_pathogen_LPN
    LPN PATHOGEN: Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) UNIPROT IDS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2930 x 1
  159. artMS::artms_data_pathogen_TB
    TB PATHOGEN: Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman) UNIPROTS IDS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4222 x 1
  160. artMS::artms_data_ph_config
    artMS configuration for the available PH dataset
    json| rda| rds
    list
  161. artMS::artms_data_ph_contrast
    Contrast example for the PH dataset
    json| rda| rds
    character
  162. artMS::artms_data_ph_evidence
    Evidence file example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5004 x 36
  163. artMS::artms_data_ph_keys
    Keys File Example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 5
  164. artMS::artms_data_ph_msstats_modelqc
    MSstats modelQC example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24162 x 13
  165. artMS::artms_data_ph_msstats_results
    MSstats results example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3413 x 11
  166. artMS::artms_data_randomDF
    Random data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 10
  167. ASAFE::adm_ancestries_test
    Ancestries of 250 admixed individuals at 6 SNPs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 0
  168. ASAFE::adm_genotypes_test
    Genotypes of 250 admixed individuals at 6 markers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 0
  169. ASGSCA::B0
    Matrix indicating connections between the latent variables for QCAHS data.
    csv| json| rda| rds
    matrix|28 x 28
  170. ASGSCA::GenPhen
    Dataset to test GSCAestim and GSCA functions.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|999 x 8
  171. ASGSCA::QCAHS
    Dataset used in the vignette.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1707 x 49
  172. ASGSCA::ResQCAHS
    A list containing the results obtained for the QCAHS dataset.
    json| rda| rds
    list
  173. ASGSCA::W0
    Matrix indicating connections between the observed variables and the latent variables for QCAHS data.
    csv| json| rda| rds
    matrix|49 x 28
  174. AshkenazimSonChr21::SonVariantsChr21
    Annotated variants on the chromosome 21, human genome 19, son genome
    csv| xlsx| json| ndjson| rda| rds
    data.frame|94527 x 15
  175. ASICS::pure_library
    Pure spectra library
    rda| rds
    PureLibrary
  176. AssessORFData::AP1_PreSaved_DataMapObj
    'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
    rda| rds
    Assessment
  177. AssessORFData::AP1_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
    rda| rds
    Assessment
  178. AssessORFData::AP1_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
    rda| rds
    Assessment
  179. AssessORFData::AP1_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
    rda| rds
    Assessment
  180. AssessORFData::AP1_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Streptococcus pyogenes_ strain AP1
    rda| rds
    Assessment
  181. AssessORFData::AssessORF_StrainIDs
    Vector of strain IDs used in the package
    json| rda| rds
    character
  182. AssessORFData::ATCC11842_PreSaved_DataMapObj
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
    rda| rds
    Assessment
  183. AssessORFData::ATCC11842_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
    rda| rds
    Assessment
  184. AssessORFData::ATCC11842_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
    rda| rds
    Assessment
  185. AssessORFData::ATCC11842_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
    rda| rds
    Assessment
  186. AssessORFData::ATCC11842_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _bulgaricus_ strain ATCC 11842
    rda| rds
    Assessment
  187. AssessORFData::ATCC13032_PreSaved_DataMapObj
    'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
    rda| rds
    Assessment
  188. AssessORFData::ATCC13032_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
    rda| rds
    Assessment
  189. AssessORFData::ATCC13032_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
    rda| rds
    Assessment
  190. AssessORFData::ATCC13032_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
    rda| rds
    Assessment
  191. AssessORFData::ATCC13032_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Corynebacterium glutamicum_ strain ATCC 13032
    rda| rds
    Assessment
  192. AssessORFData::ATCC17978_PreSaved_DataMapObj
    'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
    rda| rds
    Assessment
  193. AssessORFData::ATCC17978_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
    rda| rds
    Assessment
  194. AssessORFData::ATCC17978_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
    rda| rds
    Assessment
  195. AssessORFData::ATCC17978_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
    rda| rds
    Assessment
  196. AssessORFData::ATCC17978_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Acinetobacter baumannii_ strain ATCC 17978
    rda| rds
    Assessment
  197. AssessORFData::ATCC700084_PreSaved_DataMapObj
    'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
    rda| rds
    Assessment
  198. AssessORFData::ATCC700084_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
    rda| rds
    Assessment
  199. AssessORFData::ATCC700084_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
    rda| rds
    Assessment
  200. AssessORFData::ATCC700084_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
    rda| rds
    Assessment
  201. AssessORFData::ATCC700084_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Mycobacterium smegmatis_ strain ATCC 700084
    rda| rds
    Assessment
  202. AssessORFData::BW25113_PreSaved_DataMapObj
    'Assessment' Objects for _Escherichia coli_ strain BW25113
    rda| rds
    Assessment
  203. AssessORFData::BW25113_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Escherichia coli_ strain BW25113
    rda| rds
    Assessment
  204. AssessORFData::BW25113_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Escherichia coli_ strain BW25113
    rda| rds
    Assessment
  205. AssessORFData::BW25113_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Escherichia coli_ strain BW25113
    rda| rds
    Assessment
  206. AssessORFData::BW25113_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Escherichia coli_ strain BW25113
    rda| rds
    Assessment
  207. AssessORFData::CCMP1375_PreSaved_DataMapObj
    'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
    rda| rds
    Assessment
  208. AssessORFData::CCMP1375_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
    rda| rds
    Assessment
  209. AssessORFData::CCMP1375_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
    rda| rds
    Assessment
  210. AssessORFData::CCMP1375_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
    rda| rds
    Assessment
  211. AssessORFData::CCMP1375_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Prochlorococcus marinus_ subsp. _marinus_ strain CCMP1375
    rda| rds
    Assessment
  212. AssessORFData::CECT5344_PreSaved_DataMapObj
    'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
    rda| rds
    Assessment
  213. AssessORFData::CECT5344_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
    rda| rds
    Assessment
  214. AssessORFData::CECT5344_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
    rda| rds
    Assessment
  215. AssessORFData::CECT5344_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
    rda| rds
    Assessment
  216. AssessORFData::CECT5344_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Pseudomonas pseudoalcaligenes_ strain CECT 5344
    rda| rds
    Assessment
  217. AssessORFData::CNRZ327_PreSaved_DataMapObj
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
    rda| rds
    Assessment
  218. AssessORFData::CNRZ327_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
    rda| rds
    Assessment
  219. AssessORFData::CNRZ327_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
    rda| rds
    Assessment
  220. AssessORFData::CNRZ327_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
    rda| rds
    Assessment
  221. AssessORFData::CNRZ327_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Lactobacillus delbrueckii_ subsp. _lactis_ strain LBCNRZ327_V11
    rda| rds
    Assessment
  222. AssessORFData::COH1_PreSaved_DataMapObj
    'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
    rda| rds
    Assessment
  223. AssessORFData::COH1_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
    rda| rds
    Assessment
  224. AssessORFData::COH1_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
    rda| rds
    Assessment
  225. AssessORFData::COH1_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
    rda| rds
    Assessment
  226. AssessORFData::COH1_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Streptococcus agalactiae_ strain COH1
    rda| rds
    Assessment
  227. AssessORFData::D_UW_3_CX_PreSaved_DataMapObj
    'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
    rda| rds
    Assessment
  228. AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
    rda| rds
    Assessment
  229. AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
    rda| rds
    Assessment
  230. AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
    rda| rds
    Assessment
  231. AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Chlamydia trachomatis_ strain D/UW-3/CX
    rda| rds
    Assessment
  232. AssessORFData::EGD_e_PreSaved_DataMapObj
    'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
    rda| rds
    Assessment
  233. AssessORFData::EGD_e_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
    rda| rds
    Assessment
  234. AssessORFData::EGD_e_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
    rda| rds
    Assessment
  235. AssessORFData::EGD_e_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
    rda| rds
    Assessment
  236. AssessORFData::EGD_e_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Listeria monocytogenes_ strain EGD-e
    rda| rds
    Assessment
  237. AssessORFData::H37Rv_PreSaved_DataMapObj
    'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
    rda| rds
    Assessment
  238. AssessORFData::H37Rv_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
    rda| rds
    Assessment
  239. AssessORFData::H37Rv_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
    rda| rds
    Assessment
  240. AssessORFData::H37Rv_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
    rda| rds
    Assessment
  241. AssessORFData::H37Rv_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Mycobacterium tuberculosis_ strain H37Rv
    rda| rds
    Assessment
  242. AssessORFData::HG001_PreSaved_DataMapObj
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
    rda| rds
    Assessment
  243. AssessORFData::HG001_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
    rda| rds
    Assessment
  244. AssessORFData::HG001_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
    rda| rds
    Assessment
  245. AssessORFData::HG001_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
    rda| rds
    Assessment
  246. AssessORFData::HG001_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain HG001
    rda| rds
    Assessment
  247. AssessORFData::Houston_1_PreSaved_DataMapObj
    'Assessment' Objects for _Bartonella henselae_ strain Houston-1
    rda| rds
    Assessment
  248. AssessORFData::Houston_1_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Bartonella henselae_ strain Houston-1
    rda| rds
    Assessment
  249. AssessORFData::Houston_1_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Bartonella henselae_ strain Houston-1
    rda| rds
    Assessment
  250. AssessORFData::Houston_1_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Bartonella henselae_ strain Houston-1
    rda| rds
    Assessment
  251. AssessORFData::Houston_1_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Bartonella henselae_ strain Houston-1
    rda| rds
    Assessment
  252. AssessORFData::Il1403_PreSaved_DataMapObj
    'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
    rda| rds
    Assessment
  253. AssessORFData::Il1403_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
    rda| rds
    Assessment
  254. AssessORFData::Il1403_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
    rda| rds
    Assessment
  255. AssessORFData::Il1403_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
    rda| rds
    Assessment
  256. AssessORFData::Il1403_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Lactococcus lactis_ subsp. _lactis_ strain Il1403
    rda| rds
    Assessment
  257. AssessORFData::K_12_MG1655_PreSaved_DataMapObj
    'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
    rda| rds
    Assessment
  258. AssessORFData::K_12_MG1655_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
    rda| rds
    Assessment
  259. AssessORFData::K_12_MG1655_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
    rda| rds
    Assessment
  260. AssessORFData::K_12_MG1655_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
    rda| rds
    Assessment
  261. AssessORFData::K_12_MG1655_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Escherichia coli_ strain K-12 substrain MG1655
    rda| rds
    Assessment
  262. AssessORFData::LAL14_1_PreSaved_DataMapObj
    'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
    rda| rds
    Assessment
  263. AssessORFData::LAL14_1_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
    rda| rds
    Assessment
  264. AssessORFData::LAL14_1_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
    rda| rds
    Assessment
  265. AssessORFData::LAL14_1_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
    rda| rds
    Assessment
  266. AssessORFData::LAL14_1_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Sulfolobus islandicus_ strain LAL14/1
    rda| rds
    Assessment
  267. AssessORFData::MG1363_PreSaved_DataMapObj
    'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
    rda| rds
    Assessment
  268. AssessORFData::MG1363_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
    rda| rds
    Assessment
  269. AssessORFData::MG1363_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
    rda| rds
    Assessment
  270. AssessORFData::MG1363_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
    rda| rds
    Assessment
  271. AssessORFData::MG1363_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Lactococcus lactis_ subsp. _cremoris_ strain MG1363
    rda| rds
    Assessment
  272. AssessORFData::MGAS5005_PreSaved_DataMapObj
    'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
    rda| rds
    Assessment
  273. AssessORFData::MGAS5005_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
    rda| rds
    Assessment
  274. AssessORFData::MGAS5005_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
    rda| rds
    Assessment
  275. AssessORFData::MGAS5005_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
    rda| rds
    Assessment
  276. AssessORFData::MGAS5005_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Streptococcus pyogenes_ strain MGAS5005
    rda| rds
    Assessment
  277. AssessORFData::NCIB_3610_PreSaved_DataMapObj
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
    rda| rds
    Assessment
  278. AssessORFData::NCIB_3610_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
    rda| rds
    Assessment
  279. AssessORFData::NCIB_3610_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
    rda| rds
    Assessment
  280. AssessORFData::NCIB_3610_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
    rda| rds
    Assessment
  281. AssessORFData::NCIB_3610_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain NCIB 3610
    rda| rds
    Assessment
  282. AssessORFData::PAO1_PreSaved_DataMapObj
    'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
    rda| rds
    Assessment
  283. AssessORFData::PAO1_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
    rda| rds
    Assessment
  284. AssessORFData::PAO1_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
    rda| rds
    Assessment
  285. AssessORFData::PAO1_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
    rda| rds
    Assessment
  286. AssessORFData::PAO1_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Pseudomonas aeruginosa_ strain PAO1
    rda| rds
    Assessment
  287. AssessORFData::SL1344_PreSaved_DataMapObj
    'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
    rda| rds
    Assessment
  288. AssessORFData::SL1344_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
    rda| rds
    Assessment
  289. AssessORFData::SL1344_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
    rda| rds
    Assessment
  290. AssessORFData::SL1344_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
    rda| rds
    Assessment
  291. AssessORFData::SL1344_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Salmonella enterica_ subsp. _enterica_ serovar Typhimurium strain SL1344
    rda| rds
    Assessment
  292. AssessORFData::Strain10403S_PreSaved_DataMapObj
    'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
    rda| rds
    Assessment
  293. AssessORFData::Strain10403S_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
    rda| rds
    Assessment
  294. AssessORFData::Strain10403S_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
    rda| rds
    Assessment
  295. AssessORFData::Strain10403S_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
    rda| rds
    Assessment
  296. AssessORFData::Strain10403S_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Listeria monocytogenes_ strain 10403S
    rda| rds
    Assessment
  297. AssessORFData::Strain168_PreSaved_DataMapObj
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
    rda| rds
    Assessment
  298. AssessORFData::Strain168_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
    rda| rds
    Assessment
  299. AssessORFData::Strain168_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
    rda| rds
    Assessment
  300. AssessORFData::Strain168_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
    rda| rds
    Assessment
  301. AssessORFData::Strain168_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Bacillus subtilis_ subsp. _subtilis_ strain 168
    rda| rds
    Assessment
  302. AssessORFData::TCH1516_PreSaved_DataMapObj
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
    rda| rds
    Assessment
  303. AssessORFData::TCH1516_PreSaved_ResultsObj_GenBank
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
    rda| rds
    Assessment
  304. AssessORFData::TCH1516_PreSaved_ResultsObj_GeneMarkS2
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
    rda| rds
    Assessment
  305. AssessORFData::TCH1516_PreSaved_ResultsObj_Glimmer
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
    rda| rds
    Assessment
  306. AssessORFData::TCH1516_PreSaved_ResultsObj_Prodigal
    'Assessment' Objects for _Staphylococcus aureus_ subsp. _aureus_ strain USA300_TCH1516
    rda| rds
    Assessment
  307. ASSET::betahat
    Data for the fast_asset example
    json| rda| rds
    numeric
  308. ASSET::data
    Data for the h.traits example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 13
  309. ASSET::data
    Data for the h.traits example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11043 x 7
  310. ASSET::ldscintmat
    Data for the fast_asset example
    csv| json| rda| rds
    matrix|116 x 116
  311. ASSET::N00
    Data for the h.traits example
    csv| json| rda| rds
    matrix|6 x 6
  312. ASSET::N10
    Data for the h.traits example
    csv| json| rda| rds
    matrix|6 x 6
  313. ASSET::N11
    Data for the h.traits example
    csv| json| rda| rds
    matrix|6 x 6
  314. ASSET::Neff
    Data for the fast_asset example
    json| rda| rds
    numeric
  315. ASSET::SE
    Data for the fast_asset example
    json| rda| rds
    numeric
  316. ASSET::SNP
    Data for the fast_asset example
    json| rda| rds
    character
  317. ASSET::traits
    Data for the fast_asset example
    json| rda| rds
    character
  318. ASSIGN::excludegenes
    Exclude Gene List
    json| rda| rds
    character
  319. ASSIGN::geneList1
    Pathway signature gene sets
    csv| json| rda| rds
    list
  320. ASSIGN::gfrn_geneList
    Pathway Signature Gene Lists
    csv| json| rda| rds
    list
  321. ASSIGN::testData1
    Gene expression profiling from cancer patients (test dataset)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 111
  322. ASSIGN::trainingData1
    Gene expression profiling from cell line perturbation experiments (training dataset)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 55
  323. ASURAT::human_COMSig_eg
    A list of small Cell Ontology and MSigDB databases for human.
    csv| json| rda| rds
    list
  324. ASURAT::human_GO_eg
    A list of small Gene Ontology database for human.
    json| rda| rds
    list
  325. ASURAT::human_KEGG_eg
    A list of small KEGG database for human.
    csv| json| rda| rds
    list
  326. ASURAT::pbmc_eg
    A SingleCellExperiment object made from a gene expression table.
    rda| rds
    SingleCellExperiment
  327. ASURAT::pbmcs_eg
    A list of SingleCellExperiment objects made from sign-sample matrices.
    rda| rds
    list
  328. asuri::ex_genePheno
    ex_genePheno
    rda| rds
    list
  329. asuri::ex_patientRisk
    ex_patientRisk
    rda| rds
    list
  330. asuri::ex_predictPatientRisk
    ex_predictPatientRisk
    csv| xlsx| json| ndjson| rda| rds
    data.frame|77 x 1
  331. asuri::ex_prefilterSAM
    ex_prefilterSAM
    json| rda| rds
    character
  332. asuri::seBRCA
    Example SummarizedExperiment object
    rda| rds
    SummarizedExperiment
  333. atSNP::encode_motif
    A motif library containing 2065 motifs downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.
    json| rda| rds
    list
  334. atSNP::encode_motifinfo
    The information for the motif library downloaded from http://compbio.mit.edu/encode-motifs/motifs.txt.
    json| rda| rds
    character
  335. atSNP::jaspar_motif
    A motif library containing 593 motifs downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.
    json| rda| rds
    list
  336. atSNP::jaspar_motifinfo
    The information for the motif library downloaded from http://jaspar.genereg.net/html/DOWNLOAD/JASPAR_CORE/pfm/nonredundant/pfm_all .txt.
    json| rda| rds
    character
  337. atSNP::motif_library
    A sample motif library.
    csv| json| rda| rds
    list
  338. atSNP::motif_match
    Composit logo plotting input containing motif scores, the matching subsequences and the augmented matching subsequences on SNP and reference allele
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 35
  339. atSNP::motif_scores
    Scores for the sample snp data computed based on the motif data.
    json| rda| rds
    list
  340. atSNP::prior
    Default stationary distribution for nucleotide sequences in the reference genome.
    json| rda| rds
    numeric
  341. atSNP::snp_tbl
    A data frame for SNP information.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 5
  342. atSNP::snpInfo
    A data set for SNP information.
    json| rda| rds
    list
  343. atSNP::transition
    Default transition probability matrix for nucleotide sequences in the reference genome.
    csv| json| rda| rds
    matrix|4 x 4
  344. attract::exprs.dat
    Gene Expression Matrix of Published Data
    csv| json| rda| rds
    matrix|11044 x 68
  345. attract::loring.eset
    An ExpressionSet Object containing published data from M?ller et al.
    rda| rds
    ExpressionSet
  346. attract::samp.info
    samp.info Contains the Sample Information for the Mueller data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|68 x 2
  347. attract::subset.loring.eset
    An ExpressionSet Object containing published data from M?ller et al.
    rda| rds
    ExpressionSet
  348. AWAggregator::sample.prot.PD
    Sample Protein Data from Protein Discoverer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 2
  349. AWAggregator::sample.PSM.FP
    Sample PSM Data from FragPipe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|118 x 20
  350. AWAggregator::sample.PSM.PD
    Sample PSM Data from Proteome Discoverer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|128 x 21
  351. AWFisher::data_mouseMetabolism
    Mouse metabolism microarray data
    json| rda| rds
    list
  352. BaalChIP::BaalObject
    BaalObject example dataset
    rda| rds
    BaalChIP
  353. BaalChIP::blacklist_hg19
    Blacklisted genomic regions
    rda| rds
    GRanges
  354. BaalChIP::ENCODEexample
    ENCODEexample example dataset
    rda| rds
    BaalChIP
  355. BaalChIP::FAIREexample
    FAIREexample example dataset
    rda| rds
    BaalChIP
  356. BaalChIP::pickrell2011cov1_hg19
    Genomic regions of collapsed repeats
    rda| rds
    GRanges
  357. BaalChIP::UniqueMappability50bp_hg19
    Genomic regions of unique mappability
    rda| rds
    GRanges
  358. BANDITS::gene_tr_id
    Gene-transcript matching
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1373 x 2
  359. BANDITS::input_data
    A 'BANDITS_data' object, generated with 'create_data'
    rda| rds
    BANDITS_data
  360. BANDITS::precision
    Estimates for the log-precision parameter, generated with 'prior_precision'
    json| rda| rds
    list
  361. BANDITS::results
    Results of the DTU test, generated with 'test_DTU'
    rda| rds
    BANDITS_test
  362. Banksy::hippocampus
    Mouse Hippocampus VeraFISH data
    json| rda| rds
    list
  363. Banksy::rings
    An unrealistic simulation of spatially-resolved omics data.
    rda| rds
    SpatialExperiment
  364. banocc::compositions_hard_null
    Simulated compositional data with no feature correlations
    csv| json| rda| rds
    matrix|1000 x 9
  365. banocc::compositions_neg_spike
    Simulated compositional data with a negative count correlation
    csv| json| rda| rds
    matrix|1000 x 9
  366. banocc::compositions_null
    Simulated compositional data with no feature correlations
    csv| json| rda| rds
    matrix|1000 x 9
  367. banocc::compositions_pos_spike
    Simulated compositional data with a positive count correlation
    csv| json| rda| rds
    matrix|1000 x 9
  368. banocc::counts_hard_null
    Simulated count data with no feature correlations
    csv| json| rda| rds
    matrix|1000 x 9
  369. banocc::counts_neg_spike
    Simulated count data with one negative feature correlation
    csv| json| rda| rds
    matrix|1000 x 9
  370. banocc::counts_null
    Simulated count data with no feature correlations
    csv| json| rda| rds
    matrix|1000 x 9
  371. banocc::counts_pos_spike
    Simulated count data with one positive feature correlation
    csv| json| rda| rds
    matrix|1000 x 9
  372. barbieQ::monkeyHSPC
    Monkey HSPC Cell Barcoding Data
    rda| rds
    SummarizedExperiment
  373. BaseSpaceR::aAuth
    Sample 'AppAuth' instance with 'browse global' scope
    rda| rds
    AppAuth
  374. Basic4Cseq::liverData
    Example 4C-seq data set of fetal liver data
    rda| rds
    Data4Cseq
  375. Basic4Cseq::liverDataRaw
    Example 4C-seq data set of fetal liver data
    rda| rds
    Data4Cseq
  376. BASiCS::ChainRNA
    Extract from the chain obtained for the Grun et al (2014) data: pool-and-split samples
    rda| rds
    BASiCS_Chain
  377. BASiCS::ChainRNAReg
    Extract from the chain obtained for the Grun et al (2014) data: pool-and-split samples (regression model)
    rda| rds
    BASiCS_Chain
  378. BASiCS::ChainSC
    Extract from the chain obtained for the Grun et al (2014) data: single-cell samples
    rda| rds
    BASiCS_Chain
  379. BASiCS::ChainSCReg
    Extract from the chain obtained for the Grun et al (2014) data: single-cell samples (regression model)
    rda| rds
    BASiCS_Chain
  380. batchCorr::meta
    ThreeBatchData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 3
  381. batchCorr::PTfill
    ThreeBatchData
    csv| json| rda| rds
    matrix|90 x 0
  382. batchCorr::PTnofill
    ThreeBatchData
    csv| json| rda| rds
    matrix|90 x 0
  383. BatchQC::batch_indicator
    Batch and Condition indicator for signature data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|89 x 2
  384. BatchQC::merged_IDs
    BMI and matched sample names for TB data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|91 x 3
  385. BatchQC::protein_data
    Protein data with 39 protein expression levels
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39 x 24
  386. BatchQC::protein_sample_info
    Batch and Condition indicator for protein expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 2
  387. BatchQC::signature_data
    Signature data with 1600 gene expression levels
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1600 x 89
  388. BatchSVG::list_batch_df
    List of data frames of nSD(s) on the batch of subject
    csv| json| rda| rds
    list
  389. Battlefield::visium_simulated_spe
    Simulated Visium SpatialExperiment dataset
    rda| rds
    SpatialExperiment
  390. Battlefield::visiumHD_16um_simulated_spe
    Simulated VisiumHD 16 µm binned SpatialExperiment dataset
    rda| rds
    SpatialExperiment
  391. Battlefield::visiumHD_8um_simulated_spe
    Simulated VisiumHD 8 µm binned SpatialExperiment dataset
    rda| rds
    SpatialExperiment
  392. BayesKnockdown::lincs.kd
    LINCS L1000 Knockdown Example Dataset
    csv| json| rda| rds
    matrix|21 x 0
  393. bayNorm::EXAMPLE_DATA_list
    A subset of Grun et al (2014) data: 2i samples
    json| rda| rds
    list
  394. baySeq::CDPost
    'countData' object derived from data file 'simData' with estimated likelihoods of differential expression.
    rda| rds
    countData
  395. baySeq::CDPriors
    'countData' object derived from data file 'simData' with estimated priors.
    rda| rds
    countData
  396. baySeq::mobAnnotation
    Annotation data for a set of small RNA loci derived from sequencing of grafts of Arabidopsis thaliana intended for differential expression analyses.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3000 x 3
  397. baySeq::mobData
    Data from a set of small RNA sequencing experiments carried out on grafts of Arabidopsis thaliana intended for differential expression analyses.
    csv| json| rda| rds
    matrix|3000 x 6
  398. baySeq::pairData
    Simulated data for testing the baySeq package methods for paired data
    csv| json| rda| rds
    matrix|1000 x 8
  399. baySeq::simData
    Simulated data for testing the baySeq package methods
    csv| json| rda| rds
    matrix|1000 x 0
  400. baySeq::zimData
    Simulated data for testing the baySeq package methods
    csv| json| rda| rds
    matrix|1000 x 0
  401. bcellViper::dset
    Human normal and tumor B-cell phenotypes expresion data
    rda| rds
    ExpressionSet
  402. bcellViper::regulon
    Human B-cell context-specific transcriptional interactome
    csv| rda| rds
    regulon
  403. BCRANK::BCRANKout
    BCRANK results for USF1 ChIP-chip data
    rda| rds
    BCRANKresult
  404. beadarray::metaTemplate
    GEO required fields
    json| rda| rds
    list
  405. beadarray::platformSigs
    Annotation definitions
    json| rda| rds
    list
  406. beadarrayExampleData::exampleBLData
    beadLevelData object from an example experiment
    rda| rds
    beadLevelData
  407. beadarrayExampleData::exampleSummaryData
    ExpressionSetIllumina object for the example experiment
    rda| rds
    ExpressionSetIllumina
  408. BeadSorted.Saliva.EPIC::BeadSorted.Saliva.EPIC.estimates
    Estimated cell proportion for samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 3
  409. BEAT::positions
    Sample dataset of CpG positions for a single cell BS-seq sample
    csv| xlsx| json| ndjson| rda| rds
    data.frame|235935 x 4
  410. BEAT::positions.reference
    Sample dataset of CpG positions for a reference BS-Seq sample
    csv| xlsx| json| ndjson| rda| rds
    data.frame|237531 x 4
  411. BEclear::ex.corrected.data
    Example matrix of corrected data for the BEclear-package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|250 x 40
  412. BEclear::ex.data
    Example data set for the BEclear-package
    csv| json| rda| rds
    matrix|250 x 40
  413. BEclear::ex.samples
    Example data set for the BEclear-package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 2
  414. benchdamic::microbial_metabolism
    (Data) Microbial metabolism
    csv| xlsx| json| ndjson| rda| rds
    data.frame|144 x 2
  415. benchdamic::ps_plaque_16S
    (Data) 60 Gingival Plaque samples of 16S rRNA (HMP 2012)
    rda| rds
    phyloseq
  416. benchdamic::ps_stool_16S
    (Data) 33 Stool samples of 16S rRNA (HMP 2012)
    rda| rds
    phyloseq
  417. BenchHub::lubomPD
    Human Gut Microbiome Abundance and Patient Classes
    json| rda| rds
    factor
  418. BenchHub::x
    Human Gut Microbiome Abundance and Patient Classes
    csv| json| rda| rds
    matrix|575 x 1192
  419. beta7::beta7
    Data from Rodriguez et al. (2004) Differential Gene Expression by Memory/Effector T Helper Cells Bearing the Gut-Homing Receptor Integrin alpha4 beta7.
    rda| rds
    marrayRaw
  420. betaHMM::annotation_data
    MethylationEPIC manifest data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38672 x 9
  421. betaHMM::pca_methylation_data
    Simulated DNA methylation data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38672 x 9
  422. betaHMM::sample_annotation_file
    MethylationEPIC manifest data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 9
  423. betaHMM::sample_methylation_file
    Simulated DNA methylation data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 9
  424. BG2::kinship
    A. Thaliana Kinship matrix
    csv| json| rda| rds
    matrix|328 x 0
  425. BG2::SNPs
    A. Thaliana Genotype matrix
    csv| json| rda| rds
    matrix|328 x 0
  426. BG2::Y_binary
    A. Thaliana Simulated Phenotype matrix
    json| rda| rds
    integer
  427. BG2::Y_poisson
    A. Thaliana Simulated Phenotype matrix
    json| rda| rds
    integer
  428. BgeeDB::geneList
    Example of gene list object used to run a topAnat enrichment test, created on June 2018. The format of the gene list is the same as the gene list required to build a 'topGOdata' object in the 'topGO' package: a vector with background genes as names, and 0 or 1 values depending if a gene is in the foreground or not. In this example the foreground genes are zebrafish genes with an annotated phenotype related to "pectoral fin", and the background is composed of all zebrafish Ensembl genes with an annotated phenotype from ZFIN. The gene list was built using the biomaRt package, and the code used can be found in the vignette of the package.
    json| rda| rds
    factor
  429. BicARE::sample.bicData
    Example data set for BicARE
    rda| rds
    ExpressionSet
  430. BicARE::sample.biclustering
    Example biclustering object
    rda| rds
    biclustering
  431. bigmelon::cantaloupe
    Small MethyLumi 450k data sets for testing
    rda| rds
    MethyLumiSet
  432. bigmelon::honeydew
    Small MethyLumi 450k data sets for testing
    rda| rds
    MethyLumiSet
  433. bioassayR::samplebioassay
    Sample activity data for use with bioassayR
    csv| xlsx| json| ndjson| rda| rds
    data.frame|57 x 3
  434. Biobase::aaMap
    Dataset: Names and Characteristics of Amino Acids
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 6
  435. Biobase::geneCov
    Sample expression matrix and phenotype data.frames.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 3
  436. Biobase::geneCovariate
    Sample expression matrix and phenotype data.frames.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 3
  437. Biobase::geneData
    Sample expression matrix and phenotype data.frames.
    csv| json| rda| rds
    matrix|500 x 26
  438. Biobase::reporter
    Example data.frame representing reporter information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 1
  439. Biobase::sample.ExpressionSet
    Dataset of class 'ExpressionSet'
    rda| rds
    ExpressionSet
  440. Biobase::sample.MultiSet
    Data set of class 'MultiSet'
    rda| rds
    MultiSet
  441. Biobase::seD
    Sample expression matrix and phenotype data.frames.
    csv| json| rda| rds
    matrix|500 x 26
  442. Biobase::SW
    Class to Contain High-Throughput Assays and Experimental Metadata
    json| rda| rds
    RGList
  443. bioCancer::epiGenomics
    Default dataset of bioCancer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 7
  444. bioCancer::user_CNA
    Example of Copy Number Alteration (CNA) dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|579 x 13
  445. bioCancer::user_MetHM27
    Example of Methylation HM27 dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 13
  446. bioCancer::user_MetHM450
    Example of Methylation HM450 dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 13
  447. bioCancer::user_mRNA
    Example of mRNA expression dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|307 x 13
  448. bioCancer::user_Mut
    Example of Mutation dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37 x 23
  449. BioCartaImage::BC2ENTREZ
    Pre-computed data objects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1739 x 2
  450. BioCartaImage::BIOCARTA_PATHWAYS
    Pre-computed data objects
    rda| rds
    list
  451. BioCartaImage::PATHWAY2BC
    Pre-computed data objects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4428 x 2
  452. BioCartaImage::PATHWAY2ENTREZ
    Pre-computed data objects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5196 x 2
  453. BioCartaImage::PATHWAY2MSIGDB
    Pre-computed data objects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|292 x 2
  454. BiocFHIR::allin
    collection of synthea FHIR documents ingested
    json| rda| rds
    list
  455. BiocHail::kg_3202
    data.frame with metadata about 3202 samples genotyped against T2T reference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3202 x 22
  456. BiocHail::pcs_191k
    HWE-normalized PCA scores for 3202 thousand-genomes samples genotyped with the telomere-to-telomere reference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3202 x 5
  457. BiocHail::pcs_38k
    HWE-normalized PCA scores for 3202 thousand-genomes samples genotyped with the telomere-to-telomere reference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3202 x 8
  458. biocViews::biocViewsVocab
    Bioconductor Task Views Vocabulary Data
    rda| rds
    graphNEL
  459. biomaRt::ensembl_versions
    Mapping of Ensembl versions to their release dates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35 x 5
  460. biomvRCNS::coriell
    Array CGH data set of Coriell cell lines
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 5
  461. biomvRCNS::encodeTP53
    mapped RNA-seq data from ENCODE
    rda| rds
    list
  462. biomvRCNS::variosm
    Differential methylation data from sequencing
    rda| rds
    GRanges
  463. BioNAR::diseasome
    Barabasi's Diseasome Network
    rda| rds
    igraph
  464. BioNERO::filt.se
    Filtered maize gene expression data from Shin et al., 2021.
    rda| rds
    SummarizedExperiment
  465. BioNERO::og.zma.osa
    Orthogroups between maize and rice
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18034 x 3
  466. BioNERO::osa.se
    Rice gene expression data from Shin et al., 2021.
    rda| rds
    SummarizedExperiment
  467. BioNERO::zma.interpro
    Maize Interpro annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27655 x 2
  468. BioNERO::zma.se
    Maize gene expression data from Shin et al., 2021.
    rda| rds
    SummarizedExperiment
  469. BioNERO::zma.tfs
    Maize transcription factors
    csv| xlsx| json| ndjson| rda| rds
    data.frame|387 x 2
  470. BioNet::pvaluesExample
    Example p-values for aggregation statistics
    csv| json| rda| rds
    matrix|6154 x 2
  471. biosigner::diaplasma
    Analysis of plasma from diabetic patients by LC-HRMS
    json| rda| rds
    list
  472. biosigner::SpikePos
    Spike-in metabolomics data for apple extracts (from the BioMark package)
    json| rda| rds
    list
  473. Biostrings::BLOSUM100
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  474. Biostrings::BLOSUM45
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  475. Biostrings::BLOSUM50
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  476. Biostrings::BLOSUM62
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  477. Biostrings::BLOSUM80
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  478. Biostrings::HNF4alpha
    Known HNF4alpha binding sequences
    rda| rds
    DNAStringSet
  479. Biostrings::PAM120
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  480. Biostrings::PAM250
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  481. Biostrings::PAM30
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  482. Biostrings::PAM40
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  483. Biostrings::PAM70
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  484. Biostrings::yeastSEQCHR1
    An annotation data file for CHR1 in the yeastSEQ package
    json| rda| rds
    character
  485. BioTIP::cod
    cod dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19689 x 6
  486. BioTIP::gencode
    A chr21 data from GENCODE GRCh37
    rda| rds
    GRanges
  487. BioTIP::GSE6136_cli
    GSE6136 cli dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 27
  488. BioTIP::GSE6136_matrix
    GSE6136 matrix dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22690 x 27
  489. BioTIP::ILEF
    Chromosome ranges of chr21 dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 6
  490. BioTIP::intron
    Coding transcriptome in chr21 dataset
    rda| rds
    GRanges
  491. BioTIP::membersL
    rda| rds
    list
  492. BioTIP::subcounts
    json| rda| rds
    list
  493. biotmleData::biomarkerTMLEout
    Results obtained from running biomarkertmle on the "illuminaData" sample data
    rda| rds
    bioTMLE
  494. biotmleData::illuminaData
    Sample baseline covariates and Illumina microarray data from a 2007 study
    rda| rds
    SummarizedExperiment
  495. biotmleData::rnaseqTMLEout
    Results obtained from running biomarkertmle on simulated RNA-Seq data
    rda| rds
    bioTMLE
  496. biovizBase::crc.gr
    CRC
    rda| rds
    GRanges
  497. biovizBase::crc1.GeRL
    crc1.GeRL
    rda| rds
    SimpleGRangesList
  498. biovizBase::darned_hg19_subset500
    Subset of RNA editing sites in hg19...
    rda| rds
    GRanges
  499. biovizBase::genesymbol
    Gene symbols with position...
    rda| rds
    GRanges
  500. biovizBase::hg19Ideogram
    Hg19 ideogram without cytoband information...
    rda| rds
    GRanges
  501. biovizBase::hg19IdeogramCyto
    Hg19 ideogram with cytoband information...
    rda| rds
    GRanges
  502. biovizBase::hg19sub
    CRC
    rda| rds
    GRanges
  503. biovizBase::ideo
    ideogram without cytoband information
    rda| rds
    list
  504. biovizBase::ideoCyto
    ideogram with cytoband information
    rda| rds
    list
  505. biovizBase::mut.gr
    CRC
    rda| rds
    GRanges
  506. biscuiteer::clocks
    clocks
    csv| xlsx| json| ndjson| rda| rds
    data.frame|730 x 14
  507. biscuiteer::ENSR_subset.hg19
    ENSR_subset data from hg19 genome
    rda| rds
    GRanges
  508. biscuiteer::ENSR_subset.hg38
    ENSR_subset data from hg38 genome
    rda| rds
    GRanges
  509. biscuiteer::GRCh37.chromArm
    GRCh37.chromArm
    rda| rds
    GRanges
  510. biscuiteer::GRCh38.chromArm
    GRCh38.chromArm
    rda| rds
    GRanges
  511. biscuiteer::H9state23unmeth.hg19
    H9state23unmeth.hg19
    rda| rds
    GRanges
  512. biscuiteer::H9state23unmeth.hg38
    H9state23unmeth.hg38
    rda| rds
    GRanges
  513. biscuiteer::hg19.chromArm
    hg19.chromArm
    rda| rds
    GRanges
  514. biscuiteer::hg38.chromArm
    hg38.chromArm
    rda| rds
    GRanges
  515. biscuiteer::HMM_CpG_islands.hg19
    HMM_CpG_islands.hg19
    rda| rds
    GRanges
  516. biscuiteer::HMM_CpG_islands.hg38
    HMM_CpG_islands.hg38
    rda| rds
    GRanges
  517. biscuiteer::seqinfo.hg19
    seqinfo.hg19
    rda| rds
    Seqinfo
  518. biscuiteer::seqinfo.hg38
    seqinfo.hg38
    rda| rds
    Seqinfo
  519. biscuiteer::seqinfo.mm10
    seqinfo.mm10
    rda| rds
    Seqinfo
  520. BiSeq::betaResults
    The output of 'betaRegression'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|344 x 10
  521. BiSeq::betaResultsNull
    The output of 'betaRegression' for resampled data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|344 x 10
  522. BiSeq::DMRs
    The output of 'findDMRs'
    rda| rds
    GRanges
  523. BiSeq::predictedMeth
    The output of 'predictMeth'
    rda| rds
    BSrel
  524. BiSeq::promoters
    A 'GRanges' of promoters of the human genome
    rda| rds
    GRanges
  525. BiSeq::rrbs
    RRBS data of APL patient samples and controls.
    rda| rds
    BSraw
  526. BiSeq::vario
    Output of 'makeVariogram'
    json| rda| rds
    list
  527. blacksheepr::sample_annotationdata
    sample_annotationdata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|76 x 6
  528. blacksheepr::sample_phosphodata
    sample_phosphodata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15532 x 76
  529. blacksheepr::sample_rnadata
    sample_rnadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4317 x 76
  530. bladderbatch::bladderEset
    Bladder Gene Expression Data Illustrating Batch Effects
    rda| rds
    ExpressionSet
  531. blase::MCA_PF_SCE
    Malaria Cell Atlas Plasmodium falciparum for BLASE Vignette
    rda| rds
    SingleCellExperiment
  532. blase::painter_microarray
    Painter 2018 Plasmodium falciparum 48h asexual lifecycle microarray data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1731 x 48
  533. blase::tradeSeq_BLASE_example_sce
    TradeSeq Example SCE for BLASE Vignette
    rda| rds
    SingleCellExperiment
  534. blase::zhang_2021_heat_shock_bulk
    Zhang 2021 Plasmodium falciparum heat shock bulk data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|990 x 12
  535. blimaTestingData::blimatesting
    blimatesting object for testing purposes of blima package
    rda| rds
    list
  536. BLMA::data_GSE17054
    Gene expression dataset GSE17054 from Majeti et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4738 x 9
  537. BLMA::data_GSE33223
    Gene expression dataset GSE33223 from Bacher et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4114 x 30
  538. BLMA::data_GSE42140
    The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4114 x 31
  539. BLMA::data_GSE57194
    Gene expression dataset GSE57194 from Abdul-Nabi et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4114 x 12
  540. BLMA::group_GSE17054
    Gene expression dataset GSE17054 from Majeti et al.
    json| rda| rds
    character
  541. BLMA::group_GSE33223
    Gene expression dataset GSE33223 from Bacher et al.
    json| rda| rds
    character
  542. BLMA::group_GSE42140
    The gene expression dataset GSE42140 obtained from Gene Expression Omnibus
    json| rda| rds
    character
  543. BLMA::group_GSE57194
    Gene expression dataset GSE57194 from Abdul-Nabi et al.
    json| rda| rds
    character
  544. BloodCancerMultiOmics2017::conctab
    Concentrations of drugs used in the drug screen
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64 x 5
  545. BloodCancerMultiOmics2017::cytokineViab
    Response of CLL to exposure to cytokines
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|324 x 11
  546. BloodCancerMultiOmics2017::day23rep
    Cell viability data for 3 replicated samples
    rda| rds
    NChannelSet
  547. BloodCancerMultiOmics2017::dds
    Gene expression data
    rda| rds
    DESeqDataSet
  548. BloodCancerMultiOmics2017::drpar
    Cell viability data from the high-throughput drug screen
    rda| rds
    NChannelSet
  549. BloodCancerMultiOmics2017::drugs
    Meta data of the compounds
    csv| xlsx| json| ndjson| rda| rds
    data.frame|91 x 8
  550. BloodCancerMultiOmics2017::exprTreat
    Gene expression before and after drug treatment
    rda| rds
    ExpressionSet
  551. BloodCancerMultiOmics2017::lpdAll
    An assembly of drug viability data, methylation clusters, important mutations and copy number variants
    rda| rds
    ExpressionSet
  552. BloodCancerMultiOmics2017::methData
    DNA methylation data
    rda| rds
    RangedSummarizedExperiment
  553. BloodCancerMultiOmics2017::mutCOM
    Genetic information of patient samples
    rda| rds
    NChannelSet
  554. BloodCancerMultiOmics2017::patmeta
    Meta data of the patient samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|265 x 10
  555. BloodCancerMultiOmics2017::validateExp
    Data of the validation drug sensitivity screen using five additional drugs
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3200 x 4
  556. bnbc::cgEx
    Sample chr22 Data
    rda| rds
    ContactGroup
  557. bnem::bcr
    B-Cell receptor signalling perturbations
    json| rda| rds
    list
  558. BOBaFIT::TCGA_BRCA_CN_segments
    Segments of 100 Breast Cancer samples, downloaded from TCGA-BRCA.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79607 x 12
  559. breastCancerMAINZ::mainz
    Gene expression, annotations and clinical data from Schmidt et al. 2008
    rda| rds
    ExpressionSet
  560. breastCancerNKI::nki
    Gene expression, annotations and clinical data from van't Veer et al. 2002 and van de Vijver et al. 2002
    rda| rds
    ExpressionSet
  561. breastCancerTRANSBIG::transbig
    Gene expression, annotations and clinical data from TRANSBIG 2006
    rda| rds
    ExpressionSet
  562. breastCancerUNT::unt
    Gene expression, annotations and clinical data from Sotiriou et al. 2006
    rda| rds
    ExpressionSet
  563. breastCancerUPP::upp
    Gene expression, annotations and clinical data from Miller et al. 2005
    rda| rds
    ExpressionSet
  564. breastCancerVDX::vdx
    Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007
    rda| rds
    ExpressionSet
  565. BreastSubtypeR::AIMSmodel
    AIMSmodel: Model object for AIMS
    rda| rds
    list
  566. BreastSubtypeR::BreastSubtypeRobj
    BreastSubtypeRobj: Resources for NC-based methods
    rda| rds
    list
  567. BreastSubtypeR::Gene.ID.ann
    Gene.ID.ann: Gene annotation table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19675 x 6
  568. BreastSubtypeR::OSLO2EMIT0obj
    OSLO2EMIT0obj: Example dataset (OSLO2-EMIT0 cohort subset)
    rda| rds
    list
  569. BreastSubtypeR::sspbc.models
    sspbc.models: Short names for 11 SSPBC predictors
    rda| rds
    list
  570. BreastSubtypeR::sspbc.models.fullname
    sspbc.models.fullname: Full names for 11 SSPBC predictors
    rda| rds
    list
  571. BreastSubtypeR::TCGABRCAobj
    TCGABRCAobj: Example dataset (TCGA-BRCA subset)
    rda| rds
    list
  572. brendaDb::acronyms
    Information fields and their corresponding acronyms.
    csv| xlsx| json| ndjson| rda| rds
    data.table|40 x 2
  573. brgedata::brge_expo
    'ExposomeSet' for testing purpouses
    rda| rds
    ExposomeSet
  574. brgedata::brge_gexp
    'ExpressionSet' for testing purpouses
    rda| rds
    ExpressionSet
  575. brgedata::brge_methy
    'GenomicRatioSet' for testing purpouses
    rda| rds
    GenomicRatioSet
  576. brgedata::brge_prot
    'ExpressionSet' for testing purpouses
    rda| rds
    ExpressionSet
  577. bronchialIL13::HAH
    data on Affymetrix U133a chips regarding time course response of human bronchial cell line A549 to IL13
    rda| rds
    AffyBatch
  578. bronchialIL13::HAHrma
    data on Affymetrix U133a chips regarding time course response of human bronchial cell line A549 to IL13
    rda| rds
    ExpressionSet
  579. bsseq::BS.chr22
    Whole-genome bisulfite sequencing for chromosome 22 from Lister et al.
    rda| rds
    BSseq
  580. bsseqData::BS.cancer.ex
    WGBS for colon cancer, chr 21 and 22
    rda| rds
    BSseq
  581. bsseqData::BS.cancer.ex.fit
    WGBS for colon cancer, chr 21 and 22, including smoothed methylation values
    rda| rds
    BSseq
  582. bsseqData::BS.cancer.ex.tstat
    T-statistics for WGBS data for colon cancer, chr 21 and 22
    rda| rds
    BSseqTstat
  583. bsseqData::keepLoci.ex
    Which methylation loci were included in an analysis of BS.cancer.ex.
    json| rda| rds
    integer
  584. BulkSignalR::annotation.spa
    A skinny data frame used in the spatial workflow
    rda| rds
    DFrame
  585. BulkSignalR::bodyMap.mouse
    Mouse transcriptoms across tissues
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24543 x 8
  586. BulkSignalR::bsrdm
    A skinny BSRDataModel object related to sdc.
    rda| rds
    BSRDataModel
  587. BulkSignalR::bsrdm.comp
    A skinny BSRDataModelComp object related to sdc.
    rda| rds
    BSRDataModelComp
  588. BulkSignalR::bsrdm.spa
    A skinny BSRDataModel object related to a spatial data set
    rda| rds
    BSRDataModel
  589. BulkSignalR::bsrinf
    A skinny BSRInference object related to sdc.
    rda| rds
    BSRInference
  590. BulkSignalR::bsrinf.comp
    A skinny BSRInferenceComp object related to sdc.
    rda| rds
    BSRInferenceComp
  591. BulkSignalR::bsrinf.mouse
    A skinny BSRInference object related to bodyMap.mouse
    rda| rds
    BSRInference
  592. BulkSignalR::bsrinf.spa
    A skinny BSR-inference object related to spatial data set
    rda| rds
    BSRInference
  593. BulkSignalR::immune.signatures
    Immune cell gene signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1541 x 2
  594. BulkSignalR::ortholog.dict
    A skinny data frame used in the mouse workflow
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4572 x 1
  595. BulkSignalR::p.EMT
    Partial EMT gene signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 1
  596. BulkSignalR::sdc
    Salivary duct carcinoma transcriptoms
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19764 x 26
  597. BulkSignalR::tme.signatures
    Tumor microenvironment gene signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|213 x 2
  598. BUMHMM::covFile
    Example coverage data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1800 x 6
  599. BUMHMM::docFile
    Example drop-off count data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1800 x 6
  600. BUMHMM::dorFile
    Example drop-off rate data set.
    csv| json| rda| rds
    matrix|1800 x 0
  601. BUMHMM::se
    Example RNA structure probing data set.
    rda| rds
    SummarizedExperiment
  602. BUMHMM::seq
    Example genomic sequence string.
    json| rda| rds
    character
  603. bumphunter::TT
    Example data
    rda| rds
    list
  604. BUS::copasi
    copasi data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 100
  605. BUS::tumors.miRNA
    miRNA data from Human brain tumors
    csv| json| rda| rds
    matrix|93 x 12
  606. BUS::tumors.mRNA
    Gene expression data from Human brain tumors
    csv| json| rda| rds
    matrix|7089 x 12
  607. BUScorrect::BUSexample_data
    A simulated data set
    json| rda| rds
    list
  608. BUSpaRse::cellranger_biotypes
    Cell Ranger gene biotypes
    json| rda| rds
    character
  609. BUSpaRse::ensembl_gene_biotypes
    Gene biotypes from Ensembl
    json| rda| rds
    character
  610. BUSpaRse::ensembl_gff_mcols
    These are the column names of the 'mcols' when the Ensembl GTF file is read into R as a 'GRanges', including 'gene_id', 'transcript_id', 'biotype', 'description', and so on, and the mandatory tags like 'ID', 'Name', and 'Parent'.
    json| rda| rds
    character
  611. BUSpaRse::ensembl_gtf_mcols
    Tags in the attributes field of Ensembl GTF files
    json| rda| rds
    character
  612. BUSpaRse::ensembl_tx_biotypes
    Transcript biotypes from Ensembl
    json| rda| rds
    character
  613. BUSpaRse::refseq_gff_mcols
    Tags in the attributes field of RefSeq GFF files
    json| rda| rds
    character
  614. BUSseq::BUSseqfits_example
    An external example of the output of the 'BUSseq_MCMC'
    rda| rds
    SingleCellExperiment
  615. CaDrA::BRCA_GISTIC_MUT_SIG
    Genomic Data from TCGA BRCA MUT + GISTIC
    rda| rds
    SummarizedExperiment
  616. CaDrA::CCLE_MUT_SCNA
    Genomic Data from CCLE MUT + SCNA
    rda| rds
    SummarizedExperiment
  617. CaDrA::CTNBB1_reporter
    Transcriptional Activity of Beta-Catenin in Cancers
    json| rda| rds
    numeric
  618. CaDrA::perm_res
    Pre-computed permutation results for simulated data ('sim_FS')
    json| rda| rds
    list
  619. CaDrA::sim_FS
    Simulated Genomic Data
    rda| rds
    SummarizedExperiment
  620. CaDrA::sim_Scores
    Simulated Input Scores
    json| rda| rds
    numeric
  621. CaDrA::TAZYAP_BRCA_ACTIVITY
    YAP/TAZ Activity in TCGA BRCA dataset
    json| rda| rds
    numeric
  622. CaDrA::topn_list
    Top-N Results for Simulated Data ('sim_FS')
    rda| rds
    list
  623. CAEN::realData
    A real dataset of gene expression RNA-seq.
    rda| rds
    SummarizedExperiment
  624. CAFE::CAFE_data
    CAFE data set
    json| rda| rds
    list
  625. CAGEfightR::exampleBidirectional
    Example CAGE Data
    rda| rds
    RangedSummarizedExperiment
  626. CAGEfightR::exampleCTSSs
    Example CAGE Data
    rda| rds
    RangedSummarizedExperiment
  627. CAGEfightR::exampleDesign
    Example CAGE Data
    rda| rds
    DFrame
  628. CAGEfightR::exampleGenes
    Example CAGE Data
    rda| rds
    RangedSummarizedExperiment
  629. CAGEfightR::exampleUnidirectional
    Example CAGE Data
    rda| rds
    RangedSummarizedExperiment
  630. cageminer::chr_length
    Pepper chromosome lengths
    rda| rds
    GRanges
  631. cageminer::gcn
    Simulation of the output list from BioNERO::exp2gcn() with pepper data
    json| rda| rds
    list
  632. cageminer::gene_ranges
    Genomic coordinates of pepper genes
    rda| rds
    GRanges
  633. cageminer::guides
    Guide genes associated with defense and resistance to oomycetes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23699 x 2
  634. cageminer::hubs
    Example hub genes for the network stored in the gcn object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|352 x 3
  635. cageminer::mine2
    Example output from mine_step2()
    json| rda| rds
    list
  636. cageminer::mined_candidates
    Example output from mined_candidates()
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 4
  637. cageminer::pepper_se
    Gene expression data from Kim et al., 2018.
    rda| rds
    SummarizedExperiment
  638. cageminer::snp_pos
    Capsicum annuum SNPs associated with resistance to Phytophthora root rot.
    rda| rds
    GRanges
  639. cageminer::tfs
    Pepper transcription factors
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1665 x 2
  640. CAGEr::exampleCAGEexp
    Example CAGEexp object.
    rda| rds
    CAGEexp
  641. CAGEr::exampleZv9_annot
    Example zebrafish annotation data
    rda| rds
    GRanges
  642. CAGEr::FANTOM5humanSamples
    FANTOM5 human samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|988 x 5
  643. CAGEr::FANTOM5mouseSamples
    FANTOM5 mouse samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|395 x 5
  644. calm::pso
    Psoriasis RNA-seq dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18151 x 3
  645. CAMERA::mm14
    Extract of marker mixture 14 LC/MS data
    rda| rds
    xcmsSet
  646. cancerclass::GOLUB
    GOLUB DATA
    rda| rds
    ExpressionSet
  647. cancerclass::GOLUB1
    GOLUB DATA
    rda| rds
    ExpressionSet
  648. cancerdata::VEER
    Breast cancer gene expression data (van't Veer)
    rda| rds
    ExpressionSet
  649. cancerdata::VEER1
    Breast cancer gene expression data (van't Veer)
    rda| rds
    ExpressionSet
  650. cancerdata::VIJVER
    Breast cancer gene expression data (Vijver)
    rda| rds
    ExpressionSet
  651. cancerdata::VIJVER1
    Breast cancer gene expression data (Vijver)
    rda| rds
    ExpressionSet
  652. cancerdata::YOUNG
    Breast cancer gene expression data (van't Veer, young patients)
    rda| rds
    ExpressionSet
  653. cancerdata::YOUNG1
    Breast cancer gene expression data (van't Veer, young patients)
    rda| rds
    ExpressionSet
  654. cardelino::A_clone
    A matrix of read numbers of alternative alleles for clone ID
    csv| json| rda| rds
    matrix|34 x 0
  655. cardelino::A_germline
    A matrix of read numbers of alternative alleles
    csv| json| rda| rds
    matrix|34 x 0
  656. cardelino::Config_all
    A list of tree configuration
    json| rda| rds
    list
  657. cardelino::D_clone
    A matrix of sequencing depths for clone ID
    csv| json| rda| rds
    matrix|34 x 0
  658. cardelino::D_germline
    A matrix of sequencing depths
    csv| json| rda| rds
    matrix|34 x 0
  659. cardelino::D_input
    A matrix of sequencing depths
    csv| json| rda| rds
    matrix|439 x 151
  660. cardelino::tree
    A tree object
    rda| rds
    phylo
  661. cardelino::tree_3clone
    A tree object
    rda| rds
    phylo
  662. cardelino::tree_4clone
    A tree object
    rda| rds
    phylo
  663. cardelino::tree_5clone
    A tree object
    rda| rds
    phylo
  664. CardinalWorkflows::cardinal
    Cardinal Painting
    rda| rds
    MSImageSet
  665. CardinalWorkflows::cardinal.peaklist
    Cardinal Painting
    rda| rds
    MSImageSet
  666. CardinalWorkflows::cardinal.peaks
    Cardinal Painting
    rda| rds
    MSImageSet
  667. CardinalWorkflows::pig206
    Cross-Section of a Whole Pig Fetus
    rda| rds
    MSImageSet
  668. CardinalWorkflows::pig206.peaklist
    Cross-Section of a Whole Pig Fetus
    rda| rds
    MSImageSet
  669. CardinalWorkflows::pig206.peaks
    Cross-Section of a Whole Pig Fetus
    rda| rds
    MSImageSet
  670. CardinalWorkflows::rcc
    Human Renal Cell Carcinoma
    rda| rds
    MSImageSet
  671. CardinalWorkflows::rcc.resample
    Human Renal Cell Carcinoma
    rda| rds
    MSImageSet
  672. CardinalWorkflows::rcc.small
    Human Renal Cell Carcinoma
    rda| rds
    MSImageSet
  673. CARDspa::markerList
    marker gene list
    json| rda| rds
    list
  674. CARDspa::sc_count
    scRNA-seq count data
    rda| rds
    dgCMatrix
  675. CARDspa::sc_meta
    scRNAseq meta data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1926 x 3
  676. CARDspa::spatial_count
    Spatial transcriptomics count data
    rda| rds
    dgCMatrix
  677. CARDspa::spatial_location
    Spatial location data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|428 x 2
  678. carnation::degpatterns_dex
    A 'degPatterns' object for differentially expressed genes in the dexamethasone treatment comparison.
    rda| rds
    list
  679. carnation::eres_cell
    An 'enrichResult' object for differentially expressed genes in the cell line comparison.
    rda| rds
    enrichResult
  680. carnation::eres_dex
    An 'enrichResult' object for differentially expressed genes in the dexamethasone treatment comparison.
    rda| rds
    enrichResult
  681. carnation::res_cell
    A 'DESeqResults' object testing the difference between two cell lines of smooth muscle cells
    rda| rds
    DESeqResults
  682. carnation::res_dex
    A 'DESeqResults' object testing the effect of dexamethasone on smooth muscle cells
    rda| rds
    DESeqResults
  683. casper::distrsGSE37704
    Estimated read start and insert size distributions from MiSeq data in GEO dataset GSE37704.
    rda| rds
    list
  684. casper::hg19DB
    Subset of human genome (UCSC hg19 version)
    rda| rds
    annotatedGenome
  685. casper::K562.r1l1
    Toy RNA-seq data from RGASP project.
    json| rda| rds
    list
  686. CATALYST::isotope_list
    Example data sets
    json| rda| rds
    list
  687. CATALYST::merging_table
    Example data sets
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|20 x 2
  688. CATALYST::mp_cells
    Example data sets
    rda| rds
    flowFrame
  689. CATALYST::PBMC_fs
    Example data sets
    rda| rds
    flowSet
  690. CATALYST::PBMC_md
    Example data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 4
  691. CATALYST::PBMC_panel
    Example data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  692. CATALYST::raw_data
    Example data sets
    rda| rds
    flowSet
  693. CATALYST::sample_ff
    Example data sets
    rda| rds
    flowFrame
  694. CATALYST::sample_key
    Example data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 6
  695. CATALYST::ss_exp
    Example data sets
    rda| rds
    flowFrame
  696. categoryCompare::ccOpts
    Test data for 'categoryCompare'
    rda| rds
    ccOptions
  697. categoryCompare::ccResults
    Test data for 'categoryCompare'
    rda| rds
    ccCompareCollection
  698. categoryCompare::ccResultsBPHier
    Test data for 'categoryCompare'
    rda| rds
    ccCompareResult
  699. categoryCompare::enrichLists
    Test data for 'categoryCompare'
    rda| rds
    ccEnrichCollection
  700. categoryCompare::geneLists
    Test data for 'categoryCompare'
    csv| json| rda| rds
    ccGeneList
  701. categoryCompare::gseaRes
    Test data for 'categoryCompare'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|160 x 3
  702. categoryCompare::gUniverse
    Test data for 'categoryCompare'
    json| rda| rds
    character
  703. categoryCompare::table10
    Test data for 'categoryCompare'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 8
  704. categoryCompare::table48
    Test data for 'categoryCompare'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 8
  705. CatsCradle::exSeuratObj
    exSeuratObj
    rda| rds
    Seurat
  706. CatsCradle::humanLRN
    humanLRN
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|12019 x 2
  707. CatsCradle::ligandReceptorResults
    ligandReceptorResults
    rda| rds
    list
  708. CatsCradle::moransI
    moransI
    csv| xlsx| json| ndjson| rda| rds
    data.frame|248 x 2
  709. CatsCradle::moransILigandReceptor
    moransILigandReceptor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28 x 2
  710. CatsCradle::mouseLRN
    mouseLRN
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|11592 x 2
  711. CatsCradle::seuratCells
    seuratCells
    json| rda| rds
    integer
  712. CatsCradle::seuratGenes
    seuratGenes
    json| rda| rds
    character
  713. CatsCradle::smallXenium
    smallXenium
    rda| rds
    Seurat
  714. CatsCradle::xeniumCells
    xeniumCells
    json| rda| rds
    character
  715. CBNplot::exampleEaRes
    Example enrichment analysis result
    rda| rds
    enrichResult
  716. CBNplot::exampleGeneExp
    Example gene expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 100
  717. CCAFE::sampleDat
    PanUKBB and gnomAD Diabetes Data
    csv| xlsx| json| ndjson| rda| rds
    rowwise_df|500 x 11
  718. CCAFE::vcf_sample
    A VCF from this GWAS of Type 2 Diabetes https://doi.org/10.1038/s41588-018-0084-1. containing a subset of 10,000 variants
    rda| rds
    CollapsedVCF
  719. ccdata::cmap_es
    Effect size values for Connectivity Map build 02 drugs.
    csv| json| rda| rds
    matrix|13832 x 0
  720. ccdata::cmap_var
    Variance values for Connectivity Map build 02 drugs.
    csv| json| rda| rds
    matrix|13832 x 0
  721. ccdata::genes
    HGNC symbols used for NNet predictions.
    json| rda| rds
    character
  722. ccdata::l1000_es
    Effect size values for LINCS l1000 signatures.
    csv| json| rda| rds
    matrix|1001 x 0
  723. ccdata::net1
    Neural network model 1 for treatment combinations.
    json| rda| rds
    list
  724. ccdata::net2
    Neural network model 2 for treatment combinations.
    json| rda| rds
    list
  725. ccdata::xgb_mod
    XGBoost model for treatment combinations.
    rda| rds
    xgb.Booster
  726. CCl4::CCl4
    Carbon Tetrachloride (CCl4) treated hepatocytes
    rda| rds
    NChannelSet
  727. CCl4::CCl4_RGList
    Carbon Tetrachloride (CCl4) treated hepatocytes
    rda| rds
    RGList
  728. CCPlotR::toy_data
    Toy data for CCPlotR
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|735 x 5
  729. CCPlotR::toy_exp
    Toy expression data for CCPlotR
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|477 x 3
  730. CCPROMISE::exmplESet
    Example of Conceptual Expression Set
    rda| rds
    ExpressionSet
  731. CCPROMISE::exmplGeneSet
    Example of Conceptual Gene Annotation
    rda| rds
    GeneSetCollection
  732. CCPROMISE::exmplMSet
    Example of Conceptual Methylation Set
    rda| rds
    ExpressionSet
  733. CCPROMISE::exmplPat
    Example of Conceptual Phenotype Pattern Definition Set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 3
  734. CDI::one_batch_matrix
    Simulated count matrix from one batch
    csv| json| rda| rds
    matrix|3000 x 2000
  735. CDI::one_batch_matrix_celltype
    Cell type labels of simulated count matrix from one batch
    json| rda| rds
    character
  736. CDI::one_batch_matrix_label_df
    Clustering labels for simulated one-batch single-cell count matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 12
  737. CDI::two_batch_matrix
    Simulated count matrix from two batches
    csv| json| rda| rds
    matrix|3000 x 2000
  738. CDI::two_batch_matrix_batch
    Batch labels of simulated count matrix from two batches
    json| rda| rds
    character
  739. CDI::two_batch_matrix_celltype
    Cell type labels of simulated count matrix from two batches
    json| rda| rds
    character
  740. CDI::two_batch_matrix_label_df
    Clustering labels for simulated two-batch single-cell count matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 26
  741. celaref::de_table.demo_query
    Demo query de table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|800 x 13
  742. celaref::de_table.demo_ref
    Demo ref de table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|800 x 13
  743. celaref::demo_cell_info_table
    Demo cell info table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|515 x 4
  744. celaref::demo_counts_matrix
    Demo count matrix
    csv| json| rda| rds
    matrix|200 x 514
  745. celaref::demo_gene_info_table
    Demo gene info table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 2
  746. celaref::demo_microarray_expr
    Demo microarray expression table
    csv| json| rda| rds
    matrix|200 x 20
  747. celaref::demo_microarray_sample_sheet
    Demo microarray sample sheet table
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|20 x 2
  748. celaref::demo_query_se
    Demo query se (summarizedExperiment)
    rda| rds
    SummarizedExperiment
  749. celaref::demo_ref_se
    Demo reference se (summarizedExperiment)
    rda| rds
    SummarizedExperiment
  750. celda::celdaCGGridSearchRes
    celdaCGGridSearchRes
    rda| rds
    celdaList
  751. celda::celdaCGMod
    celdaCGmod
    rda| rds
    celda_CG
  752. celda::celdaCGSim
    celdaCGSim
    json| rda| rds
    list
  753. celda::celdaCMod
    celdaCMod
    rda| rds
    celda_C
  754. celda::celdaCSim
    celdaCSim
    json| rda| rds
    list
  755. celda::celdaGMod
    celdaGMod
    rda| rds
    celda_G
  756. celda::celdaGSim
    celdaGSim
    json| rda| rds
    list
  757. celda::contaminationSim
    contaminationSim
    json| rda| rds
    list
  758. celda::sampleCells
    sampleCells
    csv| json| rda| rds
    matrix|10 x 0
  759. celda::sceCeldaC
    sceCeldaC
    rda| rds
    SingleCellExperiment
  760. celda::sceCeldaCG
    sceCeldaCG
    rda| rds
    SingleCellExperiment
  761. celda::sceCeldaCGGridSearch
    sceCeldaCGGridSearch
    rda| rds
    SingleCellExperiment
  762. celda::sceCeldaG
    sceCeldaG
    rda| rds
    SingleCellExperiment
  763. CellBarcode::bc_obj
    A dummy BarcodeObj object
    rda| rds
    BarcodeObj
  764. CellBench::sample_sce_data
    This is data for testing functions in CellBench.
    rda| rds
    SingleCellExperiment
  765. cellity::extra_human_genes
    Additional human genes that are used in feature extraction
    json| rda| rds
    list
  766. cellity::extra_mouse_genes
    Additional mouse genes that are used in feature extraction
    json| rda| rds
    list
  767. cellity::feature_info
    Information which genes and GO categories should be included as features. Also defines which features are cell-type independent (common features)
    json| rda| rds
    list
  768. cellity::mES1_features
    Real test dataset containing all and common features from the paper (mES1)
    json| rda| rds
    list
  769. cellity::mES1_labels
    Real test dataset containing annotation of cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|672 x 3
  770. cellity::param_mES_all
    Parameters used for SVM classification
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 3
  771. cellity::param_mES_common
    Parameters used for SVM classification
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 3
  772. cellity::sample_counts
    Sample gene expression data containing 40 cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8979 x 40
  773. cellity::sample_stats
    Sample read statistics data containing 40 cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 35
  774. cellity::training_mES_features
    Original training dataset containing all and common features from the paper (training mES)
    json| rda| rds
    list
  775. cellity::training_mES_labels
    Original training dataset containing annotation of cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|960 x 3
  776. CellMapper::ExampleQueryGenes
    Example Gene Lists
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 4
  777. CellMapper::NegativeControlGenes
    Example Gene Lists
    json| rda| rds
    list
  778. CellMapper::PositiveControlGenes
    Example Gene Lists
    json| rda| rds
    list
  779. CellMentor::obj_toy
    Tiny prebuilt CSFNMF object for accessors (optional)
    rda| rds
    csfnmf
  780. CellMentor::qry_matrix_toy
    Tiny toy matrices and labels for runnable examples
    csv| json| rda| rds
    matrix|50 x 8
  781. CellMentor::ref_celltype_toy
    Tiny toy matrices and labels for runnable examples
    json| rda| rds
    character
  782. CellMentor::ref_matrix_toy
    Tiny toy matrices and labels for runnable examples
    csv| json| rda| rds
    matrix|50 x 12
  783. cellmig::d
    Example dataset 'd'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7560 x 6
  784. cellmig::d_mini
    Example dataset 'd'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2160 x 6
  785. cellmigRation::preProcCellMig
    Trajectories of 11 cells
    rda| rds
    CellMig
  786. cellmigRation::ThreeConditions
    Intermediates and Results from Cell Tracking Analyses
    rda| rds
    list
  787. cellmigRation::TrackCellsDataset
    Sample Stack of Fluorescent Cells
    rda| rds
    trackedCells
  788. cellmigRation::TrajectoryDataset
    Trajectories of 350 cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50216 x 4
  789. cellmigRation::WSADataset
    Trajectories of 147 cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11970 x 4
  790. cellNexus::pbmc3k_sce
    Sample SingleCellExperiment Object
    rda| rds
    SingleCellExperiment
  791. cellNexus::ui_choices
    Pre-computed UI Choices for Interface App
    json| rda| rds
    list
  792. CellNOptR::cnodata
    Get data from a CellNOpt data repository
    rda| rds
    CNOlist
  793. CellNOptR::CNOlistDREAM
    Data used for the DREAM3 challenge
    json| rda| rds
    list
  794. CellNOptR::CNOlistToy
    Toy data
    json| rda| rds
    list
  795. CellNOptR::CNOlistToy2
    Toy data with 2 time points
    json| rda| rds
    list
  796. CellNOptR::CNOlistToyMMB
    Toy data
    rda| rds
    CNOlist
  797. CellNOptR::DreamModel
    Model used for the DREAM3 challenge
    json| rda| rds
    list
  798. CellNOptR::pknmodel
    pknmodel
    json| rda| rds
    list
  799. CellNOptR::ToyModel
    Toy model
    json| rda| rds
    list
  800. CellNOptR::ToyModel2
    Toy model
    json| rda| rds
    list
  801. CellTrails::exSCE
    Example single-cell expression data
    rda| rds
    SingleCellExperiment
  802. CEMiTool::cem
    CEMiTool Object
    rda| rds
    CEMiTool
  803. CEMiTool::expr0
    Yellow Fever gene expression data from GEO study GSE13485
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4000 x 45
  804. CEMiTool::sample_annot
    Yellow Fever Sample Annotation data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45 x 2
  805. Cepo::cellbench
    cellbench
    rda| rds
    SingleCellExperiment
  806. Cepo::sce_pancreas
    sce_pancreas
    rda| rds
    SingleCellExperiment
  807. ceRNAnetsim::huge_example
    huge example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26176 x 7
  808. ceRNAnetsim::midsamp
    midsamp
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 7
  809. ceRNAnetsim::midsamp_new_counts
    midsamp_new_counts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 4
  810. ceRNAnetsim::minsamp
    minsamp
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 7
  811. ceRNAnetsim::mirtarbasegene
    mirtarbasegene
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|380627 x 2
  812. ceRNAnetsim::new_counts
    new_counts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 4
  813. ceRNAnetsim::TCGA_E9_A1N5_mirnanormal
    TCGA_E9_A1N5_mirnanormal
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|750 x 6
  814. ceRNAnetsim::TCGA_E9_A1N5_mirnatumor
    TCGA_E9_A1N5_mirnatumor
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|648 x 6
  815. ceRNAnetsim::TCGA_E9_A1N5_normal
    TCGA_E9_A1N5_normal
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|56830 x 7
  816. ceRNAnetsim::TCGA_E9_A1N5_tumor
    TCGA_E9_A1N5_tumor
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|56830 x 7
  817. CeTF::CeTFdemo
    CeTFdemo class object example
    rda| rds
    CeTF
  818. CeTF::enrichdemo
    Enrichment data
    json| rda| rds
    list
  819. CeTF::refGenes
    List of reference genes for 5 different organisms to perform enrichment
    csv| json| rda| rds
    list
  820. CeTF::RIF_input
    Regulatory Impact Factors (RIF) input
    csv| json| rda| rds
    matrix|154 x 20
  821. CeTF::simCounts
    Simulated counts data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21000 x 20
  822. CeTF::simNorm
    Simulated normalized data
    csv| json| rda| rds
    matrix|69 x 10
  823. CeTF::TFs
    Transcripition Factors data
    json| rda| rds
    character
  824. cfTools::beta_matrix
    Beta value matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 3
  825. cfTools::CancerDetector.markers
    Cancer-specific marker parameter
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1266 x 3
  826. cfTools::CancerDetector.reads
    Fragment-level methylation state for cancer detection
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9991 x 2
  827. cfTools::cfDeconvolve.markers
    Tissue-specific marker parameter
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 8
  828. cfTools::cfDeconvolve.reads
    Fragment-level methylation state for tissue deconvolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|942 x 2
  829. cfTools::cfsort_markers
    cfSort markers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|51035 x 4
  830. cfTools::cfsort_reads
    Fragment-level methylation state for cfSort tissue deconvolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|99999 x 2
  831. cfTools::CpG_OB_demo
    Methylation information for CpG on the original bottom strand (OB)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2224 x 5
  832. cfTools::CpG_OT_demo
    Methylation information for CpG on the original top strand (OT)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2556 x 5
  833. cfTools::demo.fragment_level.meth.bed
    Fragment-level methylation information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|552 x 9
  834. cfTools::demo.refo_frag.bed
    Fragment-level information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|559 x 6
  835. cfTools::demo.refo_meth.bed
    Methylation information on fragments
    csv| xlsx| json| ndjson| rda| rds
    data.frame|552 x 8
  836. cfTools::demo.sorted.bed
    Paired-end sequencing reads
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1117 x 6
  837. cfTools::marker_index
    Marker name
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 1
  838. cfTools::markers.bed
    Genomic postions of markers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 4
  839. cfTools::sample_type
    Sample type
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 1
  840. CGEN::LocusMapData
    Locus map data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|230 x 3
  841. CGEN::Xdata
    Sample covariate and outcome data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1579 x 10
  842. CGEN::Xdata2
    Sample covariate and outcome data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11449 x 8
  843. CGHbase::Wilting
    Cervical cancer arrayCGH data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4127 x 9
  844. CGHbase::WiltingCalled
    Cervical cancer arrayCGH data called with CGHcall
    rda| rds
    cghCall
  845. CGHbase::WiltingNorm
    Normalized log2 ratios from cervical cancer arrayCGH data.
    rda| rds
    cghRaw
  846. CGHbase::WiltingRaw
    Raw log2 ratios from cervical cancer arrayCGH data.
    rda| rds
    cghRaw
  847. CGHbase::WiltingRegions
    Regions of cervical cancer arrayCGH data as defined by CGHregions
    rda| rds
    cghRegions
  848. CGHbase::WiltingSeg
    Segmented log2 ratios from cervical cancer arrayCGH data.
    rda| rds
    cghSeg
  849. CGHcall::Wilting
    Cervical cancer arrayCGH data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4127 x 9
  850. cghMCR::segData
    The constructor for the cghMCR class
    rda| rds
    DNAcopy
  851. CGHnormaliter::Leukemia
    Array CGH experiment data on childhood acute lymphoblastic leukemia (ALL) in humans
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30180 x 10
  852. ChAMPdata::bloodCtl
    Blood Control data
    rda| rds
    list
  853. ChAMPdata::CellTypeMeans27K
    Cell-type purified whole blood methylation CpG Sites for use with the RefBaseEWAS cell-type correction function.
    csv| json| rda| rds
    matrix|500 x 6
  854. ChAMPdata::CellTypeMeans450K
    Cell-type purified whole blood methylation CpG Sites for use with the RefBaseEWAS cell-type correction function.
    csv| json| rda| rds
    matrix|600 x 6
  855. ChAMPdata::EPIC.manifest.hg19
    SNP annotation for EPIC array.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|865918 x 57
  856. ChAMPdata::EPIC.manifest.pop.hg19
    SNP annotation for EPIC array for different population.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|865918 x 66
  857. ChAMPdata::hm450.manifest.hg19
    SNP annotation for 450K array.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485577 x 57
  858. ChAMPdata::hm450.manifest.pop.hg19
    SNP annotation for 450K array for different population. Data is based on hg19.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485577 x 66
  859. ChAMPdata::illumina450Gr
    GRange Struct of illumina 450K array.
    rda| rds
    GRanges
  860. ChAMPdata::MatchGeneName
    MatchGeneName
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33483 x 2
  861. ChAMPdata::multi.hit
    multi.hit information.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9341 x 38
  862. ChAMPdata::PathwayList
    PathwayList, used in champ.GSEA()
    json| rda| rds
    list
  863. ChAMPdata::probe.features
    probe.features
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485577 x 14
  864. ChAMPdata::probeInfoALL.lv
    Probe Info Data for use with the BMIQ normalization.
    csv| json| rda| rds
    list
  865. ChAMPdata::snp.hit
    CpG site related to SNP sites information.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29481 x 38
  866. ChemmineR::apfp
    Frequent Atom Pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4096 x 2
  867. ChemmineR::apset
    Atom pairs stored in 'APset' object
    rda| rds
    APset
  868. ChemmineR::atomprop
    Standard atomic weights
    csv| xlsx| json| ndjson| rda| rds
    data.frame|118 x 6
  869. ChemmineR::pubchemFPencoding
    Enncoding of PubChem Fingerprints
    csv| xlsx| json| ndjson| rda| rds
    data.frame|881 x 2
  870. ChemmineR::sdfsample
    SD file in 'SDFset' object
    rda| rds
    SDFset
  871. ChemmineR::smisample
    SMILES file in 'SMIset' object
    rda| rds
    SMIset
  872. CHETAH::headneck_ref
    A SingleCellExperiment with celltypes in the "celltypes" colData. A subset of the Head-Neck data from Puram et al. (2017) Cancer Cell.
    rda| rds
    SingleCellExperiment
  873. CHETAH::input_mel
    A SingleCellExperiment on which CHEATHclassifier is run using the 'headneck_ref' It holds subset of the Melanoma data, from Tirosh et al. (2016), Science.
    rda| rds
    SingleCellExperiment
  874. chevreulPlot::cc.genes.cyclone
    Cyclone cell cycle pairs by symbol
    csv| json| rda| rds
    list
  875. chevreulPlot::ensembl_version
    Ensembl version used for build
    json| rda| rds
    character
  876. chevreulPlot::grch38
    Human annotation data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|76062 x 9
  877. chevreulPlot::grch38_tx2gene
    Human transcripts to genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|277081 x 2
  878. chevreulPlot::human_to_mouse_homologs
    Gene Homologs Between Human and Mouse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23188 x 2
  879. chevreulPlot::small_example_dataset
    Small example SingleCellExperiment
    rda| rds
    SingleCellExperiment
  880. chevreulPlot::tiny_sce
    Tiny example SingleCellExperiment
    rda| rds
    SingleCellExperiment
  881. chevreulProcess::cc.genes.cyclone
    Cyclone cell cycle pairs by symbol
    csv| json| rda| rds
    list
  882. chevreulProcess::ensembl_version
    Ensembl version used for build
    json| rda| rds
    character
  883. chevreulProcess::grch38
    Human annotation data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|76062 x 9
  884. chevreulProcess::grch38_tx2gene
    Human transcripts to genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|277081 x 2
  885. chevreulProcess::human_to_mouse_homologs
    Gene Homologs Between Human and Mouse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23188 x 2
  886. chevreulProcess::small_example_dataset
    Small example SingleCellExperiment
    rda| rds
    SingleCellExperiment
  887. chevreulProcess::tiny_sce
    Tiny example SingleCellExperiment
    rda| rds
    SingleCellExperiment
  888. chevreulShiny::cc.genes.cyclone
    Cyclone cell cycle pairs by symbol
    csv| json| rda| rds
    list
  889. chevreulShiny::ensembl_version
    Ensembl version used for build
    json| rda| rds
    character
  890. chevreulShiny::grch38
    Human annotation data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|76062 x 9
  891. chevreulShiny::grch38_tx2gene
    Human transcripts to genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|277081 x 2
  892. chevreulShiny::human_to_mouse_homologs
    Gene Homologs Between Human and Mouse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23188 x 2
  893. chevreulShiny::small_example_dataset
    Small example SingleCellExperiment
    rda| rds
    SingleCellExperiment
  894. chevreulShiny::tiny_sce
    Tiny example SingleCellExperiment
    rda| rds
    SingleCellExperiment
  895. Chicago::cdUnitTest
    ChicagoData object for unit testing
    rda| rds
    chicagoData
  896. ChIPanalyser::Access
    ChIPanalyserData
    rda| rds
    GRanges
  897. ChIPanalyser::chip
    ChIPanalyserData
    rda| rds
    GRanges
  898. ChIPanalyser::cs
    ChIPanalyserData
    rda| rds
    UCSCData
  899. ChIPanalyser::geneRef
    ChIPanalyserData
    rda| rds
    GRanges
  900. ChIPanalyser::top
    ChIPanalyserData
    rda| rds
    GRanges
  901. chipenrich.data::enhancer.dnase_thurman.0
    Enhancer locations
    rda| rds
    GRanges
  902. chipenrich.data::enhancer.hg19
    rda| rds
    GRanges
  903. chipenrich.data::enhancer.hg38
    rda| rds
    GRanges
  904. chipenrich.data::gene.enh.desc
    Gene-Enhancer descriptives
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19336 x 3
  905. chipenrich.data::gene.enh.desc
    Gene-Enhancer descriptives
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19336 x 3
  906. chipenrich.data::gene.enh.desc
    Gene-Enhancer descriptives
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19336 x 3
  907. chipenrich.data::gene.enh.desc.hg19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21600 x 4
  908. chipenrich.data::geneset.biocarta_pathway.hsa
    geneset.biocarta_pathway.hsa genesets for BioCarta
    rda| rds
    GeneSet
  909. chipenrich.data::geneset.biocarta_pathway.mmu
    geneset.biocarta_pathway.mmu
    rda| rds
    GeneSet
  910. chipenrich.data::geneset.biocarta_pathway.rno
    geneset.biocarta_pathway.rno
    rda| rds
    GeneSet
  911. chipenrich.data::geneset.cellType.hsa
    rda| rds
    GeneSet
  912. chipenrich.data::geneset.ctd.hsa
    geneset.ctd.hsa genesets for Comparative Toxicogenomics Database
    rda| rds
    GeneSet
  913. chipenrich.data::geneset.ctd.mmu
    geneset.ctd.mmu genesets for Comparative Toxicogenomics Database
    rda| rds
    GeneSet
  914. chipenrich.data::geneset.cytoband.hsa
    geneset.cytoband.hsa
    rda| rds
    GeneSet
  915. chipenrich.data::geneset.drug_bank.hsa
    geneset.drug_bank.hsa genesets for DrugBank
    rda| rds
    GeneSet
  916. chipenrich.data::geneset.drug_bank.mmu
    geneset.drug_bank.mmu
    rda| rds
    GeneSet
  917. chipenrich.data::geneset.drug_bank.rno
    geneset.drug_bank.rno
    rda| rds
    GeneSet
  918. chipenrich.data::geneset.GOBP.dme
    geneset.GOBP.dme genesets for Drosophila melanogaster
    rda| rds
    GeneSet
  919. chipenrich.data::geneset.GOBP.dre
    geneset.GOBP.dre genesets for Danio rerio
    rda| rds
    GeneSet
  920. chipenrich.data::geneset.GOBP.hsa
    geneset.GOBP.hsa genesets for Homo sapiens
    rda| rds
    GeneSet
  921. chipenrich.data::geneset.GOBP.mmu
    geneset.GOBP.mmu genesets for Mus musculus
    rda| rds
    GeneSet
  922. chipenrich.data::geneset.GOBP.rno
    geneset.GOBP.rno genesets for Rattus norvegicus
    rda| rds
    GeneSet
  923. chipenrich.data::geneset.GOCC.dme
    geneset.GOCC.dme genesets for Drosophila melanogaster
    rda| rds
    GeneSet
  924. chipenrich.data::geneset.GOCC.dre
    geneset.GOCC.dre genesets for Danio rerio
    rda| rds
    GeneSet
  925. chipenrich.data::geneset.GOCC.hsa
    geneset.GOCC.hsa genesets for Homo sapiens
    rda| rds
    GeneSet
  926. chipenrich.data::geneset.GOCC.mmu
    geneset.GOCC.mmu genesets for Mus musculus
    rda| rds
    GeneSet
  927. chipenrich.data::geneset.GOCC.rno
    geneset.GOCC.rno genesets for Rattus norvegicus
    rda| rds
    GeneSet
  928. chipenrich.data::geneset.GOMF.dme
    geneset.GOMF.dme genesets for Drosophila melanogaster
    rda| rds
    GeneSet
  929. chipenrich.data::geneset.GOMF.dre
    geneset.GOMF.dre genesets for Danio rerio
    rda| rds
    GeneSet
  930. chipenrich.data::geneset.GOMF.hsa
    geneset.GOMF.hsa genesets for Homo sapiens
    rda| rds
    GeneSet
  931. chipenrich.data::geneset.GOMF.mmu
    geneset.GOMF.mmu genesets for Mus musculus
    rda| rds
    GeneSet
  932. chipenrich.data::geneset.GOMF.rno
    geneset.GOMF.rno genesets for Rattus norvegicus
    rda| rds
    GeneSet
  933. chipenrich.data::geneset.hallmark.hsa
    geneset.hallmark.hsa genesets for Hallmark (MSigDB)
    rda| rds
    GeneSet
  934. chipenrich.data::geneset.immunologic.hsa
    geneset.immunologic.hsa genesets for Immunologic Signatures (MSigDB)
    rda| rds
    GeneSet
  935. chipenrich.data::geneset.kegg_pathway.hsa
    geneset.kegg_pathway.hsa genesets for KEGG Pathways
    rda| rds
    GeneSet
  936. chipenrich.data::geneset.kegg_pathway.mmu
    geneset.kegg_pathway.mmu
    rda| rds
    GeneSet
  937. chipenrich.data::geneset.kegg_pathway.rno
    geneset.kegg_pathway.rno
    rda| rds
    GeneSet
  938. chipenrich.data::geneset.mesh.hsa
    geneset.mesh.hsa
    rda| rds
    GeneSet
  939. chipenrich.data::geneset.mesh.mmu
    geneset.mesh.mmu
    rda| rds
    GeneSet
  940. chipenrich.data::geneset.mesh.rno
    geneset.mesh.rno
    rda| rds
    GeneSet
  941. chipenrich.data::geneset.metabolite.hsa
    geneset.metabolite.hsa
    rda| rds
    GeneSet
  942. chipenrich.data::geneset.metabolite.mmu
    geneset.metabolite.mmu
    rda| rds
    GeneSet
  943. chipenrich.data::geneset.metabolite.rno
    geneset.metabolite.rno
    rda| rds
    GeneSet
  944. chipenrich.data::geneset.microrna.hsa
    geneset.microrna.hsa genesets for MicroRNA Targets (MSigDB)
    rda| rds
    GeneSet
  945. chipenrich.data::geneset.oncogenic.hsa
    geneset.oncogenic.hsa genesets for Oncogenic Signatures (MSigDB)
    rda| rds
    GeneSet
  946. chipenrich.data::geneset.panther_pathway.hsa
    geneset.panther_pathway.hsa
    rda| rds
    GeneSet
  947. chipenrich.data::geneset.panther_pathway.mmu
    geneset.panther_pathway.mmu
    rda| rds
    GeneSet
  948. chipenrich.data::geneset.panther_pathway.rno
    geneset.panther_pathway.rno
    rda| rds
    GeneSet
  949. chipenrich.data::geneset.pfam.hsa
    geneset.pfam.hsa genesets for Pfam
    rda| rds
    GeneSet
  950. chipenrich.data::geneset.pfam.mmu
    geneset.pfam.mmu
    rda| rds
    GeneSet
  951. chipenrich.data::geneset.pfam.rno
    geneset.pfam.rno
    rda| rds
    GeneSet
  952. chipenrich.data::geneset.protein_interaction_biogrid.hsa
    geneset.protein_interaction_biogrid.hsa genesets for BioGRID Protein Interactions
    rda| rds
    GeneSet
  953. chipenrich.data::geneset.reactome.dme
    geneset.reactome.dme genesets for Drosophila melanogaster
    rda| rds
    GeneSet
  954. chipenrich.data::geneset.reactome.dre
    geneset.reactome.dre genesets for Danio rerio
    rda| rds
    GeneSet
  955. chipenrich.data::geneset.reactome.hsa
    geneset.reactome.hsa genesets for Homo sapiens
    rda| rds
    GeneSet
  956. chipenrich.data::geneset.reactome.mmu
    geneset.reactome.mmu genesets for Mus musculus
    rda| rds
    GeneSet
  957. chipenrich.data::geneset.reactome.rno
    geneset.reactome.rno genesets for Rattus norvegicus
    rda| rds
    GeneSet
  958. chipenrich.data::geneset.transcription_factors.hsa
    geneset.transcription_factors.hsa genesets for Transcription Factor Targets (MSigDB)
    rda| rds
    GeneSet
  959. chipenrich.data::geneset.transcription_factors.mmu
    geneset.transcription_factors.mmu
    rda| rds
    GeneSet
  960. chipenrich.data::geneset.transcription_factors.rno
    geneset.transcription_factors.rno
    rda| rds
    GeneSet
  961. chipenrich.data::locusdef.danRer10.10kb
    locusdef.danRer10.10kb locus definition
    rda| rds
    LocusDefinition
  962. chipenrich.data::locusdef.danRer10.10kb_outside
    locusdef.danRer10.10kb_outside locus definition
    rda| rds
    LocusDefinition
  963. chipenrich.data::locusdef.danRer10.10kb_outside_upstream
    locusdef.danRer10.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  964. chipenrich.data::locusdef.danRer10.1kb
    locusdef.danRer10.1kb locus definition
    rda| rds
    LocusDefinition
  965. chipenrich.data::locusdef.danRer10.1kb_outside
    locusdef.danRer10.1kb_outside locus definition
    rda| rds
    LocusDefinition
  966. chipenrich.data::locusdef.danRer10.1kb_outside_upstream
    locusdef.danRer10.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  967. chipenrich.data::locusdef.danRer10.5kb
    locusdef.danRer10.5kb locus definition
    rda| rds
    LocusDefinition
  968. chipenrich.data::locusdef.danRer10.5kb_outside
    locusdef.danRer10.5kb_outside locus definition
    rda| rds
    LocusDefinition
  969. chipenrich.data::locusdef.danRer10.5kb_outside_upstream
    locusdef.danRer10.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  970. chipenrich.data::locusdef.danRer10.exon
    locusdef.danRer10.exon locus definition
    rda| rds
    LocusDefinition
  971. chipenrich.data::locusdef.danRer10.intron
    locusdef.danRer10.intron locus definition
    rda| rds
    LocusDefinition
  972. chipenrich.data::locusdef.danRer10.nearest_gene
    locusdef.danRer10.nearest_gene locus definition
    rda| rds
    LocusDefinition
  973. chipenrich.data::locusdef.danRer10.nearest_tss
    locusdef.danRer10.nearest_tss locus definition
    rda| rds
    LocusDefinition
  974. chipenrich.data::locusdef.dm3.10kb
    locusdef.dm3.10kb locus definition
    rda| rds
    LocusDefinition
  975. chipenrich.data::locusdef.dm3.10kb_outside
    locusdef.dm3.10kb_outside locus definition
    rda| rds
    LocusDefinition
  976. chipenrich.data::locusdef.dm3.10kb_outside_upstream
    locusdef.dm3.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  977. chipenrich.data::locusdef.dm3.1kb
    locusdef.dm3.1kb locus definition
    rda| rds
    LocusDefinition
  978. chipenrich.data::locusdef.dm3.1kb_outside
    locusdef.dm3.1kb_outside locus definition
    rda| rds
    LocusDefinition
  979. chipenrich.data::locusdef.dm3.1kb_outside_upstream
    locusdef.dm3.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  980. chipenrich.data::locusdef.dm3.5kb
    locusdef.dm3.5kb locus definition
    rda| rds
    LocusDefinition
  981. chipenrich.data::locusdef.dm3.5kb_outside
    locusdef.dm3.5kb_outside locus definition
    rda| rds
    LocusDefinition
  982. chipenrich.data::locusdef.dm3.5kb_outside_upstream
    locusdef.dm3.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  983. chipenrich.data::locusdef.dm3.exon
    locusdef.dm3.exon locus definition
    rda| rds
    LocusDefinition
  984. chipenrich.data::locusdef.dm3.intron
    locusdef.dm3.intron locus definition
    rda| rds
    LocusDefinition
  985. chipenrich.data::locusdef.dm3.nearest_gene
    locusdef.dm3.nearest_gene locus definition
    rda| rds
    LocusDefinition
  986. chipenrich.data::locusdef.dm3.nearest_tss
    locusdef.dm3.nearest_tss locus definition
    rda| rds
    LocusDefinition
  987. chipenrich.data::locusdef.dm6.10kb
    locusdef.dm6.10kb locus definition
    rda| rds
    LocusDefinition
  988. chipenrich.data::locusdef.dm6.10kb_outside
    locusdef.dm6.10kb_outside locus definition
    rda| rds
    LocusDefinition
  989. chipenrich.data::locusdef.dm6.10kb_outside_upstream
    locusdef.dm6.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  990. chipenrich.data::locusdef.dm6.1kb
    locusdef.dm6.1kb locus definition
    rda| rds
    LocusDefinition
  991. chipenrich.data::locusdef.dm6.1kb_outside
    locusdef.dm6.1kb_outside locus definition
    rda| rds
    LocusDefinition
  992. chipenrich.data::locusdef.dm6.1kb_outside_upstream
    locusdef.dm6.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  993. chipenrich.data::locusdef.dm6.5kb
    locusdef.dm6.5kb locus definition
    rda| rds
    LocusDefinition
  994. chipenrich.data::locusdef.dm6.5kb_outside
    locusdef.dm6.5kb_outside locus definition
    rda| rds
    LocusDefinition
  995. chipenrich.data::locusdef.dm6.5kb_outside_upstream
    locusdef.dm6.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  996. chipenrich.data::locusdef.dm6.exon
    locusdef.dm6.exon locus definition
    rda| rds
    LocusDefinition
  997. chipenrich.data::locusdef.dm6.intron
    locusdef.dm6.intron locus definition
    rda| rds
    LocusDefinition
  998. chipenrich.data::locusdef.dm6.nearest_gene
    locusdef.dm6.nearest_gene locus definition
    rda| rds
    LocusDefinition
  999. chipenrich.data::locusdef.dm6.nearest_tss
    locusdef.dm6.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1000. chipenrich.data::locusdef.hg19.10kb
    locusdef.hg19.10kb locus definition
    rda| rds
    LocusDefinition
  1001. chipenrich.data::locusdef.hg19.10kb_outside
    locusdef.hg19.10kb_outside locus definition
    rda| rds
    LocusDefinition
  1002. chipenrich.data::locusdef.hg19.10kb_outside_upstream
    locusdef.hg19.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1003. chipenrich.data::locusdef.hg19.1kb
    locusdef.hg19.1kb locus definition
    rda| rds
    LocusDefinition
  1004. chipenrich.data::locusdef.hg19.1kb_outside
    locusdef.hg19.1kb_outside locus definition
    rda| rds
    LocusDefinition
  1005. chipenrich.data::locusdef.hg19.1kb_outside_upstream
    locusdef.hg19.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1006. chipenrich.data::locusdef.hg19.5kb
    locusdef.hg19.5kb locus definition
    rda| rds
    LocusDefinition
  1007. chipenrich.data::locusdef.hg19.5kb_outside
    locusdef.hg19.5kb_outside locus definition
    rda| rds
    LocusDefinition
  1008. chipenrich.data::locusdef.hg19.5kb_outside_upstream
    locusdef.hg19.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1009. chipenrich.data::locusdef.hg19.enhancer
    rda| rds
    LocusDefinition
  1010. chipenrich.data::locusdef.hg19.enhancer_plus5kb
    rda| rds
    LocusDefinition
  1011. chipenrich.data::locusdef.hg19.exon
    locusdef.hg19.exon locus definition
    rda| rds
    LocusDefinition
  1012. chipenrich.data::locusdef.hg19.intron
    locusdef.hg19.intron locus definition
    rda| rds
    LocusDefinition
  1013. chipenrich.data::locusdef.hg19.nearest_gene
    locusdef.hg19.nearest_gene locus definition
    rda| rds
    LocusDefinition
  1014. chipenrich.data::locusdef.hg19.nearest_tss
    locusdef.hg19.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1015. chipenrich.data::locusdef.hg38.10kb
    locusdef.hg38.10kb locus definition
    rda| rds
    LocusDefinition
  1016. chipenrich.data::locusdef.hg38.10kb_outside
    locusdef.hg38.10kb_outside locus definition
    rda| rds
    LocusDefinition
  1017. chipenrich.data::locusdef.hg38.10kb_outside_upstream
    locusdef.hg38.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1018. chipenrich.data::locusdef.hg38.1kb
    locusdef.hg38.1kb locus definition
    rda| rds
    LocusDefinition
  1019. chipenrich.data::locusdef.hg38.1kb_outside
    locusdef.hg38.1kb_outside locus definition
    rda| rds
    LocusDefinition
  1020. chipenrich.data::locusdef.hg38.1kb_outside_upstream
    locusdef.hg38.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1021. chipenrich.data::locusdef.hg38.5kb
    locusdef.hg38.5kb locus definition
    rda| rds
    LocusDefinition
  1022. chipenrich.data::locusdef.hg38.5kb_outside
    locusdef.hg38.5kb_outside locus definition
    rda| rds
    LocusDefinition
  1023. chipenrich.data::locusdef.hg38.5kb_outside_upstream
    locusdef.hg38.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1024. chipenrich.data::locusdef.hg38.enhancer
    rda| rds
    LocusDefinition
  1025. chipenrich.data::locusdef.hg38.enhancer_plus5kb
    rda| rds
    LocusDefinition
  1026. chipenrich.data::locusdef.hg38.exon
    locusdef.hg38.exon locus definition
    rda| rds
    LocusDefinition
  1027. chipenrich.data::locusdef.hg38.intron
    locusdef.hg38.intron locus definition
    rda| rds
    LocusDefinition
  1028. chipenrich.data::locusdef.hg38.nearest_gene
    locusdef.hg38.nearest_gene locus definition
    rda| rds
    LocusDefinition
  1029. chipenrich.data::locusdef.hg38.nearest_tss
    locusdef.hg38.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1030. chipenrich.data::locusdef.mm10.10kb
    locusdef.mm10.10kb locus definition
    rda| rds
    LocusDefinition
  1031. chipenrich.data::locusdef.mm10.10kb_outside
    locusdef.mm10.10kb_outside locus definition
    rda| rds
    LocusDefinition
  1032. chipenrich.data::locusdef.mm10.10kb_outside_upstream
    locusdef.mm10.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1033. chipenrich.data::locusdef.mm10.1kb
    locusdef.mm10.1kb locus definition
    rda| rds
    LocusDefinition
  1034. chipenrich.data::locusdef.mm10.1kb_outside
    locusdef.mm10.1kb_outside locus definition
    rda| rds
    LocusDefinition
  1035. chipenrich.data::locusdef.mm10.1kb_outside_upstream
    locusdef.mm10.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1036. chipenrich.data::locusdef.mm10.5kb
    locusdef.mm10.5kb locus definition
    rda| rds
    LocusDefinition
  1037. chipenrich.data::locusdef.mm10.5kb_outside
    locusdef.mm10.5kb_outside locus definition
    rda| rds
    LocusDefinition
  1038. chipenrich.data::locusdef.mm10.5kb_outside_upstream
    locusdef.mm10.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1039. chipenrich.data::locusdef.mm10.exon
    locusdef.mm10.exon locus definition
    rda| rds
    LocusDefinition
  1040. chipenrich.data::locusdef.mm10.intron
    locusdef.mm10.intron locus definition
    rda| rds
    LocusDefinition
  1041. chipenrich.data::locusdef.mm10.nearest_gene
    locusdef.mm10.nearest_gene locus definition
    rda| rds
    LocusDefinition
  1042. chipenrich.data::locusdef.mm10.nearest_tss
    locusdef.mm10.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1043. chipenrich.data::locusdef.mm9.10kb
    locusdef.mm9.10kb locus definition
    rda| rds
    LocusDefinition
  1044. chipenrich.data::locusdef.mm9.10kb_outside
    locusdef.mm9.10kb_outside locus definition
    rda| rds
    LocusDefinition
  1045. chipenrich.data::locusdef.mm9.10kb_outside_upstream
    locusdef.mm9.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1046. chipenrich.data::locusdef.mm9.1kb
    locusdef.mm9.1kb locus definition
    rda| rds
    LocusDefinition
  1047. chipenrich.data::locusdef.mm9.1kb_outside
    locusdef.mm9.1kb_outside locus definition
    rda| rds
    LocusDefinition
  1048. chipenrich.data::locusdef.mm9.1kb_outside_upstream
    locusdef.mm9.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1049. chipenrich.data::locusdef.mm9.5kb
    locusdef.mm9.5kb locus definition
    rda| rds
    LocusDefinition
  1050. chipenrich.data::locusdef.mm9.5kb_outside
    locusdef.mm9.5kb_outside locus definition
    rda| rds
    LocusDefinition
  1051. chipenrich.data::locusdef.mm9.5kb_outside_upstream
    locusdef.mm9.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1052. chipenrich.data::locusdef.mm9.exon
    locusdef.mm9.exon locus definition
    rda| rds
    LocusDefinition
  1053. chipenrich.data::locusdef.mm9.intron
    locusdef.mm9.intron locus definition
    rda| rds
    LocusDefinition
  1054. chipenrich.data::locusdef.mm9.nearest_gene
    locusdef.mm9.nearest_gene locus definition
    rda| rds
    LocusDefinition
  1055. chipenrich.data::locusdef.mm9.nearest_tss
    locusdef.mm9.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1056. chipenrich.data::locusdef.rn4.10kb
    locusdef.rn4.10kb locus definition
    rda| rds
    LocusDefinition
  1057. chipenrich.data::locusdef.rn4.10kb_outside
    locusdef.rn4.10kb_outside locus definition
    rda| rds
    LocusDefinition
  1058. chipenrich.data::locusdef.rn4.10kb_outside_upstream
    locusdef.rn4.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1059. chipenrich.data::locusdef.rn4.1kb
    locusdef.rn4.1kb locus definition
    rda| rds
    LocusDefinition
  1060. chipenrich.data::locusdef.rn4.1kb_outside
    locusdef.rn4.1kb_outside locus definition
    rda| rds
    LocusDefinition
  1061. chipenrich.data::locusdef.rn4.1kb_outside_upstream
    locusdef.rn4.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1062. chipenrich.data::locusdef.rn4.5kb
    locusdef.rn4.5kb locus definition
    rda| rds
    LocusDefinition
  1063. chipenrich.data::locusdef.rn4.5kb_outside
    locusdef.rn4.5kb_outside locus definition
    rda| rds
    LocusDefinition
  1064. chipenrich.data::locusdef.rn4.5kb_outside_upstream
    locusdef.rn4.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1065. chipenrich.data::locusdef.rn4.exon
    locusdef.rn4.exon locus definition
    rda| rds
    LocusDefinition
  1066. chipenrich.data::locusdef.rn4.intron
    locusdef.rn4.intron locus definition
    rda| rds
    LocusDefinition
  1067. chipenrich.data::locusdef.rn4.nearest_gene
    locusdef.rn4.nearest_gene locus definition
    rda| rds
    LocusDefinition
  1068. chipenrich.data::locusdef.rn4.nearest_tss
    locusdef.rn4.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1069. chipenrich.data::locusdef.rn5.10kb
    locusdef.rn5.10kb locus definition
    rda| rds
    LocusDefinition
  1070. chipenrich.data::locusdef.rn5.10kb_outside
    locusdef.rn5.10kb_outside locus definition
    rda| rds
    LocusDefinition
  1071. chipenrich.data::locusdef.rn5.10kb_outside_upstream
    locusdef.rn5.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1072. chipenrich.data::locusdef.rn5.1kb
    locusdef.rn5.1kb locus definition
    rda| rds
    LocusDefinition
  1073. chipenrich.data::locusdef.rn5.1kb_outside
    locusdef.rn5.1kb_outside locus definition
    rda| rds
    LocusDefinition
  1074. chipenrich.data::locusdef.rn5.1kb_outside_upstream
    locusdef.rn5.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1075. chipenrich.data::locusdef.rn5.5kb
    locusdef.rn5.5kb locus definition
    rda| rds
    LocusDefinition
  1076. chipenrich.data::locusdef.rn5.5kb_outside
    locusdef.rn5.5kb_outside locus definition
    rda| rds
    LocusDefinition
  1077. chipenrich.data::locusdef.rn5.5kb_outside_upstream
    locusdef.rn5.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1078. chipenrich.data::locusdef.rn5.exon
    locusdef.rn5.exon locus definition
    rda| rds
    LocusDefinition
  1079. chipenrich.data::locusdef.rn5.intron
    locusdef.rn5.intron locus definition
    rda| rds
    LocusDefinition
  1080. chipenrich.data::locusdef.rn5.nearest_gene
    locusdef.rn5.nearest_gene locus definition
    rda| rds
    LocusDefinition
  1081. chipenrich.data::locusdef.rn5.nearest_tss
    locusdef.rn5.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1082. chipenrich.data::locusdef.rn6.10kb
    locusdef.rn6.10kb locus definition
    rda| rds
    LocusDefinition
  1083. chipenrich.data::locusdef.rn6.10kb_outside
    locusdef.rn6.10kb_outside locus definition
    rda| rds
    LocusDefinition
  1084. chipenrich.data::locusdef.rn6.10kb_outside_upstream
    locusdef.rn6.10kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1085. chipenrich.data::locusdef.rn6.1kb
    locusdef.rn6.1kb locus definition
    rda| rds
    LocusDefinition
  1086. chipenrich.data::locusdef.rn6.1kb_outside
    locusdef.rn6.1kb_outside locus definition
    rda| rds
    LocusDefinition
  1087. chipenrich.data::locusdef.rn6.1kb_outside_upstream
    locusdef.rn6.1kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1088. chipenrich.data::locusdef.rn6.5kb
    locusdef.rn6.5kb locus definition
    rda| rds
    LocusDefinition
  1089. chipenrich.data::locusdef.rn6.5kb_outside
    locusdef.rn6.5kb_outside locus definition
    rda| rds
    LocusDefinition
  1090. chipenrich.data::locusdef.rn6.5kb_outside_upstream
    locusdef.rn6.5kb_outside_upstream locus definition
    rda| rds
    LocusDefinition
  1091. chipenrich.data::locusdef.rn6.exon
    locusdef.rn6.exon locus definition
    rda| rds
    LocusDefinition
  1092. chipenrich.data::locusdef.rn6.intron
    locusdef.rn6.intron locus definition
    rda| rds
    LocusDefinition
  1093. chipenrich.data::locusdef.rn6.nearest_gene
    locusdef.rn6.nearest_gene locus definition
    rda| rds
    LocusDefinition
  1094. chipenrich.data::locusdef.rn6.nearest_tss
    locusdef.rn6.nearest_tss locus definition
    rda| rds
    LocusDefinition
  1095. chipenrich.data::mappa.hg19.10kb.100mer
    mappa.hg19.10kb.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1096. chipenrich.data::mappa.hg19.10kb.24mer
    mappa.hg19.10kb.24mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1097. chipenrich.data::mappa.hg19.10kb.36mer
    mappa.hg19.10kb.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1098. chipenrich.data::mappa.hg19.10kb.40mer
    mappa.hg19.10kb.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1099. chipenrich.data::mappa.hg19.10kb.50mer
    mappa.hg19.10kb.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1100. chipenrich.data::mappa.hg19.10kb.75mer
    mappa.hg19.10kb.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1101. chipenrich.data::mappa.hg19.1kb.100mer
    mappa.hg19.1kb.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1102. chipenrich.data::mappa.hg19.1kb.24mer
    mappa.hg19.1kb.24mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1103. chipenrich.data::mappa.hg19.1kb.36mer
    mappa.hg19.1kb.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1104. chipenrich.data::mappa.hg19.1kb.40mer
    mappa.hg19.1kb.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1105. chipenrich.data::mappa.hg19.1kb.50mer
    mappa.hg19.1kb.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1106. chipenrich.data::mappa.hg19.1kb.75mer
    mappa.hg19.1kb.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1107. chipenrich.data::mappa.hg19.5kb.100mer
    mappa.hg19.5kb.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1108. chipenrich.data::mappa.hg19.5kb.24mer
    mappa.hg19.5kb.24mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1109. chipenrich.data::mappa.hg19.5kb.36mer
    mappa.hg19.5kb.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1110. chipenrich.data::mappa.hg19.5kb.40mer
    mappa.hg19.5kb.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1111. chipenrich.data::mappa.hg19.5kb.50mer
    mappa.hg19.5kb.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1112. chipenrich.data::mappa.hg19.5kb.75mer
    mappa.hg19.5kb.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1113. chipenrich.data::mappa.hg19.exon.100mer
    mappa.hg19.exon.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19357 x 2
  1114. chipenrich.data::mappa.hg19.exon.24mer
    mappa.hg19.exon.24mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19357 x 2
  1115. chipenrich.data::mappa.hg19.exon.36mer
    mappa.hg19.exon.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19357 x 2
  1116. chipenrich.data::mappa.hg19.exon.40mer
    mappa.hg19.exon.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19357 x 2
  1117. chipenrich.data::mappa.hg19.exon.50mer
    mappa.hg19.exon.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19357 x 2
  1118. chipenrich.data::mappa.hg19.exon.75mer
    mappa.hg19.exon.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19357 x 2
  1119. chipenrich.data::mappa.hg19.intron.100mer
    mappa.hg19.intron.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16829 x 2
  1120. chipenrich.data::mappa.hg19.intron.24mer
    mappa.hg19.intron.24mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16829 x 2
  1121. chipenrich.data::mappa.hg19.intron.36mer
    mappa.hg19.intron.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16829 x 2
  1122. chipenrich.data::mappa.hg19.intron.40mer
    mappa.hg19.intron.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16829 x 2
  1123. chipenrich.data::mappa.hg19.intron.50mer
    mappa.hg19.intron.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16829 x 2
  1124. chipenrich.data::mappa.hg19.intron.75mer
    mappa.hg19.intron.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16829 x 2
  1125. chipenrich.data::mappa.hg19.nearest_gene.100mer
    mappa.hg19.nearest_gene.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18852 x 2
  1126. chipenrich.data::mappa.hg19.nearest_gene.24mer
    mappa.hg19.nearest_gene.24mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18852 x 2
  1127. chipenrich.data::mappa.hg19.nearest_gene.36mer
    mappa.hg19.nearest_gene.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18852 x 2
  1128. chipenrich.data::mappa.hg19.nearest_gene.40mer
    mappa.hg19.nearest_gene.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18852 x 2
  1129. chipenrich.data::mappa.hg19.nearest_gene.50mer
    mappa.hg19.nearest_gene.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18852 x 2
  1130. chipenrich.data::mappa.hg19.nearest_gene.75mer
    mappa.hg19.nearest_gene.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18852 x 2
  1131. chipenrich.data::mappa.hg19.nearest_tss.100mer
    mappa.hg19.nearest_tss.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1132. chipenrich.data::mappa.hg19.nearest_tss.24mer
    mappa.hg19.nearest_tss.24mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1133. chipenrich.data::mappa.hg19.nearest_tss.36mer
    mappa.hg19.nearest_tss.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1134. chipenrich.data::mappa.hg19.nearest_tss.40mer
    mappa.hg19.nearest_tss.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1135. chipenrich.data::mappa.hg19.nearest_tss.50mer
    mappa.hg19.nearest_tss.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1136. chipenrich.data::mappa.hg19.nearest_tss.75mer
    mappa.hg19.nearest_tss.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19051 x 2
  1137. chipenrich.data::mappa.mm9.10kb.100mer
    mappa.mm9.10kb.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1138. chipenrich.data::mappa.mm9.10kb.36mer
    mappa.mm9.10kb.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1139. chipenrich.data::mappa.mm9.10kb.40mer
    mappa.mm9.10kb.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1140. chipenrich.data::mappa.mm9.10kb.50mer
    mappa.mm9.10kb.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1141. chipenrich.data::mappa.mm9.10kb.75mer
    mappa.mm9.10kb.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1142. chipenrich.data::mappa.mm9.1kb.100mer
    mappa.mm9.1kb.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1143. chipenrich.data::mappa.mm9.1kb.36mer
    mappa.mm9.1kb.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1144. chipenrich.data::mappa.mm9.1kb.40mer
    mappa.mm9.1kb.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1145. chipenrich.data::mappa.mm9.1kb.50mer
    mappa.mm9.1kb.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1146. chipenrich.data::mappa.mm9.1kb.75mer
    mappa.mm9.1kb.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1147. chipenrich.data::mappa.mm9.5kb.100mer
    mappa.mm9.5kb.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1148. chipenrich.data::mappa.mm9.5kb.36mer
    mappa.mm9.5kb.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1149. chipenrich.data::mappa.mm9.5kb.40mer
    mappa.mm9.5kb.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1150. chipenrich.data::mappa.mm9.5kb.50mer
    mappa.mm9.5kb.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1151. chipenrich.data::mappa.mm9.5kb.75mer
    mappa.mm9.5kb.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 2
  1152. chipenrich.data::mappa.mm9.exon.100mer
    mappa.mm9.exon.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18801 x 2
  1153. chipenrich.data::mappa.mm9.exon.36mer
    mappa.mm9.exon.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18801 x 2
  1154. chipenrich.data::mappa.mm9.exon.40mer
    mappa.mm9.exon.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18801 x 2
  1155. chipenrich.data::mappa.mm9.exon.50mer
    mappa.mm9.exon.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18801 x 2
  1156. chipenrich.data::mappa.mm9.exon.75mer
    mappa.mm9.exon.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18801 x 2
  1157. chipenrich.data::mappa.mm9.intron.100mer
    mappa.mm9.intron.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15754 x 2
  1158. chipenrich.data::mappa.mm9.intron.36mer
    mappa.mm9.intron.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15754 x 2
  1159. chipenrich.data::mappa.mm9.intron.40mer
    mappa.mm9.intron.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15754 x 2
  1160. chipenrich.data::mappa.mm9.intron.50mer
    mappa.mm9.intron.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15754 x 2
  1161. chipenrich.data::mappa.mm9.intron.75mer
    mappa.mm9.intron.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15754 x 2
  1162. chipenrich.data::mappa.mm9.nearest_gene.100mer
    mappa.mm9.nearest_gene.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18642 x 2
  1163. chipenrich.data::mappa.mm9.nearest_gene.36mer
    mappa.mm9.nearest_gene.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18642 x 2
  1164. chipenrich.data::mappa.mm9.nearest_gene.40mer
    mappa.mm9.nearest_gene.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18642 x 2
  1165. chipenrich.data::mappa.mm9.nearest_gene.50mer
    mappa.mm9.nearest_gene.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18642 x 2
  1166. chipenrich.data::mappa.mm9.nearest_gene.75mer
    mappa.mm9.nearest_gene.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18642 x 2
  1167. chipenrich.data::mappa.mm9.nearest_tss.100mer
    mappa.mm9.nearest_tss.100mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15277 x 2
  1168. chipenrich.data::mappa.mm9.nearest_tss.36mer
    mappa.mm9.nearest_tss.36mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15277 x 2
  1169. chipenrich.data::mappa.mm9.nearest_tss.40mer
    mappa.mm9.nearest_tss.40mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15277 x 2
  1170. chipenrich.data::mappa.mm9.nearest_tss.50mer
    mappa.mm9.nearest_tss.50mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15277 x 2
  1171. chipenrich.data::mappa.mm9.nearest_tss.75mer
    mappa.mm9.nearest_tss.75mer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15277 x 2
  1172. chipenrich.data::mm10
    rda| rds
    GRanges
  1173. chipenrich.data::mm9
    rda| rds
    GRanges
  1174. chipenrich.data::peaks_E2F4
    ChIP-seq Peaks for the E2F4 Transcription Factor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16245 x 3
  1175. chipenrich.data::peaks_H3K4me3_GM12878
    ChIP-seq Peaks for the Histone Modification H3K4me3 in GM12878
    csv| xlsx| json| ndjson| rda| rds
    data.frame|57476 x 3
  1176. chipenrich.data::spline.log_dtss.90ENCODE
    DTSS Spline adjustment
    rda| rds
    gam
  1177. chipenrich.data::tss.danRer10
    tss.danRer10 TSS locations
    rda| rds
    GRanges
  1178. chipenrich.data::tss.dm3
    tss.dm3 TSS locations
    rda| rds
    GRanges
  1179. chipenrich.data::tss.dm6
    tss.dm6 TSS locations
    rda| rds
    GRanges
  1180. chipenrich.data::tss.hg19
    tss.hg19 TSS locations
    rda| rds
    GRanges
  1181. chipenrich.data::tss.hg38
    tss.hg38 TSS locations
    rda| rds
    GRanges
  1182. chipenrich.data::tss.mm10
    tss.mm10 TSS locations
    rda| rds
    GRanges
  1183. chipenrich.data::tss.mm9
    tss.mm9 TSS locations
    rda| rds
    GRanges
  1184. chipenrich.data::tss.rn4
    tss.rn4 TSS locations
    rda| rds
    GRanges
  1185. chipenrich.data::tss.rn5
    tss.rn5 TSS locations
    rda| rds
    GRanges
  1186. chipenrich.data::tss.rn6
    tss.rn6 TSS locations
    rda| rds
    GRanges
  1187. ChIPexoQual::blacklists
    'list' of 'GRanges' objects with the blacklists generated by the ENCODE and modENCODE projects.
    rda| rds
    list
  1188. ChIPexoQual::exoExample
    'ExoData' results for FoxA1 ChIP-exo experiment
    rda| rds
    ExoData
  1189. ChIPpeakAnno::annotatedPeak
    Annotated Peaks
    rda| rds
    GRanges
  1190. ChIPpeakAnno::enrichedGO
    Enriched Gene Ontology terms used as example
    json| rda| rds
    list
  1191. ChIPpeakAnno::ExonPlusUtr.human.GRCh37
    Gene model with exon, 5' UTR and 3' UTR information for human sapiens (GRCh37) obtained from biomaRt
    rda| rds
    GRanges
  1192. ChIPpeakAnno::HOT.spots
    High Occupancy of Transcription Related Factors regions
    rda| rds
    CompressedGRangesList
  1193. ChIPpeakAnno::myPeakList
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  1194. ChIPpeakAnno::Peaks.Ste12.Replicate1
    Ste12-binding sites from biological replicate 1 in yeast (see reference)
    rda| rds
    GRanges
  1195. ChIPpeakAnno::Peaks.Ste12.Replicate2
    Ste12-binding sites from biological replicate 2 in yeast (see reference)
    rda| rds
    GRanges
  1196. ChIPpeakAnno::Peaks.Ste12.Replicate3
    Ste12-binding sites from biological replicate 3 in yeast (see reference)
    rda| rds
    GRanges
  1197. ChIPpeakAnno::peaks1
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  1198. ChIPpeakAnno::peaks2
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  1199. ChIPpeakAnno::peaks3
    An example GRanges object representing a ChIP-seq peak dataset
    rda| rds
    GRanges
  1200. ChIPpeakAnno::TSS.human.GRCh37
    TSS annotation for human sapiens (GRCh37) obtained from biomaRt
    rda| rds
    GRanges
  1201. ChIPpeakAnno::TSS.human.GRCh38
    TSS annotation for human sapiens (GRCh38) obtained from biomaRt
    rda| rds
    GRanges
  1202. ChIPpeakAnno::TSS.human.NCBI36
    TSS annotation for human sapiens (NCBI36) obtained from biomaRt
    rda| rds
    GRanges
  1203. ChIPpeakAnno::TSS.mouse.GRCm38
    TSS annotation data for Mus musculus (GRCm38.p1) obtained from biomaRt
    rda| rds
    GRanges
  1204. ChIPpeakAnno::TSS.mouse.NCBIM37
    TSS annotation data for mouse (NCBIM37) obtained from biomaRt
    rda| rds
    GRanges
  1205. ChIPpeakAnno::TSS.rat.RGSC3.4
    TSS annotation data for rat (RGSC3.4) obtained from biomaRt
    rda| rds
    GRanges
  1206. ChIPpeakAnno::TSS.rat.Rnor_5.0
    TSS annotation data for Rattus norvegicus (Rnor_5.0) obtained from biomaRt
    rda| rds
    GRanges
  1207. ChIPpeakAnno::TSS.zebrafish.Zv8
    TSS annotation data for zebrafish (Zv8) obtained from biomaRt
    rda| rds
    GRanges
  1208. ChIPpeakAnno::TSS.zebrafish.Zv9
    TSS annotation for Danio rerio (Zv9) obtained from biomaRt
    rda| rds
    GRanges
  1209. ChIPpeakAnno::wgEncodeTfbsV3
    transcription factor binding site clusters (V3) from ENCODE
    rda| rds
    GRanges
  1210. ChIPQC::exampleExp
    Example data sets for 'ChIPQC' package, each containing a 'ChIPQCexperiment' object, as well as a pre-compiled blacklist for hg19.
    csv| json| rda| rds
    ChIPQCexperiment
  1211. ChIPQC::tamoxifen
    Example data sets for 'ChIPQC' package, each containing a 'ChIPQCexperiment' object, as well as a pre-compiled blacklist for hg19.
    csv| json| rda| rds
    ChIPQCexperiment
  1212. ChIPseeker::gsminfo
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|103398 x 14
  1213. ChIPseeker::tagMatrixList
    Information Datasets
    json| rda| rds
    list
  1214. ChIPseeker::ucsc_release
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|112 x 4
  1215. chipseq::cstest
    A test ChIP-Seq dataset
    rda| rds
    CompressedGRangesList
  1216. ChIPXpress::Oct4ESC_ChIPgenes
    Predicted Oct4 bound genes in embryonic stem cells (ESC) obtained from analyzing ChIP-seq data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5158 x 21
  1217. chopsticks::Asnps
    Test data for the snpMatrix package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9445 x 2
  1218. chopsticks::Autosomes
    Test data for the snpMatrix package
    rda| rds
    snp.matrix|400 x 9445
  1219. chopsticks::snp.support
    Data for exercise in use of the snpMatrix package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28501 x 4
  1220. chopsticks::snps.10
    Data for exercise in use of the snpMatrix package
    rda| rds
    snp.matrix|1000 x 28501
  1221. chopsticks::subject.data
    Test data for the snpMatrix package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|400 x 4
  1222. chopsticks::subject.support
    Data for exercise in use of the snpMatrix package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 2
  1223. chopsticks::Xchromosome
    Test data for the snpMatrix package
    rda| rds
    X.snp.matrix|400 x 155
  1224. chopsticks::Xsnps
    Test data for the snpMatrix package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|155 x 1
  1225. ChromHeatMap::ALLs.chr22
    Chromosome 22 subset of ALL data for ALL1/AF4 and E2A/PBX1
    rda| rds
    ExpressionSet
  1226. ChromHeatMap::chrdata
    The ALLs.chr22 ExpressionSet, reformatted as a ChrStrandData object
    rda| rds
    ChrStrandData
  1227. ChromHeatMap::cytobands
    Cytoband location information
    json| rda| rds
    list
  1228. ChromHeatMap::stains
    Cytoband display information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 5
  1229. chromPlot::hg_cytoBandIdeo
    cytoBandIdeo human
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  1230. chromPlot::hg_gap
    Human Gap
    csv| xlsx| json| ndjson| rda| rds
    data.frame|457 x 4
  1231. chromPlot::mm10_cytoBandIdeo
    cytoBandIdeo
    csv| xlsx| json| ndjson| rda| rds
    data.frame|448 x 5
  1232. chromPlot::mm10_gap
    Gaps
    csv| xlsx| json| ndjson| rda| rds
    data.frame|686 x 4
  1233. ChromSCape::ce11.chromosomes
    Data.frame of chromosome length - ce11
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 3
  1234. ChromSCape::ce11.GeneTSS
    Data.frame of gene TSS - ce11
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20051 x 5
  1235. ChromSCape::CheA3_TF_nTargets
    A data.frame with the number of targets of each TF in ChEA3
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1632 x 2
  1236. ChromSCape::hg38.chromosomes
    Data.frame of chromosome length - hg38
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  1237. ChromSCape::hg38.cytoBand
    Data.frame of cytoBandlocation - hg38
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 4
  1238. ChromSCape::hg38.GeneTSS
    Data.frame of gene TSS - hg38
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32937 x 5
  1239. ChromSCape::mm10.chromosomes
    Data.frame of chromosome length - mm10
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 3
  1240. ChromSCape::mm10.cytoBand
    Data.frame of cytoBandlocation - mm10
    csv| xlsx| json| ndjson| rda| rds
    data.frame|403 x 4
  1241. ChromSCape::mm10.GeneTSS
    Data.frame of gene TSS - mm10
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27916 x 5
  1242. ChromSCape::scExp
    A SingleCellExperiment outputed by ChromSCape
    rda| rds
    SingleCellExperiment
  1243. chromVAR::example_counts
    example_counts
    rda| rds
    RangedSummarizedExperiment
  1244. chromVAR::mini_counts
    mini_counts
    rda| rds
    RangedSummarizedExperiment
  1245. chromVAR::mini_dev
    mini_dev
    rda| rds
    chromVARDeviations
  1246. chromVAR::mini_ix
    mini_ix
    rda| rds
    RangedSummarizedExperiment
  1247. cicero::cell_data
    Metadata for example cells in cicero_data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 2
  1248. cicero::cicero_data
    Example single-cell chromatin accessibility data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35137 x 3
  1249. cicero::gene_annotation_sample
    Example gene annotation information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15129 x 8
  1250. cicero::human.hg19.genome
    Chromosome lengths from human genome hg19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|93 x 2
  1251. circRNAprofiler::ahChainFiles
    ahChainFile
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1113 x 2
  1252. circRNAprofiler::ahRepeatMasker
    ahRepeatMasker
    csv| xlsx| json| ndjson| rda| rds
    data.frame|84 x 3
  1253. circRNAprofiler::attractSpecies
    attractSpecies
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37 x 1
  1254. circRNAprofiler::backSplicedJunctions
    backSplicedJunctions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|63521 x 16
  1255. circRNAprofiler::gtf
    gtf
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4401 x 9
  1256. circRNAprofiler::gwasTraits
    gwasTraits
    csv| xlsx| json| ndjson| rda| rds
    data.frame|653 x 1
  1257. circRNAprofiler::iupac
    iupac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 4
  1258. circRNAprofiler::memeDB
    memeDB
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 2
  1259. circRNAprofiler::mergedBSJunctions
    mergedBSJunctions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41558 x 16
  1260. circRNAprofiler::miRspeciesCodes
    miRspeciesCodes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|271 x 2
  1261. CiteFuse::CITEseq_example
    A subset of ECCITE-seq data (control)
    rda| rds
    list
  1262. CiteFuse::lr_pair_subset
    A subset of Ligand Receptor Pairs
    csv| json| rda| rds
    matrix|50 x 0
  1263. CiteFuse::sce_control_subset
    A SingleCellExperiment of ECCITE-seq data
    rda| rds
    SingleCellExperiment
  1264. CiteFuse::sce_ctcl_subset
    A SingleCellExperiment of ECCITE-seq data
    rda| rds
    SingleCellExperiment
  1265. CLAMP::celltypeTargets
    Cell-type deconvolution matrix
    csv| json| rda| rds
    matrix|36 x 8
  1266. CLAMP::dataWholeBlood
    Whole-blood reference expression matrix
    csv| json| rda| rds
    matrix|11530 x 36
  1267. CLAMP::majorCellTypes
    Major cell-type annotations
    csv| json| rda| rds
    matrix|35 x 8
  1268. CLAMP::panDB
    panDB gene-set database
    rda| rds
    dgCMatrix
  1269. CLAMP::xCell
    xCell cell-signature matrix
    rda| rds
    dgCMatrix
  1270. ClassifyR::classes
    Asthma RNA Abundance and Patient Classes
    json| rda| rds
    factor
  1271. ClassifyR::clinical
    METABRIC Clinical Data
    rda| rds
    DFrame
  1272. ClassifyR::interactors
    Human Reference Interactome
    rda| rds
    Pairs
  1273. ClassifyR::measurements
    Asthma RNA Abundance and Patient Classes
    csv| json| rda| rds
    matrix|190 x 0
  1274. cleanUpdTSeq::classifier
    NaiveBayes classifier
    rda| rds
    PASclassifier
  1275. cleanUpdTSeq::data.NaiveBayes
    Training Data
    json| rda| rds
    list
  1276. CleanUpRNAseq::feature_counts_list
    GC content and lengths of 2000 intergenic regions
    json| rda| rds
    list
  1277. CleanUpRNAseq::gene_GC
    GC content and lengths of 2000 human genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|62754 x 2
  1278. CleanUpRNAseq::intergenic_GC
    GC content and lengths of 2000 intergenic regions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 2
  1279. CleanUpRNAseq::salmon_quant
    GC content and lengths of 2000 intergenic regions
    csv| json| rda| rds
    list
  1280. clippda::liver_pheno
    A dataframe of phenotypic information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|131 x 3
  1281. clippda::liverdata
    A dataframe of the protein expression data, peak information, and sample information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13886 x 6
  1282. clippda::liverRawData
    A dataframe of the protein expression data, peak information and sample information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14098 x 6
  1283. clippda::pheno_urine
    A dataframe of phenotypic information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|167 x 6
  1284. cliqueMS::ex.cliqueGroups
    Example m/z processed data
    rda| rds
    anClique
  1285. cliqueMS::negative.adinfo
    Default list of negative charged adducts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 5
  1286. cliqueMS::positive.adinfo
    Default list of positive charged adducts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39 x 5
  1287. CLL::CLLbatch
    The AffyBatch object for the CLL microarray data
    rda| rds
    AffyBatch
  1288. CLL::disease
    The phenotype data for the CLL microarray data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 2
  1289. CLL::nsFilter
    Nonspecific filtering boolean values for the sCLLex ExpressionSet object
    json| rda| rds
    logical
  1290. CLL::sCLLex
    The ExpressionSet object for the CLL microarray data
    rda| rds
    ExpressionSet
  1291. CLL::sFiltert
    Boolean values for specific filtering based on the t-test
    json| rda| rds
    logical
  1292. CLL::sFiltertBH
    Boolean values for specific filtering based on the t-test
    json| rda| rds
    logical
  1293. Clomial::breastCancer
    Breast cancer data for clonal decomposition.
    csv| json| rda| rds
    list
  1294. Clomial::Clomial1000
    Pre-computed results of Clomial.
    rda| rds
    list
  1295. clst::actino
    Actinomyces data set
    json| rda| rds
    list
  1296. clst::bvseqs
    BV reference set.
    json| rda| rds
    list
  1297. clst::strep
    Streptococcus data set.
    json| rda| rds
    list
  1298. clstutils::seqdat
    Annotation for the Enterococcus sequence data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 5
  1299. clstutils::seqs
    Enterococcus sequence data set.
    rda| rds
    DNAbin|200 x 0
  1300. ClustAll::heart_data
    Heart Disease Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|918 x 12
  1301. ClustAll::obj_noNA1
    obj_noNA1: Processed wdbc dataset for testing purposed
    rda| rds
    ClustAllObject
  1302. ClustAll::obj_noNA1simplify
    obj_noNA1simplify: Processed wdbc dataset for testing purposed
    rda| rds
    ClustAllObject
  1303. ClustAll::obj_noNAno1Validation
    obj_noNAno1Validation: Processed wdbc dataset for testing purposed
    rda| rds
    ClustAllObject
  1304. ClustAll::wdbc
    wdbc: Diagnostic Wisconsin Breast Cancer Database.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|569 x 32
  1305. ClustAll::wdbcMIDS
    wdbcMIDS: Diagnostic Wisconsin Breast Cancer Database with imputed values
    rda| rds
    mids
  1306. ClustAll::wdbcNA
    wdbcNA: Diagnostic Wisconsin Breast Cancer Database with missing values
    csv| xlsx| json| ndjson| rda| rds
    data.frame|569 x 31
  1307. clusterExperiment::fluidigmColData
    Subset of fluidigm data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|65 x 28
  1308. clusterExperiment::fluidigmData
    Subset of fluidigm data
    rda| rds
    SimpleList
  1309. clusterExperiment::rsecFluidigm
    Documentation of rsecFluidigm object
    rda| rds
    ClusterExperiment
  1310. clusterExperiment::simCount
    Simulated data for running examples
    csv| json| rda| rds
    matrix|153 x 0
  1311. clusterExperiment::simData
    Simulated data for running examples
    csv| json| rda| rds
    matrix|153 x 0
  1312. clusterExperiment::trueCluster
    Simulated data for running examples
    json| rda| rds
    integer
  1313. ClusterGVis::BEAM_res
    This is a test data for this package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47192 x 8
  1314. ClusterGVis::exps
    This is a test data for this package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3767 x 6
  1315. ClusterGVis::HSMM
    This is a test data for this package
    rda| rds
    CellDataSet
  1316. ClusterGVis::net
    This is a test data for this package
    rda| rds
    list
  1317. ClusterGVis::pbmc_subset
    This is a test data for this package
    rda| rds
    Seurat
  1318. ClusterGVis::sig_gene_names
    This is a test data for this package
    json| rda| rds
    character
  1319. ClusterGVis::termanno
    This is a test data for this package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 2
  1320. ClusterGVis::termanno2
    This is a test data for this package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  1321. ClusterJudge::mi.GO.Yeast
    precalculated mutual information between Gene Ontology attributes of Yeast genes
    csv| json| rda| rds
    matrix|2266 x 0
  1322. ClusterJudge::Yeast.GO.assocs
    Gene Ontology attributes associated to Yeast Gene entities
    csv| xlsx| json| ndjson| rda| rds
    data.frame|70487 x 2
  1323. clusterProfiler::DE_GSE8057
    Datasets gcSample contains a sample of gene clusters.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1251 x 3
  1324. clusterProfiler::gcSample
    Datasets gcSample contains a sample of gene clusters.
    json| rda| rds
    list
  1325. clusterSeq::cD.ratThymus
    Data from female rat thymus tissue taken from the Rat BodyMap project (Yu et al, 2014) and processed by baySeq.
    rda| rds
    countData
  1326. clusterSeq::ratThymus
    Data from female rat thymus tissue taken from the Rat BodyMap project (Yu et al, 2014).
    csv| json| rda| rds
    matrix|17230 x 16
  1327. ClusterSignificance::mlpMatrix
    Simulated data used to demonstrate the Mlp method.
    csv| json| rda| rds
    matrix|40 x 2
  1328. ClusterSignificance::pcpMatrix
    Simulated data used to demonstrate the Pcp method.
    csv| json| rda| rds
    matrix|60 x 3
  1329. clustifyr::cbmc_m
    reference marker matrix from seurat citeseq CBMC tutorial
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 13
  1330. clustifyr::cbmc_ref
    reference matrix from seurat citeseq CBMC tutorial
    csv| json| rda| rds
    matrix|2000 x 13
  1331. clustifyr::downrefs
    table of references stored in clustifyrdata
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|9 x 6
  1332. clustifyr::human_genes_10x
    Vector of human genes for 10x cellranger pipeline
    json| rda| rds
    character
  1333. clustifyr::mouse_genes_10x
    Vector of mouse genes for 10x cellranger pipeline
    json| rda| rds
    character
  1334. clustifyr::object_loc_lookup
    lookup table for single cell object structures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 6
  1335. clustifyr::pbmc_markers
    Marker genes identified by Seurat from single-cell RNA-seq PBMCs.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2304 x 7
  1336. clustifyr::pbmc_markers_M3Drop
    Marker genes identified by M3Drop from single-cell RNA-seq PBMCs.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|162 x 3
  1337. clustifyr::pbmc_matrix_small
    Matrix of single-cell RNA-seq PBMCs.
    rda| rds
    dgCMatrix
  1338. clustifyr::pbmc_meta
    Meta-data for single-cell RNA-seq PBMCs.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2638 x 9
  1339. clustifyr::pbmc_vargenes
    Variable genes identified by Seurat from single-cell RNA-seq PBMCs.
    json| rda| rds
    character
  1340. ClustIRR::BLOSUM62
    BLOSUM62 matrix
    csv| json| rda| rds
    matrix|25 x 25
  1341. ClustIRR::D_CMV_FLU
    Processed single-cell TCR and gene expression dataset of antigen stimulated T cells
    json| rda| rds
    list
  1342. ClustIRR::D1
    Synthetic dataset 'D1' with three TCRalphabeta repertoires
    json| rda| rds
    list
  1343. ClustIRR::D2
    Synthetic dataset 'D2' with six TCRalphabeta repertoires
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2773 x 4
  1344. ClustIRR::mcpas
    CDR3 sequences and their matching epitopes obtained from McPAS-TCR
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35287 x 10
  1345. ClustIRR::tcr3d
    CDR3 sequences and their matching epitopes obtained from TCR3d
    csv| xlsx| json| ndjson| rda| rds
    data.frame|273 x 10
  1346. ClustIRR::vdjdb
    CDR3 sequences and their matching epitopes obtained from VDJdb
    csv| xlsx| json| ndjson| rda| rds
    data.frame|81894 x 10
  1347. clustSIGNAL::me_data
    Mouse Embryo Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5000 x 6
  1348. clustSIGNAL::me_expr
    Mouse Embryo Data
    rda| rds
    dgCMatrix
  1349. clustSIGNAL::mh_data
    Mouse Hypothalamus Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6000 x 6
  1350. clustSIGNAL::mh_expr
    Mouse Hypothalamus Data
    rda| rds
    dgCMatrix
  1351. clustSIGNAL::nnCells
    Example data with SpatialExperiment object
    csv| json| rda| rds
    matrix|500 x 0
  1352. clustSIGNAL::regXclust
    Example data with SpatialExperiment object
    csv| json| rda| rds
    matrix|500 x 6
  1353. clustSIGNAL::spe
    Example data with SpatialExperiment object
    rda| rds
    SpatialExperiment
  1354. CMA::golub
    ALL/AML dataset of Golub et al. (1999)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38 x 0
  1355. CMA::khan
    Small blue round cell tumor dataset of Khan et al. (2001)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|63 x 0
  1356. cMap2data::cytodrug
    Cytodrug data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1306 x 4
  1357. cMap2data::drugClusters
    Drug Clusters Matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1309 x 2
  1358. cMap2data::druglabels
    Drug name maps to Drug Bank
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1309 x 2
  1359. cMap2data::drugRL
    Drug Ranked List Matrix
    csv| json| rda| rds
    matrix|11863 x 0
  1360. cMap2data::genelist
    Gene List Vector
    json| rda| rds
    character
  1361. cmapR::cdesc_char
    An example table of metadata, as would be parsed from or parse.gctx. Initially all the columns are of type character.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|368 x 8
  1362. cmapR::ds
    An example of a GCT object with row and column metadata and gene expression values in the matrix.
    rda| rds
    GCT
  1363. cmapR::gene_set
    An example collection of gene sets as used in the Lamb 2006 CMap paper.
    csv| json| rda| rds
    list
  1364. cmapR::kd_gct
    An example GCT object of knockdown experiments targeting a subset of landmark genes.
    rda| rds
    GCT
  1365. cn.mops::CNVRanges
    Genomic locations and indices of the simulated CNVs.
    rda| rds
    GRanges
  1366. cn.mops::exomeCounts
    Read counts from exome sequencing for CNV detection
    rda| rds
    GRanges
  1367. cn.mops::X
    A simulated data set for CNV detection from NGS data.
    csv| json| rda| rds
    matrix|5000 x 40
  1368. cn.mops::XRanges
    A simulated data set for CNV detection from NGS data.
    rda| rds
    GRanges
  1369. CNAnorm::CN
    A CNAnorm object with information about most abundant ploidy states, obtained from data LS041.
    rda| rds
    CNAnorm
  1370. CNAnorm::gPar
    An object with the default graphical parameters
    json| rda| rds
    list
  1371. CNAnorm::hg19_hs_ideogr
    An object with the ideogram information for homo sapiens - hg19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  1372. CNAnorm::LS041
    Mapped reads in tumor and matched blood for patient LS041
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7262 x 5
  1373. CNEr::axisTrack
    Example data for plotting annotation.
    rda| rds
    GenomeAxisTrack
  1374. CNEr::CNEDanRer10Hg38
    CNEHg38DanRer10 and CNEDanRer10Hg38 dataset
    rda| rds
    list
  1375. CNEr::cneFinalListDanRer10Hg38
    cneFinalListDanRer10Hg38 dataset
    rda| rds
    list
  1376. CNEr::CNEHg38DanRer10
    CNEHg38DanRer10 and CNEDanRer10Hg38 dataset
    rda| rds
    list
  1377. CNEr::cpgIslands
    Example data for plotting annotation.
    rda| rds
    AnnotationTrack
  1378. CNEr::grangesPairsForDotplot
    grangesPairsForDotplot
    rda| rds
    GRangePairs
  1379. CNEr::refGenes
    Example data for plotting annotation.
    rda| rds
    GeneRegionTrack
  1380. CNORdt::CNOlistPB
    Toy data
    json| rda| rds
    list
  1381. CNORdt::modelPB
    modelPB
    json| rda| rds
    list
  1382. CNORfeeder::cnolist
    CNOlist
    rda| rds
    CNOlist
  1383. CNORfeeder::CNOlistToy_Gene
    rda| rds
    CNOlist
  1384. CNORfeeder::database
    OmniPath PPI
    csv| json| rda| rds
    matrix|12336 x 0
  1385. CNORfeeder::feederObject
    Feeder Object
    json| rda| rds
    list
  1386. CNORfeeder::indices
    Mis-fit indices
    json| rda| rds
    list
  1387. CNORfeeder::integratedModel
    Integrated Model
    json| rda| rds
    list
  1388. CNORfeeder::model
    Prior Knowledge Network
    json| rda| rds
    list
  1389. CNORfeeder::model
    Prior Knowledge Network
    json| rda| rds
    list
  1390. CNORfeeder::PPINigraph
    Protein-protein interaction netwrok
    rda| rds
    igraph
  1391. CNORfeeder::simData
    CNORode simuation data
    csv| json| rda| rds
    list
  1392. CNORfeeder::UniprotIDdream
    Uniprot identifiers for proteins in DreamModel
    json| rda| rds
    list
  1393. CNORode::cnodata
    A cnodata from CellNoptR
    rda| rds
    CNOlist
  1394. CNORode::cnolist
    A cnolist from CellNoptR
    rda| rds
    CNOlist
  1395. CNORode::cnolistCNORodeExample
    A cnolist from CellNoptR
    json| rda| rds
    list
  1396. CNORode::indices
    Indices that relate cnolist to model
    json| rda| rds
    list
  1397. CNORode::model
    A model from CellNoptR
    json| rda| rds
    list
  1398. CNORode::pknmodel
    A pknmodel from CellNoptR
    json| rda| rds
    list
  1399. CNORode::pknmodel
    A pknmodel from CellNoptR
    json| rda| rds
    list
  1400. CNTools::geneInfo
    method that convert segment data into reduced segment matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28918 x 5
  1401. CNTools::sampleData
    Class "CNSeg" contains the output of DNACopy segmentation data that can be operated on by the associated methods
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54825 x 6
  1402. cnvGSAdata::cnvGSA.in
    cnvGSA example input
    rda| rds
    CnvGSAInput
  1403. cnvGSAdata::cnvGSA.out
    cnvGSA example output
    rda| rds
    CnvGSAOutput
  1404. CNViz::gene_data
    Gene data for vignette example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 7
  1405. CNViz::meta_data
    Metadata for vignette example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 2
  1406. CNViz::probe_data
    Probe data for vignette example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 6
  1407. CNViz::segment_data
    Segment data for vignette example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 5
  1408. CNViz::variant_data
    Variant data for vignette example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 4
  1409. CNVPanelizer::referenceReadCounts
    Reference sample data
    csv| json| rda| rds
    matrix|110 x 100
  1410. CNVPanelizer::sampleReadCounts
    Test sample data
    csv| json| rda| rds
    matrix|110 x 4
  1411. CNVrd2::ccl3l1data
    Data of CCL3L1 gene (The 1000 Genomes Project)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1917 x 4
  1412. CNVrd2::copynumberGroups
    MXL population data (The 1000 Genomes Project)
    json| rda| rds
    list
  1413. CNVrd2::objectCNVrd2
    MXL population data (The 1000 Genomes Project)
    rda| rds
    CNVrd2
  1414. CNVrd2::resultSegment
    MXL population data (The 1000 Genomes Project)
    json| rda| rds
    list
  1415. COCOA::atf3_chr1
    Atf3 binding regions.
    rda| rds
    GRanges
  1416. COCOA::brcaATACCoord1
    A GRanges object with coordinates for select BRCA ATAC-seq peak regions from chr1.
    rda| rds
    GRanges
  1417. COCOA::brcaATACData1
    A matrix with ATAC-seq counts in select peak regions from chromosome 1 for 37 patients.
    csv| json| rda| rds
    matrix|4053 x 37
  1418. COCOA::brcaMCoord1
    A GRanges object with genomic coordinates for cytosines from chr1 for the package's built-in DNA methylation data
    rda| rds
    GRanges
  1419. COCOA::brcaMetadata
    A data.frame with patient metadata for breast cancer patients.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|329 x 6
  1420. COCOA::brcaMethylData1
    A matrix with DNA methylation levels from some CpGs on chromosome 1
    csv| json| rda| rds
    matrix|6004 x 300
  1421. COCOA::brcaPCScores
    A matrix with principal component scores for PCs 1-4 for four breast cancer patients.
    csv| json| rda| rds
    matrix|4 x 4
  1422. COCOA::brcaPCScores657
    A data.frame with principal component scores for PCs 1-4 for 657 breast cancer patients as well as a column with estrogen receptor status.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|657 x 5
  1423. COCOA::esr1_chr1
    Estrogen receptor alpha binding regions.
    rda| rds
    GRanges
  1424. COCOA::gata3_chr1
    Gata3 binding regions.
    rda| rds
    GRanges
  1425. COCOA::nrf1_chr1
    Nrf1 binding regions.
    rda| rds
    GRanges
  1426. COCOA::rsScores
    Example COCOA Results (made up)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 3
  1427. codelink::codelink.example
    Dataset of class 'Codelink'
    json| rda| rds
    Codelink
  1428. codelink::codset
    Dataset of class 'CodelinkSet'
    rda| rds
    CodelinkSet
  1429. CODEX::bambedObjDemo
    Demo data pre-stored for bambedObj.
    rda| rds
    list
  1430. CODEX::coverageObjDemo
    Demo data pre-stored for coverageObj.
    json| rda| rds
    list
  1431. CODEX::gcDemo
    Demo data pre-stored for GC content.
    json| rda| rds
    numeric
  1432. CODEX::mapp_ref
    Position reference for pre-computed mappability results.
    rda| rds
    list
  1433. CODEX::mappability
    Pre-computed mappabilities
    json| rda| rds
    list
  1434. CODEX::mappDemo
    Demo data pre-stored for mappability.
    json| rda| rds
    numeric
  1435. CODEX::normObjDemo
    Demo data pre-stored for normObj.
    csv| json| rda| rds
    list
  1436. CODEX::qcObjDemo
    Demo data pre-stored for qcObj.
    rda| rds
    list
  1437. CoGAPS::GIST.data_frame
    GIST gene expression data from Ochs et al. (2009)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1363 x 9
  1438. CoGAPS::GIST.matrix
    GIST gene expression data from Ochs et al. (2009)
    csv| json| rda| rds
    matrix|1363 x 9
  1439. CoGAPS::GIST.result
    CoGAPS result from running on GIST dataset
    rda| rds
    CogapsResult
  1440. CoGAPS::GIST.uncertainty
    GIST gene expression uncertainty matrix from Ochs et al. (2009)
    csv| json| rda| rds
    matrix|1363 x 9
  1441. CoGAPS::modsimdata
    Toy example to run CoGAPS on.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 20
  1442. CoGAPS::modsimresult
    Result of applying CoGAPS on the Toy example.
    rda| rds
    CogapsResult
  1443. cogena::AllGeneSymbols
    All the gene symbols
    json| rda| rds
    character
  1444. cogena::DEexprs
    gene expression of DEG
    csv| json| rda| rds
    matrix|706 x 116
  1445. cogena::sampleLabel
    label of samples
    json| rda| rds
    factor
  1446. cogeqc::batch_summary
    BUSCO summary output for batch mode
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 4
  1447. cogeqc::interpro_ath
    Intepro annotation for Arabidopsis thaliana's genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|131661 x 2
  1448. cogeqc::interpro_bol
    Intepro annotation for Brassica oleraceae's genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|212665 x 2
  1449. cogeqc::og
    Orthogroups between Arabidopsis thaliana and Brassica oleraceae
    csv| xlsx| json| ndjson| rda| rds
    data.frame|88934 x 3
  1450. cogeqc::og_overlap_model
    Number of shared orthogroups between model organisms
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15 x 3
  1451. cogeqc::synnet
    Synteny network for Brassica oleraceae, B. napus, and B. rapa
    csv| xlsx| json| ndjson| rda| rds
    data.frame|436508 x 2
  1452. cogeqc::tree
    Species tree for model species
    rda| rds
    phylo
  1453. Cogito::MurEpi.ChIP.small
    Example data set: Murine ChIP-seq data of GEO GSE77004
    rda| rds
    CompressedGRangesList
  1454. Cogito::MurEpi.RNA.small
    Example data set: Murine RNA-seq RPKM values of GSE77004
    rda| rds
    GRanges
  1455. Cogito::MurEpi.RRBS.small
    Example data set: Murine methylation status data set of GSE77004
    rda| rds
    GRanges
  1456. coGPS::CNV_classlab_matched
    Sample Data for coGPS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|69 x 1
  1457. coGPS::CNV_exprs_matched
    Sample Data for coGPS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 69
  1458. coGPS::Exon_classlab_matched
    Sample Data for coGPS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|69 x 1
  1459. coGPS::Exon_exprs_matched
    Sample Data for coGPS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 69
  1460. coGPS::Hs.gmtl.c1
    Sample Data for coGPS
    json| rda| rds
    list
  1461. coGPS::Methy_classlab_matched
    Sample Data for coGPS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|69 x 1
  1462. coGPS::Methy_exprs_matched
    Sample Data for coGPS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 69
  1463. COHCAPanno::COHCAP.27k
    Annotation for UCSC CpG Islands for 27k Illumina Human Methylation Array
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27578 x 5
  1464. COHCAPanno::COHCAP.450k.HMM
    Annotation for HMM CpG Islands for 450k Illumina Human Methylation Array
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485512 x 5
  1465. COHCAPanno::COHCAP.450k.UCSC
    Annotation for UCSC CpG Islands for 450k Illumina Human Methylation Array
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485512 x 5
  1466. cola::cola_rl
    Example ConsensusPartitionList object
    rda| rds
    ConsensusPartitionList
  1467. cola::golub_cola
    Example ConsensusPartitionList object from Golub dataset
    rda| rds
    ConsensusPartitionList
  1468. cola::golub_cola_ds
    Example DownSamplingConsensusPartition object from Golub dataset
    rda| rds
    DownSamplingConsensusPartition
  1469. cola::golub_cola_rh
    Example HierarchicalPartition object from Golub dataset
    rda| rds
    HierarchicalPartition
  1470. colonCA::colonCA
    Data from the microarray experiment done by Alon et al. (1999)
    rda| rds
    ExpressionSet
  1471. comapr::coCount
    RangedSummarizedExperiment object containing the crossover counts across samples for the list of SNP marker intervals
    rda| rds
    RangedSummarizedExperiment
  1472. comapr::parents_geno
    Parents' genotype for F1 samples in 'snp_geno'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33 x 2
  1473. comapr::snp_geno
    Markers by genotype results for a group of samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33 x 27
  1474. comapr::snp_geno_gr
    Markers by genotype results for a group of samples
    rda| rds
    GRanges
  1475. comapr::twoSamples
    RangedSummarizedExperiment object containing the Viterbi states SNP markers for samples from two groups. 'colData(twoSamples)' contains the sample group factor.
    rda| rds
    RangedSummarizedExperiment
  1476. combi::zhangMetabo
    Metabolomes of mice that underwent Pulsed Antibiotic Treatment (PAT) and controls
    rda| rds
    SummarizedExperiment
  1477. combi::zhangMetavars
    Baseline sample variables of PAT and control mice
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42 x 4
  1478. combi::zhangMicrobio
    Microbiomes of mice that underwent Pulsed Antibiotic Treatment (PAT) and controls
    rda| rds
    phyloseq
  1479. coMethDMR::betaMatrix_ex1
    Alzheimer's Prefrontal Cortex (PFC) Methylation Data
    csv| json| rda| rds
    matrix|110 x 4
  1480. coMethDMR::betaMatrix_ex2
    Alzheimer's Prefrontal Cortex (PFC) Methylation Data
    csv| json| rda| rds
    matrix|110 x 4
  1481. coMethDMR::betaMatrix_ex3
    Alzheimer's Prefrontal Cortex (PFC) Methylation Data
    csv| json| rda| rds
    matrix|110 x 6
  1482. coMethDMR::betaMatrix_ex4
    Alzheimer's Prefrontal Cortex (PFC) Methylation Data
    csv| json| rda| rds
    matrix|110 x 52
  1483. coMethDMR::betasChr22_df
    Prefrontal Cortex (PFC) Methylation Data from Alzheimer's Disease subjects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8552 x 20
  1484. coMethDMR::pheno_df
    Example phenotype data file from Prefrontal Cortex (PFC) Methylation Data of Alzheimer's Disease subjects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|114 x 6
  1485. compSPOT::compSPOT_example_mutations
    Single Nucleotide Variants and Patient Features in Lung Cancer Patients
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21225 x 11
  1486. compSPOT::compSPOT_example_regions
    Genomic Coordinates of Regions of Interest
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 4
  1487. condiments::toy_dataset
    A toy dataset used in the vignette and in the examples
    json| rda| rds
    list
  1488. CONFESS::clu
    clu
    json| rda| rds
    list
  1489. CONFESS::estimates
    estimates
    json| rda| rds
    list
  1490. CONFESS::estimates.2
    estimates.2
    json| rda| rds
    list
  1491. CONFESS::files
    files
    json| rda| rds
    list
  1492. CONFESS::Results
    Results
    json| rda| rds
    list
  1493. CONFESS::step1
    step1
    json| rda| rds
    list
  1494. CONFESS::step2
    step2
    json| rda| rds
    list
  1495. CONFESS::step2.1
    step2.1
    json| rda| rds
    list
  1496. CONFESS::step3
    step3
    json| rda| rds
    list
  1497. CONFESS::step3.1
    step3.1
    json| rda| rds
    list
  1498. CONFESS::step4
    step4
    json| rda| rds
    list
  1499. CONFESS::steps2_4
    steps2_4
    json| rda| rds
    list
  1500. CONFESSdata::CONFESSdata
    CONFESSdata
    json| rda| rds
    list
  1501. ConnectivityMap::instances
    ConnectivityMap: Functional connections between drugs, genes and diseases as revealed by common gene-expression changes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6100 x 14
  1502. ConnectivityMap::rankMatrix
    ConnectivityMap: Functional connections between drugs, genes and diseases as revealed by common gene-expression changes
    csv| xlsx| rda| rds
    data.frame|22283 x 0
  1503. consensus::Agilent
    Agilent microarray gene expression data
    csv| json| rda| rds
    matrix|1000 x 27
  1504. consensus::Huex
    Affymetrix Huex gene expression data
    csv| json| rda| rds
    matrix|1000 x 27
  1505. consensus::RNASeq
    RNA-Seq gene expression data
    csv| json| rda| rds
    matrix|1000 x 27
  1506. consensus::U133A
    Affymetrix U133A gene expression data
    csv| json| rda| rds
    matrix|1000 x 27
  1507. consensusOV::GSE14764.eset
    Sample ExpressionSet from MetaGxOvarian
    rda| rds
    ExpressionSet
  1508. consensusSeekeR::A549_CTCF_MYJ_NarrowPeaks_partial
    Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1509. consensusSeekeR::A549_CTCF_MYJ_Peaks_partial
    Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1510. consensusSeekeR::A549_CTCF_MYN_NarrowPeaks_partial
    Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1511. consensusSeekeR::A549_CTCF_MYN_Peaks_partial
    Sites with the greatest evidence of transcription factor binding for the CTCF transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1512. consensusSeekeR::A549_FOSL2_01_NarrowPeaks_partial
    Genomic regions with the greatest evidence of transcription factor binding for the FOSL2 transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1513. consensusSeekeR::A549_FOSL2_01_Peaks_partial
    Sites with the greatest evidence of transcription factor binding for the FOSL2 transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1514. consensusSeekeR::A549_FOXA1_01_NarrowPeaks_partial
    Genomic regions with the greatest evidence of transcription factor binding for the FOXA1 transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1515. consensusSeekeR::A549_FOXA1_01_Peaks_partial
    Sites with the greatest evidence of transcription factor binding for the FOXA1 transcription factor (for demonstration purpose)
    rda| rds
    GRanges
  1516. consensusSeekeR::A549_NR3C1_CFQ_NarrowPeaks_partial
    Ranges with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFQ). For demonstration purpose.
    rda| rds
    GRanges
  1517. consensusSeekeR::A549_NR3C1_CFQ_Peaks_partial
    Sites with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFQ). For demonstration purpose.
    rda| rds
    GRanges
  1518. consensusSeekeR::A549_NR3C1_CFR_NarrowPeaks_partial
    Ranges with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFR). For demonstration purpose.
    rda| rds
    GRanges
  1519. consensusSeekeR::A549_NR3C1_CFR_Peaks_partial
    Sites with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFR). For demonstration purpose.
    rda| rds
    GRanges
  1520. consensusSeekeR::A549_NR3C1_CFS_NarrowPeaks_partial
    Ranges with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFS). For demonstration purpose.
    rda| rds
    GRanges
  1521. consensusSeekeR::A549_NR3C1_CFS_Peaks_partial
    Sites with the greatest evidence of transcription factor binding for the NR3C1 transcription factor from ENCODE (DDC accession: ENCFF002CFS). For demonstration purpose.
    rda| rds
    GRanges
  1522. consensusSeekeR::NOrMAL_nucleosome_positions
    Nucleosome positions detected by the NOrMAL software using syntetic reads generated using a normal distribution. For demonstration purpose.
    rda| rds
    GRanges
  1523. consensusSeekeR::NOrMAL_nucleosome_ranges
    Ranges associated to nucleosomes detected by the NOrMAL software using syntetic reads generated using a normal distribution. For demonstration purpose.
    rda| rds
    GRanges
  1524. consensusSeekeR::NucPosSimulator_nucleosome_positions
    Nucleosome positions detected by the NucPosSimulator software using syntetic reads generated using a normal distribution. For demonstration purpose.
    rda| rds
    GRanges
  1525. consensusSeekeR::NucPosSimulator_nucleosome_ranges
    Ranges associated to nucleosomes detected by the NucPosSimulator software using syntetic reads generated using a normal distribution. For demonstration purpose.
    rda| rds
    GRanges
  1526. consensusSeekeR::PING_nucleosome_positions
    Nucleosome positions detected by the PING software using syntetic reads generated using a normal distribution. For demonstration purpose.
    rda| rds
    GRanges
  1527. consensusSeekeR::PING_nucleosome_ranges
    Ranges associated to nucleosomes detected by the PING software using syntetic reads generated using a normal distribution. For demonstration purpose.
    rda| rds
    GRanges
  1528. consICA::samples_data
    Samples of gene expression
    rda| rds
    SummarizedExperiment
  1529. conumee::detail_regions
    detail_regions
    rda| rds
    GRanges
  1530. conumee::exclude_regions
    exclude_regions
    rda| rds
    GRanges
  1531. conumee::tcgaBRCA.sentrix2name
    tcgaBRCA.sentrix2name
    json| rda| rds
    character
  1532. COPDSexualDimorphism.data::eqtl
    Gene Expression and Methylation Data from the LGRC
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29307 x 23
  1533. COPDSexualDimorphism.data::expr
    Gene Expression and Methylation Data from the LGRC
    csv| json| rda| rds
    matrix|14497 x 0
  1534. COPDSexualDimorphism.data::expr.meta
    Gene Expression and Methylation Data from the LGRC
    csv| xlsx| json| ndjson| rda| rds
    data.frame|229 x 9
  1535. COPDSexualDimorphism.data::lgrc.genes
    Gene Expression and Methylation Data from the LGRC
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15172 x 10
  1536. COPDSexualDimorphism.data::meta
    Gene Expression and Methylation Data from the LGRC
    csv| xlsx| json| ndjson| rda| rds
    data.frame|254 x 7
  1537. COPDSexualDimorphism.data::methp
    Gene Expression and Methylation Data from the LGRC
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12094 x 0
  1538. coRdon::HD59
    Codon usage in healthy human gut microbiome.
    rda| rds
    codonTable
  1539. coRdon::HD59_KO
    Codon usage based KO enrichment analysis results from the healthy human gut microbiome. For more information, see '?HD59'.
    rda| rds
    AnnotatedDataFrame
  1540. coRdon::HD59_PATHWAYS
    Codon usage based KEGG Pathway enrichment analysis results from a healthy human gut microbiome. For more information, see '?HD59'.
    rda| rds
    AnnotatedDataFrame
  1541. coRdon::LD94
    Codon usage in human gut microbiome in liver cirrhosis.
    rda| rds
    codonTable
  1542. coRdon::LD94_KO
    Codon usage based KO enrichment analysis results from an gut microbiome of an individual with liver cirrhosis. For more information, see '?LD94'.
    rda| rds
    AnnotatedDataFrame
  1543. coRdon::LD94_PATHWAYS
    Codon usage based KEGG Pathway enrichment analysis results from an gut microbiome of an individual with liver cirrhosis. For more information, see '?LD94'.
    rda| rds
    AnnotatedDataFrame
  1544. CoreGx::clevelandSmall_cSet
    Cleaveland_mut RadioSet subsetted and cast as CoreSet
    rda| rds
    CoreSet
  1545. CoreGx::exampleDataMapper
    Example LongTableDataMapper
    rda| rds
    LongTableDataMapper
  1546. CoreGx::merckLongTable
    Merck Drug Combination Data LongTable
    rda| rds
    LongTable
  1547. CoreGx::nci_TRE_small
    NCI-ALMANAC Drug Combination Data TreatmentResponseExperiment Subset
    rda| rds
    TreatmentResponseExperiment
  1548. Cormotif::simu2_compgroup
    Example dataset for Cormotif
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 2
  1549. Cormotif::simu2_groupid
    Example dataset for Cormotif
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 24
  1550. Cormotif::simudata2
    Example dataset for Cormotif
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3000 x 25
  1551. coseq::fietz
    RNA-seq data from the mouse neocortex in Fietz et al. (2012)
    rda| rds
    ExpressionSet
  1552. COSMIC.67::cgc_67
    COSMIC.67 package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|597 x 3
  1553. COSMIC.67::cosmic_67
    COSMIC.67 package
    rda| rds
    CollapsedVCF
  1554. cosmosR::HMDB_mapper_vec
    Toy Input Transcription Data Set
    json| rda| rds
    character
  1555. cosmosR::meta_network
    Meta Prior Knowledge Network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|83557 x 3
  1556. cosmosR::toy_metabolic_input
    Toy Metabolic Input Data
    json| rda| rds
    numeric
  1557. cosmosR::toy_network
    Toy Input Network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 3
  1558. cosmosR::toy_RNA
    Toy Input Transcription Data Set
    json| rda| rds
    numeric
  1559. cosmosR::toy_signaling_input
    Toy Signaling Input
    json| rda| rds
    numeric
  1560. COTAN::ERCCraw
    Data-sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|92 x 1016
  1561. COTAN::raw.dataset
    Data-sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2001 x 815
  1562. COTAN::test.dataset
    Data-sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 1000
  1563. COTAN::test.dataset.clusters1
    Data-sets
    json| rda| rds
    factor
  1564. COTAN::test.dataset.clusters2
    Data-sets
    json| rda| rds
    factor
  1565. COTAN::vignette.cells.origin
    Data-sets
    json| rda| rds
    factor
  1566. COTAN::vignette.merge.clusters
    Data-sets
    json| rda| rds
    factor
  1567. COTAN::vignette.split.clusters
    Data-sets
    json| rda| rds
    factor
  1568. countsimQC::countsimExample
    Example list with three count data sets
    rda| rds
    list
  1569. countsimQC::countsimExample_dfmat
    Example list with three count data sets in different formats
    rda| rds
    list
  1570. CoverageView::DF_H3K36me3
    Example of a coverage matrix using the ChIP-seq data for the H3K36me3 histone modification experiment
    csv| json| rda| rds
    matrix|120 x 0
  1571. CoverageView::DF_H3K36me3_control
    Example of a coverage matrix using the control replicate for the ChIP-seq data for the H3K36me3 histone modification experiment
    csv| json| rda| rds
    matrix|120 x 0
  1572. CoverageView::DF_H3K4me3
    Example of a coverage matrix using the ChIP-seq data for the H3K4me3 histone modification experiment
    csv| json| rda| rds
    matrix|120 x 0
  1573. CoverageView::DF_H3K4me3_ctl
    Example of a coverage matrix using the control replicate for the ChIP-seq data for the H3K4me3 histone modification experiment
    csv| json| rda| rds
    matrix|120 x 0
  1574. CoverageView::DF_H3K4me3_nopeaks_ratios
    Example of a matrix with the ratio of the coverages using the ChIP-seq data for the H3K4me3 histone modification experiment
    csv| json| rda| rds
    matrix|120 x 0
  1575. CoverageView::FoxA1_chr19
    Example of a coverage matrix using the ChIP-seq data for the FoxA1 transcription factor experiment
    csv| json| rda| rds
    matrix|200 x 0
  1576. covRNA::Baca
    The Baca dataset
    rda| rds
    ExpressionSet
  1577. CPSM::Example_TCGA_LGG_FPKM_data
    Example TCGA LGG FPKM data
    rda| rds
    SummarizedExperiment
  1578. CPSM::feature_list_for_Nomogram
    feature list for Nomogram
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 1
  1579. CPSM::Key_Clin_feature_list
    Key Clin feature list
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 1
  1580. CPSM::Key_Clin_features_with_PI_list
    Key Clin features with PI list
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 1
  1581. CPSM::Key_PI_list
    Key PI list
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 1
  1582. CPSM::Key_univariate_features_list
    Key univariate features list
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2391 x 1
  1583. CPSM::Key_univariate_features_with_Clin_list
    Key univariate features with Clin list
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2394 x 1
  1584. CPSM::mean_median_survival_time_data
    mean median survival time data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 3
  1585. CPSM::New_data
    New data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|176 x 0
  1586. CPSM::survCurves_data
    survCurves data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15 x 19
  1587. CPSM::Test_Clin
    Test Clin
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 20
  1588. CPSM::test_FPKM
    test FPKM
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 0
  1589. CPSM::Test_Norm_data
    Test Norm data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 0
  1590. CPSM::Test_PI_data
    Test PI data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 57
  1591. CPSM::Test_results
    Test Results for Survival Prediction
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 8
  1592. CPSM::Test_Uni_sig_data
    Test Uni sig data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 0
  1593. CPSM::Train_Clin
    Train Clin
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 20
  1594. CPSM::Train_Data_Nomogram_input
    Train Data Nomogram input
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 34
  1595. CPSM::train_FPKM
    train FPKM
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 0
  1596. CPSM::Train_Norm_data
    Train Norm data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 0
  1597. CPSM::Train_PI_data
    Train PI data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 57
  1598. CPSM::Train_results
    Training Results for Survival Prediction
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 8
  1599. CPSM::Train_Uni_sig_data
    Train Uni sig data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 0
  1600. cpvSNP::geneSetAnalysis
    Data to run gene set analysis methods
    rda| rds
    list
  1601. cqn::montgomery.subset
    Mongtomery RNA-seq data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23552 x 10
  1602. cqn::sizeFactors.subset
    Mongtomery RNA-seq data.
    json| rda| rds
    numeric
  1603. cqn::uCovar
    Mongtomery RNA-seq data.
    csv| xlsx| rda| rds
    data.frame|23552 x 2
  1604. CrcBiomeScreen::NHSBCSP_screeningData
    NHSBCSP screening dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2252 x 0
  1605. CrcBiomeScreen::Thomas_2018_RelativeAbundance
    Thomas 2018 relative abundance dataset
    rda| rds
    list
  1606. CrcBiomeScreen::ZellerG_2014_RelativeAbundance
    Zeller 2014 relative abundance dataset
    rda| rds
    list
  1607. CRCL18::CRCLmirna
    miRNA profile of colorectal cancer cell lines
    rda| rds
    ExpressionSet
  1608. CRCL18::CRCLmrna
    mrna profile of colorectal cancer cell lines
    rda| rds
    ExpressionSet
  1609. CRISPRball::depmap_22q1_cn
    DepMap copy number data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1754 x 9
  1610. CRISPRball::depmap_22q1_crispr
    DepMap CRISPR screen data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1070 x 9
  1611. CRISPRball::depmap_22q1_crispr_rnai
    DepMap CRISPR & RNAi screen data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1782 x 10
  1612. CRISPRball::depmap_22q1_rnai
    DepMap RNAi screen data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|712 x 9
  1613. CRISPRball::depmap_22q1_TPM
    DepMap expression data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1393 x 9
  1614. crisprBase::AsCas12a
    AsCas12a CrisprNuclease object
    rda| rds
    CrisprNuclease
  1615. crisprBase::BE4max
    BE4max BaseEditor object
    rda| rds
    BaseEditor
  1616. crisprBase::CasRx
    CasRx CrisprNuclease object
    rda| rds
    CrisprNuclease
  1617. crisprBase::Csm
    Csm CrisprNuclease object
    rda| rds
    CrisprNuclease
  1618. crisprBase::enAsCas12a
    enAsCas12a CrisprNuclease object
    rda| rds
    CrisprNuclease
  1619. crisprBase::MAD7
    MAD7 CrisprNuclease object
    rda| rds
    CrisprNuclease
  1620. crisprBase::restrictionEnzymes
    List of Nuclease objects representing common restriction enzymes
    rda| rds
    list
  1621. crisprBase::SaCas9
    SaCas9 CrisprNuclease object
    rda| rds
    CrisprNuclease
  1622. crisprBase::SpCas9
    SpCas9 CrisprNuclease object
    rda| rds
    CrisprNuclease
  1623. crisprBase::SpG
    SpG CrisprNuclease object
    rda| rds
    CrisprNuclease
  1624. crisprDesign::grListExample
    Example of a TxDb object converted to a GRangesList
    rda| rds
    CompressedGRangesList
  1625. crisprDesign::grRepeatsExample
    Example of a GRanges object containing repeat elements
    rda| rds
    GRanges
  1626. crisprDesign::guideSetExample
    Example of a GuideSet object storing gRNA sequences targeting the CDS of IQSEC3
    rda| rds
    GuideSet
  1627. crisprDesign::guideSetExampleFullAnnotation
    Example of a fully-annotated GuideSet object storing gRNA sequences targeting the CDS of IQSEC3
    rda| rds
    GuideSet
  1628. crisprDesign::guideSetExampleWithAlignments
    Example of a GuideSet object storing gRNA sequences targeting the CDS of IQSEC3 with off-target alignments.
    rda| rds
    GuideSet
  1629. crisprDesign::snpObjectExample
    Example of a GRanges object containing SNPs
    rda| rds
    GRanges
  1630. crisprDesign::tssObjectExample
    Example of a GRanges object containing TSS coordinates
    rda| rds
    GRanges
  1631. crisprScore::scoringMethodsInfo
    data.frame detailing available scoring methods
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 7
  1632. crisprShiny::guideSetExample_basic
    Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
    rda| rds
    GuideSet
  1633. crisprShiny::guideSetExample_kras
    Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
    rda| rds
    GuideSet
  1634. crisprShiny::guideSetExample_kras_be
    Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS
    rda| rds
    GuideSet
  1635. crisprShiny::guideSetExample_ntcs
    Example of a GuideSet object storing gRNA sequences targeting the CDS of the human gene KRAS and NTCs
    rda| rds
    GuideSet
  1636. crisprShiny::tooltipAnnotation
    List of tooltip annotations
    csv| json| rda| rds
    list
  1637. crisprShiny::tss_kras
    Example of a 'GenomicRanges' object storing annotated TSS ranges for the human gene KRAS
    rda| rds
    GRanges
  1638. crisprShiny::txdb_kras
    Example of a 'CompressedGenomicRangesList' object storing annotated ranges for the human gene KRAS
    rda| rds
    CompressedGRangesList
  1639. CrispRVariants::gol
    Variant sequences from golden clutch 1 (Burger et al)
    rda| rds
    CrisprSet
  1640. crisprViz::cage
    CAGE peak annotation from AnnotationHub
    rda| rds
    GRanges
  1641. crisprViz::cas12aGuideSet
    Example GuideSet targeting the human LTN1 gene.
    rda| rds
    GuideSet
  1642. crisprViz::cas9GuideSet
    Example GuideSet targeting the human LTN1 gene.
    rda| rds
    GuideSet
  1643. crisprViz::dnase
    DNase I hypersensitive site annotation from AnnotationHub
    rda| rds
    GRanges
  1644. crisprViz::gpr21GeneModel
    CompressedGRangesList describing the human GPR21 gene.
    rda| rds
    CompressedGRangesList
  1645. crisprViz::gpr21GuideSet
    Example GuideSet targeting the human GPR21 gene.
    rda| rds
    GuideSet
  1646. crisprViz::krasGeneModel
    CompressedGRangesList describing the human KRAS gene.
    rda| rds
    CompressedGRangesList
  1647. crisprViz::krasGuideSet
    Example GuideSet targeting the human KRAS gene.
    rda| rds
    GuideSet
  1648. crisprViz::ltn1GeneModel
    CompressedGRangesList describing the human LTN1 gene.
    rda| rds
    CompressedGRangesList
  1649. crisprViz::mmp7GeneModel
    CompressedGRangesList describing the human MMP7 gene.
    rda| rds
    CompressedGRangesList
  1650. crisprViz::mmp7GuideSet
    Example GuideSet targeting the human MMP7 gene.
    rda| rds
    GuideSet
  1651. crisprViz::repeats
    Subset of repeat elements for hg38.
    rda| rds
    GRanges
  1652. crlmm::cnSetExample
    Object of class 'CNSet'
    rda| rds
    CNSet
  1653. crlmm::cnSetExample2
    Object of class 'CNSet'
    rda| rds
    CNSet
  1654. crumblr::df_cellCounts
    Cell counts following interferon treatment
    csv| json| rda| rds
    matrix|16 x 8
  1655. crumblr::hcl
    Cell counts following interferon treatment
    rda| rds
    hclust
  1656. crumblr::info
    Cell counts following interferon treatment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 4
  1657. CSAR::controlSEP3_test
    Partial dataset of a ChIP-seq experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1395 x 5
  1658. CSAR::sampleSEP3_test
    Partial dataset of a ChIP-seq experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|923 x 5
  1659. CSAR::TAIR8_genes_test
    Partial dataset of a ChIP-seq experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27 x 9
  1660. csdR::normal_expression
    Sample expression matrices for CSD
    csv| json| rda| rds
    matrix|399 x 1000
  1661. csdR::sick_expression
    Sample expression matrices for CSD
    csv| json| rda| rds
    matrix|504 x 1000
  1662. CTDquerier::gala
    'CTDdata' for ilustrative purpouses
    rda| rds
    CTDdata
  1663. cTRAP::cmapMetadata
    CMap metadata
    csv| xlsx| json| ndjson| rda| rds
    data.table|296 x 12
  1664. cTRAP::cmapPerturbationsCompounds
    CMap perturbations sample for small molecules
    csv| json| rda| rds
    perturbationChanges|12328 x 22
  1665. cTRAP::cmapPerturbationsKD
    CMap perturbations sample for knockdown experiments
    csv| json| rda| rds
    perturbationChanges|12328 x 26
  1666. cTRAP::counts
    Gene expression data sample
    csv| xlsx| json| ndjson| rda| rds
    data.table|15082 x 6
  1667. cTRAP::diffExprStat
    Differential expression's t-statistics sample
    json| rda| rds
    numeric
  1668. cTRAP::ENCODEmetadata
    ENCODE metadata sample
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|2 x 54
  1669. CTSV::CTSVexample_data
    A simulated data set
    rda| rds
    list
  1670. curatedAdipoRNA::adipo_counts
    Gene counts in differentiating adipocytes
    rda| rds
    RangedSummarizedExperiment
  1671. curatedBladderData::GSE13507_eset
    Predictive value of progression-related gene classifier in primary non-muscle invasive bladder cancer.
    rda| rds
    ExpressionSet
  1672. curatedBladderData::GSE1827_eset
    Bladder cancer outcome and subtype classification by gene expression.
    rda| rds
    ExpressionSet
  1673. curatedBladderData::GSE19915.GPL3883_eset
    Combined gene expression and genomic profiling define two intrinsic molecular subtypes of urothelial carcinoma and gene signatures for molecular grading and outcome.
    rda| rds
    ExpressionSet
  1674. curatedBladderData::GSE19915.GPL5186_eset
    Combined gene expression and genomic profiling define two intrinsic molecular subtypes of urothelial carcinoma and gene signatures for molecular grading and outcome.
    rda| rds
    ExpressionSet
  1675. curatedBladderData::GSE31189_eset
    A candidate molecular biomarker panel for the detection of bladder cancer.
    rda| rds
    ExpressionSet
  1676. curatedBladderData::GSE31684_eset
    Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer.
    rda| rds
    ExpressionSet
  1677. curatedBladderData::GSE32894_eset
    A molecular taxonomy for urothelial carcinoma.
    rda| rds
    ExpressionSet
  1678. curatedBladderData::GSE37317_eset
    Transcriptional signatures of Ral GTPase are associated with aggressive clinicopathologic characteristics in human cancer.
    rda| rds
    ExpressionSet
  1679. curatedBladderData::GSE5287_eset
    Emmprin and survivin predict response and survival following cisplatin-containing chemotherapy in patients with advanced bladder cancer.
    rda| rds
    ExpressionSet
  1680. curatedBladderData::GSE89_eset
    Identifying distinct classes of bladder carcinoma using microarrays.
    rda| rds
    ExpressionSet
  1681. curatedBladderData::PMID17099711.GPL8300_eset
    Regional copy number-independent deregulation of transcription in cancer.
    rda| rds
    ExpressionSet
  1682. curatedBladderData::PMID17099711.GPL91_eset
    Regional copy number-independent deregulation of transcription in cancer.
    rda| rds
    ExpressionSet
  1683. curatedBreastData::curatedBreastData_pData
    curatedBreastData_pData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2719 x 153
  1684. curatedCRCData::GSE11237_eset
    Celecoxib pre-treatment in human colorectal adenocarcinoma patients is associated with gene expression alterations suggestive of diminished cellular proliferation.
    rda| rds
    ExpressionSet
  1685. curatedCRCData::GSE12225.GPL3676_eset
    Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis.
    rda| rds
    ExpressionSet
  1686. curatedCRCData::GSE12945_eset
    An expression module of WIPF1-coexpressed genes identifies patients with favorable prognosis in three tumor types.
    rda| rds
    ExpressionSet
  1687. curatedCRCData::GSE13067_eset
    DNA copy-number alterations underlie gene expression differences between microsatellite stable and unstable colorectal cancers.
    rda| rds
    ExpressionSet
  1688. curatedCRCData::GSE13294_eset
    DNA copy-number alterations underlie gene expression differences between microsatellite stable and unstable colorectal cancers.
    rda| rds
    ExpressionSet
  1689. curatedCRCData::GSE14095_eset
    Gene expression signature and response to the use of leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.
    rda| rds
    ExpressionSet
  1690. curatedCRCData::GSE14333_eset
    Metastasis-Associated Gene Expression Changes Predict Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.
    rda| rds
    ExpressionSet
  1691. curatedCRCData::GSE16125.GPL5175_eset
    Integrative approach for prioritizing cancer genes in sporadic colon cancer.
    rda| rds
    ExpressionSet
  1692. curatedCRCData::GSE17536_eset
    Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer.
    rda| rds
    ExpressionSet
  1693. curatedCRCData::GSE17537_eset
    Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer.
    rda| rds
    ExpressionSet
  1694. curatedCRCData::GSE17538.GPL570_eset
    Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer.
    rda| rds
    ExpressionSet
  1695. curatedCRCData::GSE18105_eset
    MUC12 mRNA expression is an independent marker of prognosis in stage II and stage III colorectal cancer.
    rda| rds
    ExpressionSet
  1696. curatedCRCData::GSE2109_eset
    Expression Project for Oncology (expO)
    rda| rds
    ExpressionSet
  1697. curatedCRCData::GSE21510_eset
    Clinical significance of osteoprotegerin expression in human colorectal cancer.
    rda| rds
    ExpressionSet
  1698. curatedCRCData::GSE21815_eset
    Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modification and is associated with poor prognosis in colorectal cancers.
    rda| rds
    ExpressionSet
  1699. curatedCRCData::GSE24549.GPL5175_eset
    Transcriptome instability in colorectal cancer identified by exon microarray analyses: Associations with splicing factor expression levels and patient survival.
    rda| rds
    ExpressionSet
  1700. curatedCRCData::GSE24550.GPL5175_eset
    Transcriptome instability in colorectal cancer identified by exon microarray analyses: Associations with splicing factor expression levels and patient survival.
    rda| rds
    ExpressionSet
  1701. curatedCRCData::GSE2630_eset
    A gene signature of 8 genes could identify the risk of recurrence and progression in Dukes' B colon cancer patients.
    rda| rds
    ExpressionSet
  1702. curatedCRCData::GSE26682.GPL570_eset
    MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase inhibition in microsatellite unstable colorectal cancers.
    rda| rds
    ExpressionSet
  1703. curatedCRCData::GSE26682.GPL96_eset
    MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase inhibition in microsatellite unstable colorectal cancers.
    rda| rds
    ExpressionSet
  1704. curatedCRCData::GSE26906_eset
    Expression Profiles in Stage II Colon Cancer According to APC Gene Status.
    rda| rds
    ExpressionSet
  1705. curatedCRCData::GSE27544_eset
    Genome-wide profiling characterizes CRCs with genetic instability and specific routes to HLA class I loss and immunoescape
    rda| rds
    ExpressionSet
  1706. curatedCRCData::GSE28702_eset
    Potential responders to FOLFOX therapy for colorectal cancer by Random Forests analysis.
    rda| rds
    ExpressionSet
  1707. curatedCRCData::GSE3294_eset
    Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa.
    rda| rds
    ExpressionSet
  1708. curatedCRCData::GSE33113_eset
    Mutations in the Ras-Raf Axis underlie the prognostic value of CD133 in colorectal cancer.
    rda| rds
    ExpressionSet
  1709. curatedCRCData::GSE39582_eset
    Gene expression classification of colon cancer into molecular subtypes: characterization, validation, and prognostic value.
    rda| rds
    ExpressionSet
  1710. curatedCRCData::GSE3964_eset
    Deciphering cellular states of innate tumor drug responses.
    rda| rds
    ExpressionSet
  1711. curatedCRCData::GSE4045_eset
    Serrated carcinomas form a subclass of colorectal cancer with distinct molecular basis.
    rda| rds
    ExpressionSet
  1712. curatedCRCData::GSE4526_eset
    Gene expression signature for recurrence in stage III colorectal cancers.
    rda| rds
    ExpressionSet
  1713. curatedCRCData::GSE45270_eset
    AMC tubular and serrated adenomas
    rda| rds
    ExpressionSet
  1714. curatedCRCData::TCGA.COAD_eset
    Comprehensive molecular characterization of human colon and rectal cancer.
    rda| rds
    ExpressionSet
  1715. curatedCRCData::TCGA.READ_eset
    Comprehensive molecular characterization of human colon and rectal cancer.
    rda| rds
    ExpressionSet
  1716. curatedCRCData::TCGA.RNASeqV2_eset
    Comprehensive molecular characterization of human colon and rectal cancer.
    rda| rds
    ExpressionSet
  1717. curatedCRCData::TCGA.RNASeqV2.READ_eset
    Comprehensive molecular characterization of human colon and rectal cancer.
    rda| rds
    ExpressionSet
  1718. curatedMetagenomicData::sampleMetadata
    Manually Curated Sample Metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22588 x 141
  1719. curatedOvarianData::E.MTAB.386_eset
    Angiogenic mRNA and microRNA gene expression signature predicts a novel subtype of serous ovarian cancer.
    rda| rds
    ExpressionSet
  1720. curatedOvarianData::GSE12418_eset
    Expression analysis of stage III serous ovarian adenocarcinoma distinguishes a sub-group of survivors.
    rda| rds
    ExpressionSet
  1721. curatedOvarianData::GSE12470_eset
    Gene expression profiling of advanced-stage serous ovarian cancers distinguishes novel subclasses and implicates ZEB2 in tumor progression and prognosis.
    rda| rds
    ExpressionSet
  1722. curatedOvarianData::GSE13876_eset
    Survival-related profile, pathways, and transcription factors in ovarian cancer.
    rda| rds
    ExpressionSet
  1723. curatedOvarianData::GSE14764_eset
    A prognostic gene expression index in ovarian cancer - validation across different independent data sets.
    rda| rds
    ExpressionSet
  1724. curatedOvarianData::GSE17260_eset
    Gene expression profile for predicting survival in advanced-stage serous ovarian cancer across two independent datasets.
    rda| rds
    ExpressionSet
  1725. curatedOvarianData::GSE18520_eset
    A gene signature predictive for outcome in advanced ovarian cancer identifies a survival factor: microfibril-associated glycoprotein 2.
    rda| rds
    ExpressionSet
  1726. curatedOvarianData::GSE19829.GPL570_eset
    Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer.
    rda| rds
    ExpressionSet
  1727. curatedOvarianData::GSE19829.GPL8300_eset
    Gene expression profile of BRCAness that correlates with responsiveness to chemotherapy and with outcome in patients with epithelial ovarian cancer.
    rda| rds
    ExpressionSet
  1728. curatedOvarianData::GSE20565_eset
    A genomic and transcriptomic approach for a differential diagnosis between primary and secondary ovarian carcinomas in patients with a previous history of breast cancer.
    rda| rds
    ExpressionSet
  1729. curatedOvarianData::GSE2109_eset
    IGC EXpression Project for Oncology
    rda| rds
    ExpressionSet
  1730. curatedOvarianData::GSE26193_eset
    miR-141 and miR-200a act on ovarian tumorigenesis by controlling oxidative stress response.
    rda| rds
    ExpressionSet
  1731. curatedOvarianData::GSE26712_eset
    A gene signature predicting for survival in suboptimally debulked patients with ovarian cancer.
    rda| rds
    ExpressionSet
  1732. curatedOvarianData::GSE30009_eset
    Multidrug resistance-linked gene signature predicts overall survival of patients with primary ovarian serous carcinoma.
    rda| rds
    ExpressionSet
  1733. curatedOvarianData::GSE30161_eset
    Multi-gene expression predictors of single drug responses to adjuvant chemotherapy in ovarian carcinoma: predicting platinum resistance.
    rda| rds
    ExpressionSet
  1734. curatedOvarianData::GSE32062.GPL6480_eset
    High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.
    rda| rds
    ExpressionSet
  1735. curatedOvarianData::GSE32063_eset
    High-risk ovarian cancer based on 126-gene expression signature is uniquely characterized by downregulation of antigen presentation pathway.
    rda| rds
    ExpressionSet
  1736. curatedOvarianData::GSE44104_eset
    COL11A1 promotes tumor progression and predicts poor clinical outcome in ovarian cancer.
    rda| rds
    ExpressionSet
  1737. curatedOvarianData::GSE49997_eset
    Validating the impact of a molecular subtype in ovarian cancer on outcomes: a study of the OVCAD Consortium.
    rda| rds
    ExpressionSet
  1738. curatedOvarianData::GSE51088_eset
    POSTN/TGFBI-associated stromal signature predicts poor prognosis in serous epithelial ovarian cancer.
    rda| rds
    ExpressionSet
  1739. curatedOvarianData::GSE6008_eset
    Lysophosphatidic acid-induced transcriptional profile represents serous epithelial ovarian carcinoma and worsened prognosis.
    rda| rds
    ExpressionSet
  1740. curatedOvarianData::GSE6822_eset
    Classification of ovarian tumor samples
    rda| rds
    ExpressionSet
  1741. curatedOvarianData::GSE8842_eset
    Analysis of gene expression in early-stage ovarian cancer.
    rda| rds
    ExpressionSet
  1742. curatedOvarianData::GSE9891_eset
    Novel molecular subtypes of serous and endometrioid ovarian cancer linked to clinical outcome.
    rda| rds
    ExpressionSet
  1743. curatedOvarianData::PMID15897565_eset
    Patterns of gene expression that characterize long-term survival in advanced stage serous ovarian cancers.
    rda| rds
    ExpressionSet
  1744. curatedOvarianData::PMID17290060_eset
    An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer.
    rda| rds
    ExpressionSet
  1745. curatedOvarianData::PMID19318476_eset
    Microarray analysis of early stage serous ovarian cancers shows profiles predictive of favorable outcome.
    rda| rds
    ExpressionSet
  1746. curatedOvarianData::TCGA_eset
    Integrated genomic analyses of ovarian carcinoma.
    rda| rds
    ExpressionSet
  1747. curatedOvarianData::TCGA.mirna.8x15kv2_eset
    Integrated genomic analyses of ovarian carcinoma.
    rda| rds
    ExpressionSet
  1748. curatedOvarianData::TCGA.RNASeqV2_eset
    Integrated genomic analyses of ovarian carcinoma.
    rda| rds
    ExpressionSet
  1749. curatedPCaData::template_prad
    Template for curatedPCaData clinical fields
    csv| xlsx| json| ndjson| rda| rds
    data.frame|68 x 6
  1750. curatedTBData::Clinical_Information
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|63 x 4
  1751. curatedTBData::DataSummary
    Summarized tuberculosis studies included in the curatedTBData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 14
  1752. curatedTBData::SignatureInfoTraining
    Summarized results for tuberculosis gene signatures and their corresponding discovery/training studies
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54 x 2
  1753. cypress::asd_noprop_param
    Simulation parameters estimated from ASD study
    rda| rds
    est_out
  1754. cypress::asd_nopropPower
    Power calculation results From ASD data
    rda| rds
    cypress_out
  1755. cypress::ASD_prop
    SimFromData example raw input data
    rda| rds
    SummarizedExperiment
  1756. cypress::GSE60424_param
    Simulation parameters estimated from immune-related disease (IAD) study (GSE60424)
    rda| rds
    est_out
  1757. cypress::GSE60424Power
    Power calculation results from immune-related disease (IAD) study (GSE60424)
    rda| rds
    cypress_out
  1758. cypress::ibd_prop_param
    Simulation parameters estimated from pediatric inflammatory bowel disease (IBD) study (GSE57945)
    rda| rds
    est_out
  1759. cypress::ibd_propPower
    Power calculation results from pediatric inflammatory bowel disease (IBD) study (GSE57945)
    rda| rds
    cypress_out
  1760. cytoKernel::cytoHDBMW
    Example of processed dimensionally reduced flow cytometry (marker median intensities) Bodenmiller_BCR_XL_flowSet() expression dataset from HDCytoData Bioconductor data package.
    rda| rds
    SummarizedExperiment
  1761. cytomapper::pancreasImages
    Example CytoImageList object of image files
    rda| rds
    CytoImageList
  1762. cytomapper::pancreasMasks
    Example CytoImageList object of segmentation masks
    rda| rds
    CytoImageList
  1763. cytomapper::pancreasSCE
    Example SingleCellExperiment object
    rda| rds
    SingleCellExperiment
  1764. cytoMEM::MEM_matrix
    MEM matrix
    csv| json| rda| rds
    matrix|7 x 25
  1765. cytoMEM::MEM_values
    MEM values
    csv| json| rda| rds
    list
  1766. cytoMEM::PBMC
    Normal Human Peripheral Blood Mononuclear Cells (PBMCs)
    csv| json| rda| rds
    matrix|30000 x 26
  1767. CytoPipeline::OMIP021Samples
    OMIP021Samples dataset
    rda| rds
    flowSet
  1768. dada2::errBalancedF
    An empirical error matrix.
    csv| json| rda| rds
    matrix|16 x 41
  1769. dada2::errBalancedR
    An empirical error matrix.
    csv| json| rda| rds
    matrix|16 x 41
  1770. dada2::tperr1
    An empirical error matrix.
    csv| json| rda| rds
    matrix|16 x 41
  1771. dagLogo::ecoli.proteome
    An object of 'Proteome-class' representing the _Escherichia coli_ proteome.
    rda| rds
    Proteome
  1772. dagLogo::proteome.example
    An object of 'Proteome-class' representing the subset of _Drosophila melanogaster_ proteome.
    rda| rds
    Proteome
  1773. dagLogo::seq.example
    An object of 'dagPeptides-class' representing acetylated lysine-containing peptides.
    rda| rds
    dagPeptides
  1774. daMA::cinfo
    Vector indexing the matrix cmat
    json| rda| rds
    numeric
  1775. daMA::cinfoB.AB
    Vector indexing the matrix cmatB.AB
    json| rda| rds
    numeric
  1776. daMA::cmat
    Contrast matrix describing the experimental questions
    csv| json| rda| rds
    matrix|11 x 9
  1777. daMA::cmatB.AB
    Contrast matrix describing the experimental questions
    csv| json| rda| rds
    matrix|4 x 9
  1778. daMA::data.3x2
    3x2 microarray data
    csv| json| rda| rds
    matrix|30012 x 18
  1779. daMA::designs.basic
    Basic designs for two-colour factorial 3 x 2 microarray data
    csv| json| rda| rds
    list
  1780. daMA::designs.composite
    Composite designs for two-colour factorial 3 x 2 microarray data
    csv| json| rda| rds
    list
  1781. daMA::id.3x2
    A vector of length 30012 containing numeric identifiers of the genes from the microarray dataset data.3x2.
    json| rda| rds
    numeric
  1782. DAMEfinder::extractbams_output
    extract_bams() output.
    rda| rds
    list
  1783. DAMEfinder::readtuples_output
    read_tuples() output.
    csv| json| rda| rds
    list
  1784. DaMiRseq::data_min
    Example gene-expression dataset for DaMiRseq package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 87
  1785. DaMiRseq::data_norm
    A dataset with a normalized matrix to test several DaMiRseq functions: sample data are a subset of Genotype-Tissue Expression (GTEx) RNA-Seq database (dbGap Study Accession: phs000424.v6.p1)
    rda| rds
    SummarizedExperiment
  1786. DaMiRseq::data_reduced
    Example gene-expression dataset for DaMiRseq package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 138
  1787. DaMiRseq::data_relief
    Example ranking dataset for DaMiRseq package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|87 x 2
  1788. DaMiRseq::df
    Example gene-expression dataset for DaMiRseq package
    rda| rds
    DFrame
  1789. DaMiRseq::SE
    Example gene-expression dataset for DaMiRseq package
    rda| rds
    SummarizedExperiment
  1790. DaMiRseq::selected_features
    Example gene-expression dataset for DaMiRseq package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 7
  1791. DaMiRseq::SEtest_norm
    A sample dataset with a normalized count matrix for "testthat" functions.
    rda| rds
    SummarizedExperiment
  1792. DaMiRseq::sv
    Example Surrogate Variables dataset for DaMiRseq package
    csv| json| rda| rds
    matrix|40 x 0
  1793. Damsel::dros_counts
    Example Drosophila DamID counts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80000 x 11
  1794. dandelionR::demo_airr
    Example AIRR Dataset for V(D)J Analysis
    json| rda| rds
    list
  1795. dandelionR::demo_sce
    Example SCE Dataset that does not contain V(D)J information
    rda| rds
    SingleCellExperiment
  1796. dandelionR::sce_vdj
    Example Dataset for V(D)J Analysis
    rda| rds
    SingleCellExperiment
  1797. DAPARdata::Exp1_R2_pept
    Exp1_R2_pept dataset
    rda| rds
    MSnSet
  1798. DAPARdata::Exp1_R2_prot
    Exp1_R2_prot dataset
    rda| rds
    MSnSet
  1799. DAPARdata::Exp1_R25_pept
    Exp1_R25_pept dataset
    rda| rds
    MSnSet
  1800. DAPARdata::Exp1_R25_prot
    Exp1_R25_prot dataset
    rda| rds
    MSnSet
  1801. DAPARdata::Exp2_R10_pept
    Exp2_R10_pept dataset
    rda| rds
    MSnSet
  1802. DAPARdata::Exp2_R10_prot
    Exp2_R10_prot dataset
    rda| rds
    MSnSet
  1803. DAPARdata::Exp2_R100_pept
    Exp2_R100_pept dataset
    rda| rds
    MSnSet
  1804. DAPARdata::Exp2_R100_prot
    Exp2_R100_prot dataset
    rda| rds
    MSnSet
  1805. DAPARdata::Exp2_R2_pept
    Exp2_R2_pept dataset
    rda| rds
    MSnSet
  1806. DAPARdata::Exp2_R2_prot
    Exp2_R2_prot dataset
    rda| rds
    MSnSet
  1807. DaparToolshed::subR25pept
    subR25pept dataset
    rda| rds
    QFeatures
  1808. DaparToolshed::subR25prot
    subR25prot dataset
    rda| rds
    QFeatures
  1809. dar::metaHIV_phy
    Phyloseq object from metaHIV project
    rda| rds
    phyloseq
  1810. dar::test_prep_rec
    PrepRecipe for metaHIV_phy data
    rda| rds
    PrepRecipe
  1811. dar::test_rec
    Recipe for metaHIV_phy data
    rda| rds
    Recipe
  1812. DART::dataDART
    Example data for DART package
    json| rda| rds
    list
  1813. davidTiling::gff
    Genomic features of Saccharomyces cerevisiae
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21729 x 13
  1814. davidTiling::probeAnno
    An environment with probe mapping information for the Scerevisiae tiling array
    rda| rds
    environment
  1815. davidTiling::yeastFeatures
    A data.frame with metadata about the features in SGD GFF files
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 1
  1816. dcanr::sim102
    Simulated expression data with knock-outs
    rda| rds
    list
  1817. DCATS::Haber2017
    Count matrices of intestinal epithelial scRNA-seq data from three conditions
    rda| rds
    list
  1818. DCATS::Kang2017
    Count matrices of 8 pooled lupus patient samples within two conditions
    rda| rds
    list
  1819. DCATS::Ren2021
    Count matrix and metadata of a large COVID-19 scRNA-seq data cohort.
    json| rda| rds
    list
  1820. DCATS::simulation
    Simulated dataset with two conditions
    rda| rds
    list
  1821. dcGSA::dcGSAtest
    dcGSA test data
    json| rda| rds
    list
  1822. dearseq::baduel_gmt
    Small portion of RNA-seq data from plant physiology study.
    csv| json| rda| rds
    list
  1823. dearseq::design
    Small portion of RNA-seq data from plant physiology study.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 11
  1824. dearseq::expr_norm_corr
    Small portion of RNA-seq data from plant physiology study.
    csv| json| rda| rds
    matrix|2454 x 48
  1825. dearseq::PBT_gmt
    PBT gene sets related to kidney transplant
    csv| json| rda| rds
    list
  1826. decemedip::example.hg19.ref.anc.se
    Subset of hg19.ref.anc.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  1827. decemedip::example.hg19.ref.cts.se
    Subset of hg19.ref.cts.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  1828. decemedip::example.pdx.counts.anc.se
    Subset of pdx.counts.anc.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  1829. decemedip::example.pdx.counts.cts.se
    Subset of pdx.counts.cts.se as a lightweighted example
    rda| rds
    RangedSummarizedExperiment
  1830. decemedip::hg19.ref.anc.se
    Hg19 genomic information of anchor CpGs (i.e., all-tissue unmethylated/methylation probes) inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6). Used as default in 'decemedip'.
    rda| rds
    RangedSummarizedExperiment
  1831. decemedip::hg19.ref.cts.se
    Hg19 genomic information of cell-type-specific marker CpGs inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6).
    rda| rds
    RangedSummarizedExperiment
  1832. decemedip::hg38.ref.anc.se
    Hg38 genomic information of cell-type-specific marker CpGs inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6).
    rda| rds
    RangedSummarizedExperiment
  1833. decemedip::hg38.ref.cts.se
    Hg38 genomic information of cell-type-specific marker CpGs inferred from DNA methylation atlas published by Moss 2018 Nat. Commun. (https://www.nature.com/articles/s41467-018-07466-6).
    rda| rds
    RangedSummarizedExperiment
  1834. decemedip::pdx.counts.anc.se
    MeDIP-seq read counts on reference anchor CpGs of 3 PDX samples from Berchuck et al. 2022
    rda| rds
    RangedSummarizedExperiment
  1835. decemedip::pdx.counts.cts.se
    MeDIP-seq read counts on reference cell type-specific CpGs of 3 PDX samples from Berchuck et al. 2022
    rda| rds
    RangedSummarizedExperiment
  1836. DECIPHER::BLOSUM
    BLOSUM Amino Acid Substitution Matrices
    json| rda| rds
    array
  1837. DECIPHER::deltaGrules
    Free Energy of Hybridization of Probe/Target Quadruplets on Microarrays
    json| rda| rds
    array
  1838. DECIPHER::deltaGrulesRNA
    Pseudoenergy Parameters for RNA Quadruplets
    json| rda| rds
    array
  1839. DECIPHER::deltaHrules
    Change in Enthalpy of Hybridization of DNA/DNA Quadruplets in Solution
    json| rda| rds
    array
  1840. DECIPHER::deltaHrulesRNA
    Change in Enthalpy of Hybridization of RNA/RNA Quadruplets in Solution
    json| rda| rds
    array
  1841. DECIPHER::deltaSrules
    Change in Entropy of Hybridization of DNA/DNA Quadruplets in Solution
    json| rda| rds
    array
  1842. DECIPHER::deltaSrulesRNA
    Change in Entropy of Hybridization of RNA/RNA Quadruplets in Solution
    json| rda| rds
    array
  1843. DECIPHER::HEC_MI1
    Mutual Information for Protein Secondary Structure Prediction
    json| rda| rds
    array
  1844. DECIPHER::HEC_MI2
    Mutual Information for Protein Secondary Structure Prediction
    json| rda| rds
    array
  1845. DECIPHER::MIQS
    MIQS Amino Acid Substitution Matrix
    csv| json| rda| rds
    matrix|25 x 25
  1846. DECIPHER::MMLSUM
    MMLSUM Amino Acid Substitution Matrices
    json| rda| rds
    array
  1847. DECIPHER::NonCodingRNA_Archaea
    NonCoding Models for Common Non-Coding RNA Families
    rda| rds
    list
  1848. DECIPHER::NonCodingRNA_Bacteria
    NonCoding Models for Common Non-Coding RNA Families
    rda| rds
    list
  1849. DECIPHER::NonCodingRNA_Eukarya
    NonCoding Models for Common Non-Coding RNA Families
    rda| rds
    list
  1850. DECIPHER::PAM
    PAM Amino Acid Substitution Matrices
    json| rda| rds
    array
  1851. DECIPHER::PFASUM
    PFASUM Amino Acid Substitution Matrices
    json| rda| rds
    array
  1852. DECIPHER::RESTRICTION_ENZYMES
    Common Restriction Enzyme's Cut Sites
    json| rda| rds
    character
  1853. DECIPHER::TrainingSet_16S
    Training Set for Classification of 16S rRNA Gene Sequences
    rda| rds
    Taxa
  1854. DeconvoBuddies::est_prop
    Bisque Estimated Cell Type Proportions for DLPFC bulk RNA-seq data
    csv| json| rda| rds
    matrix|110 x 7
  1855. DeconvoBuddies::est_prop_test
    Test Estimated Cell Type Proportions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 5
  1856. DeconvoBuddies::marker_stats_1vAll
    1vAll Marker Statistics example data
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|35000 x 8
  1857. DeconvoBuddies::marker_test
    Markers stats from sce_DLPFC_example
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|762 x 10
  1858. DeconvoBuddies::RNAScope_prop
    Cell Type Proportions estimated from RNAScope
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 9
  1859. DeconvoBuddies::rse_bulk_test
    Test bulk rse dataset
    rda| rds
    RangedSummarizedExperiment
  1860. DeconvoBuddies::sce_ab
    Toy SCE object for testing
    rda| rds
    SingleCellExperiment
  1861. deconvR::HumanCellTypeMethAtlas
    The comprehensive human methylome reference atlas
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6105 x 26
  1862. deconvR::IlluminaMethEpicB5ProbeIDs
    A dataset Illumina probe IDs of 400000 genomic loci (identified using the “seqnames”, “ranges”, and “strand” values).
    rda| rds
    GRanges
  1863. DeeDeeExperiment::clusterPro_res
    'clusterPro_res'
    rda| rds
    list
  1864. DeeDeeExperiment::de_limma
    A sample 'MArrayLM' object
    json| rda| rds
    MArrayLM
  1865. DeeDeeExperiment::de_named_list
    de_named_list
    rda| rds
    list
  1866. DeeDeeExperiment::dge_exact_IFNg_both
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  1867. DeeDeeExperiment::dge_exact_IFNg_naive
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  1868. DeeDeeExperiment::dge_exact_Salm_both
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  1869. DeeDeeExperiment::dge_exact_Salm_naive
    A sample 'DGEExact' object
    json| rda| rds
    DGEExact
  1870. DeeDeeExperiment::dge_lrt_IFNg_both
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  1871. DeeDeeExperiment::dge_lrt_IFNg_naive
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  1872. DeeDeeExperiment::dge_lrt_Salm_both
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  1873. DeeDeeExperiment::dge_lrt_Salm_naive
    A sample 'DGELRT' object
    rda| rds
    DGELRT
  1874. DeeDeeExperiment::enrichr_res
    'enrichr_res'
    csv| json| rda| rds
    list
  1875. DeeDeeExperiment::fgseaRes
    'fgseaRes'
    csv| xlsx| json| ndjson| rda| rds
    data.table|4576 x 8
  1876. DeeDeeExperiment::gost_res
    'gost_res'
    json| rda| rds
    list
  1877. DeeDeeExperiment::gsea_res
    'gsea_res'
    rda| rds
    gseaResult
  1878. DeeDeeExperiment::IFNg_both
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  1879. DeeDeeExperiment::IFNg_naive
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  1880. DeeDeeExperiment::muscat_res
    'muscat_res'
    rda| rds
    list
  1881. DeeDeeExperiment::Salm_both
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  1882. DeeDeeExperiment::Salm_naive
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  1883. DeeDeeExperiment::topGO_results_list
    'topGO_results_list'
    csv| json| rda| rds
    list
  1884. DeepPINCS::antiviral_drug
    List of antiviral drugs with SMILES strings
    csv| xlsx| json| ndjson| rda| rds
    data.frame|81 x 2
  1885. DeepPINCS::example_bioassay
    Example Data for PubChem AID1706 bioassay
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5000 x 4
  1886. DeepPINCS::example_cci
    Example Data for Chemical-Chemical Interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 3
  1887. DeepPINCS::example_chem
    Example Data for Compounds
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 2
  1888. DeepPINCS::example_cpi
    Example Data for Compound-Protein Interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6728 x 3
  1889. DeepPINCS::example_pd
    Example Data for Primer-Dimer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|319 x 3
  1890. DeepPINCS::example_ppi
    Example Data for Protein-Protein Interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5000 x 3
  1891. DeepPINCS::example_prot
    Example Data for Proteins
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9498 x 2
  1892. DeepPINCS::SARS_CoV2_3CL_Protease
    Amino Acid Sequence for the SARS coronavirus 3C-like Protease
    json| rda| rds
    character
  1893. deepSNV::counts
    Example count table
    csv| json| rda| rds
    matrix|21 x 22
  1894. deepSNV::HIVmix
    Example .bam data and true SNVs.
    rda| rds
    deepSNV
  1895. deepSNV::phiX
    Example phiX data
    rda| rds
    deepSNV
  1896. deepSNV::pi
    Example prior
    csv| json| rda| rds
    matrix|3917 x 0
  1897. deepSNV::RCC
    Example RCC data
    rda| rds
    deepSNV
  1898. deepSNV::trueSNVs
    Example .bam data and true SNVs.
    csv| json| rda| rds
    matrix|1512 x 5
  1899. DeepTarget::OntargetM
    An object containing a small part of the data from the Cancer Dependency Map (depmap.org) to demonstrate in DeepTarget pipeline
    json| rda| rds
    list
  1900. DegCre::DexNR3C1
    DegCre input data for examples.
    rda| rds
    list
  1901. DegNorm::coverage_res_chr21
    Example CoverageClass data
    rda| rds
    CoverageClass
  1902. DegNorm::res_DegNorm_chr21
    Example DegNormClass data
    rda| rds
    DegNormClass
  1903. DEGraph::annLoi2008
    Annotation data used in the DEGraph package vignette
    csv| json| rda| rds
    matrix|227 x 5
  1904. DEGraph::classLoi2008
    Tamoxifen treatment resistance status data used in the DEGraph package vignette
    json| rda| rds
    numeric
  1905. DEGraph::exprLoi2008
    Gene expression data used in the DEGraph package vignette
    csv| json| rda| rds
    matrix|227 x 0
  1906. DEGraph::grListKEGG
    KEGG networks used in the DEGraph package vignette
    rda| rds
    list
  1907. DEGreport::geneInfo
    data.frame with chromose information for each gene
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49 x 2
  1908. DEGreport::humanGender
    DGEList object for DE genes betwen Male and Females
    rda| rds
    SummarizedExperiment
  1909. DelayedTensor::human_mid_brain
    Matrix object of human mid brain data
    csv| json| rda| rds
    matrix|500 x 0
  1910. DelayedTensor::mouse_mid_brain
    Matrix object of mouse mid brain data
    csv| json| rda| rds
    matrix|500 x 0
  1911. deltaCaptureC::bigBinSize
    Big bin size
    json| rda| rds
    numeric
  1912. deltaCaptureC::binnedDeltaPlot
    Plot of Binned Delta Counts
    rda| rds
    gg
  1913. deltaCaptureC::binnedDeltaSE
    Binned difference of mean capture-C counts between EScells and Neurons
    rda| rds
    RangedSummarizedExperiment
  1914. deltaCaptureC::binnedSummarizedExperiment
    Binned Capture-C counts of EScells and Neurons
    rda| rds
    RangedSummarizedExperiment
  1915. deltaCaptureC::deltaSE
    Difference of mean capture-C counts between EScells and Neurons
    rda| rds
    RangedSummarizedExperiment
  1916. deltaCaptureC::miniDeltaSE
    Difference of mean capture-C counts between EScells and Neurons
    rda| rds
    RangedSummarizedExperiment
  1917. deltaCaptureC::miniSE
    Capture-C counts of EScells and Neurons
    rda| rds
    RangedSummarizedExperiment
  1918. deltaCaptureC::miniSEDF
    Capture-C counts of EScells and Neurons
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1909 x 7
  1919. deltaCaptureC::numPermutations
    Number of permutations used in example permutation testing.
    json| rda| rds
    numeric
  1920. deltaCaptureC::plotTitle
    Title for delta capture-C plot
    json| rda| rds
    character
  1921. deltaCaptureC::pValue
    P-value
    json| rda| rds
    numeric
  1922. deltaCaptureC::regionOfInterest
    Region of interest surrounding the viewpoint
    rda| rds
    GRanges
  1923. deltaCaptureC::significanceType
    Type for testing significance
    json| rda| rds
    character
  1924. deltaCaptureC::significantRegions
    Regions of significant remodeling in example data
    rda| rds
    GRanges
  1925. deltaCaptureC::significantRegionsPlot
    A plot of the significant regions in the sample data.
    rda| rds
    gg
  1926. deltaCaptureC::smallBins
    Small Bins
    rda| rds
    GRanges
  1927. deltaCaptureC::smallBinSize
    Small Bin Size
    json| rda| rds
    numeric
  1928. deltaCaptureC::smallerDeltaSE
    A subset of miniDeltaSE.
    rda| rds
    RangedSummarizedExperiment
  1929. deltaCaptureC::smallSetOfSmallBins
    Small Bins
    rda| rds
    GRanges
  1930. deltaCaptureC::viewpointRegion
    Region surrounding the viewpoint
    rda| rds
    GRanges
  1931. deltaCaptureC::weightsExampleBins
    Weights example bins
    rda| rds
    GRanges
  1932. deltaCaptureC::weightsExampleGr
    Weights example
    rda| rds
    GRanges
  1933. deltaGseg::pvals
    pvalues data
    rda| rds
    pvclust
  1934. deltaGseg::simtraj
    Sample trajectory series
    rda| rds
    Trajectories
  1935. deltaGseg::simtraj.tr
    Sample trajectory series
    rda| rds
    TransTrajectories
  1936. deltaGseg::simtraj.tr2
    Sample trajectory series
    rda| rds
    TransTrajectories
  1937. deltaGseg::traj1
    Sample trajectory series
    rda| rds
    Trajectories
  1938. deltaGseg::traj1.denoise
    Sample trajectory series
    rda| rds
    SegTrajectories
  1939. deltaGseg::traj1.ss
    Sample trajectory series
    rda| rds
    SegSeriesTrajectories
  1940. deltaGseg::traj1.tr
    Sample trajectory series
    rda| rds
    TransTrajectories
  1941. DeMAND::bcellAnno
    Annotation for the expression data
    csv| json| rda| rds
    matrix|1577 x 2
  1942. DeMAND::bcellExp
    B cell expression data
    csv| json| rda| rds
    matrix|1577 x 12
  1943. DeMAND::bcellNetwork
    B cell network
    csv| json| rda| rds
    matrix|682 x 4
  1944. DeMAND::caseIndex
    Case sample index
    json| rda| rds
    integer
  1945. DeMAND::controlIndex
    Control sample index
    json| rda| rds
    integer
  1946. DeMixT::test.data.2comp
    Simulated two-component test data
    rda| rds
    list
  1947. DeMixT::test.data.3comp
    Simulated three-component mixed cell line test data
    rda| rds
    list
  1948. demuxmix::csf
    Hashtag oligonucleotide (HTO) counts from 2,590 droplets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2590 x 4
  1949. demuxSNP::commonvariants_1kgenomes_subset
    Sample vcf file
    rda| rds
    CollapsedVCF
  1950. demuxSNP::multiplexed_scrnaseq_sce
    SingleCellExperiment object containing multiplexed RNA and HTO data from six biological smamples
    rda| rds
    SingleCellExperiment
  1951. demuxSNP::vartrix_consensus_snps
    Sample VarTrix output
    csv| json| rda| rds
    matrix|2542 x 0
  1952. DEP::DiUbi
    DiUbi - Ubiquitin interactors for different diubiquitin-linkages (UbIA-MS dataset)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4071 x 72
  1953. DEP::DiUbi_ExpDesign
    Experimental design of the DiUbi dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 3
  1954. DEP::UbiLength
    UbiLength - Ubiquitin interactors of different linear ubiquitin lengths (UbIA-MS dataset)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3006 x 23
  1955. DEP::UbiLength_ExpDesign
    Experimental design of the UbiLength dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 3
  1956. DepecheR::testData
    A 14 color flow cytometry dataset for example execution and playing around
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20000 x 16
  1957. DepecheR::testDataDepeche
    A depeche clustering of the testData set
    json| rda| rds
    list
  1958. DepecheR::testDataSNE
    SNE of the testData set
    json| rda| rds
    list
  1959. DepInfeR::drug_response_GDSC
    drug_response_GDSC
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|38174 x 14
  1960. DepInfeR::mutation_GDSC
    mutation_GDSC
    csv| xlsx| json| ndjson| rda| rds
    data.frame|138 x 15
  1961. DepInfeR::responseInput
    responseInput
    csv| json| rda| rds
    matrix|66 x 126
  1962. DepInfeR::targetInput
    targetInput
    csv| json| rda| rds
    matrix|66 x 118
  1963. DepInfeR::targetMatrix
    targetMatrix
    csv| json| rda| rds
    matrix|66 x 278
  1964. DepInfeR::targetsGDSC
    targetsGDSC
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1663 x 6
  1965. derfinder::genomeData
    Genome samples processed data
    rda| rds
    list
  1966. derfinder::genomeDataRaw
    Genome samples processed data
    rda| rds
    list
  1967. derfinder::genomeFstats
    F-statistics for the example data
    rda| rds
    Rle
  1968. derfinder::genomeInfo
    Genome samples information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31 x 5
  1969. derfinder::genomeRegions
    Candidate DERs for example data
    rda| rds
    list
  1970. derfinder::genomicState
    Genomic State for Hsapiens.UCSC.hg19.knownGene
    rda| rds
    CompressedGRangesList
  1971. derfinderData::brainspanPheno
    BrainSpan phenotype information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 7
  1972. DEsingle::counts
    TestData: A test dataset for DEsingle
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 150
  1973. DEsingle::group
    TestData: A test dataset for DEsingle
    json| rda| rds
    factor
  1974. DeSousa2013::AMC_CRC_clinical
    Data used in the package DeSousa2013
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 4
  1975. DeSousa2013::AMC_sample_head
    Data used in the package DeSousa2013
    csv| xlsx| json| ndjson| rda| rds
    data.frame|109 x 2
  1976. DeSousa2013::cents
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|146 x 3
  1977. DeSousa2013::clu.pred
    Data used in the package DeSousa2013
    json| rda| rds
    integer
  1978. DeSousa2013::clus
    Data used in the package DeSousa2013
    json| rda| rds
    integer
  1979. DeSousa2013::clus.f
    Data used in the package DeSousa2013
    json| rda| rds
    integer
  1980. DeSousa2013::data4surv
    Data used in the package DeSousa2013
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 3
  1981. DeSousa2013::diffGenes
    Data used in the package DeSousa2013
    json| rda| rds
    character
  1982. DeSousa2013::diffGenes.f
    Data used in the package DeSousa2013
    json| rda| rds
    character
  1983. DeSousa2013::err
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|100 x 30
  1984. DeSousa2013::gapsmat
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|6 x 6
  1985. DeSousa2013::gapsSE
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|6 x 6
  1986. DeSousa2013::gclu.f
    Data used in the package DeSousa2013
    rda| rds
    hclust
  1987. DeSousa2013::ge.all
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|54675 x 90
  1988. DeSousa2013::nam.ord
    Data used in the package DeSousa2013
    json| rda| rds
    character
  1989. DeSousa2013::pam.rslt
    Data used in the package DeSousa2013
    rda| rds
    pamrtrained
  1990. DeSousa2013::pred
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|90 x 3
  1991. DeSousa2013::sdat
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|7846 x 90
  1992. DeSousa2013::sdat.f
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|4762 x 85
  1993. DeSousa2013::sdat.sig
    Data used in the package DeSousa2013
    csv| json| rda| rds
    matrix|146 x 90
  1994. DeSousa2013::selPbs
    Data used in the package DeSousa2013
    json| rda| rds
    character
  1995. DeSousa2013::signature
    Data used in the package DeSousa2013
    json| rda| rds
    character
  1996. DeSousa2013::silh
    Data used in the package DeSousa2013
    csv| rda| rds
    silhouette|90 x 3
  1997. DeSousa2013::surv
    Data used in the package DeSousa2013
    rda| rds
    survfit
  1998. DeSousa2013::survstats
    Data used in the package DeSousa2013
    rda| rds
    survdiff
  1999. DeSousa2013::thresh
    Data used in the package DeSousa2013
    json| rda| rds
    numeric
  2000. DeSousa2013::uniGenes
    Data used in the package DeSousa2013
    json| rda| rds
    character
  2001. DESpace::LIBD_subset
    Subset from the human DLPFC 10x Genomics Visium dataset of the 'spatialLIBD' package
    rda| rds
    SpatialExperiment
  2002. DESpace::results_individual_svg
    Results from 'individual_svg' function
    csv| json| rda| rds
    list
  2003. DESpace::results_svg_test
    Results from 'svg_test' function
    json| rda| rds
    list
  2004. destiny::guo
    Guo at al. mouse embryonic stem cell qPCR data
    rda| rds
    ExpressionSet
  2005. destiny::guo_norm
    Guo at al. mouse embryonic stem cell qPCR data
    rda| rds
    ExpressionSet
  2006. DEWSeq::SLBP_K562_w50s20
    ENCODE eCLIP data for SLBP in K562, low count filtered
    rda| rds
    DESeqDataSet
  2007. DEWSeq::slbpDds
    ENCODE eCLIP data SLBP in K562
    rda| rds
    DESeqDataSet
  2008. DEWSeq::slbpRegions
    ENCODE eCLIP data SLBP in K562
    csv| xlsx| json| ndjson| rda| rds
    data.frame|110 x 21
  2009. DEWSeq::slbpVst
    ENCODE eCLIP data SLBP in K562
    csv| json| rda| rds
    matrix|28569 x 3
  2010. DEWSeq::slbpWindows
    ENCODE eCLIP data SLBP in K562
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8841 x 20
  2011. DExMAdata::avaliableIDs
    Identifiers available in allSameID() function
    json| rda| rds
    character
  2012. DExMAdata::avaliableOrganism
    Organism available in allSameID() function
    json| rda| rds
    character
  2013. DExMAdata::ExpressionSetStudy5
    DExMA synthetic data
    rda| rds
    ExpressionSet
  2014. DExMAdata::IDsDExMA
    Gene ID information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2113450 x 4
  2015. DExMAdata::listExpressionSets
    DExMA synthetic data
    rda| rds
    list
  2016. DExMAdata::listMatrixEX
    DExMA synthetic data
    json| rda| rds
    list
  2017. DExMAdata::listPhenodatas
    DExMA synthetic data
    json| rda| rds
    list
  2018. DExMAdata::maObject
    DExMA synthetic data
    csv| json| rda| rds
    list
  2019. DExMAdata::maObjectDif
    DExMA synthetic data
    csv| json| rda| rds
    list
  2020. DExMAdata::SynonymsDExMA
    Other names for identifiers information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|833801 x 3
  2021. DFP::rmadataset
    A sample ExpressionSet object
    rda| rds
    ExpressionSet
  2022. DiffBind::tamoxifen
    Tamoxifen resistance dataset used for DBA examples
    rda| rds
    DBA
  2023. DiffBind::tamoxifen
    Tamoxifen resistance dataset used for DBA examples
    rda| rds
    DBA
  2024. DiffBind::tamoxifen
    Tamoxifen resistance dataset used for DBA examples
    rda| rds
    DBA
  2025. DiffBind::tamoxifen.greylist
    Tamoxifen resistance dataset used for DBA examples
    rda| rds
    list
  2026. diffcoexp::exprs.1
    exprs.1
    csv| json| rda| rds
    matrix|400 x 14
  2027. diffcoexp::exprs.2
    exprs.2
    csv| json| rda| rds
    matrix|400 x 12
  2028. diffGeneAnalysis::rawdata
    Micro array dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2382 x 8
  2029. diffuStats::graph_toy
    Toy graph to play with diffusion
    rda| rds
    igraph
  2030. diffUTR::example_bin_se
    Example bin-level 'RangedSummarizedExperiment'
    rda| rds
    RangedSummarizedExperiment
  2031. diffUTR::example_gene_annotation
    Example gene annotation
    rda| rds
    GRanges
  2032. diffUTR::rn6_PAS
    Poly-A sites compendium for Rattus Norvegicus (Rno6)
    rda| rds
    GRanges
  2033. diggitdata::gbmCNV
    Human glioblastoma TCGA copy number variation (CNV) dataset
    csv| json| rda| rds
    matrix|16128 x 0
  2034. diggitdata::gbmCNVnormal
    Human normal blood TCGA copy number variation (CNV) dataset
    csv| json| rda| rds
    matrix|20349 x 33
  2035. diggitdata::gbmExprs
    Human glioblastoma mRNA expression dataset from TCGA
    rda| rds
    ExpressionSet
  2036. diggitdata::gbmMindy
    Post-translational regulatory network for human glioblatoma
    csv| rda| rds
    regulon
  2037. diggitdata::gbmTFregulon
    Transcriptional regulatory network for human glioblatoma
    csv| rda| rds
    regulon
  2038. Dino::multimodalDat
    Plot data from simulated expression
    json| rda| rds
    list
  2039. Dino::pbmcSmall
    Subset of 500 peripheral blood mononuclear cells (PBMCs) from a healthy donor
    rda| rds
    dgCMatrix
  2040. Dino::unimodalDat
    Plot data from simulated expression
    json| rda| rds
    list
  2041. dinoR::NomeData
    NOMeseq data for WT and AdnpKO mouse ES cells
    rda| rds
    RangedSummarizedExperiment
  2042. DirichletMultinomial::bestgrp
    Data objects used for examples and the vignette
    rda| rds
    DMNGroup
  2043. DirichletMultinomial::fit
    Data objects used for examples and the vignette
    rda| rds
    list
  2044. DirichletMultinomial::xval
    Data objects used for examples and the vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|254 x 3
  2045. discordant::TCGA_Breast_miRNASeq
    Example breast miRNA-Seq count dataset.
    rda| rds
    ExpressionSet
  2046. discordant::TCGA_Breast_miRNASeq_voom
    Example breast miRNA-Seq voom-transformed count dataset.
    rda| rds
    ExpressionSet
  2047. discordant::TCGA_Breast_RNASeq
    TCGA Breast Cancer RNASeq Sample Dataset
    rda| rds
    ExpressionSet
  2048. discordant::TCGA_Breast_RNASeq_voom
    TCGA Breast Cancer RNASeq Sample Dataset
    rda| rds
    ExpressionSet
  2049. discordant::TCGA_GBM_miRNA_microarray
    TCGA Glioblastoma Multiforme miRNA Sample Dataset
    rda| rds
    ExpressionSet
  2050. discordant::TCGA_GBM_transcript_microarray
    TCGA Glioblastoma Multiforme Transcript Sample Dataset
    rda| rds
    ExpressionSet
  2051. DiscoRhythm::discoODAexclusionMatrix
    Algorithm Exclusion Matrix
    csv| json| rda| rds
    matrix|4 x 7
  2052. DiscoRhythm::discoODAid2name
    Mapping Identifiers to Full Names
    json| rda| rds
    character
  2053. distinct::Kang_subset
    Subset from the 'Kang18_8vs8()' object of the 'muscData' package.
    rda| rds
    SingleCellExperiment
  2054. distinct::res
    Results from 'distinct_test' function
    csv| xlsx| json| ndjson| rda| rds
    data.frame|800 x 6
  2055. dittoSeq::demuxlet.example
    demuxlet.example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80 x 7
  2056. divergence::breastTCGA_ER
    ER positive or negative status of breast tumor samples
    json| rda| rds
    factor
  2057. divergence::breastTCGA_Group
    Normal or Tumor status of breast samples
    json| rda| rds
    factor
  2058. divergence::breastTCGA_Mat
    Gene expression for 260 genes in 887 breast samples
    csv| json| rda| rds
    matrix|260 x 887
  2059. divergence::msigdb_Hallmarks
    Cancer Hallmark gene sets from the MSigDB collection
    json| rda| rds
    list
  2060. dks::P
    Simulated null p-values from the uniform distribution.
    csv| json| rda| rds
    matrix|200 x 0
  2061. DLBCL::dataLym
    Additional data for the lymphoma microarray chip (exprLym)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3583 x 8
  2062. DLBCL::exprLym
    Expression set diffuse large B-cell lymphomas
    rda| rds
    ExpressionSet
  2063. DLBCL::interactome
    Human protein-protein interaction network
    rda| rds
    graphNEL
  2064. DMRcaller::DMRsNoiseFilterCG
    The DMRs between WT and met1-3 in CG context
    rda| rds
    GRanges
  2065. DMRcaller::GEs
    The genetic elements data
    rda| rds
    GRanges
  2066. DMRcaller::GEs_hg38
    The genetic elements data of GRCh38 Genome Reference
    rda| rds
    GRanges
  2067. DMRcaller::methylationDataList
    The methylation data list
    rda| rds
    CompressedGRangesList
  2068. DMRcaller::ont_gr_GM18870_chr1_PMD_bins_1k
    Partially Methilated Domains example
    rda| rds
    GRanges
  2069. DMRcaller::ont_gr_GM18870_chr1_sorted_bins_1k
    The ONT methylation data example
    rda| rds
    GRanges
  2070. DMRcaller::ontSampleGRangesList
    The ONT methylation data list
    rda| rds
    CompressedGRangesList
  2071. DMRcaller::PMDsBinsCG
    The PMDs between GM18501 and GM18876 using Bins method
    rda| rds
    GRanges
  2072. DMRcaller::PMDsNoiseFilterCG
    The PMDs between GM18501 and GM18876 using Noise_filter method
    rda| rds
    GRanges
  2073. DMRcaller::syntheticDataReplicates
    Simulated data for biological replicates
    rda| rds
    GRanges
  2074. DMRScan::DMRScan.methylationData
    DMRScan
    csv| json| rda| rds
    matrix|25139 x 100
  2075. DMRScan::DMRScan.phenotypes
    DMRScan
    json| rda| rds
    integer
  2076. dmrseq::annot.chr21
    annot.chr21: Annotation information for chromosome 21, hg38 genome
    rda| rds
    SimpleGRangesList
  2077. dmrseq::BS.chr21
    BS.chr21: Whole-genome bisulfite sequencing for chromosome 21 from Lister et al.
    rda| rds
    BSseq
  2078. dmrseq::dmrs.ex
    dmrs.ex: Example results of DMRs
    rda| rds
    GRanges
  2079. DNABarcodeCompatibility::IlluminaIndexes
    Barcode dataset from Illumina with features.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 4
  2080. DNABarcodeCompatibility::IlluminaIndexesRaw
    Barcode dataset from Illumina.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 2
  2081. DNABarcodes::mutatedReads
    Mock Set of Mutated Reads
    json| rda| rds
    character
  2082. DNABarcodes::supplierSet
    Mock Set of DNA Barcodes
    json| rda| rds
    character
  2083. DNAcopy::coriell
    Array CGH data set of Coriell cell lines
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 5
  2084. DNAcopy::cytoBand
    Cytogenic band data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  2085. DNAcopy::default.DNAcopy.bdry
    Sequential stopping boundary
    json| rda| rds
    integer
  2086. DNEA::dnw
    Example results for DNEA
    rda| rds
    DNEA
  2087. DNEA::metab_data
    Feature meta data for the The Environmental Determinants of Diabetes in the Young (TEDDY) clinical trial
    csv| xlsx| json| ndjson| rda| rds
    data.frame|134 x 3
  2088. DNEA::T1Dmeta
    Sample meta data for the The Environmental Determinants of Diabetes in the Young (TEDDY) clinical trial
    csv| xlsx| json| ndjson| rda| rds
    data.frame|322 x 7
  2089. DNEA::TEDDY
    Example expresion data set from The Environmental Determinants of Diabetes in the Young (TEDDY) clinical trial
    csv| json| rda| rds
    matrix|134 x 322
  2090. dominatRData::atac_tissue_counts
    ATAC-Seq rawcounts for POL3 Genes Dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9817 x 26
  2091. dominatRData::atac_tissue_score
    ATAC-Seq Score for POL3 Genes Dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9817 x 26
  2092. dominatRData::rnapol_counts
    RNA Polymerase raw counts dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|856 x 7
  2093. dominatRData::rnapol_score
    RNA Polymerase score dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|906 x 7
  2094. DominoEffect::DominoData
    Sample data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20300 x 5
  2095. DominoEffect::SnpData
    Sample data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|423 x 3
  2096. DominoEffect::TestData
    Sample data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1820 x 8
  2097. dominoSignal::CellPhoneDB
    CellPhoneDB subset
    json| rda| rds
    list
  2098. dominoSignal::PBMC
    PBMC RNAseq data subset
    rda| rds
    list
  2099. dominoSignal::SCENIC
    SCENIC AUC subset
    json| rda| rds
    list
  2100. DonaPLLP2013::statsTable
    Table of ratios
    csv| xlsx| json| ndjson| rda| rds
    data.frame|216 x 2
  2101. dorothea::dorothea_hs
    Human DoRothEA
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|454504 x 4
  2102. dorothea::dorothea_hs_pancancer
    Human DoRothEA (pancancer)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|213230 x 4
  2103. dorothea::dorothea_mm
    Mouse DoRothEA
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|386758 x 4
  2104. dorothea::dorothea_mm_pancancer
    Mouse DoRothEA (pancancer)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|187931 x 4
  2105. dorothea::entire_database
    Entire database with associated meta data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1019220 x 13
  2106. Doscheda::doschedaData
    Peptide Intensity data set for Doscheda
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21140 x 15
  2107. Doscheda::processedExample
    Processed Peptide Intensity data set for Doscheda
    rda| rds
    ChemoProtSet
  2108. DOSE::geneList
    Datasets
    json| rda| rds
    numeric
  2109. doseR::hmel.dat
    Hmel data set
    json| rda| rds
    list
  2110. doseR::se
    Hmel data set
    rda| rds
    SummarizedExperiment
  2111. doubletrouble::cds_scerevisiae
    Coding sequences (CDS) of S. cerevisiae
    rda| rds
    DNAStringSet
  2112. doubletrouble::diamond_inter
    Interspecies DIAMOND output for yeast species
    csv| json| rda| rds
    list
  2113. doubletrouble::diamond_intra
    Intraspecies DIAMOND output for S. cerevisiae
    csv| json| rda| rds
    list
  2114. doubletrouble::fungi_kaks
    Duplicate pairs and Ka, Ks, and Ka/Ks values for fungi species
    json| rda| rds
    list
  2115. doubletrouble::gmax_ks
    Duplicate pairs and Ks values for Glycine max
    csv| xlsx| json| ndjson| rda| rds
    data.frame|68463 x 4
  2116. doubletrouble::yeast_annot
    Genome annotation of the yeast species S. cerevisiae and C. glabrata
    rda| rds
    CompressedGRangesList
  2117. doubletrouble::yeast_seq
    Protein sequences of the yeast species S. cerevisiae and C. glabrata
    rda| rds
    list
  2118. drawProteins::five_rel_data
    Dataframe features of 5 human NFkappaB proteins Uniprot on 1 Nov 2017
    csv| xlsx| json| ndjson| rda| rds
    data.frame|320 x 9
  2119. drawProteins::five_rel_list
    Features of five human Rel A proteins
    json| rda| rds
    list
  2120. drawProteins::protein_json
    Uniprot infor human Rel A protein in JSON format
    json| rda| rds
    list
  2121. drawProteins::rel_A_features
    Features of human Rel A protein
    json| rda| rds
    list
  2122. drawProteins::rel_json
    Human Rel A protein features in JSON format
    json| rda| rds
    list
  2123. drawProteins::tnfs_data
    Dataframe features of 2 human TNF receptors from Uniprot on 3 Jan 2018
    csv| xlsx| json| ndjson| rda| rds
    data.frame|127 x 9
  2124. dressCheck::c119
    an N=119 expression set based on CEL files from JCO.zip
    rda| rds
    ExpressionSet
  2125. dressCheck::corrp
    Dressman's RMA+SFR corrected quantifications for 116 ovarian cancer samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22115 x 119
  2126. dressCheck::corrp116
    Dressman's RMA+SFR corrected quantifications for 116 ovarian cancer samples
    rda| rds
    ExpressionSet
  2127. dressCheck::DrAsGiven
    Quantifications of 119 ovarian cancer samples as distributed at Duke's platinum.php
    rda| rds
    ExpressionSet
  2128. dressCheck::E2F3sig.probes
    Affymetrix probe identifiers for the E2F3 pathway signature of Bild et al.
    json| rda| rds
    character
  2129. dressCheck::e2f3Wts
    Coefficients to weight components of E2F3 pathway to score for activity, derived from SVD applied to Bild's data
    json| rda| rds
    numeric
  2130. dressCheck::platsigprobes
    affymetrix probe identifiers for the platinum responsiveness signature
    json| rda| rds
    character
  2131. dressCheck::pwLines
    A representation of Bild's HMEC lines for pathway signature identification
    rda| rds
    ExpressionSet
  2132. dressCheck::Src.probes
    Affymetrix probe identifiers for the Src pathway signature of Bild et al.
    json| rda| rds
    character
  2133. dressCheck::srcWts
    Coefficients to weight components of Src pathway to score for activity, derived from SVD applied to Bild's data
    json| rda| rds
    numeric
  2134. DriverNet::sampleDriversList
    Sample DriverNet result
    rda| rds
    DriverNetResult
  2135. DriverNet::sampleGeneNames
    Sample gene names
    json| rda| rds
    factor
  2136. DriverNet::sampleInfluenceGraph
    Sample influence graph
    csv| json| rda| rds
    matrix|1255 x 1255
  2137. DriverNet::samplePatientExpressionMatrix
    Sample patient expression matrix
    csv| json| rda| rds
    matrix|200 x 1255
  2138. DriverNet::samplePatientMutationMatrix
    Sample patient mutation matrix
    csv| json| rda| rds
    matrix|120 x 1255
  2139. DriverNet::samplePatientOutlierMatrix
    Sample patient outlier matrix
    csv| json| rda| rds
    matrix|200 x 1255
  2140. DriverNet::sampleRandomDriversResult
    Sample Result from computeRandomizedResult
    json| rda| rds
    list
  2141. DrugVsDisease::customClust
    Custom Clusters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56 x 2
  2142. DrugVsDisease::customDB
    Custom Gene Expression Profiles
    csv| json| rda| rds
    matrix|11863 x 56
  2143. DrugVsDisease::customedge
    Edge attributes for example custom network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56 x 5
  2144. DrugVsDisease::customsif
    SIF file for custom clusters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56 x 3
  2145. DrugVsDisease::profiles
    Gene Expression Profiles
    csv| json| rda| rds
    list
  2146. DrugVsDisease::selprofile
    List: Differential gene expression and p-values
    csv| json| rda| rds
    list
  2147. DrugVsDiseasedata::annotationlist
    Annotation List Matrix
    csv| json| rda| rds
    matrix|3 x 0
  2148. DrugVsDiseasedata::cytodisease
    Cytodisease data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|51 x 4
  2149. DrugVsDiseasedata::diseaseClusters
    Disease Clusters Matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45 x 2
  2150. DrugVsDiseasedata::diseaselabels
    Disease experiment names map to MeSH queries
    csv| json| rda| rds
    matrix|45 x 0
  2151. DrugVsDiseasedata::diseaseRL
    Disease Ranked List Matrix
    csv| json| rda| rds
    matrix|11709 x 45
  2152. DrugVsDiseasedata::genelist
    Gene List Vector
    json| rda| rds
    character
  2153. DrugVsDiseasedata::GEOfactorvalues
    GEO Factor Values vector
    json| rda| rds
    character
  2154. DspikeIn::AcceptableRange
    Acceptable Range Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|113631 x 10
  2155. DspikeIn::metadata_full
    Metadata for Microbiome Samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|312 x 46
  2156. DspikeIn::physeq
    Example Phyloseq Object with Tree and Reference Sequences
    rda| rds
    phyloseq
  2157. DspikeIn::physeq_16SOTU
    Example Phyloseq Object for 16S OTUs
    rda| rds
    phyloseq
  2158. DspikeIn::physeq_ITSOTU
    Example Phyloseq Object for ITS OTUs
    rda| rds
    phyloseq
  2159. DspikeIn::tse
    Example TreeSummarizedExperiment (TSE) Object with Tree and Reference Sequences
    rda| rds
    TreeSummarizedExperiment
  2160. DSS::design
    Experimental design for the example RRBS dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 2
  2161. DSS::RRBS
    An example dataset for multiple factor design
    rda| rds
    BSseq
  2162. DSS::seqData
    A simulated 'SeqCountData' object.
    rda| rds
    SeqCountSet
  2163. dStruct::lai2019
    _Saccharomyces cerevisiae_ Structure-seq data
    csv| json| rda| rds
    list
  2164. dStruct::wan2014
    _Homo sapiens_ PARS data
    csv| json| rda| rds
    list
  2165. DTA::Dm.tnumber
    The amount of thymines in the cDNA of each transcript of Drosophila Melanogaster.
    json| rda| rds
    integer
  2166. DTA::Hs.datamat
    Gene expression profiles of the Homo Sapiens DTA experiment from Doelken et al.
    csv| json| rda| rds
    matrix|19791 x 9
  2167. DTA::Hs.enst2ensg
    Mapping of Homo Sapiens gene and transcript identifiers.
    json| rda| rds
    character
  2168. DTA::Hs.phenomat
    Design of the Homo Sapiens DTA experiment from Doelken et al.
    csv| json| rda| rds
    matrix|9 x 5
  2169. DTA::Hs.reliable
    Gene identifiers valid for parameter estimation from the Homo Sapiens Doelken et al. DTA experiment.
    json| rda| rds
    character
  2170. DTA::Hs.tnumber
    The amount of thymines in the cDNA of each transcript of Homo Sapiens.
    json| rda| rds
    integer
  2171. DTA::Hs.tnumber
    The amount of thymines in the cDNA of each transcript of Homo Sapiens.
    json| rda| rds
    integer
  2172. DTA::Mm.datamat
    Gene expression profiles of the Mus Musculus DTA experiment from Doelken et al.
    csv| json| rda| rds
    matrix|16747 x 9
  2173. DTA::Mm.enst2ensg
    Mapping of Mus Musculus gene and transcript identifiers.
    json| rda| rds
    character
  2174. DTA::Mm.phenomat
    Design of the Mus Musculus DTA experiment from Doelken et al.
    csv| json| rda| rds
    matrix|9 x 5
  2175. DTA::Mm.reliable
    Gene identifiers valid for parameter estimation from the Mus Musculus Doelken et al. DTA experiment.
    json| rda| rds
    character
  2176. DTA::Mm.tnumber
    The amount of thymines in the cDNA of each transcript of Mus Musculus.
    json| rda| rds
    integer
  2177. DTA::Mm.tnumber
    The amount of thymines in the cDNA of each transcript of Mus Musculus.
    json| rda| rds
    integer
  2178. DTA::Pol.phenomat
    Design of the Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) cDTA experiment from Sun et al.
    csv| json| rda| rds
    matrix|4 x 14
  2179. DTA::Raw.datamat
    Gene expression profiles of the Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and wild-type cDTA experiment from Sun et al.
    csv| json| rda| rds
    matrix|10849 x 8
  2180. DTA::Sc.affy2ensg
    Mapping of SaccharomycesCerevisiae Affymetrix Yeast 2.0 and gene identifiers.
    json| rda| rds
    character
  2181. DTA::Sc.datamat
    Gene expression profiles of the Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al.
    csv| json| rda| rds
    matrix|5976 x 12
  2182. DTA::Sc.datamat.dynamic
    Gene expression profiles of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.
    csv| json| rda| rds
    matrix|5976 x 24
  2183. DTA::Sc.ensg.reliable
    Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Sun et al. cDTA experiment.
    json| rda| rds
    character
  2184. DTA::Sc.phenomat
    Design of the Saccharomyces Cerevisiae wild-type DTA experiment from Miller et al.
    csv| json| rda| rds
    matrix|12 x 4
  2185. DTA::Sc.phenomat.dynamic
    Design of the Saccharomyces Cerevisiae salt stress DTA experiment from Miller et al.
    csv| json| rda| rds
    matrix|24 x 11
  2186. DTA::Sc.reliable
    Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Miller et al. wild-type DTA experiment.
    json| rda| rds
    character
  2187. DTA::Sc.reliable.dynamic
    Gene identifiers valid for parameter estimation from the Saccharomyces Cerevisiae Miller et al. salt stress DTA experiment.
    json| rda| rds
    character
  2188. DTA::Sc.ribig.ensg
    Ribosome biogenesis genes.
    json| rda| rds
    character
  2189. DTA::Sc.rpg.ensg
    Ribosomal protein genes.
    json| rda| rds
    character
  2190. DTA::Sc.stress.ensg
    ISA stress module.
    json| rda| rds
    character
  2191. DTA::Sc.tf.ensg
    Transcription factors.
    json| rda| rds
    character
  2192. DTA::Sc.tnumber
    The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
    json| rda| rds
    integer
  2193. DTA::Sc.tnumber
    The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
    json| rda| rds
    integer
  2194. DTA::Sc.tnumber
    The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
    json| rda| rds
    integer
  2195. DTA::Sc.tnumber
    The amount of thymines in the cDNA of each transcript of Saccharomyces Cerevisiae.
    json| rda| rds
    integer
  2196. DTA::Sp.affy.reliable
    Gene identifiers valid for cDTA normalization from the Saccharomyces Cerevisiae Sun et al. cDTA experiment.
    json| rda| rds
    character
  2197. DTA::Sp.tnumber
    The amount of thymines in the cDNA of each transcript of Schizosaccharomyces Pombe.
    json| rda| rds
    integer
  2198. DTA::Wt.phenomat
    Design of the Saccharomyces Cerevisiae wild-type cDTA experiment from Sun et al.
    csv| json| rda| rds
    matrix|4 x 14
  2199. Dune::clusMat
    A clustering matrix used to demonstrate the ari-merging process.
    csv| json| rda| rds
    matrix|100 x 5
  2200. Dune::nuclei
    Cluster labels for a subset of the allen Smart-Seq nuclei dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1744 x 7
  2201. DuplexDiscovereR::RNADuplexesGeneCounts
    Gene counts on human chromosome 22, embryonic stem cells
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|1445 x 2
  2202. DuplexDiscovereR::RNADuplexesRawBed
    Chimeric reads of SPLASH converted to .bedpe fromat
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|2040 x 10
  2203. DuplexDiscovereR::RNADuplexesRawChimSTAR
    Chimeric reads of SPLASH
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|5000 x 21
  2204. DuplexDiscovereR::RNADuplexSampleClustReads
    RNA duplex reads of SPLASH, clustered and assigned to duplex groups
    rda| rds
    StrictGInteractions
  2205. DuplexDiscovereR::RNADuplexSampleDGs
    RNA duplex reads of SPLASH, clustered and collapsed to duplex groups
    rda| rds
    StrictGInteractions
  2206. DuplexDiscovereR::RNADuplexSampleGI
    RNA duplex reads of SPLASH derived from chimeric alignments
    rda| rds
    StrictGInteractions
  2207. DuplexDiscovereR::SampleGeneAnnoGR
    Gene coordinates on human chromosome 22
    rda| rds
    GRanges
  2208. DuplexDiscovereR::SampleSmallGI
    RNA duplex reads of SPLASH derived from chimeric alignments
    rda| rds
    StrictGInteractions
  2209. DuplexDiscovereR::SampleSpliceJncGR
    Gene coordinates on human chromosome 22
    rda| rds
    GRanges
  2210. dupRadar::dupRadar_examples
    Example data containing precomputed matrices for two RNASeq experiments
    json| rda| rds
    list
  2211. DvDdata::annotationlist
    Annotation List Matrix
    csv| json| rda| rds
    matrix|3 x 0
  2212. DvDdata::cytodisease
    Cytodisease data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|84 x 4
  2213. DvDdata::cytodrug
    Cytodrug data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1306 x 4
  2214. DvDdata::diseaseClusters
    Disease Clusters Matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|88 x 2
  2215. DvDdata::diseaselabels
    Disease experiment names map to MeSH queries
    csv| xlsx| json| ndjson| rda| rds
    data.frame|116 x 2
  2216. DvDdata::diseaseRL
    Disease Ranked List Matrix
    csv| json| rda| rds
    matrix|11863 x 88
  2217. DvDdata::drugClusters
    Drug Clusters Matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1309 x 2
  2218. DvDdata::druglabels
    Drug name maps to Drug Bank
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1309 x 2
  2219. DvDdata::drugRL
    Drug Ranked List Matrix
    csv| json| rda| rds
    matrix|11863 x 0
  2220. DvDdata::genelist
    Gene List Vector
    json| rda| rds
    character
  2221. DvDdata::GEOfactorvalues
    GEO Factor Values vector
    json| rda| rds
    character
  2222. dyebiasexamples::data.norm
    Example data for the dyebias package
    rda| rds
    marrayNorm
  2223. dyebiasexamples::data.raw
    Example data for the dyebias package
    rda| rds
    marrayRaw
  2224. EasyCellType::cellmarker_tissue
    Tissues in CellMarker database.
    csv| json| rda| rds
    list
  2225. EasyCellType::clustermole_tissue
    Tissues in Clustermole database.
    csv| json| rda| rds
    list
  2226. EasyCellType::gene_pbmc
    Differential expressed marker genes in 9 clusters.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2701 x 3
  2227. EasyCellType::panglao_tissue
    Tissues in Panglao database.
    csv| json| rda| rds
    list
  2228. EasyCellType::pbmc_data
    Peripheral Blood Mononuclear Cells (PBMC) data.
    rda| rds
    dgCMatrix
  2229. easyRNASeq::RobinsonDelhomme2014
    Dataset included in the package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 7
  2230. EatonEtAlChIPseq::orcAlignsRep1
    Alignments of ChIP-seq data to yeast chromosome XIV
    rda| rds
    AlignedRead
  2231. EatonEtAlChIPseq::orcAlignsRep2
    Alignments of ChIP-seq data to yeast chromosome XIV
    rda| rds
    AlignedRead
  2232. EatonEtAlChIPseq::orcPeaksRep1
    Peaks from ChIP-seq alignments to yeast chromosome XIV
    rda| rds
    GRanges
  2233. EatonEtAlChIPseq::orcPeaksRep2
    Peaks from ChIP-seq alignments to yeast chromosome XIV
    rda| rds
    GRanges
  2234. EBarrays::gould
    A dataset of class matrix
    csv| json| rda| rds
    matrix|5000 x 10
  2235. EBcoexpress::fiftyGenes
    The fiftyGenes expression matrix
    csv| json| rda| rds
    matrix|50 x 125
  2236. EBSEA::exonCounts
    Subset of Pasilla Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 7
  2237. EBSeq::GeneMat
    The simulated data for two condition gene DE analysis
    csv| json| rda| rds
    matrix|1000 x 0
  2238. EBSeq::IsoList
    The simulated data for two condition isoform DE analysis
    json| rda| rds
    list
  2239. EBSeq::IsoMultiList
    The simulated data for multiple condition isoform DE analysis
    json| rda| rds
    list
  2240. EBSeq::MultiGeneMat
    The simulated data for multiple condition gene DE analysis
    csv| json| rda| rds
    matrix|500 x 0
  2241. ecoliLeucine::ecoliLeucine
    AffyBatch instance ecoliLeucine
    rda| rds
    AffyBatch
  2242. ecolitk::ecoli.m52.genome
    Escherichia coli data
    json| rda| rds
    character
  2243. ecolitk::ecoli.operon
    Escherichia coli data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|932 x 4
  2244. ecolitk::ecoligenome.operon
    Known operon in E.coli - data.frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|548 x 4
  2245. ecolitk::ecoligenomeBNUM
    Environment for 'bnum' identifiers
    rda| rds
    environment
  2246. ecolitk::ecoligenomeBNUM2ENZYME
    Environment for 'bnum' identifiers
    rda| rds
    environment
  2247. ecolitk::ecoligenomeBNUM2GENBANK
    Environment for 'bnum' identifiers
    rda| rds
    environment
  2248. ecolitk::ecoligenomeBNUM2GENEPRODUCT
    Environment for 'bnum' identifiers
    rda| rds
    environment
  2249. ecolitk::ecoligenomeBNUM2MULTIFUN
    Environment
    rda| rds
    environment
  2250. ecolitk::ecoligenomeBNUM2STRAND
    Environment
    rda| rds
    environment
  2251. ecolitk::ecoligenomeBNUM2SYMBOL
    Environment for 'bnum' identifiers
    rda| rds
    environment
  2252. ecolitk::ecoligenomeCHRLOC
    Escherichia coli data
    rda| rds
    environment
  2253. ecolitk::ecoligenomeMULTIFUN2GO
    multiFun classification
    rda| rds
    environment
  2254. ecolitk::ecoligenomeSTRAND
    Escherichia coli data
    rda| rds
    environment
  2255. ecolitk::ecoligenomeSYMBOL
    Escherichia coli data
    rda| rds
    environment
  2256. ecolitk::ecoligenomeSYMBOL2AFFY
    Escherichia coli data
    rda| rds
    environment
  2257. ecolitk::ecoligenomeSYMBOL2BNUM
    Environment for 'bnum' identifiers
    rda| rds
    environment
  2258. ecolitk::multiFun
    multiFun classification
    rda| rds
    environment
  2259. EDASeq::yeastGC
    GC-content of _S. Cerevisiae_ genes
    json| rda| rds
    numeric
  2260. EDASeq::yeastLength
    Length of _S. Cerevisiae_ genes
    json| rda| rds
    integer
  2261. edge::endotoxin
    Gene expression dataset from Calvano et al. (2005) Nature
    json| rda| rds
    list
  2262. edge::gibson
    Gene expression dataset from Idaghdour et al. (2008)
    json| rda| rds
    list
  2263. edge::kidney
    Gene expression dataset from Rodwell et al. (2004)
    json| rda| rds
    list
  2264. EDIRquery::gene_chr
    Gene chromosome location
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60571 x 3
  2265. EGAD::attr.human
    Human GENCODE annotations (v22)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60483 x 10
  2266. EGAD::attr.mouse
    Mouse GENCODE annotations (M7)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46517 x 10
  2267. EGAD::biogrid
    BIOGRID v3.4.126
    csv| xlsx| json| ndjson| rda| rds
    data.frame|211506 x 2
  2268. EGAD::example_annotations
    Example of annotations
    json| rda| rds
    list
  2269. EGAD::example_binary_network
    Example of binary network
    json| rda| rds
    list
  2270. EGAD::example_coexpression
    Example of binary network
    json| rda| rds
    list
  2271. EGAD::example_neighbor_voting
    Example of binary network
    csv| json| rda| rds
    list
  2272. EGAD::genes
    Genes from BIOGRID v3.4.126
    json| rda| rds
    character
  2273. EGAD::GO.human
    GO - human
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3057074 x 4
  2274. EGAD::GO.mouse
    GO - mouse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2703601 x 4
  2275. EGAD::GO.voc
    Gene ontology vocabulary
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47357 x 3
  2276. EGAD::ortho
    Gene orthologs
    csv| json| rda| rds
    list
  2277. EGAD::pheno
    Phenocarta
    csv| xlsx| json| ndjson| rda| rds
    data.frame|142272 x 4
  2278. EGSEA::arraydata
    Example dataset for 'egsea.ma'
    json| rda| rds
    list
  2279. EGSEAdata::gsetdb.human
    GeneSetDB Human Collections
    json| rda| rds
    list
  2280. EGSEAdata::gsetdb.mouse
    GeneSetDB Mouse Collections
    json| rda| rds
    list
  2281. EGSEAdata::gsetdb.rat
    GeneSetDB Rat Collections
    json| rda| rds
    list
  2282. EGSEAdata::il13.data
    Human IL-13 dataset
    json| rda| rds
    list
  2283. EGSEAdata::il13.data.cnt
    Human IL-13 dataset - Raw Counts
    json| rda| rds
    list
  2284. EGSEAdata::il13.gsa
    EGSEA analysis results on the human IL-13 dataset
    rda| rds
    EGSEAResults
  2285. EGSEAdata::kegg.pathways
    KEGG Pathways Collections
    json| rda| rds
    list
  2286. EGSEAdata::mam.data
    Mouse mammary cell dataset
    json| rda| rds
    list
  2287. EGSEAdata::Mm.c2
    Mouse C2 MSigDB Gene Set Collections
    json| rda| rds
    list
  2288. EGSEAdata::Mm.c3
    Mouse C3 MSigDB Gene Set Collections
    json| rda| rds
    list
  2289. EGSEAdata::Mm.c4
    Mouse C4 MSigDB Gene Set Collections
    json| rda| rds
    list
  2290. EGSEAdata::Mm.c5
    Mouse C5 MSigDB Gene Set Collections
    json| rda| rds
    list
  2291. EGSEAdata::Mm.c6
    Mouse C6 MSigDB Gene Set Collections
    json| rda| rds
    list
  2292. EGSEAdata::Mm.c7
    Mouse C7 MSigDB Gene Set Collections
    json| rda| rds
    list
  2293. EGSEAdata::Mm.H
    Mouse H MSigDB Gene Set Collections
    json| rda| rds
    list
  2294. EGSEAdata::msigdb
    MSigDB Gene Set Collections
    json| rda| rds
    list
  2295. eiR::example_compounds
    Example Compounds
    json| rda| rds
    character
  2296. ELViS::ELViS_toy_run_result
    ELViS Toy Example - Run Result
    json| rda| rds
    list
  2297. ELViS::mtrx_samtools_reticulate
    ELViS Toy Example - Base-Resolution Raw Read Depth
    csv| json| rda| rds
    matrix|7906 x 120
  2298. ELViS::total_aligned_base__host_and_virus
    ELViS Toy Example - Total Aligned Base
    json| rda| rds
    numeric
  2299. ELViS::toy_example
    ELViS Toy Example - Metadata
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|120 x 6
  2300. EMMA::de_res_IFNg_vs_naive
    A sample 'data.frame' containing Differential Expression Analysis, generated with 'DESeq2'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 6
  2301. EMMA::fea_res
    A sample 'list' containing Functional Enrichment Analysis results, generated with 'gprofiler2'
    json| rda| rds
    list
  2302. EMMA::gene_universe
    A sample character vector containing the background gene list used to perform FEA on the 'macrophage' dataset
    json| rda| rds
    character
  2303. EmpiricalBrownsMethod::allPvals
    Data used in tests and examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46 x 2
  2304. EmpiricalBrownsMethod::dat
    Data used in tests and examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46 x 168
  2305. EmpiricalBrownsMethod::pathways
    Data used in tests and examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46 x 2
  2306. EmpiricalBrownsMethod::randData
    Data used in tests and examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 26
  2307. EMTscore::cell_annotation_file
    Cell-line annotation table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|118 x 3
  2308. EMTscore::data_for_plot
    Example data prepared for plotting
    csv| xlsx| json| ndjson| rda| rds
    data.frame|118 x 5
  2309. EMTscore::geneExp
    Example gene expression matrix
    csv| json| rda| rds
    matrix|544 x 120
  2310. EMTscore::GO
    Gene Ontology EMT-related gene sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 1
  2311. EMTscore::MSigDB_Hallmark
    MSigDB Hallmark gene sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 1
  2312. EMTscore::nnPCA_Result_EMT
    nnPCA_Result_EMT
    csv| xlsx| json| ndjson| rda| rds
    data.frame|120 x 1
  2313. EMTscore::nnPCA_Result_multiple
    Example multiple nnPCA results
    csv| json| rda| rds
    matrix|120 x 2
  2314. EMTscore::Panchy_et_al_E_signature
    Panchy et al. epithelial signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|232 x 1
  2315. EMTscore::Panchy_et_al_M_signature
    Panchy et al. mesenchymal signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|193 x 1
  2316. EMTscore::SCSE_Result_EMT
    Example SCSE EMT scores
    csv| xlsx| json| ndjson| rda| rds
    data.frame|120 x 1
  2317. EMTscore::Tan_et_al_cell_line_E_signature
    Tan et al. cell-line epithelial signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|170 x 1
  2318. EMTscore::Tan_et_al_cell_line_M_signature
    Tan et al. cell-line mesenchymal signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 1
  2319. EMTscore::Tan_et_al_tumor_E_signature
    Tan et al. tumor epithelial signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|145 x 1
  2320. EMTscore::Tan_et_al_tumor_M_signature
    Tan et al. tumor mesenchymal signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|170 x 1
  2321. enhancerHomologSearch::motifs
    Pre-clustered motifs from human and mouse
    rda| rds
    list
  2322. EnMCB::anno_matrix
    IlluminaHumanMethylation450kanno
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485512 x 5
  2323. EnMCB::demo_data
    Expression matrix of demo dataset.
    json| rda| rds
    list
  2324. EnMCB::demo_MCBinformation
    MCB information.
    csv| json| rda| rds
    matrix|94 x 8
  2325. EnMCB::demo_survival_data
    Survival data of demo dataset.
    rda| rds
    Surv|455 x 2
  2326. EnrichDO::dotermgenes
    All DO term annotated genes.
    json| rda| rds
    character
  2327. EnrichDO::doterms
    Detailed annotation information for 4831 DO terms.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4813 x 10
  2328. enrichViewNet::demoGOST
    The result of a functional enrichment analysis done with 'gprofiler2' (<https://cran.r-project.org/web/packages/gprofiler2/vignettes/gprofiler2.html>).
    json| rda| rds
    list
  2329. enrichViewNet::parentalNapaVsDMSODEG
    The result of a differential expression analysis done between napabucasin treated and DMSO control parental MiaPaCa2 cells. The cells were treated for 2 hours with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24184 x 4
  2330. enrichViewNet::parentalNapaVsDMSOEnrichment
    The result of an enrichment analysis has been done using the significantly differentially expressed genes between napabucasin treated and DMSO control parental MiaPaCa2 cells. The cells were treated for 2 hour with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
    json| rda| rds
    list
  2331. enrichViewNet::rosaNapaVsDMSODEG
    The result of a differential expression analysis done between napabucasin treated and DMSO control MiaPaCa2 cells stably expressing the Rosa26 control vector. The cells were treated for 2 hours with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23542 x 4
  2332. enrichViewNet::rosaNapaVsDMSOEnrichment
    The result of an enrichment analysis that has been done using the significantly differentially expressed genes between napabucasin treated and DMSO control MiaPaCa2 cells stably expressing the Rosa26 control vector. The cells were treated for 2 hour with 0.5 uM napabucasin. The protocol to generate the RNA-seq is described in Froeling F.E.M. et al 2019.
    json| rda| rds
    list
  2333. EpiCompare::CnR_H3K27ac
    Example CUT&Run peak file
    rda| rds
    GRanges
  2334. EpiCompare::CnR_H3K27ac_picard
    Example Picard duplication metrics file 2
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 10
  2335. EpiCompare::CnT_H3K27ac
    Example CUT&Tag peak file
    rda| rds
    GRanges
  2336. EpiCompare::CnT_H3K27ac_picard
    Example Picard duplication metrics file 1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 10
  2337. EpiCompare::encode_H3K27ac
    Example ChIP-seq peak file
    rda| rds
    GRanges
  2338. EpiCompare::hg19_blacklist
    Human genome hg19 blacklisted regions
    rda| rds
    GRanges
  2339. EpiCompare::hg38_blacklist
    Human genome hg38 blacklisted regions
    rda| rds
    GRanges
  2340. EpiCompare::mm10_blacklist
    Mouse genome mm10 blacklisted regions
    rda| rds
    GRanges
  2341. EpiCompare::mm9_blacklist
    Mouse genome mm9 blacklisted regions
    rda| rds
    GRanges
  2342. EpiDISH::cent12CT.m
    Whole blood reference of 12 blood cell subtypes for EPIC array
    csv| json| rda| rds
    matrix|600 x 12
  2343. EpiDISH::cent12CT450k.m
    Whole blood reference of 12 blood cell subtypes for 450k array
    csv| json| rda| rds
    matrix|600 x 12
  2344. EpiDISH::centBloodSub.m
    Whole blood reference of 188 tsDHS-DMCs and 7 blood cell subtypes
    csv| json| rda| rds
    matrix|188 x 7
  2345. EpiDISH::centDHSbloodDMC.m
    Whole blood reference of 333 tsDHS-DMCs and 7 blood cell subtypes
    csv| json| rda| rds
    matrix|333 x 7
  2346. EpiDISH::centEpiFibFatIC.m
    Reference for breast tissue
    csv| json| rda| rds
    matrix|491 x 4
  2347. EpiDISH::centEpiFibIC.m
    Reference for genenric epithelial tissue
    csv| json| rda| rds
    matrix|716 x 3
  2348. EpiDISH::centUniLIFE.m
    DNAm reference matrix for 19 immune cell-types for blood of any age
    csv| json| rda| rds
    matrix|1906 x 19
  2349. EpiDISH::DummyBeta.m
    Dummy beta value matrix
    csv| json| rda| rds
    matrix|2000 x 10
  2350. EpiDISH::LiuDataSub.m
    Whole blood example beta value matrix
    csv| json| rda| rds
    matrix|500 x 50
  2351. epigenomix::eSet
    Example gene expression data set.
    rda| rds
    ExpressionSet
  2352. epigenomix::fpkm
    Example RNA-seq data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3502 x 13
  2353. epigenomix::mappedReads
    Mapped reads obtained from a anti-histone ChIP-seq experiment.
    rda| rds
    CompressedGRangesList
  2354. epigenomix::transToTSS
    A data frame with Ensemble transcript IDs and transcriptional start sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|277 x 4
  2355. epigraHMM::helas3
    ENCODE ChIP-seq broad data from Helas3 cell line
    rda| rds
    RangedSummarizedExperiment
  2356. EpiMix.data::EPIC_lncRNA_probes
    A character vector that maps CpG probes to lncRNA genes. The vectors names are genes and the values are CpG probes
    json| rda| rds
    character
  2357. EpiMix.data::EPIC_miRNA_probes
    A dataframe that maps CpG probes genes to microRNA genes. The vectors names are genes and the values are CpG probes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23907 x 4
  2358. EpiMix.data::EpigenomeMap
    A list that map epigenome groups to epigenome IDs
    json| rda| rds
    list
  2359. EpiMix.data::HM450_lncRNA_probes
    A character vector that maps CpG probes to lncRNA genes. The vectors names are genes and the values are CpG probes
    json| rda| rds
    character
  2360. EpiMix.data::HM450_miRNA_probes
    A dataframe that maps CpG probes genes to microRNA genes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17495 x 4
  2361. EpiMix.data::lncRNA.data
    Toy lncRNA expression dataset for demonstration purpose.
    csv| json| rda| rds
    matrix|2 x 0
  2362. EpiMix.data::LUAD.sample.annotation
    toy dataset for sample annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|489 x 2
  2363. EpiMix.data::MET.data
    Toy DNA methylation dataset for demonstration purpose.
    csv| json| rda| rds
    matrix|18 x 0
  2364. EpiMix.data::microRNA.data
    Toy microRNA expression dataset for demonstration purpose.
    csv| json| rda| rds
    matrix|3 x 0
  2365. EpiMix.data::mRNA.data
    Toy gene expression dataset for demonstration purpose.
    csv| json| rda| rds
    matrix|1011 x 0
  2366. EpiMix.data::Sample_EpiMixResults_Enhancer
    toy dataset for EpiMix output with Enhancer mode
    json| rda| rds
    list
  2367. EpiMix.data::Sample_EpiMixResults_lncRNA
    toy dataset for EpiMix output with lncRNA mode
    json| rda| rds
    list
  2368. EpiMix.data::Sample_EpiMixResults_miRNA
    toy dataset for EpiMix output with miRNA mode
    json| rda| rds
    list
  2369. EpiMix.data::Sample_EpiMixResults_Regular
    toy dataset for EpiMix output with Regular mode
    json| rda| rds
    list
  2370. EpiMix.data::TCGA_BatchData
    A dataframe with the batch information of TCGA patient.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23263 x 2
  2371. epimutacions::GRset
    GRset
    rda| rds
    GenomicRatioSet
  2372. epimutacions::res.epi.manova
    res.epi.manova
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 16
  2373. epiNEM::sameith_GO
    graph-based GO similarity scores, string GO annotations for Sameith et al., 2015 data
    json| rda| rds
    list
  2374. epiNEM::sameith_string
    sig. of string interaction scores for Sameith et al., 2015 data
    json| rda| rds
    list
  2375. epiNEM::samscreen
    Example data: epiNEM results for the Sameith et al., 2015 knock-out screen
    rda| rds
    epiScreen
  2376. epiNEM::sim
    Example data: simulation results
    rda| rds
    epiSim
  2377. epiNEM::wageningen_GO
    graph-based GO similarity scores, string GO annotations for van Wageningen et al., 2015 data
    json| rda| rds
    list
  2378. epiNEM::wageningen_string
    sig. of string interaction scores for van Wageningen et al., 2010 data
    json| rda| rds
    list
  2379. epiNEM::wagscreen
    Example data: epiNEM results for the Wageningen et al., 2010 knock-out screen "http://www.holstegelab.nl/publications/GSTF_geneticinteractions/ downloads/del_mutants_limma.txt"
    rda| rds
    epiScreen
  2380. epiregulon.extra::regulon
    regulon created using 'epiregulon' package from reprogram-seq data
    rda| rds
    DFrame
  2381. epiSeeker::demo_bmdata
    demo base modification data
    rda| rds
    bmData
  2382. epiSeeker::demo_peak
    demo peak file
    rda| rds
    GRanges
  2383. epiSeeker::gsminfo
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|103398 x 14
  2384. epiSeeker::peakAnno
    Example data of peak annotation
    rda| rds
    csAnno
  2385. epiSeeker::peakAnnoList
    Example data of a list of peak annotation
    rda| rds
    list
  2386. epiSeeker::pwm_obj
    motif reference for Homo sapiens
    rda| rds
    PFMatrixList
  2387. epiSeeker::seq2gene_result
    Result of seq2gene
    json| rda| rds
    character
  2388. epiSeeker::tagMatrix
    Example data of tagMatrix
    csv| json| rda| rds
    matrix|664 x 0
  2389. epiSeeker::ucsc_release
    Information Datasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|112 x 4
  2390. epistack::stackepi
    epistack example and test dataset
    rda| rds
    RangedSummarizedExperiment
  2391. epistack::stackepi_gr
    epistack backward compatibility dataset
    rda| rds
    GRanges
  2392. epistasisGA::case
    Genotypes for the affected children of case-parent triads.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 100
  2393. epistasisGA::case.gxe
    Genotypes for the cases of case-parent triads with a simulated gene environment interaction.
    csv| json| rda| rds
    matrix|1000 x 24
  2394. epistasisGA::case.mci
    Genotypes for the affected cases of case-parent triads with a simulated maternal-fetal interaction.
    csv| json| rda| rds
    matrix|1000 x 24
  2395. epistasisGA::dad
    Genotypes for the fathers of case-parent triads.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 100
  2396. epistasisGA::dad.gxe
    Genotypes for the fathers of case-parent triads with a simulated gene environment interaction.
    csv| json| rda| rds
    matrix|1000 x 24
  2397. epistasisGA::dad.mci
    Genotypes for the fathers of case-parent triads with a simulated maternal-fetal interaction.
    csv| json| rda| rds
    matrix|1000 x 24
  2398. epistasisGA::exposure
    Exposures for the cases of case-parent triads with a simulated gene environment interaction.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 1
  2399. epistasisGA::mom
    Genotypes for the mothers of case-parent triads.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 100
  2400. epistasisGA::mom.gxe
    Genotypes for the mothers of case-parent triads with a simulated gene environment interaction.
    csv| json| rda| rds
    matrix|1000 x 24
  2401. epistasisGA::mom.mci
    Genotypes for the mothers of case-parent triads with a simulated maternal-fetal interaction.
    csv| json| rda| rds
    matrix|1000 x 24
  2402. epistasisGA::snp.annotations
    RSID, REF, and ALT annotations for example dataset SNPs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 3
  2403. epistasisGA::snp.annotations.mci
    RSID, REF, and ALT annotations for example dataset SNPs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  2404. EpiTxDb::rmbase_data
    EpiTxDb internal data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38 x 6
  2405. epivizr::tcga_colon_blocks
    Example methylation data (blocks) for epivizr vignette.
    rda| rds
    GRanges
  2406. epivizr::tcga_colon_curves
    Example methylation data (smoothed methylation levels) for epivizr vignette
    rda| rds
    GRanges
  2407. epivizr::tcga_colon_expression
    Example exon-level RNAseq data from TCGA project for epivizr vignette.
    rda| rds
    RangedSummarizedExperiment
  2408. epivizrChart::bcode_eset
    Example expression data from the Gene Expression barcode project
    rda| rds
    ExpressionSet
  2409. epivizrChart::cgi_gr
    Locations of CpG Islands
    rda| rds
    GRanges
  2410. epivizrChart::sumexp
    Example SummarizedExperiment for epivizr vignette
    rda| rds
    RangedSummarizedExperiment
  2411. epivizrChart::tcga_colon_blocks
    Example methylation data (blocks) for epivizr vignette.
    rda| rds
    GRanges
  2412. epivizrChart::tcga_colon_curves
    Example methylation data (smoothed methylation levels) for epivizr vignette
    rda| rds
    GRanges
  2413. epivizrChart::tcga_colon_expression
    Example exon-level RNAseq data from TCGA project for epivizr vignette.
    rda| rds
    RangedSummarizedExperiment
  2414. erccdashboard::ERCCDef
    ERCCDef dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 3
  2415. erccdashboard::ERCCMix1and2
    ERCCMix1and2 dataframe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 4
  2416. erccdashboard::MET.CTL.countDat
    Rat toxicogenomics count data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16590 x 7
  2417. erccdashboard::MET.CTL.totalReads
    Rat toxicogenomics total read data
    json| rda| rds
    integer
  2418. erccdashboard::UHRR.HBRR.arrayDat
    UHRR and HBRR Illumina BeadArray data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17627 x 7
  2419. erccdashboard::UHRR.HBRR.countDat
    UHRR and HBRR RNA-Seq Illumina count data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43919 x 9
  2420. erccdashboard::UHRR.HBRR.totalReads
    UHRR and HBRR sample total read data
    json| rda| rds
    integer
  2421. ERSSA::combinations.partial
    Example list of combinations generated by comb_gen function.
    json| rda| rds
    list
  2422. ERSSA::condition_table.full
    Example table of sample names and conditions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 2
  2423. ERSSA::condition_table.partial
    Example table of sample names and conditions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 2
  2424. ERSSA::count_table.filtered.partial
    Example count table of GTEx RNA-seq experiment, fitered by count_filter function
    csv| xlsx| json| ndjson| rda| rds
    data.frame|974 x 8
  2425. ERSSA::count_table.full
    Example count table of GTEx RNA-seq experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|58037 x 20
  2426. ERSSA::count_table.partial
    Example count table of GTEx RNA-seq experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 8
  2427. ERSSA::deg.partial
    Example list of DE genes generated by edgeR
    json| rda| rds
    list
  2428. escape::escape.gene.sets
    Built-In Gene Sets for escape
    json| rda| rds
    list
  2429. etec16s::etec16s
    Curated dataset of many healthy and moderate-to-severe diarretic gut 16s samples on the 454 FLEX platform.
    rda| rds
    MRexperiment
  2430. eudysbiome::diffGenera
    Differential microbes in Genus-Species table A data frame containing 10 differential genera and the species included, which was to be annotated as '"harmful"' or '"harmless"'.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 2
  2431. eudysbiome::harmGenera
    Manually curated genera annotation table A data frame containing 260 genera annotated as "harmful" and the harmful species included in these genera.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|900 x 3
  2432. eudysbiome::microCount
    Microbial count contingency table
    csv| json| rda| rds
    matrix|3 x 2
  2433. eudysbiome::microDiff
    Differential annotated genera with abundance variations among pair-wise condition comparisons
    json| rda| rds
    list
  2434. evaluomeR::bioMetrics
    Dataset: Metrics for biological pathways
    rda| rds
    SummarizedExperiment
  2435. evaluomeR::ontMetrics
    Dataset: Structural ontology metrics
    rda| rds
    SummarizedExperiment
  2436. evaluomeR::rnaMetrics
    Dataset: RNA quality metrics
    rda| rds
    SummarizedExperiment
  2437. EventPointer::AllEvents_RNASeq
    Alternative splicing events detected by EventPointer
    json| rda| rds
    list
  2438. EventPointer::AllEvents_RNASeq_MP
    Alternative splicing multi-path events detected by EventPointer
    json| rda| rds
    list
  2439. EventPointer::ArrayDatamultipath
    Preprocessed arrays data with multi-path events
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52 x 9
  2440. EventPointer::ArraysData
    Preprocessed arrays data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 9
  2441. EventPointer::EventXtrans
    Relationship between isoforms and events.
    rda| rds
    list
  2442. EventPointer::Fit
    Result of EventPointer_Bootstrap
    rda| rds
    list
  2443. EventPointer::MyPrimers
    Data frame with primers design for conventional PCR
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 12
  2444. EventPointer::MyPrimers_taqman
    Data frame with primers design for taqman PCR
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 15
  2445. EventPointer::PSI_boots
    Bootstrap PSI values from BAM files
    json| rda| rds
    array
  2446. EventPointer::PSIss
    relationship between isoforms and events
    json| rda| rds
    list
  2447. EventPointer::SG_reclassify
    Splicing graph example for Events_ReClassification function
    rda| rds
    list
  2448. EventPointer::SG_RNASeq
    Splicing graph elements predicted from BAM files
    rda| rds
    SGFeatureCounts
  2449. EventPointer::TxD
    Transcript x Protein Domain matrix: small matrix for examples
    rda| rds
    dgCMatrix
  2450. ExiMiR::galenv
    R annotation environment for GEO series GSE20122
    rda| rds
    environment
  2451. ExiMiR::GSE19183
    Affybatch object for the raw data from GEO series GSE19183
    rda| rds
    AffyBatch
  2452. ExiMiR::GSE20122
    Affybatch object for the raw data from GEO series GSE20122
    rda| rds
    AffyBatch
  2453. ExpHunterSuite::degh_output
    Output data from the main_degenes_Hunter function
    rda| rds
    list
  2454. ExpHunterSuite::target
    Target data containing sample information for the toc data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 2
  2455. ExpHunterSuite::toc
    Table of counts dummy dataset for DEgeneHunter examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|530 x 7
  2456. exploreSE::baseline
    DE results for airway - baseline
    rda| rds
    DESeqResults
  2457. exploreSE::baseline_down_go
    Example GO enrichments for the baseline model
    rda| rds
    enrichResult
  2458. exploreSE::baseline_up_go
    Example GO enrichments for the baseline model
    rda| rds
    enrichResult
  2459. exploreSE::cell_controlled
    DE results for airway - cell-controlled
    rda| rds
    DESeqResults
  2460. exploreSE::controlled_down_go
    Example GO enrichments for the cell_controlled model
    rda| rds
    enrichResult
  2461. exploreSE::controlled_up_go
    Example GO enrichments for the cell controlled model
    rda| rds
    enrichResult
  2462. ExpressionAtlas::allExps
    A SimpleList containing some dummy Expression Atlas datasets
    rda| rds
    SimpleList
  2463. ExpressionAtlas::atlasRes
    A DataFrame listing some Expression Atlas experiments
    rda| rds
    DFrame
  2464. ExpressionAtlas::rnaseqExps
    A SimpleList containing a dummy RNA-seq Expression Atlas dataset
    rda| rds
    SimpleList
  2465. extraChIPs::ex_genes
    Datasets for an example region
    rda| rds
    GRanges
  2466. extraChIPs::ex_hic
    Datasets for an example region
    rda| rds
    GInteractions
  2467. extraChIPs::ex_prom
    Datasets for an example region
    rda| rds
    GRanges
  2468. extraChIPs::ex_trans
    Datasets for an example region
    rda| rds
    GRanges
  2469. extraChIPs::grch37.cytobands
    Cytogenetic bands
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  2470. extraChIPs::grch38.cytobands
    Cytogenetic bands
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  2471. extraChIPs::peaks
    Datasets for the Fixed-Width Vignette
    rda| rds
    CompressedGRangesList
  2472. extraChIPs::se
    Datasets for the Fixed-Width Vignette
    rda| rds
    RangedSummarizedExperiment
  2473. faahKO::faahko
    FAAH knockout LC/MS data xcmsSet
    rda| rds
    xcmsSet
  2474. faahKO::faahko3
    FAAH knockout LC/MS data XCMSnExp
    rda| rds
    XCMSnExp
  2475. fabiaData::CBreast
    Subclasses of van't Veer breast cancer microarray data set
    json| rda| rds
    numeric
  2476. fabiaData::CDLBCL
    Microarray data set of Rosenwald diffuse large-B-cell lymphoma
    json| rda| rds
    numeric
  2477. fabiaData::CMulti
    Microarray data set of Su on different mammalian tissue types
    json| rda| rds
    numeric
  2478. fabiaData::XBreast
    Subclasses of van't Veer breast cancer microarray data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1213 x 97
  2479. fabiaData::XDLBCL
    Microarray data set of Rosenwald diffuse large-B-cell lymphoma
    csv| xlsx| json| ndjson| rda| rds
    data.frame|661 x 180
  2480. fabiaData::XMulti
    Microarray data set of Su on different mammalian tissue types
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5565 x 102
  2481. factDesign::estrogen
    Microarray Data from an Experiment on Breast Cancer Cells
    rda| rds
    ExpressionSet
  2482. factR::chrom_matched_query_gtf
    Chromosome matched version of "query_gtf"
    rda| rds
    GRanges
  2483. factR::domains.known
    Example output of predictDomains()
    csv| xlsx| json| ndjson| rda| rds
    data.frame|85780 x 5
  2484. factR::domains.out
    Example output of predictDomains()
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14880 x 5
  2485. factR::matched_query_gtf
    Seqlevels and gene_id matched query data
    rda| rds
    GRanges
  2486. factR::new_query_gtf
    Query data containing CDS information
    rda| rds
    GRanges
  2487. factR::query_cds
    CDS from 4 transcripts entries of the same gene
    rda| rds
    CompressedGRangesList
  2488. factR::query_exons
    GRangeList of exons from 4 transcripts entries from query_gtf
    rda| rds
    CompressedGRangesList
  2489. factR::query_gtf
    Imported GTF file containing 4 transcript entries of the same gene
    rda| rds
    GRanges
  2490. factR::ref_cds
    CDS from 2 reference transcripts entries of the same gene
    rda| rds
    CompressedGRangesList
  2491. factR::ref_exons
    Exons from 2 reference transcripts entries of the same gene
    rda| rds
    CompressedGRangesList
  2492. factR::ref_gtf
    Imported GTF file containing 2 reference transcript entries of the same gene
    rda| rds
    GRanges
  2493. famat::all_compounds_chebi
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5467 x 7
  2494. famat::compl_data_result
    Output of 'compl_data' function
    json| rda| rds
    list
  2495. famat::genes
    List of genes.
    json| rda| rds
    character
  2496. famat::interactions_result
    Output of 'interactions' function
    json| rda| rds
    list
  2497. famat::listk
    Pathway enrichment analysis results for KEGG pathways.
    csv| json| rda| rds
    list
  2498. famat::listr
    Pathway enrichment analysis results for Reactome pathways.
    csv| json| rda| rds
    list
  2499. famat::listw
    Pathway enrichment analysis results for Wikipathways pathways.
    csv| json| rda| rds
    list
  2500. famat::meta
    List of metabolites.
    json| rda| rds
    character
  2501. famat::MPINetData
    The variables in the environment variable 'MPINetData' of the system
    rda| rds
    environment
  2502. Fancy::fancy_tiny_clr
    Tiny example CLR-transformed abundance table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 0
  2503. Fancy::fancy_tiny_counts
    Tiny example count table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 0
  2504. Fancy::fancy_tiny_coverage
    Tiny example covered-fraction table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 0
  2505. Fancy::fancy_tiny_metadata
    Tiny example sample metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|321 x 3
  2506. Fancy::fancy_tiny_taxonomy
    Tiny example GTDB taxonomy table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 7
  2507. FANTOM3and4CAGE::FANTOMhumanSamples
    List of FANTOM CAGE samples for human
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 3
  2508. FANTOM3and4CAGE::FANTOMmouseSamples
    List of FANTOM CAGE samples for mouse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|83 x 3
  2509. FANTOM3and4CAGE::FANTOMtimecourseCAGEhuman
    Human timecourse CAGE data produced in FANTOM4 project
    csv| json| rda| rds
    list
  2510. FANTOM3and4CAGE::FANTOMtimecourseCAGEmouse
    Mouse timecourse CAGE data produced in FANTOM projects
    json| rda| rds
    list
  2511. FANTOM3and4CAGE::FANTOMtissueCAGEhuman
    CAGE data produced in FANTOM projects for various human tissues and cell lines
    json| rda| rds
    list
  2512. FANTOM3and4CAGE::FANTOMtissueCAGEmouse
    CAGE data produced in FANTOM projects for various mouse tissues and cell lines
    json| rda| rds
    list
  2513. fastLiquidAssociation::testmat
    Example results from fastMLA requiring all significance methods
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 5
  2514. fastRanges::fast_ranges_example
    Example Genomic Ranges for Documentation, Tests, and Tutorials
    rda| rds
    list
  2515. fastseg::coriell
    Array CGH data set of Coriell cell lines
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 5
  2516. fastseg::fastsegData
    Example data set for fastseg
    json| rda| rds
    numeric
  2517. fCI::fci.data
    data frame of gene expression
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1043 x 6
  2518. fCI::multi.dimensional.fci.data
    data frame of gene expression
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14204 x 8
  2519. fdrame::design
    Experimental design
    json| rda| rds
    numeric
  2520. fdrame::exp.arr
    Normalized Expression Array
    csv| json| rda| rds
    matrix|6384 x 16
  2521. FEAST::trueclass
    An example single cell dataset for the cell label information (Yan)
    json| rda| rds
    character
  2522. FEAST::Y
    An example single cell count expression matrix (Yan)
    csv| json| rda| rds
    matrix|19304 x 124
  2523. fedup::geneDouble
    Example list of a background set and two sets of test genes to use for enrichment analysis.
    json| rda| rds
    list
  2524. fedup::geneMulti
    Example list of a background set and multiple sets of test genes to use for enrichment analysis.
    json| rda| rds
    list
  2525. fedup::geneSingle
    Example list of a background set and single set of test genes to use for enrichment analysis.
    json| rda| rds
    list
  2526. fedup::pathwaysGMT
    Named list of human pathway annotations obtained from a GMT file.
    json| rda| rds
    list
  2527. fedup::pathwaysTXT
    Example list of SAFE terms obtained from a TXT file.
    json| rda| rds
    list
  2528. fedup::pathwaysXLSX
    Example list of SAFE terms obtained from a XLSX file.
    json| rda| rds
    list
  2529. FELLA::FELLA.sample
    FELLA.DATA sample data
    rda| rds
    FELLA.DATA
  2530. FELLA::input.sample
    A randomly generated list of affected metabolites
    json| rda| rds
    character
  2531. fenr::exmpl_all
    Example set of background genes.
    json| rda| rds
    character
  2532. fenr::exmpl_sel
    Example set of selected genes.
    json| rda| rds
    character
  2533. fenr::go
    GO-terms data downloaded for the vignette.
    json| rda| rds
    list
  2534. fenr::go_species
    GO species
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|171 x 7
  2535. fenr::yeast_de
    Differential expression results for yeast RNA-seq.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|6298 x 6
  2536. ffpeExampleData::lumibatch.GSE17565
    Illumina DASL expression data from FFPE tissues.
    rda| rds
    LumiBatch
  2537. fgga::CfData
    A set of characterized protein coding genes from the Cannis familiaris organism annotated to a target GO subgraph considering both experimental and electronic evidence.
    json| rda| rds
    list
  2538. FGNet::FEA_tools
    FGNet data
    csv| json| rda| rds
    matrix|5 x 7
  2539. FGNet::GOEvidenceCodes
    FGNet data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 2
  2540. FGNet::groupTypes
    FGNet data
    csv| json| rda| rds
    matrix|3 x 3
  2541. FGNet::organisms
    FGNet data
    csv| json| rda| rds
    matrix|19 x 3
  2542. fgsea::exampleExpressionMatrix
    Example of expression values obtained for GSE14308.
    csv| json| rda| rds
    matrix|10000 x 12
  2543. fgsea::examplePathways
    Example list of mouse Reactome pathways.
    json| rda| rds
    list
  2544. fgsea::exampleRanks
    Example vector of gene-level statistics obtained for Th1 polarization.
    json| rda| rds
    numeric
  2545. fibroEset::fibroEset
    Data from the microarray experiment of human, bonobo and gorilla cultured fibroblasts done by Karaman et al. (2003)
    rda| rds
    ExpressionSet
  2546. findIPs::miller05
    miller05 data
    rda| rds
    list
  2547. FindIT2::ATAC_normCount
    ATAC normCount of E50h-72h in Chr5
    csv| json| rda| rds
    matrix|5902 x 16
  2548. FindIT2::RNA_normCount
    RNA normCount of E50h-72h in Chr5
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8236 x 16
  2549. FindIT2::RNADiff_LEC2_GR
    RNA diff result from LEC2_GR VS LEC2_DMSO
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8236 x 3
  2550. FindIT2::test_featureSet
    test_featureSet
    json| rda| rds
    character
  2551. FindIT2::test_geneSet
    test_geneSet
    json| rda| rds
    character
  2552. FindIT2::TF_target_database
    TF-target database
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7549 x 2
  2553. FinfoMDS::microbiome
    Microbiome dataset
    rda| rds
    phyloseq
  2554. FIs::FIs
    Human Functional Interactions (FIs)
    json| rda| rds
    list
  2555. fishash::tapseq_diffex
    TAPseq benchmark dataset (Schraivogel et al 2020)
    rda| rds
    SingleCellExperiment
  2556. fission::fission
    Fission yeast time course
    rda| rds
    RangedSummarizedExperiment
  2557. FLAMES::scmixology_lib10
    scMixology short-read gene counts - sample 2
    rda| rds
    SingleCellExperiment
  2558. FLAMES::scmixology_lib10_transcripts
    scMixology long-read transcript counts - sample 2
    rda| rds
    SingleCellExperiment
  2559. FLAMES::scmixology_lib90
    scMixology short-read gene counts - sample 1
    rda| rds
    SingleCellExperiment
  2560. flowAI::Bcells
    flowSet of B cells.
    rda| rds
    flowSet
  2561. flowBeads::beads1
    Dako beads on day 1
    rda| rds
    BeadFlowFrame
  2562. flowBeads::beads2
    Dako beads on day 2
    rda| rds
    BeadFlowFrame
  2563. flowBeads::cytocalmef
    Cytocal config file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 11
  2564. flowBeads::dakomef
    Dako config file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 5
  2565. flowBin::aml.sample
    Multitube AML sample as example data for flowBin
    rda| rds
    FlowSample
  2566. flowcatchR::candidate.platelets
    A sample 'ParticleSet' object
    csv| rda| rds
    ParticleSet
  2567. flowcatchR::MesenteriumSubset
    A sample 'Frames' object
    rda| rds
    Frames
  2568. flowCHIC::abiotic_incol
    Dataset with abiotic data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 6
  2569. flowCHIC::Results_overlaps
    Dataset with labels and sums of informative pixels within the overlap area of the FCS files included to the package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 2
  2570. flowCHIC::Results_overlaps_incol
    Dataset with labels and sums of informative pixels within the overlap area of the second downloadable dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|136 x 2
  2571. flowCHIC::Results_overlaps_mix
    Dataset with labels and sums of informative pixels within the overlap area of the first downloadable dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4005 x 2
  2572. flowCHIC::Results_xor
    Dataset with labels and intensity values of the FCS files included to the package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 2
  2573. flowCHIC::Results_xor_incol
    Dataset with labels and intensity values of the second downloadable dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|136 x 2
  2574. flowCHIC::Results_xor_mix
    Dataset with labels and intensity values of the first downloadable dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4005 x 2
  2575. flowClean::synPerturbed
    Synthetically Perturbed FCS.
    rda| rds
    flowFrame
  2576. flowClust::rituximab
    The Rituximab Dataset
    rda| rds
    flowFrame
  2577. flowCore::GvHD
    Extract of a Graft versus Host Disease monitoring experiment (Rizzieri et al., 2007)
    rda| rds
    flowSet
  2578. flowCut::flowCutData
    A list containing two GvHD flow frames from flowCore
    rda| rds
    list
  2579. flowCyBar::Abiotic_data_sample
    Dataset with abiotic data and sample names
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 44
  2580. flowCyBar::Cell_number_sample
    Dataset with relative measured cell numbers and sample names
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 31
  2581. flowCyBar::Corr_data_sample
    Dataset with correlation data and sample names
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 44
  2582. flowFP::fs1
    Example FCS flowSet
    rda| rds
    flowSet
  2583. flowFP::fs2
    Example FCS flowSet
    rda| rds
    flowSet
  2584. flowFP::plate
    96 well plate data.
    rda| rds
    flowSet
  2585. flowGraph::fg_data_fca
    fg_data_fca
    rda| rds
    list
  2586. flowGraph::fg_data_pos2
    fg_data_pos2
    rda| rds
    list
  2587. flowGraph::fg_data_pos30
    fg_data_pos30
    rda| rds
    list
  2588. flowMeans::x
    xSample
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17640 x 6
  2589. flowMerge::flowClust.res
    A flowClust model fitted to the rituximab data for 1:10 clusters.
    rda| rds
    flowClustList
  2590. flowPeaks::barcode
    The barcode dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|180912 x 3
  2591. flowPeaks::barcode.cid
    The barcode dataset
    json| rda| rds
    integer
  2592. flowPeaks::concave
    The concave dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2729 x 2
  2593. flowPeaks::concave.cid
    The concave dataset
    json| rda| rds
    integer
  2594. flowPlots::adultsNeonates
    The adultsNeonates example data set of "stacked" data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6912 x 10
  2595. flowPlots::marginalDF
    An example of marginalData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|432 x 11
  2596. flowPlots::markerMatrix
    An example of the markers data.
    csv| json| rda| rds
    matrix|16 x 4
  2597. flowPlots::pfdDF
    An example of pfdData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|432 x 10
  2598. flowPlots::pfdPartsList
    An example of pfdPartsData
    json| rda| rds
    list
  2599. flowPlots::profileDF
    An example of profileData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|432 x 22
  2600. FlowSorted.Blood.450k::FlowSorted.Blood.450k.JaffeModelPars
    Model Parameters for Blood Cell Type Estimation
    csv| json| rda| rds
    matrix|600 x 6
  2601. FlowSorted.Blood.EPIC::IDOLOptimizedCpGs
    IDOL Optimized CpGs for adult blood DNA methylation deconvolution EPIC
    json| rda| rds
    character
  2602. FlowSorted.Blood.EPIC::IDOLOptimizedCpGs.compTable
    IDOL Optimized CpGs matrix for adult blood DNA methylation deconvolution EPIC
    csv| json| rda| rds
    matrix|450 x 6
  2603. FlowSorted.Blood.EPIC::IDOLOptimizedCpGs450klegacy
    IDOL Optimized CpGs for adult blood DNA methylation deconvolution EPIC
    json| rda| rds
    character
  2604. FlowSorted.Blood.EPIC::IDOLOptimizedCpGs450klegacy.compTable
    IDOL Optimized CpGs matrix for adult blood DNA methylation deconvolution EPIC
    csv| json| rda| rds
    matrix|350 x 6
  2605. FlowSorted.Blood.EPIC::IDOLOptimizedCpGsCordBlood
    IDOL Optimized CpGs for umbilical cord blood DNA methylation deconvolution
    json| rda| rds
    character
  2606. FlowSorted.CordBlood.450k::FlowSorted.CordBlood.450k
    Illumina 450k data on sorted cord blood cell populations
    rda| rds
    RGChannelSet
  2607. FlowSorted.CordBlood.450k::FlowSorted.CordBlood.450k.compTable
    Cell composition association table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|429794 x 12
  2608. FlowSorted.CordBlood.450k::FlowSorted.CordBlood.450k.ModelPars
    Model parameters for cord blood cell type estimation
    csv| json| rda| rds
    matrix|700 x 7
  2609. FlowSorted.CordBloodCombined.450k::FlowSorted.CordBloodCombined.450k.compTable
    FlowSorted.CordBloodCombined.450k.compTable
    csv| json| rda| rds
    matrix|517 x 7
  2610. FlowSorted.CordBloodCombined.450k::IDOLOptimizedCpGsCordBlood
    IDOL Optimized CpGs for umbilical cord blood DNA methylation deconvolution
    json| rda| rds
    character
  2611. FlowSorted.CordBloodNorway.450k::FlowSorted.CordBloodNorway.450k
    Illumina Human Methylation data from 450k on sorted cord blood cell populations
    rda| rds
    RGChannelSet
  2612. flowSpecs::fullPanel
    A fully stained spectral cytometry sample
    rda| rds
    flowFrame
  2613. flowSpecs::specMat
    Spectral unmixing matrix
    csv| json| rda| rds
    matrix|13 x 42
  2614. flowSpecs::unmixCtrls
    Unmixing controls
    rda| rds
    flowSet
  2615. flowStats::BackGating
    Sample backgating results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12762 x 7
  2616. flowStats::ITN
    Sample flow cytometry data
    rda| rds
    flowSet
  2617. flowTime::dipdoubletGate
    A gate for the set of all diploid doublets
    rda| rds
    polygonGate
  2618. flowTime::dipsingletGate
    A gate for the set of all diploid singlet yeast cells
    rda| rds
    polygonGate
  2619. flowTime::hapdoubletGate
    A gate for the set of all haploid doublets
    rda| rds
    polygonGate
  2620. flowTime::hapsingletGate
    A gate for the set of all haploid singlets
    rda| rds
    polygonGate
  2621. flowTime::yeastGate
    A gate for the set of all yeast cells
    rda| rds
    polygonGate
  2622. flowVS::HD
    Sample flow cytometry data from healthy individuals
    rda| rds
    flowSet
  2623. fluentGenomics::peaks
    Summarised ATAC-seq peaks as a GRanges object
    rda| rds
    GRanges
  2624. fmcsR::fmcstest
    SD file stored in 'SDFset' object
    rda| rds
    SDFset
  2625. fobitools::fobi
    FOBI Table File - Jul 23, 2021
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|6575 x 16
  2626. fobitools::fobi_terms
    FOBI's 'ontology_index' object - Jul 23, 2021
    rda| rds
    ontology_index
  2627. fobitools::foods
    FOBI Foods Table File - Feb 02, 2021
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|568 x 16
  2628. fobitools::idmap
    FOBI Identifier Map File - Jul 18, 2021
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|697 x 8
  2629. furrowSeg::exampleFurrowMovie
    Example Furrow Movie
    json| rda| rds
    array
  2630. furrowSeg::opto
    Cell Feature Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3627998 x 19
  2631. furrowSeg::sampleTable
    Table of image names with metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 4
  2632. FuseSOM::risom_dat
    IMC Breast Cancer Data Data from A spatial atlas of breast cancer progression using MIBI-TOF and tissue transcriptomics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|69672 x 23
  2633. G4SNVHunter::snp_gr
    Single Nucleotide Polymorphisms GRanges Object
    rda| rds
    GRanges
  2634. G4SNVHunter::snv_gr
    Single Nucleotide Variant GRanges Object
    rda| rds
    GRanges
  2635. gage::bods
    Common gene set data collections
    csv| json| rda| rds
    matrix|19 x 4
  2636. gage::carta.gs
    Common gene set data collections
    json| rda| rds
    list
  2637. gage::egSymb
    Mapping between Entrez Gene IDs and official symbols
    csv| json| rda| rds
    matrix|40784 x 2
  2638. gage::go.gs
    Common gene set data collections
    json| rda| rds
    list
  2639. gage::gse16873
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|11979 x 12
  2640. gage::kegg.gs
    Common gene set data collections
    json| rda| rds
    list
  2641. gage::kegg.gs.dise
    Common gene set data collections
    json| rda| rds
    list
  2642. gage::khier
    Common gene set data collections
    csv| json| rda| rds
    matrix|552 x 3
  2643. gage::korg
    Common gene set data collections
    csv| json| rda| rds
    matrix|8282 x 10
  2644. gageData::bmp6
    A microarray dataset on BMP6 treated mesenchymal stem cells
    csv| json| rda| rds
    matrix|17663 x 4
  2645. gageData::carta.hs
    Common gene set data collections
    json| rda| rds
    list
  2646. gageData::go.sets.hs
    Common gene set data collections
    json| rda| rds
    list
  2647. gageData::go.sets.mm
    Common gene set data collections
    json| rda| rds
    list
  2648. gageData::go.sets.rn
    Common gene set data collections
    json| rda| rds
    list
  2649. gageData::go.sets.sc
    Common gene set data collections
    json| rda| rds
    list
  2650. gageData::go.subs.hs
    Common gene set data collections
    json| rda| rds
    list
  2651. gageData::go.subs.mm
    Common gene set data collections
    json| rda| rds
    list
  2652. gageData::go.subs.rn
    Common gene set data collections
    json| rda| rds
    list
  2653. gageData::go.subs.sc
    Common gene set data collections
    json| rda| rds
    list
  2654. gageData::gse16873.2
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|11979 x 12
  2655. gageData::gse16873.affyid
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|19940 x 12
  2656. gageData::gse16873.full
    GSE16873: a breast cancer microarray dataset
    csv| json| rda| rds
    matrix|11979 x 40
  2657. gageData::hnrnp.cnts
    RNA-seq dataset on HNRNPC knockdown and control HeLa cells
    csv| json| rda| rds
    matrix|22932 x 8
  2658. gageData::kegg.sets.hs
    Common gene set data collections
    json| rda| rds
    list
  2659. gageData::kegg.sets.ko
    Common gene set data collections
    json| rda| rds
    list
  2660. gageData::kegg.sets.mm
    Common gene set data collections
    json| rda| rds
    list
  2661. gageData::kegg.sets.rn
    Common gene set data collections
    json| rda| rds
    list
  2662. gageData::kegg.sets.sc
    Common gene set data collections
    json| rda| rds
    list
  2663. gageData::orf2eg
    Common IDs used for budding yeast (Saccharomyces cerevisa) genes
    json| rda| rds
    character
  2664. gageData::sc.gene
    Common IDs used for budding yeast (Saccharomyces cerevisa) genes
    csv| json| rda| rds
    matrix|6201 x 3
  2665. gageData::sigmet.idx.hs
    Common gene set data collections
    json| rda| rds
    integer
  2666. gageData::sigmet.idx.ko
    Common gene set data collections
    json| rda| rds
    integer
  2667. gageData::sigmet.idx.mm
    Common gene set data collections
    json| rda| rds
    integer
  2668. gageData::sigmet.idx.rn
    Common gene set data collections
    json| rda| rds
    integer
  2669. gageData::sigmet.idx.sc
    Common gene set data collections
    json| rda| rds
    integer
  2670. GARS::GARS_classes
    RNA-seq dataset for testing GARS
    json| rda| rds
    factor
  2671. GARS::GARS_data_norm
    RNA-seq dataset for testing GARS
    csv| json| rda| rds
    matrix|58 x 157
  2672. GARS::GARS_fit_list
    RNA-seq dataset for testing GARS
    json| rda| rds
    numeric
  2673. GARS::GARS_Fitness_score
    RNA-seq dataset for testing GARS
    json| rda| rds
    numeric
  2674. GARS::GARS_pop_list
    RNA-seq dataset for testing GARS
    csv| json| rda| rds
    list
  2675. GARS::GARS_popul
    RNA-seq dataset for testing GARS
    csv| json| rda| rds
    matrix|20 x 0
  2676. GARS::GARS_res_GA
    A GarsSelectedFeatures object for testing GARS
    rda| rds
    GarsSelectedFeatures
  2677. gaschYHS::fig3
    Data from PMID 11102521, Transcriptional responses of yeast to environmental stress, A Gasch and colleagues (2001)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|869 x 108
  2678. gaschYHS::gaschYHS
    Data from PMID 11102521, Transcriptional responses of yeast to environmental stress, A Gasch and colleagues (2001)
    rda| rds
    ExpressionSet
  2679. GateFinder::marker.names
    LPSData
    json| rda| rds
    character
  2680. GateFinder::prop.markers
    LPSData
    json| rda| rds
    numeric
  2681. GateFinder::rawdata
    LPSData
    rda| rds
    flowFrame
  2682. gatom::gene.de.rawEx
    Example gene differential expression data.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|617 x 4
  2683. gatom::gEx
    Example metabolic graph with atom topology.
    rda| rds
    igraph
  2684. gatom::gsEx
    Example scored metabolic graph with atom topology.
    rda| rds
    igraph
  2685. gatom::met.de.rawEx
    Example metabolite differential abundance data.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|54 x 4
  2686. gatom::met.kegg.dbEx
    Example KEGG-based metabolite database object
    json| rda| rds
    list
  2687. gatom::mEx
    Example metabolic module.
    rda| rds
    igraph
  2688. gatom::networkEx
    Example KEGG-based network object
    json| rda| rds
    list
  2689. gatom::org.Mm.eg.gatom.annoEx
    Example organism annotation object
    json| rda| rds
    list
  2690. gcatest::sim_geno
    Simulated data from PSD model
    csv| json| rda| rds
    matrix|10000 x 0
  2691. gcatest::sim_trait
    Simulated data from PSD model
    json| rda| rds
    numeric
  2692. gCrisprTools::aln
    Precalculated alignment statistics of a crispr screen
    csv| json| rda| rds
    matrix|4 x 9
  2693. gCrisprTools::ann
    Annotation file for a mouse Crispr library
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17214 x 9
  2694. gCrisprTools::es
    ExpressionSet of count data from a Crispr screen with strong selection
    rda| rds
    ExpressionSet
  2695. gCrisprTools::essential.genes
    Artificial list of 'essential' genes in the example Crispr screen included for plotting purposes
    json| rda| rds
    character
  2696. gCrisprTools::fit
    Precalculated contrast fit from a Crispr screen
    json| rda| rds
    MArrayLM
  2697. gCrisprTools::resultsDF
    Precalculated gene-level summary of a crispr screen
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17214 x 16
  2698. gCrisprTools::se
    SummarizedExperiment of count data from a Crispr screen with strong selection
    rda| rds
    SummarizedExperiment
  2699. gcrma::affinity.spline.coefs
    Spline coefficients for estimation of affinity from probe sequence
    json| rda| rds
    numeric
  2700. gcspikelite::targets
    Targets file for gcspikelite data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 2
  2701. GDCRNATools::DEGAll
    Output of 'gdcDEAnalysis' for downstream analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15509 x 8
  2702. GDCRNATools::enrichOutput
    Output of 'gdcEnrichAnalysis' for visualization
    csv| xlsx| json| ndjson| rda| rds
    data.frame|105 x 10
  2703. GDCRNATools::lncTarget
    miRNA-lncRNA interactions
    json| rda| rds
    list
  2704. GDCRNATools::mirCounts
    miRNA counts data of TCGA-CHOL
    csv| json| rda| rds
    matrix|2588 x 45
  2705. GDCRNATools::pcTarget
    miRNA-mRNA interactions
    json| rda| rds
    list
  2706. GDCRNATools::rnaCounts
    RNAseq counts data of TCGA-CHOL
    csv| json| rda| rds
    matrix|1000 x 45
  2707. gDR::small_combo_data
    Small data.table with raw combo data used for processing via gDR
    csv| xlsx| json| ndjson| rda| rds
    data.table|3600 x 16
  2708. gDR::small_data
    Small data.table with raw data used for processing via gDR
    csv| xlsx| json| ndjson| rda| rds
    data.table|3300 x 12
  2709. GeDi::macrophage_KEGG_example
    A sample input RData file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|337 x 9
  2710. GeDi::macrophage_Reactome_example
    A sample input RData file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1561 x 9
  2711. GeDi::macrophage_topGO_example
    A sample input RData file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 9
  2712. GeDi::macrophage_topGO_example_small
    A small sample input RData file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 9
  2713. GeDi::ppi_macrophage_topGO_example_small
    PPI
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20458 x 3
  2714. GeDi::sample_geneset
    A sample input text file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|193 x 3
  2715. GeDi::sample_geneset_broken
    A broken input text file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|193 x 2
  2716. GeDi::sample_geneset_empty
    An empty input text file
    csv| xlsx| json| ndjson| rda| rds
    data.frame
  2717. GeDi::sample_geneset_small
    A small sample input text file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29 x 3
  2718. GeDi::scores_macrophage_topGO_example_small
    Sample scores
    rda| rds
    dgCMatrix
  2719. gemini::counts
    Big Papi counts matrix
    csv| json| rda| rds
    matrix|9216 x 16
  2720. gemini::guide.annotation
    Big Papi guide annotations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9216 x 7
  2721. gemini::Input
    Input object from Big Papi
    json| rda| rds
    list
  2722. gemini::Model
    Model object from Big Papi
    json| rda| rds
    list
  2723. gemini::sample.replicate.annotation
    Big Papi sample and replicate annotations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 3
  2724. genArise::Simon
    Dataset: Little fragment of a microarray from IFC UNAM
    csv| rda| rds
    Spot
  2725. genArise::WT.dataset
    Microarray from the IFC
    csv| rda| rds
    DataSet
  2726. GeneBreak::copynumber.data.chr18
    CGHcall Example copynumber data hg18 chr18
    rda| rds
    cghCall
  2727. GeneBreak::copynumber.data.chr20
    CGHcall Example copynumber data hg18 chr20
    rda| rds
    cghCall
  2728. GeneBreak::copynumber.data.chr21
    CGHcall Example copynumber data hg18 chr21
    rda| rds
    cghCall
  2729. GeneBreak::ens.gene.ann.hg18
    Gene Annotation hg18
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21604 x 7
  2730. GeneBreak::ens.gene.ann.hg19
    Gene Annotation hg19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33625 x 7
  2731. GeneBreak::ens.gene.ann.hg38
    Gene Annotation hg38
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35141 x 7
  2732. geneClassifiers::exampleMAS5
    Example MAS5.0 ExpressionSet
    rda| rds
    ExpressionSet
  2733. GeneExpressionSignature::exampleSet
    sample data, a subset of the C-MAP
    rda| rds
    ExpressionSet
  2734. genefilter::tdata
    A small test dataset of Affymetrix Expression data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 26
  2735. genefu::annot.expos
    Gene expression, annotations and clinical data from the International Genomics Consortium
    csv| xlsx| json| ndjson| rda| rds
    data.frame|966 x 7
  2736. genefu::annot.nkis
    Gene expression, annotations and clinical data from van de Vijver et al. 2002
    csv| xlsx| json| ndjson| rda| rds
    data.frame|922 x 7
  2737. genefu::annot.vdxs
    Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007
    csv| xlsx| json| ndjson| rda| rds
    data.frame|966 x 7
  2738. genefu::claudinLowData
    claudinLowData for use in the claudinLow classifier. Data generously provided by Aleix Prat.
    json| rda| rds
    list
  2739. genefu::data.expos
    Gene expression, annotations and clinical data from the International Genomics Consortium
    csv| json| rda| rds
    matrix|353 x 966
  2740. genefu::data.nkis
    Gene expression, annotations and clinical data from van de Vijver et al. 2002
    csv| json| rda| rds
    matrix|150 x 922
  2741. genefu::data.vdxs
    Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007
    csv| json| rda| rds
    matrix|150 x 966
  2742. genefu::demo.expos
    Gene expression, annotations and clinical data from the International Genomics Consortium
    csv| xlsx| json| ndjson| rda| rds
    data.frame|353 x 10
  2743. genefu::demo.nkis
    Gene expression, annotations and clinical data from van de Vijver et al. 2002
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 19
  2744. genefu::demo.vdxs
    Gene expression, annotations and clinical data from Wang et al. 2005 and Minn et al 2007
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 16
  2745. genefu::mod1
    Gene modules published in Desmedt et al. 2008
    csv| json| rda| rds
    list
  2746. genefu::mod2
    Gene modules published in Wirapati et al. 2008
    json| rda| rds
    list
  2747. genefu::modelOvcAngiogenic
    Model used to classify ovarian tumors into Angiogenic and NonAngiogenic subtypes.
    json| rda| rds
    list
  2748. genefu::pam50
    PAM50 classifier for identification of breast cancer molecular subtypes (Parker et al 2009)
    json| rda| rds
    list
  2749. genefu::pam50.robust
    PAM50 classifier for identification of breast cancer molecular subtypes (Parker et al 2009)
    json| rda| rds
    list
  2750. genefu::pam50.scale
    PAM50 classifier for identification of breast cancer molecular subtypes (Parker et al 2009)
    json| rda| rds
    list
  2751. genefu::scmgene.robust
    Subtype Clustering Model using only ESR1, ERBB2 and AURKA genes for identification of breast cancer molecular subtypes
    json| rda| rds
    list
  2752. genefu::scmod1.robust
    Subtype Clustering Model using ESR1, ERBB2 and AURKA modules for identification of breast cancer molecular subtypes (Desmedt et al 2008)
    json| rda| rds
    list
  2753. genefu::scmod2.robust
    Subtype Clustering Model using ESR1, ERBB2 and AURKA modules for identification of breast cancer molecular subtypes (Desmedt et al 2008)
    json| rda| rds
    list
  2754. genefu::sig.endoPredict
    Signature used to compute the endoPredict signature as published by Filipits et al 2011
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 7
  2755. genefu::sig.gene70
    Signature used to compute the 70 genes prognosis profile (GENE70) as published by van't Veer et al. 2002
    csv| xlsx| json| ndjson| rda| rds
    data.frame|70 x 9
  2756. genefu::sig.gene76
    Signature used to compute the Relapse Score (GENE76) as published in Wang et al. 2005
    csv| xlsx| json| ndjson| rda| rds
    data.frame|76 x 10
  2757. genefu::sig.genius
    Gene Expression progNostic Index Using Subtypes (GENIUS) as published by Haibe-Kains et al. 2010.
    csv| json| rda| rds
    list
  2758. genefu::sig.ggi
    Gene expression Grade Index (GGI) as published in Sotiriou et al. 2006
    csv| xlsx| json| ndjson| rda| rds
    data.frame|128 x 9
  2759. genefu::sig.oncotypedx
    Signature used to compute the OncotypeDX signature as published by Paik et al 2004
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 5
  2760. genefu::sig.pik3cags
    Gene expression Grade Index (GGI) as published in Sotiriou et al. 2006
    csv| xlsx| json| ndjson| rda| rds
    data.frame|278 x 3
  2761. genefu::sig.tamr13
    Tamoxifen Resistance signature composed of 13 gene clusters (TAMR13) as published by Loi et al. 2008.
    json| rda| rds
    list
  2762. genefu::sigOvcAngiogenic
    sigOvcAngiogenic dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 13
  2763. genefu::sigOvcCrijns
    sigOvcCrijns dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|86 x 12
  2764. genefu::sigOvcSpentzos
    sigOcvSpentzos dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 13
  2765. genefu::sigOvcTCGA
    sigOvcTCGA dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|193 x 14
  2766. genefu::sigOvcYoshihara
    sigOvcYoshihara dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|88 x 13
  2767. genefu::ssp2003
    SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)
    json| rda| rds
    list
  2768. genefu::ssp2003.robust
    SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)
    json| rda| rds
    list
  2769. genefu::ssp2003.scale
    SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)
    json| rda| rds
    list
  2770. genefu::ssp2006
    SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)
    json| rda| rds
    list
  2771. genefu::ssp2006.robust
    SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)
    json| rda| rds
    list
  2772. genefu::ssp2006.scale
    SSP2006 classifier for identification of breast cancer molecular subtypes (Hu et al 2006)
    json| rda| rds
    list
  2773. GeneGA::wSet
    Codon Adaptation Index (CAI) w tables
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 64
  2774. geneLenDataBase::anoCar1.ensGene.LENGTH
    Transcript length data for the organism anoCar
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20951 x 3
  2775. geneLenDataBase::anoCar1.genscan.LENGTH
    Transcript length data for the organism anoCar
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28102 x 3
  2776. geneLenDataBase::anoCar1.xenoRefGene.LENGTH
    Transcript length data for the organism anoCar
    csv| xlsx| json| ndjson| rda| rds
    data.frame|280427 x 3
  2777. geneLenDataBase::anoGam1.ensGene.LENGTH
    Transcript length data for the organism anoGam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15802 x 3
  2778. geneLenDataBase::anoGam1.geneid.LENGTH
    Transcript length data for the organism anoGam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16857 x 3
  2779. geneLenDataBase::anoGam1.genscan.LENGTH
    Transcript length data for the organism anoGam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26900 x 3
  2780. geneLenDataBase::apiMel1.genscan.LENGTH
    Transcript length data for the organism apiMel
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21863 x 3
  2781. geneLenDataBase::apiMel2.ensGene.LENGTH
    Transcript length data for the organism apiMel
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27755 x 3
  2782. geneLenDataBase::apiMel2.geneid.LENGTH
    Transcript length data for the organism apiMel
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17461 x 3
  2783. geneLenDataBase::apiMel2.genscan.LENGTH
    Transcript length data for the organism apiMel
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20841 x 3
  2784. geneLenDataBase::aplCal1.xenoRefGene.LENGTH
    Transcript length data for the organism aplCal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|159589 x 3
  2785. geneLenDataBase::bosTau2.geneid.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|98183 x 3
  2786. geneLenDataBase::bosTau2.geneSymbol.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12997 x 3
  2787. geneLenDataBase::bosTau2.genscan.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|61380 x 3
  2788. geneLenDataBase::bosTau2.refGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12997 x 3
  2789. geneLenDataBase::bosTau2.sgpGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44919 x 3
  2790. geneLenDataBase::bosTau3.ensGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31417 x 3
  2791. geneLenDataBase::bosTau3.geneid.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50657 x 3
  2792. geneLenDataBase::bosTau3.geneSymbol.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11217 x 3
  2793. geneLenDataBase::bosTau3.genscan.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|51509 x 3
  2794. geneLenDataBase::bosTau3.refGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11217 x 3
  2795. geneLenDataBase::bosTau3.sgpGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41496 x 3
  2796. geneLenDataBase::bosTau4.ensGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30508 x 3
  2797. geneLenDataBase::bosTau4.geneSymbol.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10912 x 3
  2798. geneLenDataBase::bosTau4.genscan.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49598 x 3
  2799. geneLenDataBase::bosTau4.nscanGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10433 x 3
  2800. geneLenDataBase::bosTau4.refGene.LENGTH
    Transcript length data for the organism bosTau
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10912 x 3
  2801. geneLenDataBase::braFlo1.xenoRefGene.LENGTH
    Transcript length data for the organism braFlo
    csv| xlsx| json| ndjson| rda| rds
    data.frame|140583 x 3
  2802. geneLenDataBase::caeJap1.xenoRefGene.LENGTH
    Transcript length data for the organism caeJap
    csv| xlsx| json| ndjson| rda| rds
    data.frame|124422 x 3
  2803. geneLenDataBase::caePb1.xenoRefGene.LENGTH
    Transcript length data for the organism caePb
    csv| xlsx| json| ndjson| rda| rds
    data.frame|174251 x 3
  2804. geneLenDataBase::caePb2.xenoRefGene.LENGTH
    Transcript length data for the organism caePb
    csv| xlsx| json| ndjson| rda| rds
    data.frame|166677 x 3
  2805. geneLenDataBase::caeRem2.xenoRefGene.LENGTH
    Transcript length data for the organism caeRem
    csv| xlsx| json| ndjson| rda| rds
    data.frame|151197 x 3
  2806. geneLenDataBase::caeRem3.xenoRefGene.LENGTH
    Transcript length data for the organism caeRem
    csv| xlsx| json| ndjson| rda| rds
    data.frame|134625 x 3
  2807. geneLenDataBase::calJac1.genscan.LENGTH
    Transcript length data for the organism calJac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64005 x 3
  2808. geneLenDataBase::calJac1.nscanGene.LENGTH
    Transcript length data for the organism calJac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38769 x 3
  2809. geneLenDataBase::calJac1.xenoRefGene.LENGTH
    Transcript length data for the organism calJac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|246593 x 3
  2810. geneLenDataBase::canFam1.ensGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34903 x 3
  2811. geneLenDataBase::canFam1.geneSymbol.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1031 x 3
  2812. geneLenDataBase::canFam1.genscan.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44628 x 3
  2813. geneLenDataBase::canFam1.nscanGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22392 x 3
  2814. geneLenDataBase::canFam1.refGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1031 x 3
  2815. geneLenDataBase::canFam1.xenoRefGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|210498 x 3
  2816. geneLenDataBase::canFam2.ensGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30299 x 3
  2817. geneLenDataBase::canFam2.geneSymbol.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1035 x 3
  2818. geneLenDataBase::canFam2.genscan.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43544 x 3
  2819. geneLenDataBase::canFam2.nscanGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24615 x 3
  2820. geneLenDataBase::canFam2.refGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1035 x 3
  2821. geneLenDataBase::canFam2.xenoRefGene.LENGTH
    Transcript length data for the organism canFam
    csv| xlsx| json| ndjson| rda| rds
    data.frame|207786 x 3
  2822. geneLenDataBase::cavPor3.ensGene.LENGTH
    Transcript length data for the organism cavPor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24925 x 3
  2823. geneLenDataBase::cavPor3.genscan.LENGTH
    Transcript length data for the organism cavPor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|70161 x 3
  2824. geneLenDataBase::cavPor3.nscanGene.LENGTH
    Transcript length data for the organism cavPor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24212 x 3
  2825. geneLenDataBase::cavPor3.xenoRefGene.LENGTH
    Transcript length data for the organism cavPor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|215949 x 3
  2826. geneLenDataBase::cb1.xenoRefGene.LENGTH
    Transcript length data for the organism cb
    csv| xlsx| json| ndjson| rda| rds
    data.frame|148572 x 3
  2827. geneLenDataBase::cb3.xenoRefGene.LENGTH
    Transcript length data for the organism cb
    csv| xlsx| json| ndjson| rda| rds
    data.frame|125815 x 3
  2828. geneLenDataBase::ce2.geneid.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22298 x 3
  2829. geneLenDataBase::ce2.geneSymbol.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25006 x 3
  2830. geneLenDataBase::ce2.refGene.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25006 x 3
  2831. geneLenDataBase::ce4.geneSymbol.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24901 x 3
  2832. geneLenDataBase::ce4.refGene.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24901 x 3
  2833. geneLenDataBase::ce4.xenoRefGene.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24445 x 3
  2834. geneLenDataBase::ce6.ensGene.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35019 x 3
  2835. geneLenDataBase::ce6.geneSymbol.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24909 x 3
  2836. geneLenDataBase::ce6.refGene.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24909 x 3
  2837. geneLenDataBase::ce6.xenoRefGene.LENGTH
    Transcript length data for the organism ce
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24634 x 3
  2838. geneLenDataBase::ci1.geneSymbol.LENGTH
    Transcript length data for the organism ci
    csv| xlsx| json| ndjson| rda| rds
    data.frame|938 x 3
  2839. geneLenDataBase::ci1.refGene.LENGTH
    Transcript length data for the organism ci
    csv| xlsx| json| ndjson| rda| rds
    data.frame|938 x 3
  2840. geneLenDataBase::ci1.xenoRefGene.LENGTH
    Transcript length data for the organism ci
    csv| xlsx| json| ndjson| rda| rds
    data.frame|106383 x 3
  2841. geneLenDataBase::ci2.ensGene.LENGTH
    Transcript length data for the organism ci
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20175 x 3
  2842. geneLenDataBase::ci2.geneSymbol.LENGTH
    Transcript length data for the organism ci
    csv| xlsx| json| ndjson| rda| rds
    data.frame|899 x 3
  2843. geneLenDataBase::ci2.refGene.LENGTH
    Transcript length data for the organism ci
    csv| xlsx| json| ndjson| rda| rds
    data.frame|899 x 3
  2844. geneLenDataBase::ci2.xenoRefGene.LENGTH
    Transcript length data for the organism ci
    csv| xlsx| json| ndjson| rda| rds
    data.frame|181668 x 3
  2845. geneLenDataBase::danRer3.ensGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32143 x 3
  2846. geneLenDataBase::danRer3.geneSymbol.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16416 x 3
  2847. geneLenDataBase::danRer3.refGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16414 x 3
  2848. geneLenDataBase::danRer4.ensGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36065 x 3
  2849. geneLenDataBase::danRer4.geneSymbol.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16498 x 3
  2850. geneLenDataBase::danRer4.genscan.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44534 x 3
  2851. geneLenDataBase::danRer4.nscanGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38648 x 3
  2852. geneLenDataBase::danRer4.refGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16496 x 3
  2853. geneLenDataBase::danRer5.ensGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35653 x 3
  2854. geneLenDataBase::danRer5.geneSymbol.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15146 x 3
  2855. geneLenDataBase::danRer5.refGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15144 x 3
  2856. geneLenDataBase::danRer5.vegaGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13933 x 3
  2857. geneLenDataBase::danRer5.vegaPseudoGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|68 x 3
  2858. geneLenDataBase::danRer6.ensGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32337 x 3
  2859. geneLenDataBase::danRer6.geneSymbol.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15419 x 3
  2860. geneLenDataBase::danRer6.refGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15417 x 3
  2861. geneLenDataBase::danRer6.xenoRefGene.LENGTH
    Transcript length data for the organism danRer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|189158 x 3
  2862. geneLenDataBase::dm1.geneSymbol.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22317 x 3
  2863. geneLenDataBase::dm1.genscan.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16342 x 3
  2864. geneLenDataBase::dm1.refGene.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22317 x 3
  2865. geneLenDataBase::dm2.geneid.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14147 x 3
  2866. geneLenDataBase::dm2.geneSymbol.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23329 x 3
  2867. geneLenDataBase::dm2.genscan.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16434 x 3
  2868. geneLenDataBase::dm2.nscanGene.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14106 x 3
  2869. geneLenDataBase::dm2.refGene.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23329 x 3
  2870. geneLenDataBase::dm3.geneSymbol.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26521 x 3
  2871. geneLenDataBase::dm3.nscanPasaGene.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17830 x 3
  2872. geneLenDataBase::dm3.refGene.LENGTH
    Transcript length data for the organism dm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26521 x 3
  2873. geneLenDataBase::dp2.genscan.LENGTH
    Transcript length data for the organism dp
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16795 x 3
  2874. geneLenDataBase::dp2.xenoRefGene.LENGTH
    Transcript length data for the organism dp
    csv| xlsx| json| ndjson| rda| rds
    data.frame|120722 x 3
  2875. geneLenDataBase::dp3.geneid.LENGTH
    Transcript length data for the organism dp
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14883 x 3
  2876. geneLenDataBase::dp3.genscan.LENGTH
    Transcript length data for the organism dp
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16906 x 3
  2877. geneLenDataBase::dp3.xenoRefGene.LENGTH
    Transcript length data for the organism dp
    csv| xlsx| json| ndjson| rda| rds
    data.frame|65782 x 3
  2878. geneLenDataBase::droAna1.geneid.LENGTH
    Transcript length data for the organism droAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27006 x 3
  2879. geneLenDataBase::droAna1.genscan.LENGTH
    Transcript length data for the organism droAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23991 x 3
  2880. geneLenDataBase::droAna1.xenoRefGene.LENGTH
    Transcript length data for the organism droAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|125034 x 3
  2881. geneLenDataBase::droAna2.genscan.LENGTH
    Transcript length data for the organism droAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29704 x 3
  2882. geneLenDataBase::droAna2.xenoRefGene.LENGTH
    Transcript length data for the organism droAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|166281 x 3
  2883. geneLenDataBase::droEre1.genscan.LENGTH
    Transcript length data for the organism droEre
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17531 x 3
  2884. geneLenDataBase::droEre1.xenoRefGene.LENGTH
    Transcript length data for the organism droEre
    csv| xlsx| json| ndjson| rda| rds
    data.frame|166161 x 3
  2885. geneLenDataBase::droGri1.genscan.LENGTH
    Transcript length data for the organism droGri
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23037 x 3
  2886. geneLenDataBase::droGri1.xenoRefGene.LENGTH
    Transcript length data for the organism droGri
    csv| xlsx| json| ndjson| rda| rds
    data.frame|177723 x 3
  2887. geneLenDataBase::droMoj1.geneid.LENGTH
    Transcript length data for the organism droMoj
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49949 x 3
  2888. geneLenDataBase::droMoj1.genscan.LENGTH
    Transcript length data for the organism droMoj
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32550 x 3
  2889. geneLenDataBase::droMoj1.xenoRefGene.LENGTH
    Transcript length data for the organism droMoj
    csv| xlsx| json| ndjson| rda| rds
    data.frame|133300 x 3
  2890. geneLenDataBase::droMoj2.genscan.LENGTH
    Transcript length data for the organism droMoj
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21516 x 3
  2891. geneLenDataBase::droMoj2.xenoRefGene.LENGTH
    Transcript length data for the organism droMoj
    csv| xlsx| json| ndjson| rda| rds
    data.frame|164524 x 3
  2892. geneLenDataBase::droPer1.genscan.LENGTH
    Transcript length data for the organism droPer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25212 x 3
  2893. geneLenDataBase::droPer1.xenoRefGene.LENGTH
    Transcript length data for the organism droPer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|166527 x 3
  2894. geneLenDataBase::droSec1.genscan.LENGTH
    Transcript length data for the organism droSec
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19811 x 3
  2895. geneLenDataBase::droSec1.xenoRefGene.LENGTH
    Transcript length data for the organism droSec
    csv| xlsx| json| ndjson| rda| rds
    data.frame|171544 x 3
  2896. geneLenDataBase::droSim1.geneid.LENGTH
    Transcript length data for the organism droSim
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15151 x 3
  2897. geneLenDataBase::droSim1.genscan.LENGTH
    Transcript length data for the organism droSim
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16373 x 3
  2898. geneLenDataBase::droSim1.xenoRefGene.LENGTH
    Transcript length data for the organism droSim
    csv| xlsx| json| ndjson| rda| rds
    data.frame|148865 x 3
  2899. geneLenDataBase::droVir1.geneid.LENGTH
    Transcript length data for the organism droVir
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41611 x 3
  2900. geneLenDataBase::droVir1.genscan.LENGTH
    Transcript length data for the organism droVir
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25757 x 3
  2901. geneLenDataBase::droVir1.xenoRefGene.LENGTH
    Transcript length data for the organism droVir
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150843 x 3
  2902. geneLenDataBase::droVir2.genscan.LENGTH
    Transcript length data for the organism droVir
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21080 x 3
  2903. geneLenDataBase::droVir2.xenoRefGene.LENGTH
    Transcript length data for the organism droVir
    csv| xlsx| json| ndjson| rda| rds
    data.frame|166028 x 3
  2904. geneLenDataBase::droYak1.geneid.LENGTH
    Transcript length data for the organism droYak
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17621 x 3
  2905. geneLenDataBase::droYak1.genscan.LENGTH
    Transcript length data for the organism droYak
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20752 x 3
  2906. geneLenDataBase::droYak1.xenoRefGene.LENGTH
    Transcript length data for the organism droYak
    csv| xlsx| json| ndjson| rda| rds
    data.frame|137891 x 3
  2907. geneLenDataBase::droYak2.genscan.LENGTH
    Transcript length data for the organism droYak
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20027 x 3
  2908. geneLenDataBase::droYak2.xenoRefGene.LENGTH
    Transcript length data for the organism droYak
    csv| xlsx| json| ndjson| rda| rds
    data.frame|160783 x 3
  2909. geneLenDataBase::equCab1.geneid.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35577 x 3
  2910. geneLenDataBase::equCab1.geneSymbol.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|915 x 3
  2911. geneLenDataBase::equCab1.nscanGene.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15136 x 3
  2912. geneLenDataBase::equCab1.refGene.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|915 x 3
  2913. geneLenDataBase::equCab1.sgpGene.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30403 x 3
  2914. geneLenDataBase::equCab2.ensGene.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28621 x 3
  2915. geneLenDataBase::equCab2.geneSymbol.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1808 x 3
  2916. geneLenDataBase::equCab2.nscanGene.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19612 x 3
  2917. geneLenDataBase::equCab2.refGene.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1808 x 3
  2918. geneLenDataBase::equCab2.xenoRefGene.LENGTH
    Transcript length data for the organism equCab
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200659 x 3
  2919. geneLenDataBase::felCat3.ensGene.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34314 x 3
  2920. geneLenDataBase::felCat3.geneid.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|204448 x 3
  2921. geneLenDataBase::felCat3.geneSymbol.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|536 x 3
  2922. geneLenDataBase::felCat3.genscan.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|75440 x 3
  2923. geneLenDataBase::felCat3.nscanGene.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28384 x 3
  2924. geneLenDataBase::felCat3.refGene.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|536 x 3
  2925. geneLenDataBase::felCat3.sgpGene.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|51619 x 3
  2926. geneLenDataBase::felCat3.xenoRefGene.LENGTH
    Transcript length data for the organism felCat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|430767 x 3
  2927. geneLenDataBase::fr1.ensGene.LENGTH
    Transcript length data for the organism fr
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38510 x 3
  2928. geneLenDataBase::fr1.genscan.LENGTH
    Transcript length data for the organism fr
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36106 x 3
  2929. geneLenDataBase::fr2.ensGene.LENGTH
    Transcript length data for the organism fr
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48623 x 3
  2930. geneLenDataBase::galGal2.ensGene.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24747 x 3
  2931. geneLenDataBase::galGal2.geneid.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25335 x 3
  2932. geneLenDataBase::galGal2.geneSymbol.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4849 x 3
  2933. geneLenDataBase::galGal2.genscan.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33404 x 3
  2934. geneLenDataBase::galGal2.refGene.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4849 x 3
  2935. geneLenDataBase::galGal2.sgpGene.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18322 x 3
  2936. geneLenDataBase::galGal3.ensGene.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23316 x 3
  2937. geneLenDataBase::galGal3.geneSymbol.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4705 x 3
  2938. geneLenDataBase::galGal3.genscan.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32629 x 3
  2939. geneLenDataBase::galGal3.nscanGene.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22089 x 3
  2940. geneLenDataBase::galGal3.refGene.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4705 x 3
  2941. geneLenDataBase::galGal3.xenoRefGene.LENGTH
    Transcript length data for the organism galGal
    csv| xlsx| json| ndjson| rda| rds
    data.frame|176028 x 3
  2942. geneLenDataBase::gasAcu1.ensGene.LENGTH
    Transcript length data for the organism gasAcu
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29109 x 3
  2943. geneLenDataBase::gasAcu1.nscanGene.LENGTH
    Transcript length data for the organism gasAcu
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38860 x 3
  2944. geneLenDataBase::hg16.acembly.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|222699 x 3
  2945. geneLenDataBase::hg16.ensGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33633 x 3
  2946. geneLenDataBase::hg16.exoniphy.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|177040 x 3
  2947. geneLenDataBase::hg16.geneid.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32255 x 3
  2948. geneLenDataBase::hg16.geneSymbol.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33646 x 3
  2949. geneLenDataBase::hg16.genscan.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42974 x 3
  2950. geneLenDataBase::hg16.knownGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43232 x 3
  2951. geneLenDataBase::hg16.refGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33642 x 3
  2952. geneLenDataBase::hg16.sgpGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42880 x 3
  2953. geneLenDataBase::hg17.acembly.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|243551 x 3
  2954. geneLenDataBase::hg17.acescan.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4486 x 3
  2955. geneLenDataBase::hg17.ccdsGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14332 x 3
  2956. geneLenDataBase::hg17.ensGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33581 x 3
  2957. geneLenDataBase::hg17.exoniphy.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|176927 x 3
  2958. geneLenDataBase::hg17.geneid.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32264 x 3
  2959. geneLenDataBase::hg17.geneSymbol.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33662 x 3
  2960. geneLenDataBase::hg17.genscan.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42807 x 3
  2961. geneLenDataBase::hg17.knownGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39368 x 3
  2962. geneLenDataBase::hg17.refGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33658 x 3
  2963. geneLenDataBase::hg17.sgpGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33665 x 3
  2964. geneLenDataBase::hg17.vegaGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11654 x 3
  2965. geneLenDataBase::hg17.vegaPseudoGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4450 x 3
  2966. geneLenDataBase::hg17.xenoRefGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|113425 x 3
  2967. geneLenDataBase::hg18.acembly.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|258618 x 3
  2968. geneLenDataBase::hg18.acescan.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4486 x 3
  2969. geneLenDataBase::hg18.ccdsGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19856 x 3
  2970. geneLenDataBase::hg18.ensGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|63280 x 3
  2971. geneLenDataBase::hg18.exoniphy.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|178162 x 3
  2972. geneLenDataBase::hg18.geneid.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33410 x 3
  2973. geneLenDataBase::hg18.geneSymbol.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34332 x 3
  2974. geneLenDataBase::hg18.genscan.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43122 x 3
  2975. geneLenDataBase::hg18.knownGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|66803 x 3
  2976. geneLenDataBase::hg18.knownGeneOld3.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56722 x 3
  2977. geneLenDataBase::hg18.refGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34328 x 3
  2978. geneLenDataBase::hg18.sgpGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34023 x 3
  2979. geneLenDataBase::hg18.sibGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200639 x 3
  2980. geneLenDataBase::hg18.xenoRefGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|117059 x 3
  2981. geneLenDataBase::hg19.ccdsGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23754 x 3
  2982. geneLenDataBase::hg19.ensGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|102009 x 3
  2983. geneLenDataBase::hg19.exoniphy.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|186601 x 3
  2984. geneLenDataBase::hg19.geneSymbol.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35433 x 3
  2985. geneLenDataBase::hg19.knownGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|77614 x 3
  2986. geneLenDataBase::hg19.nscanGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|67448 x 3
  2987. geneLenDataBase::hg19.refGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35429 x 3
  2988. geneLenDataBase::hg19.xenoRefGene.LENGTH
    Transcript length data for the organism hg
    csv| xlsx| json| ndjson| rda| rds
    data.frame|125276 x 3
  2989. geneLenDataBase::loxAfr3.xenoRefGene.LENGTH
    Transcript length data for the organism loxAfr
    csv| xlsx| json| ndjson| rda| rds
    data.frame|270315 x 3
  2990. geneLenDataBase::mm7.ensGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33902 x 3
  2991. geneLenDataBase::mm7.geneid.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34992 x 3
  2992. geneLenDataBase::mm7.geneSymbol.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26605 x 3
  2993. geneLenDataBase::mm7.genscan.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46116 x 3
  2994. geneLenDataBase::mm7.knownGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31449 x 3
  2995. geneLenDataBase::mm7.refGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26603 x 3
  2996. geneLenDataBase::mm7.sgpGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35977 x 3
  2997. geneLenDataBase::mm7.xenoRefGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|186014 x 3
  2998. geneLenDataBase::mm8.ccdsGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13333 x 3
  2999. geneLenDataBase::mm8.ensGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34831 x 3
  3000. geneLenDataBase::mm8.geneid.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35954 x 3
  3001. geneLenDataBase::mm8.geneSymbol.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26358 x 3
  3002. geneLenDataBase::mm8.genscan.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44899 x 3
  3003. geneLenDataBase::mm8.knownGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31863 x 3
  3004. geneLenDataBase::mm8.nscanGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24784 x 3
  3005. geneLenDataBase::mm8.refGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26355 x 3
  3006. geneLenDataBase::mm8.sgpGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35469 x 3
  3007. geneLenDataBase::mm8.sibGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|143366 x 3
  3008. geneLenDataBase::mm8.xenoRefGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|121065 x 3
  3009. geneLenDataBase::mm9.acembly.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|173008 x 3
  3010. geneLenDataBase::mm9.ccdsGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17704 x 3
  3011. geneLenDataBase::mm9.ensGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49039 x 3
  3012. geneLenDataBase::mm9.exoniphy.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|172859 x 3
  3013. geneLenDataBase::mm9.geneid.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36708 x 3
  3014. geneLenDataBase::mm9.geneSymbol.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26444 x 3
  3015. geneLenDataBase::mm9.genscan.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45189 x 3
  3016. geneLenDataBase::mm9.knownGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49409 x 3
  3017. geneLenDataBase::mm9.nscanGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21895 x 3
  3018. geneLenDataBase::mm9.refGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26441 x 3
  3019. geneLenDataBase::mm9.sgpGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35983 x 3
  3020. geneLenDataBase::mm9.xenoRefGene.LENGTH
    Transcript length data for the organism mm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|121090 x 3
  3021. geneLenDataBase::monDom1.genscan.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41090 x 3
  3022. geneLenDataBase::monDom4.ensGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33878 x 3
  3023. geneLenDataBase::monDom4.geneSymbol.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|393 x 3
  3024. geneLenDataBase::monDom4.genscan.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35103 x 3
  3025. geneLenDataBase::monDom4.nscanGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20040 x 3
  3026. geneLenDataBase::monDom4.refGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|393 x 3
  3027. geneLenDataBase::monDom4.xenoRefGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|210659 x 3
  3028. geneLenDataBase::monDom5.ensGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34745 x 3
  3029. geneLenDataBase::monDom5.geneSymbol.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|392 x 3
  3030. geneLenDataBase::monDom5.genscan.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32431 x 3
  3031. geneLenDataBase::monDom5.nscanGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45946 x 3
  3032. geneLenDataBase::monDom5.refGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|392 x 3
  3033. geneLenDataBase::monDom5.xenoRefGene.LENGTH
    Transcript length data for the organism monDom
    csv| xlsx| json| ndjson| rda| rds
    data.frame|210255 x 3
  3034. geneLenDataBase::ornAna1.ensGene.LENGTH
    Transcript length data for the organism ornAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30492 x 3
  3035. geneLenDataBase::ornAna1.geneSymbol.LENGTH
    Transcript length data for the organism ornAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 3
  3036. geneLenDataBase::ornAna1.refGene.LENGTH
    Transcript length data for the organism ornAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 3
  3037. geneLenDataBase::ornAna1.xenoRefGene.LENGTH
    Transcript length data for the organism ornAna
    csv| xlsx| json| ndjson| rda| rds
    data.frame|205525 x 3
  3038. geneLenDataBase::oryLat2.ensGene.LENGTH
    Transcript length data for the organism oryLat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25231 x 3
  3039. geneLenDataBase::oryLat2.geneSymbol.LENGTH
    Transcript length data for the organism oryLat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|513 x 3
  3040. geneLenDataBase::oryLat2.refGene.LENGTH
    Transcript length data for the organism oryLat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|513 x 3
  3041. geneLenDataBase::oryLat2.xenoRefGene.LENGTH
    Transcript length data for the organism oryLat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|177756 x 3
  3042. geneLenDataBase::panTro1.ensGene.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38822 x 3
  3043. geneLenDataBase::panTro1.geneid.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32432 x 3
  3044. geneLenDataBase::panTro1.genscan.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41471 x 3
  3045. geneLenDataBase::panTro1.xenoRefGene.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39769 x 3
  3046. geneLenDataBase::panTro2.ensGene.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40215 x 3
  3047. geneLenDataBase::panTro2.geneSymbol.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34565 x 3
  3048. geneLenDataBase::panTro2.genscan.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42844 x 3
  3049. geneLenDataBase::panTro2.nscanGene.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22251 x 3
  3050. geneLenDataBase::panTro2.refGene.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34561 x 3
  3051. geneLenDataBase::panTro2.xenoRefGene.LENGTH
    Transcript length data for the organism panTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|174474 x 3
  3052. geneLenDataBase::petMar1.xenoRefGene.LENGTH
    Transcript length data for the organism petMar
    csv| xlsx| json| ndjson| rda| rds
    data.frame|93352 x 3
  3053. geneLenDataBase::ponAbe2.ensGene.LENGTH
    Transcript length data for the organism ponAbe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30230 x 3
  3054. geneLenDataBase::ponAbe2.geneSymbol.LENGTH
    Transcript length data for the organism ponAbe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3461 x 3
  3055. geneLenDataBase::ponAbe2.genscan.LENGTH
    Transcript length data for the organism ponAbe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42190 x 3
  3056. geneLenDataBase::ponAbe2.nscanGene.LENGTH
    Transcript length data for the organism ponAbe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23499 x 3
  3057. geneLenDataBase::ponAbe2.refGene.LENGTH
    Transcript length data for the organism ponAbe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3461 x 3
  3058. geneLenDataBase::ponAbe2.xenoRefGene.LENGTH
    Transcript length data for the organism ponAbe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|221549 x 3
  3059. geneLenDataBase::priPac1.xenoRefGene.LENGTH
    Transcript length data for the organism priPac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|128539 x 3
  3060. geneLenDataBase::rheMac2.ensGene.LENGTH
    Transcript length data for the organism rheMac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41617 x 3
  3061. geneLenDataBase::rheMac2.geneid.LENGTH
    Transcript length data for the organism rheMac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30202 x 3
  3062. geneLenDataBase::rheMac2.geneSymbol.LENGTH
    Transcript length data for the organism rheMac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|937 x 3
  3063. geneLenDataBase::rheMac2.nscanGene.LENGTH
    Transcript length data for the organism rheMac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22003 x 3
  3064. geneLenDataBase::rheMac2.refGene.LENGTH
    Transcript length data for the organism rheMac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|937 x 3
  3065. geneLenDataBase::rheMac2.sgpGene.LENGTH
    Transcript length data for the organism rheMac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31416 x 3
  3066. geneLenDataBase::rheMac2.xenoRefGene.LENGTH
    Transcript length data for the organism rheMac
    csv| xlsx| json| ndjson| rda| rds
    data.frame|281028 x 3
  3067. geneLenDataBase::rn3.ensGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28545 x 3
  3068. geneLenDataBase::rn3.geneid.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37571 x 3
  3069. geneLenDataBase::rn3.geneSymbol.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16326 x 3
  3070. geneLenDataBase::rn3.genscan.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46474 x 3
  3071. geneLenDataBase::rn3.knownGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8348 x 3
  3072. geneLenDataBase::rn3.nscanGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20120 x 3
  3073. geneLenDataBase::rn3.refGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16302 x 3
  3074. geneLenDataBase::rn3.sgpGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43736 x 3
  3075. geneLenDataBase::rn3.xenoRefGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|185163 x 3
  3076. geneLenDataBase::rn4.ensGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38145 x 3
  3077. geneLenDataBase::rn4.geneid.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38143 x 3
  3078. geneLenDataBase::rn4.geneSymbol.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16302 x 3
  3079. geneLenDataBase::rn4.genscan.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46393 x 3
  3080. geneLenDataBase::rn4.knownGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8202 x 3
  3081. geneLenDataBase::rn4.nscanGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22281 x 3
  3082. geneLenDataBase::rn4.refGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16278 x 3
  3083. geneLenDataBase::rn4.sgpGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36569 x 3
  3084. geneLenDataBase::rn4.xenoRefGene.LENGTH
    Transcript length data for the organism rn
    csv| xlsx| json| ndjson| rda| rds
    data.frame|193523 x 3
  3085. geneLenDataBase::sacCer1.ensGene.LENGTH
    Transcript length data for the organism sacCer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7120 x 3
  3086. geneLenDataBase::sacCer2.ensGene.LENGTH
    Transcript length data for the organism sacCer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7124 x 3
  3087. geneLenDataBase::strPur1.geneSymbol.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|827 x 3
  3088. geneLenDataBase::strPur1.genscan.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|91683 x 3
  3089. geneLenDataBase::strPur1.refGene.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|827 x 3
  3090. geneLenDataBase::strPur1.xenoRefGene.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|285590 x 3
  3091. geneLenDataBase::strPur2.geneSymbol.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|561 x 3
  3092. geneLenDataBase::strPur2.genscan.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|69740 x 3
  3093. geneLenDataBase::strPur2.refGene.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|561 x 3
  3094. geneLenDataBase::strPur2.xenoRefGene.LENGTH
    Transcript length data for the organism strPur
    csv| xlsx| json| ndjson| rda| rds
    data.frame|229113 x 3
  3095. geneLenDataBase::taeGut1.ensGene.LENGTH
    Transcript length data for the organism taeGut
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19163 x 3
  3096. geneLenDataBase::taeGut1.geneSymbol.LENGTH
    Transcript length data for the organism taeGut
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79 x 3
  3097. geneLenDataBase::taeGut1.genscan.LENGTH
    Transcript length data for the organism taeGut
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21680 x 3
  3098. geneLenDataBase::taeGut1.nscanGene.LENGTH
    Transcript length data for the organism taeGut
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9908 x 3
  3099. geneLenDataBase::taeGut1.refGene.LENGTH
    Transcript length data for the organism taeGut
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79 x 3
  3100. geneLenDataBase::taeGut1.xenoRefGene.LENGTH
    Transcript length data for the organism taeGut
    csv| xlsx| json| ndjson| rda| rds
    data.frame|152765 x 3
  3101. geneLenDataBase::tetNig1.ensGene.LENGTH
    Transcript length data for the organism tetNig
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28639 x 3
  3102. geneLenDataBase::tetNig1.geneid.LENGTH
    Transcript length data for the organism tetNig
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26924 x 3
  3103. geneLenDataBase::tetNig1.genscan.LENGTH
    Transcript length data for the organism tetNig
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28060 x 3
  3104. geneLenDataBase::tetNig1.nscanGene.LENGTH
    Transcript length data for the organism tetNig
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30161 x 3
  3105. geneLenDataBase::tetNig2.ensGene.LENGTH
    Transcript length data for the organism tetNig
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23946 x 3
  3106. geneLenDataBase::xenTro1.genscan.LENGTH
    Transcript length data for the organism xenTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|59879 x 3
  3107. geneLenDataBase::xenTro2.ensGene.LENGTH
    Transcript length data for the organism xenTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28704 x 3
  3108. geneLenDataBase::xenTro2.geneSymbol.LENGTH
    Transcript length data for the organism xenTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9715 x 3
  3109. geneLenDataBase::xenTro2.genscan.LENGTH
    Transcript length data for the organism xenTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54063 x 3
  3110. geneLenDataBase::xenTro2.refGene.LENGTH
    Transcript length data for the organism xenTro
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9715 x 3
  3111. GeneMeta::Nevins
    Intensity data for 46 Affymetrix slides with tissue samples of breast tumors
    rda| rds
    ExpressionSet
  3112. GeneNetworkBuilder::ce.IDsMap
    C.elegns gene name to wormbase identifier map
    json| rda| rds
    character
  3113. GeneNetworkBuilder::ce.interactionmap
    transcript regulatory map of _Caenorhabditis elegans_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100633 x 2
  3114. GeneNetworkBuilder::ce.mapIDs
    map file for converting from wormbase identifier to _Caenorhabditis elegans_ gene name
    json| rda| rds
    character
  3115. GeneNetworkBuilder::ce.miRNA.map
    micro RNA of _Caenorhabditis elegans_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|214 x 2
  3116. GeneNetworkBuilder::example.data
    example datasets for documentation
    json| rda| rds
    list
  3117. GeneNetworkBuilder::hs.IDsMap
    map file for converting gene name or sequence name of _Homo sapiens_ to Entrez identifier
    json| rda| rds
    character
  3118. GeneNetworkBuilder::hs.interactionmap
    transcript regulation map of _Homo sapiens_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500597 x 2
  3119. GeneNetworkBuilder::hs.mapIDs
    map file for converting from Entrez identifier to _Homo sapiens_ gene name
    json| rda| rds
    character
  3120. GeneNetworkBuilder::hs.miRNA.map
    micro RNA of _Homo sapiens_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1564 x 2
  3121. GeneOverlap::gs.RNASeq
    Genome size based on RNA-seq data
    json| rda| rds
    integer
  3122. GeneOverlap::hESC.ChIPSeq.list
    ChIP-seq gene lists
    json| rda| rds
    list
  3123. GeneOverlap::hESC.RNASeq.list
    RNA-seq gene lists
    json| rda| rds
    list
  3124. geneplast::ppi.gs
    A pre-processed igraph object for the geneplast package.
    rda| rds
    igraph
  3125. geneplotter::expressionSet133a
    A small dataset for testing
    rda| rds
    ExpressionSet
  3126. geneplotter::IMCAEntrezLink
    A function to plot a graph colored by expression data
    csv| json| rda| rds
    list
  3127. GeneRegionScan::exampleProbeLevelSet
    Example Dataset of class 'ProbeLevelSet'
    rda| rds
    ProbeLevelSet
  3128. GeneRegionScan::genomic
    genomic sequence of gene in ProbeLevelSet
    rda| rds
    DNAStringSet
  3129. GeneRegionScan::mrna
    mRNA sequence of gene in ProbeLevelSet
    rda| rds
    DNAStringSet
  3130. GENESIS::HapMap_ASW_MXL_KINGmat
    Matrix of Pairwise Kinship Coefficient Estimates for the combined HapMap ASW and MXL Sample found with the KING-robust estimator from the KING software.
    csv| json| rda| rds
    matrix|173 x 173
  3131. GENESIS::sample_annotation_1KG
    Annotation for 1000 genomes Phase 3 samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 3
  3132. geNetClassifier::geneSymbols
    Gene symbols associated to human Ensemble IDs.
    json| rda| rds
    character
  3133. geNetClassifier::leukemiasClassifier
    Sample leukemias classifier
    rda| rds
    GeNetClassifierReturn
  3134. GeneticsPed::Falconer5.1
    Pedigree and data examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 3
  3135. GeneticsPed::Mrode2.1
    Pedigree and data examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 7
  3136. GeneticsPed::Mrode3.1
    Pedigree and data examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 5
  3137. GeneTonic::enrichr_output_macrophage
    A sample output from Enrichr
    csv| json| rda| rds
    list
  3138. GeneTonic::fgseaRes
    A sample output from fgsea
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7341 x 8
  3139. GeneTonic::gostres_macrophage
    A sample output from g:Profiler
    json| rda| rds
    list
  3140. GeneTonic::res_macrophage_IFNg_vs_naive
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  3141. GeneTonic::topgoDE_macrophage_IFNg_vs_naive
    A sample 'res_enrich' object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 9
  3142. genomation::cage
    Example CAGE data set.
    rda| rds
    GRanges
  3143. genomation::cpgi
    Example CpG island data set.
    rda| rds
    GRanges
  3144. genomation::genes
    Example RefSeq genes data set.
    rda| rds
    GRanges
  3145. genomation::promoters
    Example promoter data set.
    rda| rds
    GRanges
  3146. GenomAutomorphism::aaindex1
    List of 566 Amino Acid Physicochemical Indexes from AAindex Database
    json| rda| rds
    list
  3147. GenomAutomorphism::aaindex2
    List of 94 Amino Acid Matrices from AAindex
    json| rda| rds
    list
  3148. GenomAutomorphism::aaindex3
    Statistical protein contact potentials matrices from AAindex ver.9.2
    json| rda| rds
    list
  3149. GenomAutomorphism::aln
    Simulated 'DNAStringSet' class object
    rda| rds
    DNAStringSet
  3150. GenomAutomorphism::autby_coef
    Automorphisms between DNA Primate BRCA1 Genes Grouped by Coefficients
    rda| rds
    AutomorphismByCoefList
  3151. GenomAutomorphism::autm
    Automorphisms between DNA Sequences from two COVID-19 genomes
    rda| rds
    Automorphism
  3152. GenomAutomorphism::autm_3d
    Automorphisms between DNA Sequences from two COVID-19 genomes
    rda| rds
    Automorphism
  3153. GenomAutomorphism::autm_z125
    Automorphisms between DNA Sequences from two COVID-19 genomes
    rda| rds
    Automorphism
  3154. GenomAutomorphism::brca1_aln
    Multiple Sequence Alignment (MSA) of Primate BRCA1 DNA repair genes.
    rda| rds
    DNAMultipleAlignment
  3155. GenomAutomorphism::brca1_aln2
    Multiple Sequence Alignment (MSA) of Primate BRCA1 DNA repair genes.
    rda| rds
    DNAMultipleAlignment
  3156. GenomAutomorphism::brca1_autm
    Automorphisms between DNA Sequences from Primate BRCA1 Genes
    rda| rds
    AutomorphismList
  3157. GenomAutomorphism::brca1_autm2
    Automorphisms between DNA Sequences from Primate BRCA1 Genes
    rda| rds
    AutomorphismList
  3158. GenomAutomorphism::cdm_z64
    Codon Distance Matrices for the Standard Genetic Code on \mathbb{Z}_4
    csv| json| rda| rds
    list
  3159. GenomAutomorphism::covid_aln
    Pairwise Sequence Alignment (MSA) of COVID-19 genomes.
    rda| rds
    DNAMultipleAlignment
  3160. GenomAutomorphism::covid_autm
    Automorphisms between DNA Sequences from two COVID-19 genomes
    rda| rds
    Automorphism
  3161. GenomAutomorphism::cyc_aln
    Multiple Sequence Alignment (MSA) of Primate Somatic Cytochrome C
    rda| rds
    DNAMultipleAlignment
  3162. GenomAutomorphism::cyc_autm
    Automorphisms between DNA Sequences from Primate Cytochrome C Genes
    rda| rds
    AutomorphismList
  3163. GenomAutomorphism::dna_phyche
    Some Physicochemical Properties of DNA bases
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 4
  3164. genomeIntervals::i
    Genome Intervals examples
    csv| rda| rds
    Genome_intervals_stranded|7 x 0
  3165. genomeIntervals::j
    Genome Intervals examples
    csv| rda| rds
    Genome_intervals_stranded|5 x 0
  3166. genomeIntervals::k
    Genome Intervals examples
    csv| rda| rds
    Genome_intervals_stranded|5 x 0
  3167. GenomicDistributions::cellTypeMetadata
    Table the maps cell types to tissues and groups
    csv| xlsx| json| ndjson| rda| rds
    data.table|112 x 3
  3168. GenomicDistributions::chromSizes_hg19
    hg19 chromosome sizes
    json| rda| rds
    integer
  3169. GenomicDistributions::exampleOpenSignalMatrix_hg19
    A dataset containing a subset of open chromatin regions across all cell types defined by ENCODE for Homo Sapiens hg19
    csv| xlsx| json| ndjson| rda| rds
    data.table|100 x 14
  3170. GenomicDistributions::geneModels_hg19
    hg38 gene models
    rda| rds
    list
  3171. GenomicDistributions::setB_100
    Example BED file read with rtracklayer::import
    rda| rds
    GRanges
  3172. GenomicDistributions::TSS_hg19
    hg19 TSS locations
    rda| rds
    GRanges
  3173. GenomicDistributions::vistaEnhancers
    Example BED file read with rtracklayer::import
    rda| rds
    GRanges
  3174. genomicInstability::geneLength
    Average length of human and mouse known genes
    json| rda| rds
    integer
  3175. genomicInstability::geneLength
    Average length of human and mouse known genes
    json| rda| rds
    integer
  3176. genomicInstability::genePosition
    Chromosomal coordinate of human and mouse known genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25221 x 2
  3177. genomicInstability::genePosition
    Chromosomal coordinate of human and mouse known genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24116 x 2
  3178. GenomicInteractions::hg19.refseq.transcripts
    Human Refseq transcripts from chr 17-18
    rda| rds
    CompressedGRangesList
  3179. GenomicInteractions::hic_example_data
    Example HiC dataset
    rda| rds
    GenomicInteractions
  3180. GenomicInteractions::mm9_refseq_promoters
    Mouse Refseq promoters from chr 14-15
    rda| rds
    GRanges
  3181. GenomicInteractions::thymus_enh
    Putative enhancers from mouse thymus data
    rda| rds
    GRanges
  3182. GenomicPlot::gf5_genomic
    Toy data for examples and testing of the 'GenomicPlot' package
    rda| rds
    list
  3183. GenomicPlot::gf5_meta
    Toy data for examples and testing of the 'GenomicPlot' package
    rda| rds
    list
  3184. GenomicSuperSignature::droplist
    MeSH terms to be excluded in drawWordcloud function
    json| rda| rds
    character
  3185. GenomicSuperSignature::filterList
    RAVs that will output with quality-control messages
    json| rda| rds
    list
  3186. GenomicSuperSignature::miniAllZ
    Subset of allZ matrix constructed from 8 CRC training datasets
    csv| json| rda| rds
    matrix|100 x 160
  3187. GenomicSuperSignature::miniRAVmodel
    RAVmodel from 536 studies, annotated with MSigDB C2
    rda| rds
    PCAGenomicSignatures
  3188. GenomicSuperSignature::miniTCGA
    Subset of TCGA-COAD and TCGA-BRCA RNA sequencing datasets
    rda| rds
    list
  3189. GenomicSuperSignature::res_hcut
    Subset of allZ matrix constructed from 8 CRC training datasets
    rda| rds
    hclust
  3190. GenProSeq::example_luxA
    Example Data for Protein Sequences
    json| rda| rds
    character
  3191. GenProSeq::example_PTEN
    Example Data for Protein Sequences
    json| rda| rds
    character
  3192. GenVisR::brcaMAF
    Truncated BRCA MAF file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2773 x 55
  3193. GenVisR::cytoGeno
    Cytogenetic banding dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2777 x 6
  3194. GenVisR::HCC1395_Germline
    Germline Calls
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9200 x 5
  3195. GenVisR::HCC1395_N
    Normal BAM
    csv| xlsx| json| ndjson| rda| rds
    data.frame|59 x 6
  3196. GenVisR::HCC1395_T
    Tumor BAM
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52 x 6
  3197. GenVisR::hg19chr
    hg19 chromosome boundaries
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  3198. GenVisR::LucCNseg
    Truncated CN segments
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3336 x 6
  3199. GenVisR::PIK3CA
    Subset MAF file for PIK3CA gene
    csv| xlsx| json| ndjson| rda| rds
    data.frame|361 x 19
  3200. GenVisR::SNPloci
    Identity snps
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 5
  3201. GeoDiff::demoData
    A demo dataset for GeoMx Cancer Transcriptome Atlas (CTA) panel
    rda| rds
    NanoStringGeoMxSet
  3202. GeoDiff::kidney
    A demo dataset for GeoMx Human Whole Transcriptome Atlas (WTA) panel
    rda| rds
    NanoStringGeoMxSet
  3203. GeoDiff::NBthDEmod2
    A demo example output list returned by function fitNBthDE
    json| rda| rds
    list
  3204. GeoDiff::NBthmDEmod2
    A demo example output list returned by function fitNBthmDE
    rda| rds
    list
  3205. GeoDiff::NBthmDEmod2slope
    A demo example output list returned by function fitNBthmDE
    rda| rds
    list
  3206. GeoTcgaData::gene_cov
    a data.frame of gene length and GC content
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27341 x 2
  3207. GeoTcgaData::geneExpress
    a data.frame of gene expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10779 x 2
  3208. GeoTcgaData::GSE66705_sample2
    a matrix of gene expression data in GEO
    csv| json| rda| rds
    matrix|999 x 3
  3209. GeoTcgaData::kegg_liver
    a matrix of gene expression data in TCGA
    csv| json| rda| rds
    matrix|100 x 150
  3210. GeoTcgaData::module
    a matrix of module name, gene symbols, and the number of gene symbols
    csv| json| rda| rds
    matrix|176 x 3
  3211. GeoTcgaData::profile
    a matrix of gene expression data in TCGA
    csv| json| rda| rds
    matrix|9 x 9
  3212. GeoTcgaData::ventricle
    a matrix of gene expression data in GEO
    csv| json| rda| rds
    matrix|32 x 20
  3213. GeuvadisTranscriptExpr::counts
    Sample data for sQTL analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|208 x 93
  3214. GeuvadisTranscriptExpr::gene_ranges
    Sample data for sQTL analysis
    rda| rds
    GRanges
  3215. GeuvadisTranscriptExpr::genotypes
    Sample data for sQTL analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1330 x 95
  3216. GeuvadisTranscriptExpr::snp_ranges
    Sample data for sQTL analysis
    rda| rds
    GRanges
  3217. gg4way::airwayFit
    airwayFit data
    json| rda| rds
    MArrayLM
  3218. GGPA::simulation
    Simulation dataa for graph-GPA
    json| rda| rds
    list
  3219. GIGSEA::heart.metaXcan
    heart.metaXcan
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11537 x 12
  3220. GIGSEA::MSigDB.KEGG.Pathway
    MSigDB.KEGG.Pathway
    rda| rds
    list
  3221. GIGSEA::MSigDB.miRNA
    MSigDB.miRNA
    rda| rds
    list
  3222. GIGSEA::MSigDB.TF
    MSigDB.TF
    rda| rds
    list
  3223. GIGSEA::TargetScan.miRNA
    TargetScan.miRNA
    rda| rds
    list
  3224. GIGSEAdata::Fantom5.TF
    Fantom5.TF
    rda| rds
    list
  3225. GIGSEAdata::org.Hs.eg.GO
    org.Hs.eg.GO
    rda| rds
    list
  3226. gINTomics::mirna_hsa
    miRNA IDs. Dataset containing lastly definition of miRNAs (Names, Accessions, Sequences, Families and others) from different miRBase versions (From miRBase version 6 to version 22).
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1914 x 13
  3227. gINTomics::mmultiassay_ov
    Example data for a standard workflow. This is an example dataset containing a MultiAssayExperiment of 20 ovarian cancer (OVC) patients extracted from the Cancer Genome Atlas (TCGA) database. The object contains all the available input data types: Gene expression data, miRNA expression data, gene methylation data, gene Copy Number Variations and miRNA Copy Number Variations.
    rda| rds
    MultiAssayExperiment
  3228. GLAD::array1
    Bladder cancer CGH data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7392 x 5
  3229. GLAD::array2
    Bladder cancer CGH data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7392 x 5
  3230. GLAD::array3
    Bladder cancer CGH data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7392 x 5
  3231. GLAD::cytoband
    Cytogenetic banding
    csv| xlsx| json| ndjson| rda| rds
    data.frame|395 x 7
  3232. GLAD::gm00143
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3233. GLAD::gm01524
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3234. GLAD::gm01535
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3235. GLAD::gm01750
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3236. GLAD::gm02948
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3237. GLAD::gm03134
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3238. GLAD::gm03563
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3239. GLAD::gm03576
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3240. GLAD::gm04435
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3241. GLAD::gm05296
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3242. GLAD::gm07081
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3243. GLAD::gm07408
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3244. GLAD::gm10315
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3245. GLAD::gm13031
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3246. GLAD::gm13330
    Public CGH data of Snijders
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2271 x 6
  3247. GLAD::P20
    Public CGH data of Veltman
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1747 x 7
  3248. GLAD::P9
    Public CGH data of Veltman
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1747 x 7
  3249. glmSparseNet::string.network.700.cache
    Cache of protein-protein network, as it takes some time to retrieve and process this will facilitate the vignette building
    rda| rds
    dgCMatrix
  3250. GlobalAncova::bindata
    Simulated binary data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 25
  3251. GlobalAncova::colon.normal
    Gene expression data
    csv| json| rda| rds
    matrix|1747 x 12
  3252. GlobalAncova::colon.pheno
    Covariate information for the colon data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 5
  3253. GlobalAncova::colon.tumour
    Gene expression data
    csv| json| rda| rds
    matrix|1747 x 12
  3254. GlobalAncova::pathways
    Cancer related pathways
    json| rda| rds
    list
  3255. GlobalAncova::phenodata
    Covariate information for the van t'Veer data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 4
  3256. GlobalAncova::vantVeer
    Gene expression data
    csv| json| rda| rds
    matrix|1113 x 96
  3257. globalSeq::toydata
    Toydata
    json| rda| rds
    list
  3258. GloScope::example_SCE
    SingleCellExperiment containing example inputs to GloScope
    rda| rds
    SingleCellExperiment
  3259. GloScope::example_SCE_small
    SingleCellExperiment containing example inputs to GloScope
    rda| rds
    SingleCellExperiment
  3260. glycoTraitR::glycanDatabase
    Glycan annotation reference database
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|10936 x 4
  3261. glycoTraitR::meta_toyexample
    Toy metadata for glycoTraitR examples
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|34 x 3
  3262. gmoviz::bright_colours_opaque
    gmoviz colour sets
    json| rda| rds
    character
  3263. gmoviz::bright_colours_transparent
    gmoviz colour sets
    json| rda| rds
    character
  3264. gmoviz::nice_colours
    gmoviz colour sets
    json| rda| rds
    character
  3265. gmoviz::pastel_colours
    gmoviz colour sets
    json| rda| rds
    character
  3266. gmoviz::rich_colours
    gmoviz colour sets
    json| rda| rds
    character
  3267. GMRP::beta.data
    Beta Data Of SNP Regressed on Causal Variables and Disease
    csv| xlsx| json| ndjson| rda| rds
    data.frame|368 x 5
  3268. GMRP::cad.data
    boldGWAS Meta-analyzed Data of Coronary Artery Disease
    csv| xlsx| json| ndjson| rda| rds
    data.table|1609 x 12
  3269. GMRP::lpd.data
    *GWAS* Meta-analyzed Data of Lipoprotein Cholesterols
    csv| xlsx| json| ndjson| rda| rds
    data.table|1609 x 40
  3270. GMRP::SNP358.data
    Data of 358 SNPs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|358 x 3
  3271. GMRP::SNP368annot.data
    Annotation data of 368SNPs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1053 x 6
  3272. GOaGO::genePairsGM12878
    Gene pairs associated with chromatin loops in GM12878 cell line
    csv| xlsx| json| ndjson| rda| rds
    data.table|2339 x 13
  3273. goatea::example_Colameo_MS
    Example Colameo MS data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3935 x 10
  3274. goatea::example_Colameo_RNA
    Example Colameo RNA data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11922 x 10
  3275. goatea::example_enrichment
    An example enrichment
    csv| xlsx| rda| rds
    tbl_df|10 x 17
  3276. goatea::example_genelist
    An example genelist
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 5
  3277. goatea::example_genes_overview
    An example genes overview
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|100 x 13
  3278. goatea::example_genesets
    Example genesets
    csv| xlsx| rda| rds
    tbl_df|10 x 10
  3279. goatea::example_ppi_data
    An example ppi data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|15 x 5
  3280. GOexpress::AlvMac
    Sample data from a RNAseq experiment.
    rda| rds
    ExpressionSet
  3281. GOexpress::AlvMac_allgenes
    Example of custom gene feature annotations.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 3
  3282. GOexpress::AlvMac_allGO
    Example of custom gene ontology annotations.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13302 x 3
  3283. GOexpress::AlvMac_GOgenes
    Example of custom mapping between gene ontology identifiers and gene features.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|191614 x 2
  3284. GOexpress::AlvMac_results
    Sample output from the 'GO_analyse()' function on an RNAseq experiment.
    json| rda| rds
    list
  3285. GOexpress::AlvMac_results.pVal
    Sample output from the 'pValue_GO()' function on an RNAseq experiment.
    json| rda| rds
    list
  3286. GOexpress::microarray2dataset
    Table mapping probeset identifier prefixes to datasets in the Ensembl BioMart.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 6
  3287. GOexpress::prefix2dataset
    Table mapping Ensembl gene identifier prefixes to BioMart datasets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|69 x 4
  3288. golubEsets::Golub_Merge
    Combined Test and Training Sets from the Golub Paper
    rda| rds
    ExpressionSet
  3289. golubEsets::Golub_Test
    Test Set Data from the Golub Paper
    rda| rds
    ExpressionSet
  3290. golubEsets::Golub_Train
    Training Set from the Golub Paper
    rda| rds
    ExpressionSet
  3291. golubEsets::golubMerge
    Combined Test and Training Sets from the Golub Paper
    rda| rds
    exprSet
  3292. golubEsets::golubTest
    Test Set Data from the Golub Paper
    rda| rds
    exprSet
  3293. golubEsets::golubTrain
    Training Set from the Golub Paper
    rda| rds
    exprSet
  3294. GOpro::exrtcga
    Expressions of human genes.
    rda| rds
    MultiAssayExperiment
  3295. goProfiles::CD4LLids
    Entrez identifiers for CD4-TCells example
    json| rda| rds
    character
  3296. goProfiles::clustKidneyMF2
    Ready 2 cluster equivalence distance matrix obtained from the analysis of the "Kidney Dataset" at level 2 of the MF ontology
    rda| rds
    equivClust
  3297. goProfiles::diseaseIds
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3298. goProfiles::dominantIds
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3299. goProfiles::dominantIdsEBI
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3300. goProfiles::dominantIdsNCBI
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3301. goProfiles::drosophilaIds
    Entrez identifiers for genes related with an eye mutation in drosophila
    json| rda| rds
    integer
  3302. goProfiles::hugoIds
    Entrez Identifiers obtained from the Human Genome Organization
    json| rda| rds
    character
  3303. goProfiles::kidneyGeneLists
    Gene-lists related to kidney transplantation rejection
    json| rda| rds
    list
  3304. goProfiles::michaudIds
    Entrez identifiers for genes related with an eye mutation in drosophila
    json| rda| rds
    character
  3305. goProfiles::morbidmapIds
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3306. goProfiles::ostrinIds
    Entrez identifiers for genes related with an eye mutation in drosophila
    json| rda| rds
    character
  3307. goProfiles::recessiveIds
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3308. goProfiles::recessiveIdsEBI
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3309. goProfiles::recessiveIdsNCBI
    Entrez identifiers for disease-related genes in the OMIM database
    json| rda| rds
    character
  3310. goProfiles::singh01EntrezIDs
    Prostate cancer-related genes
    json| rda| rds
    character
  3311. goProfiles::singh05EntrezIDs
    Prostate cancer-related genes
    json| rda| rds
    character
  3312. goProfiles::welsh01EntrezIDs
    Prostate cancer-related genes
    json| rda| rds
    character
  3313. goProfiles::welsh05EntrezIDs
    Prostate cancer-related genes
    json| rda| rds
    character
  3314. GOSemSim::gotbl
    Information content of GO terms
    csv| xlsx| json| ndjson| rda| rds
    data.frame|87439 x 5
  3315. goseq::genes
    Androgen stimulation of prostate cancer Cell lines.
    json| rda| rds
    integer
  3316. goSorensen::allContTabs
    Example of the output produced by the function 'allBuildEnrichTable'.
    rda| rds
    allTableList
  3317. goSorensen::allContTabsNoLevel
    Example of the output produced by the function 'allBuildEnrichTable'.
    rda| rds
    allTableList
  3318. goSorensen::allDissMatrx
    Example of the output produced by the function 'allSorenThreshold'. It contains the dissimilarity matrices for GO levels from 3 to 10 across the ontologies BP, CC and MF.
    csv| rda| rds
    distList
  3319. goSorensen::allDissMatrxNoLevel
    Example of the output produced by the function 'allSorenThreshold'. It contains the dissimilarity matrices without GO-Level restriction across the ontologies BP, CC and MF.
    csv| rda| rds
    distList
  3320. goSorensen::allEqTests
    Example of the output produced by the function 'allEquivTestSorensen' using the normal asymptotic distribution.
    rda| rds
    AllEquivSDhtest
  3321. goSorensen::allEqTests_boot
    Example of the output produced by the function 'allEquivTestSorensen' using the approximated bootstrap distribution.
    rda| rds
    AllEquivSDhtest
  3322. goSorensen::allEqTests_bootNoLevel
    Example of the output produced by the function 'allEquivTestSorensen' using the approximated bootstrap distribution.
    rda| rds
    AllEquivSDhtest
  3323. goSorensen::allEqTestsNoLevel
    Example of the output produced by the function 'allEquivTestSorensen' using the normal asymptotic distribution.
    rda| rds
    AllEquivSDhtest
  3324. goSorensen::allOncoGeneLists
    7 gene lists possibly related with cancer
    json| rda| rds
    list
  3325. goSorensen::cont_all_BP
    Example of the output produced by the function 'buildEnrichTable'. It contains the enrichment contingency tables for all the lists from 'allOncoGeneLists' for ontology BP without GO-Level restriction.
    rda| rds
    tableList
  3326. goSorensen::cont_all_BP4
    Example of the output produced by the function 'buildEnrichTable'. It contains the enrichment contingency tables for all the lists from 'allOncoGeneLists' at level 4 of ontology BP.
    rda| rds
    tableList
  3327. goSorensen::cont_atlas.sanger_BP
    Example of the output produced by the function 'buildEnrichTable'. It contains the enrichment contingency table for two lists for ontology BP without GO-Level restriction.
    csv| rda| rds
    table|2 x 2
  3328. goSorensen::cont_atlas.sanger_BP4
    Example of the output produced by the function 'buildEnrichTable'. It contains the enrichment contingency table for two lists at level 4 of ontology BP.
    csv| rda| rds
    table|2 x 2
  3329. goSorensen::dissMatrx_BP
    Example of the output produced by the function 'sorenThreshold'. It contains the dissimilarity matrix for the ontology BP without GO-Level restriction.
    rda| rds
    dist
  3330. goSorensen::dissMatrx_BP4
    Example of the output produced by the function 'sorenThreshold'. It contains the dissimilarity matrix at GO level 4, for the ontology BP.
    rda| rds
    dist
  3331. goSorensen::enrichedInBP
    Example of the output produced by the function 'enrichedIn'. It contains exclusively GO terms enriched in at least one list of 'allOncoGeneLists', ontology BP, without GO-Level restriction.
    csv| json| rda| rds
    matrix|2695 x 7
  3332. goSorensen::enrichedInBP4
    Example of the output produced by the function 'enrichedIn'. It contains exclusively GO terms enriched in at least one list of 'allOncoGeneLists', ontology BP, GO-Level 4.
    csv| json| rda| rds
    matrix|346 x 7
  3333. goSorensen::eqTest_all_BP
    Example of the output produced by the function 'equivTestSorensen'. It contains all the possible equivalence tests for the lists from 'allOncoGeneLists' in ontology BP without GO-Level restriction.
    rda| rds
    equivSDhtestList
  3334. goSorensen::eqTest_all_BP4
    Example of the output produced by the function 'equivTestSorensen'. It contains all the possible equivalence tests for the lists from 'allOncoGeneLists' at level 4 of ontology BP.
    rda| rds
    equivSDhtestList
  3335. goSorensen::eqTest_atlas.sanger_BP
    Example of the output produced by the function 'equivTestSorensen'. It contains the equivalence test for comparing two lists in ontology BP without GO-Level restriction.
    rda| rds
    equivSDhtest
  3336. goSorensen::eqTest_atlas.sanger_BP4
    Example of the output produced by the function 'equivTestSorensen'. It contains the equivalence test for comparing two lists at level 4 of ontology BP.
    rda| rds
    equivSDhtest
  3337. goSorensen::fullEnrichedInBP
    Example of the output produced by the function 'enrichedIn'. It contains all the GO terms enriched or not-enriched in the lists of 'allOncoGeneLists', ontology BP, without GO-Level restriction.
    csv| json| rda| rds
    matrix|5880 x 7
  3338. goSorensen::fullEnrichedInBP4
    Example of the output produced by the function 'enrichedIn'. It contains all the GO terms enriched or not-enriched in the lists of 'allOncoGeneLists', ontology BP, GO-Level 4.
    csv| json| rda| rds
    matrix|3323 x 7
  3339. goSorensen::pbtGeneLists
    14 gene lists possibly related with kidney transplant rejection
    json| rda| rds
    list
  3340. goSTAG::goSTAG_example_gene_lists
    goSTAG Example Gene Lists
    json| rda| rds
    list
  3341. goSTAG::goSTAG_go_genes_human
    goSTAG GO Genes (Human)
    json| rda| rds
    list
  3342. goSTAG::goSTAG_go_genes_mouse
    goSTAG GO Genes (Mouse)
    json| rda| rds
    list
  3343. goSTAG::goSTAG_go_genes_rat
    goSTAG GO Genes (Rat)
    json| rda| rds
    list
  3344. goSTAG::rat_cancer_therapeutics_gene_lists
    Rat Cancer Therapeutics Gene Lists
    json| rda| rds
    list
  3345. GOstats::Bdists
    Distance matrices for the BCR/ABL and NEG subgroups.
    csv| json| rda| rds
    matrix|206 x 206
  3346. GOstats::Ndists
    Distance matrices for the BCR/ABL and NEG subgroups.
    csv| json| rda| rds
    matrix|206 x 206
  3347. GOTHiC::filtered
    A GenomicRangesList object used as an example in the GOTHiC package
    rda| rds
    list
  3348. goTools::affylist
    List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos
    json| rda| rds
    list
  3349. goTools::operonlist
    List of probe ids from Affymetrix hgu133a chip and Operon Version 2 Human oligos
    json| rda| rds
    list
  3350. gpaExample::exampleData
    PGC GWAS Dataset and Annotation Dataset
    json| rda| rds
    list
  3351. GPlinksR::gp_example_inputs
    Example Gene and Peak Inputs for GPlinksR
    json| rda| rds
    list
  3352. GPlinksR::gp_example_links
    Example Link Table for the Packaged GPlinksR Demo Subset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 3
  3353. GrafGen::example_metadata
    Metadata for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|206 x 3
  3354. GrafGen::grafGen_example_results
    Example results
    rda| rds
    grafpop
  3355. GrafGen::grafGen_reference_dataframe
    Reference data results for plots
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1011 x 21
  3356. GrafGen::grafGen_reference_results
    Reference data results
    rda| rds
    grafpop
  3357. GrafGen::HpyloriData
    H. pylori data
    rda| rds
    UnstitchedGPos
  3358. graph::apopGraph
    KEGG apoptosis pathway graph
    rda| rds
    graphNEL
  3359. graph::biocRepos
    A graph representing the Bioconductor package repository
    rda| rds
    graphNEL
  3360. graph::esetsFemale
    MultiGraph edgeSet data
    json| rda| rds
    list
  3361. graph::esetsMale
    MultiGraph edgeSet data
    json| rda| rds
    list
  3362. graph::graphExamples
    A List Of Example Graphs
    rda| rds
    list
  3363. graph::IMCAAttrs
    KEGG Integrin Mediated Cell Adhesion graph
    rda| rds
    list
  3364. graph::IMCAGraph
    KEGG Integrin Mediated Cell Adhesion graph
    rda| rds
    graphNEL
  3365. graph::MAPKsig
    A graph encoding parts of the MAPK signaling pathway
    rda| rds
    graphNEL
  3366. graph::MAPKsig
    A graph encoding parts of the MAPK signaling pathway
    rda| rds
    graphNEL
  3367. graph::pancrCaIni
    A graph encoding parts of the pancreatic cancer initiation pathway
    rda| rds
    graphNEL
  3368. GraphAT::causton
    Yeast mRNA Expression Data
    csv| json| rda| rds
    matrix|6015 x 45
  3369. GraphAT::ccCM
    Cell-Cycle Cluster Matrix
    csv| json| rda| rds
    matrix|2885 x 2885
  3370. GraphAT::depthmatBP
    Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
    csv| json| rda| rds
    matrix|3125 x 0
  3371. GraphAT::depthmatCC
    Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
    csv| json| rda| rds
    matrix|2771 x 0
  3372. GraphAT::depthmatMF
    Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
    csv| json| rda| rds
    matrix|2656 x 0
  3373. GraphAT::giaever
    Yeast Gene-Knockout Fitness Data
    csv| json| rda| rds
    matrix|5922 x 0
  3374. GraphAT::mRNAclusters
    Yeast mRNA Expression Data Cluster Memberships
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3000 x 2
  3375. GraphAT::nNamescc
    Cell-Cycle Cluster Matrix
    json| rda| rds
    factor
  3376. GraphAT::Phenoclusters
    Yeast Gene-Knockout Fitness Data Cluster Memberships
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3000 x 2
  3377. GRENITS::Athaliana_ODE
    Gene expression time series generated with ODE model
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 50
  3378. GRENITS::Athaliana_ODE_4NoiseReps
    Gene expression time series generated with ODE model with added noise
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 0
  3379. GreyListChIP::ce10.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3380. GreyListChIP::ce11.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3381. GreyListChIP::dm3.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3382. GreyListChIP::dm6.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3383. GreyListChIP::grch37.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3384. GreyListChIP::grch38.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3385. GreyListChIP::greyList
    A sample 'GreyList' object for use in examples.
    rda| rds
    GreyList
  3386. GreyListChIP::hg19.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3387. GreyListChIP::hg38.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3388. GreyListChIP::mm10.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3389. GreyListChIP::mm9.blacklist
    A 'GRanges' object representing ENCODE signal artefact or "black list" regions.
    rda| rds
    GRanges
  3390. GRmetrics::inputCaseA
    Simulated dose-response assay data (Case A)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1008 x 9
  3391. GRmetrics::inputCaseC
    Simulated dose-response assay data (Case C)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1352 x 7
  3392. grndata::Availabledata
    Available datasources
    json| rda| rds
    character
  3393. grndata::gnw1565.data
    Simulated Gene Expression Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1565 x 0
  3394. grndata::gnw1565.net
    Simulated Gene Expression Data
    csv| json| rda| rds
    matrix|1565 x 0
  3395. grndata::gnw2000.data
    Simulated Gene Expression Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 0
  3396. grndata::gnw2000.net
    Simulated Gene Expression Data
    csv| json| rda| rds
    matrix|2000 x 0
  3397. grndata::rogers1000.data
    Simulated Gene Expression Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 0
  3398. grndata::rogers1000.net
    Simulated Gene Expression Data
    csv| json| rda| rds
    matrix|1000 x 0
  3399. grndata::syntren1000.data
    Simulated Gene Expression Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 0
  3400. grndata::syntren1000.net
    Simulated Gene Expression Data
    csv| json| rda| rds
    matrix|1000 x 0
  3401. grndata::syntren300.data
    Simulated Gene Expression Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|800 x 0
  3402. grndata::syntren300.net
    Simulated Gene Expression Data
    csv| json| rda| rds
    matrix|300 x 0
  3403. grndata::toy.data
    Simulated Toy example of Gene Expression Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64 x 64
  3404. grndata::toy.net
    Simulated Toy example of Gene Expression Data
    csv| json| rda| rds
    matrix|64 x 64
  3405. growkar::yeast_growth_data
    Optical Density (OD600) of growing yeast cells
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|49 x 10
  3406. GSALightning::expression
    Breast Cancer Data from The Cancer Genome Atlas (TCGA)
    csv| json| rda| rds
    matrix|909 x 1218
  3407. GSALightning::sampleInfo
    Sample Information for the Breast Cancer Data from The Cancer Genome Atlas (TCGA)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1218 x 3
  3408. GSALightning::targetGenes
    Target Genes of Distal Regulatory Elements
    json| rda| rds
    list
  3409. GSAR::p53DataSet
    p53 Dataset of the NCI-60 Cell Lines
    csv| json| rda| rds
    matrix|8655 x 50
  3410. GSBenchMark::diracpathways
    The pathways downloaded from DIRAC paper
    json| rda| rds
    list
  3411. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|22283 x 0
  3412. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|22575 x 0
  3413. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12564 x 0
  3414. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|4132 x 0
  3415. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|20844 x 0
  3416. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|22283 x 0
  3417. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12558 x 0
  3418. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12558 x 0
  3419. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12619 x 0
  3420. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|43931 x 0
  3421. GSBenchMark::exprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12625 x 0
  3422. GSBenchMark::GSBenchMark.Dataset.names
    The names of the datasets of gene expressions and phenotypes downloaded from DIRAC paper
    json| rda| rds
    character
  3423. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|22283 x 0
  3424. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|22575 x 0
  3425. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12564 x 0
  3426. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|4132 x 0
  3427. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|20844 x 0
  3428. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|22283 x 0
  3429. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12558 x 0
  3430. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12558 x 0
  3431. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12619 x 0
  3432. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|43931 x 0
  3433. GSBenchMark::logexprsdata
    Gene expression matrix from DIRAC paper
    csv| json| rda| rds
    matrix|12625 x 0
  3434. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3435. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3436. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3437. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3438. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3439. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3440. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3441. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3442. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3443. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3444. GSBenchMark::phenotypes
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    factor
  3445. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3446. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3447. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3448. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3449. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3450. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3451. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3452. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3453. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3454. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3455. GSBenchMark::phenotypesLevels
    A factor for binary phenotypes from DIRAC paper
    json| rda| rds
    character
  3456. GSCA::geneIDdata
    Homologene data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17355 x 5
  3457. GSCA::Oct4ESC_TG
    Oct4 activated (+) and repressed (-) target genes in embryonic stem cells
    json| rda| rds
    list
  3458. GSCA::STAT1_TG
    STAT1 activated (+) target genes defined from experimental ChIP-seq data and literature survey.
    json| rda| rds
    character
  3459. GSEAlens::gsea_pathwaysets_toy
    Toy MSigDB pathway collection (Hallmark + KEGG_LEGACY)
    json| rda| rds
    list
  3460. GSEAlens::gsea_pathwaysets_toy_hallmark
    Toy MSigDB pathway collection (Hallmark only)
    json| rda| rds
    list
  3461. GSEAlens::precomputed_gseares
    Pre-computed GSEA results from the airway dataset
    rda| rds
    GseaRes
  3462. GSEAlens::preprocessed_dds
    Pre-computed DESeq2 DESeqDataSet from the airway dataset
    rda| rds
    DESeqDataSet
  3463. GSEAlens::preprocessed_dds_se
    Pre-computed DESeqDataSet (SummarizedExperiment form)
    rda| rds
    DESeqDataSet
  3464. GSEAlens::preprocessed_limma
    Pre-computed limma-voom fit and DGEList from the airway dataset
    json| rda| rds
    list
  3465. GSEAmining::genesets_sel
    Selected gene sets as test
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52 x 4
  3466. gsean::GO_dme
    Gene Ontology terms with gene ID for Drosophila melanogaster
    json| rda| rds
    list
  3467. gsean::KEGG_hsa
    KEGG pathways with gene symbol for human
    json| rda| rds
    list
  3468. GSReg::geneExrsGSReg
    csv| json| rda| rds
    matrix|20 x 50
  3469. GSReg::junc.RPM.Simulated
    csv| json| rda| rds
    matrix|242 x 50
  3470. GSReg::phenotypes
    json| rda| rds
    factor
  3471. GSVAdata::annotEntrez220212
    Annotation data on gene length and G+C content from NCBI
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23662 x 2
  3472. GSVAdata::brainTxDbSets
    Gene sets signatures of brain cell types
    json| rda| rds
    list
  3473. GSVAdata::c2BroadSets
    C2 collection of canonical pathways from MSigDB 3.0
    rda| rds
    GeneSetCollection
  3474. GSVAdata::gbm_eset
    Glioblastoma Multiforme (GBM) Data by Verhaak et al. (2010)
    rda| rds
    ExpressionSet
  3475. GSVAdata::geneExpCostaEtAl2021
    RNA-seq Data by Costa et al. (2021)
    rda| rds
    SummarizedExperiment
  3476. GSVAdata::huangArrayRMAnoBatchCommon_eset
    Matching microarray and RNA-seq data from human lymphoblastoid cell lines
    rda| rds
    ExpressionSet
  3477. GSVAdata::msYgenesEntrez
    Entrez genes with documented sex-specific expression
    json| rda| rds
    character
  3478. GSVAdata::pickrellCountsArgonneCQNcommon_eset
    Matching microarray and RNA-seq data from human lymphoblastoid cell lines
    rda| rds
    ExpressionSet
  3479. GSVAdata::pickrellCountsYaleCQNcommon_eset
    Matching microarray and RNA-seq data from human lymphoblastoid cell lines
    rda| rds
    ExpressionSet
  3480. GSVAdata::protExpCostaEtAl2021
    RNA-seq Data by Costa et al. (2021)
    rda| rds
    RangedSummarizedExperiment
  3481. GSVAdata::XiEgenesEntrez
    Entrez genes with documented sex-specific expression
    json| rda| rds
    character
  3482. GUIDEseq::peaks.gr
    example cleavage sites
    rda| rds
    GRanges
  3483. GUIDEseq::uniqueCleavageEvents
    example unique cleavage sites
    rda| rds
    list
  3484. gVenn::a549_chipseq_peaks
    A549 ChIP-seq Consensus Peak Subsets (Dex, chr7)
    rda| rds
    CompressedGRangesList
  3485. gVenn::gene_list
    Example Gene Lists with Overlaps
    json| rda| rds
    list
  3486. Gviz::axTrack
    Data sets
    rda| rds
    GenomeAxisTrack
  3487. Gviz::biomTrack
    Data sets
    rda| rds
    BiomartGeneRegionTrack
  3488. Gviz::biomTrack
    Data sets
    rda| rds
    BiomartGeneRegionTrack
  3489. Gviz::bmt
    Data sets
    rda| rds
    BiomartGeneRegionTrack
  3490. Gviz::bmTrack
    Data sets
    rda| rds
    BiomartGeneRegionTrack
  3491. Gviz::conservation
    Data sets
    rda| rds
    DataTrack
  3492. Gviz::cpgIslands
    Data sets
    rda| rds
    GRanges
  3493. Gviz::cpgIslands
    Data sets
    rda| rds
    AnnotationTrack
  3494. Gviz::ctrack
    Data sets
    rda| rds
    AnnotationTrack
  3495. Gviz::cyp2b10
    Data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 10
  3496. Gviz::denseAnnTrack
    Data sets
    rda| rds
    AnnotationTrack
  3497. Gviz::dtHoriz
    Data sets
    rda| rds
    DataTrack
  3498. Gviz::ensGenes
    Data sets
    rda| rds
    GeneRegionTrack
  3499. Gviz::from
    Data sets
    json| rda| rds
    numeric
  3500. Gviz::gcContent
    Data sets
    rda| rds
    DataTrack
  3501. Gviz::geneDetails
    Data sets
    rda| rds
    GRanges
  3502. Gviz::geneModels
    Data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|57 x 10
  3503. Gviz::ideoTrack
    Data sets
    rda| rds
    IdeogramTrack
  3504. Gviz::idTrack
    Data sets
    rda| rds
    IdeogramTrack
  3505. Gviz::idxTrack
    Data sets
    rda| rds
    IdeogramTrack
  3506. Gviz::itrack
    Data sets
    rda| rds
    IdeogramTrack
  3507. Gviz::knownGenes
    Data sets
    rda| rds
    GeneRegionTrack
  3508. Gviz::refGenes
    Data sets
    rda| rds
    GeneRegionTrack
  3509. Gviz::snpLocations
    Data sets
    rda| rds
    AnnotationTrack
  3510. Gviz::to
    Data sets
    json| rda| rds
    numeric
  3511. Gviz::twoGroups
    Data sets
    rda| rds
    GRanges
  3512. GWAS.BAYES::kinship
    A. Thaliana Kinship matrix
    csv| json| rda| rds
    matrix|328 x 328
  3513. GWAS.BAYES::SNPs
    A. Thaliana Genotype matrix
    csv| json| rda| rds
    matrix|328 x 9000
  3514. GWAS.BAYES::Y
    A. Thaliana Simulated Phenotype matrix
    json| rda| rds
    numeric
  3515. gwascat::ebicat_2020_04_30
    serialized gwaswloc instance from april 30 2020, sample of 50000 records
    rda| rds
    gwaswloc
  3516. gwascat::efo.obo.g
    convert a typical OBO text file to a graphNEL instance (using Term elements)
    rda| rds
    graphNEL
  3517. gwascat::g17SM
    SnpMatrix instance from chr17
    rda| rds
    SnpMatrix|90 x 89701
  3518. gwascat::gg17N
    genotype matrix from chr17 1000 genomes
    csv| json| rda| rds
    matrix|90 x 87957
  3519. gwascat::gr6.0_hg38
    image of locon6 in GRanges, lifted over to hg38
    rda| rds
    GRanges
  3520. gwascat::gw6.rs_17
    character vector of rs numbers for SNP on chr17
    json| rda| rds
    character
  3521. gwascat::gwastagger
    GRanges with LD information on 9998 SNP
    rda| rds
    GRanges
  3522. gwascat::locon6
    location data for 10000 SNP
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10000 x 3
  3523. gwascat::low17
    SnpMatrix instance from chr17
    rda| rds
    SnpMatrix|60 x 196327
  3524. gwascat::si.hs.37
    Seqinfo for GRCh37
    rda| rds
    Seqinfo
  3525. gwascat::si.hs.38
    Seqinfo for GRCh38
    rda| rds
    Seqinfo
  3526. GWASdata::affy_scan_annot
    Data used in the examples and vignettes of the GWASTools package.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47 x 13
  3527. GWASdata::affy_snp_annot
    Data used in the examples and vignettes of the GWASTools package.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3300 x 5
  3528. GWASdata::affyScanADF
    Data used in the examples and vignettes of the GWASTools package.
    rda| rds
    ScanAnnotationDataFrame
  3529. GWASdata::affySnpADF
    Data used in the examples and vignettes of the GWASTools package.
    rda| rds
    SnpAnnotationDataFrame
  3530. GWASdata::illumina_scan_annot
    Data used in the examples and vignettes of the GWASTools package.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|77 x 13
  3531. GWASdata::illumina_snp_annot
    Data used in the examples and vignettes of the GWASTools package.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3300 x 14
  3532. GWASdata::illuminaScanADF
    Data used in the examples and vignettes of the GWASTools package.
    rda| rds
    ScanAnnotationDataFrame
  3533. GWASdata::illuminaSnpADF
    Data used in the examples and vignettes of the GWASTools package.
    rda| rds
    SnpAnnotationDataFrame
  3534. GWASTools::centromeres.hg18
    Centromere base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  3535. GWASTools::centromeres.hg19
    Centromere base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  3536. GWASTools::centromeres.hg38
    Centromere base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  3537. GWASTools::HLA.hg18
    HLA region base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 3
  3538. GWASTools::HLA.hg19
    HLA region base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 3
  3539. GWASTools::HLA.hg38
    HLA region base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 3
  3540. GWASTools::pcaSnpFilters.hg18
    Regions of SNP-PC correlation to filter for Principal Component Analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 4
  3541. GWASTools::pcaSnpFilters.hg19
    Regions of SNP-PC correlation to filter for Principal Component Analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 4
  3542. GWASTools::pcaSnpFilters.hg38
    Regions of SNP-PC correlation to filter for Principal Component Analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 4
  3543. GWASTools::pseudoautosomal.hg18
    Pseudoautosomal region base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 4
  3544. GWASTools::pseudoautosomal.hg19
    Pseudoautosomal region base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 4
  3545. GWASTools::pseudoautosomal.hg38
    Pseudoautosomal region base positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 4
  3546. GWASTools::relationsMeanVar
    Mean and Variance information for full-sibs, half-sibs, first-cousins
    json| rda| rds
    list
  3547. GWENA::gtex_expr
    Transcriptomic muscle data from GTEx consorsium RNA-seq data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 15000
  3548. GWENA::gtex_traits
    Traits data linked to samples in transcriptomic data from GTEx
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 4
  3549. GWENA::kuehne_expr
    Transcriptomic data from the Kuehne et al. publication
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 15801
  3550. GWENA::kuehne_traits
    Traits data linked to samples in transcriptomic data from the Kuehne et al. publication
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 5
  3551. h5vc::bases
    Mutation spectrum analyses
    json| rda| rds
    character
  3552. h5vcData::variantCalls
    Example data for the 'h5vc' package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|105 x 14
  3553. hapFabia::chr1ASW1000G
    Example genotype data in 'vcf' format
    json| rda| rds
    character
  3554. hapFabia::hapRes
    Example result of 'hapFabia'
    rda| rds
    list
  3555. hapFabia::mergedIBDsegmentList
    Example IBD segment list as a result of 'hapFabia'
    rda| rds
    IBDsegmentList
  3556. hapFabia::res
    Example result of 'spfabia'
    rda| rds
    Factorization
  3557. hapFabia::simu
    Example simulation data for 'hapFabia'
    json| rda| rds
    list
  3558. hapmapsnp6::crlmmResult
    Results for crlmm on 90 CEU HapMap samples
    rda| rds
    SnpSet
  3559. harbChIP::harbChIP
    Experimental Data Package: harbChIP
    rda| rds
    ExpressionSet
  3560. harbChIP::sceUpstr
    Biostrings representations of S. cerevisiae upstream regions
    rda| rds
    upstreamSeqs
  3561. HarmanData::episcope
    Infinium Methylation BeadChip batch correction reference data
    json| rda| rds
    list
  3562. HarmanData::imr90.data
    IMR90 data, a Human lung fibroblast cell line.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22223 x 12
  3563. HarmanData::imr90.info
    IMR90 data, a Human lung fibroblast cell line.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 2
  3564. HarmanData::lvr.combat
    Infinium Methylation BeadChip batch correction reference data
    csv| json| rda| rds
    matrix|899255 x 5
  3565. HarmanData::lvr.harman
    Infinium Methylation BeadChip batch correction reference data
    csv| json| rda| rds
    matrix|899255 x 5
  3566. HarmanData::md.combat
    Infinium Methylation BeadChip batch correction reference data
    csv| json| rda| rds
    matrix|899255 x 5
  3567. HarmanData::md.harman
    Infinium Methylation BeadChip batch correction reference data
    csv| json| rda| rds
    matrix|899255 x 5
  3568. HarmanData::npm.data
    Non-pregant mice study data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35512 x 24
  3569. HarmanData::npm.info
    Non-pregant mice study data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 2
  3570. HarmanData::olf.data
    Olfactory stem cell study data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33297 x 28
  3571. HarmanData::olf.info
    Olfactory stem cell study data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28 x 2
  3572. HarmonizedTCGAData::project_ids
    project_ids
    json| rda| rds
    character
  3573. HarmonizedTCGAData::surv.plot
    surv.plot
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12899 x 4
  3574. HCATonsilData::annotations_dictionary
    Annotation dictionary to keep track of annotations changes and versions
    json| rda| rds
    list
  3575. HCATonsilData::colors_20230508
    Color palettes
    json| rda| rds
    list
  3576. HCATonsilData::donor_metadata
    Donor metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 8
  3577. HCATonsilData::NBC_MBC_annotation_df
    Annotation dictionary for naive and memory B cells (NBC-MBC)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|112478 x 5
  3578. HDTD::VEGFmouse
    Vascular Endothelial Growth Factor Mouse Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46 x 0
  3579. hdxmsqc::BRD4df
    This is data to be included in my package
    rda| rds
    QFeatures
  3580. hdxmsqc::BRD4df_full
    This is data to be included in my package
    rda| rds
    QFeatures
  3581. healthyFlowData::hd.flowSet
    Healthy donor (HD) dataset
    rda| rds
    flowSet
  3582. heatmaps::hm
    Data for man page examples
    rda| rds
    Heatmap
  3583. heatmaps::hm2
    Data for man page examples
    rda| rds
    Heatmap
  3584. heatmaps::mat
    Data for man page examples
    csv| json| rda| rds
    matrix|500 x 200
  3585. heatmaps::rle_list
    Data for man page examples
    rda| rds
    CompressedRleList
  3586. heatmaps::string_set
    Data for man page examples
    rda| rds
    DNAStringSet
  3587. heatmaps::tata_pwm
    Data for man page examples
    csv| json| rda| rds
    matrix|4 x 0
  3588. heatmaps::windows
    Data for man page examples
    rda| rds
    GRanges
  3589. HEEBOdata::HEEBOctrl
    Annotations and controls for the HEEBO set.
    json| rda| rds
    list
  3590. HEEBOdata::HEEBOset
    Annotations and controls for the HEEBO set.
    csv| json| rda| rds
    matrix|49152 x 12
  3591. HEEBOdata::HEEBOtilingres
    Annotations and controls for the HEEBO set.
    json| rda| rds
    list
  3592. HELP::base.stacking.thermodynamics
    Base-stacking thermodynamic parameters
    csv| json| rda| rds
    matrix|16 x 2
  3593. HEM::mubcp
    Gene expression data for mouse B cell development
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 26
  3594. HEM::pbrain
    Gene expression data for primate brains
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 13
  3595. hermes::expression_set
    Example 'ExpressionSet' Data
    rda| rds
    ExpressionSet
  3596. hermes::hermes_data
    Example 'HermesData' Data
    rda| rds
    HermesData
  3597. hermes::multi_assay_experiment
    Example 'MultiAssayExperiment' Data
    rda| rds
    MultiAssayExperiment
  3598. hermes::summarized_experiment
    Example 'SummarizedExperiment' Data
    rda| rds
    SummarizedExperiment
  3599. HERON::heffron2021_wuhan
    SARS CoV-2 Wuhan Peptide Binding Array Data
    rda| rds
    HERONSequenceDataSet
  3600. HGC::Pollen
    Embeddings of the Pollen datasets in the principal component space.
    json| rda| rds
    list
  3601. hgu133abarcodevecs::bcparams
    hgu133a data for barcode
    csv| json| rda| rds
    matrix|22215 x 0
  3602. hgu133plus2barcodevecs::bcparams
    hgu133plus2 data for barcode
    csv| json| rda| rds
    matrix|54613 x 0
  3603. hgu133plus2CellScore::eset.std
    Standard Samples for CellScore [hgu133plus2]
    rda| rds
    ExpressionSet
  3604. hgu2beta7::hgu2beta7ACCNUM
    Mappings between probe identifiers and manufacturer or user provided identifiers
    rda| rds
    environment
  3605. hgu2beta7::hgu2beta7CHR
    Mappings between probe identifiers and the chromosome numbers the genes represented by the probe ids reside
    rda| rds
    environment
  3606. hgu2beta7::hgu2beta7CHRLENGTHS
    A named vector for the length of each of the chromosomes
    json| rda| rds
    numeric
  3607. hgu2beta7::hgu2beta7CHRLOC
    Mappings between probe identifiers and the chromosomal locations of the genes represented by the probe identifiers
    rda| rds
    environment
  3608. hgu2beta7::hgu2beta7ENZYME
    Mappings between probe identifiers and the enzyme commission numbers, to which the products of the genes represented by the probe ids correspond
    rda| rds
    environment
  3609. hgu2beta7::hgu2beta7ENZYME2PROBE
    Mappings between Enzyme Commission numbers and probe identifiers
    rda| rds
    environment
  3610. hgu2beta7::hgu2beta7GENENAME
    Mappings between probe identifiers and the names of genes the probe ids correspond to
    rda| rds
    environment
  3611. hgu2beta7::hgu2beta7GO
    Mappings between probe identifiers and Gene Ontology information
    rda| rds
    environment
  3612. hgu2beta7::hgu2beta7GO2ALLPROBES
    Mappings between GO identifiers and all the probe idifiers representing genes associated with the GO ids
    rda| rds
    environment
  3613. hgu2beta7::hgu2beta7GO2PROBE
    Mappings between GO identifiers and probe identifiers representing genes that are directly associated with the GO ids
    rda| rds
    environment
  3614. hgu2beta7::hgu2beta7GRIF
    Mappings between probe identifiers and the PubMed identifiers for the publication where functional annotation of genes corresponding to the probe ids were made
    rda| rds
    environment
  3615. hgu2beta7::hgu2beta7LOCUSID
    Mappings between probe identifiers and LocusLink identifiers
    rda| rds
    environment
  3616. hgu2beta7::hgu2beta7MAP
    Mappings between probe identifiers and cytogenetic maps/bands
    rda| rds
    environment
  3617. hgu2beta7::hgu2beta7MAPCOUNTS
    Quality control information for hgu2beta7
    json| rda| rds
    numeric
  3618. hgu2beta7::hgu2beta7OMIM
    Mappings between probe identifiers and Mendelian Inheritance in Man (MIM) identifiers
    rda| rds
    environment
  3619. hgu2beta7::hgu2beta7ORGANISM
    A character string for the name of the organism
    json| rda| rds
    character
  3620. hgu2beta7::hgu2beta7PATH
    Mappings between probe identifiers and KEGG pathway identifiers
    rda| rds
    environment
  3621. hgu2beta7::hgu2beta7PATH2PROBE
    Mappings between KEGG pathway identifiers and probe identifiers
    rda| rds
    environment
  3622. hgu2beta7::hgu2beta7PMID
    Mappings between probe identifiers and PubMed identifiers
    rda| rds
    environment
  3623. hgu2beta7::hgu2beta7PMID2PROBE
    Mappings between PubMed identifiers and probe identifiers
    rda| rds
    environment
  3624. hgu2beta7::hgu2beta7QC
    Quality control information for hgu2beta7
    json| rda| rds
    character
  3625. hgu2beta7::hgu2beta7REFSEQ
    Mappings between probe identifiers and RefSeq identifiers
    rda| rds
    environment
  3626. hgu2beta7::hgu2beta7SUMFUNC
    Mappings between probe identifiers and summaries of the functions of genes represented by the probe identifiers
    rda| rds
    environment
  3627. hgu2beta7::hgu2beta7SYMBOL
    Mappings between probe identifiers and gene symbols
    rda| rds
    environment
  3628. hgu2beta7::hgu2beta7UNIGENE
    Mappings between probe identifiers and UniGene cluster identifiers
    rda| rds
    environment
  3629. HIBAG::HapMap_CEU_Geno
    SNP genotypes of a study simulated from HapMap CEU genotypic data
    rda| rds
    hlaSNPGenoClass
  3630. HIBAG::HLA_Type_Table
    Four-digit HLA types of a study simulated from HapMap CEU
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 13
  3631. HiBED::HiBED_Libraries
    HiBED library CpGs matrix stored in SummarizedExperiment for brain tissue DNA methylation deconvolution
    rda| rds
    list
  3632. HicAggR::Beaf32_Peaks.gnr
    D.melanogaster Beaf-32 ChIP-seq.
    rda| rds
    GRanges
  3633. HicAggR::HiC_Ctrl.cmx_lst
    In situ Hi-C control.
    rda| rds
    list
  3634. HicAggR::HiC_HS.cmx_lst
    In situ Hi-C heat treated.
    rda| rds
    list
  3635. HicAggR::TADs_Domains.gnr
    D.melanogaster TADs.
    rda| rds
    GRanges
  3636. HicAggR::TSS_Peaks.gnr
    D.melanogaster Transcription starting sites.
    rda| rds
    GRanges
  3637. HiCcompare::brain_table
    Hi-C data from two regions of the brain at 100KB resolution
    csv| json| rda| rds
    list
  3638. HiCcompare::centromere_locations
    Locations of the centromeres for hg19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 3
  3639. HiCcompare::cooler
    Hi-C data in the cooler format
    csv| xlsx| json| ndjson| rda| rds
    data.frame|217230 x 7
  3640. HiCcompare::hg19_blacklist
    BED file for hg19 blacklisted regions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1649 x 3
  3641. HiCcompare::hg38_blacklist
    BED file for hg38 blacklisted regions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38 x 3
  3642. HiCcompare::HMEC.chr10
    Hi-C data from HMEC cell line - chromosome 10 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35386 x 3
  3643. HiCcompare::HMEC.chr22
    Hi-C data from HMEC cell line - chromosome 22 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2490 x 3
  3644. HiCcompare::hmec.IS
    Hi-C data from HMEC cell line - chromosome 22 at 500kb resolution
    rda| rds
    GInteractions
  3645. HiCcompare::NHEK.chr10
    Hi-C data from NHEK cell line - chromosome 10 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35510 x 3
  3646. HiCcompare::NHEK.chr22
    Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2508 x 3
  3647. HiCcompare::nhek.IS
    Hi-C data from NHEK cell line - chromosome 22 at 500kb resolution
    rda| rds
    GInteractions
  3648. HiCDOC::exampleHiCDOCDataSet
    Example HiCDOCDataSet.
    rda| rds
    HiCDOCDataSet
  3649. HiCDOC::exampleHiCDOCDataSetProcessed
    Example HiCDOCDataSet, filtered, normalized and with compartements detected.
    rda| rds
    HiCDOCDataSet
  3650. HiCExperiment::centros_yeast
    Example datasets provided in 'HiCExperiment' & 'HiContactsData'
    rda| rds
    GRanges
  3651. hierGWAS::simGWAS
    Simulated GWAS data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 1003
  3652. hierinf::simGWAS
    Simulated GWAS data set
    json| rda| rds
    list
  3653. Hiiragi2013::x
    Normalized Microarray Data
    rda| rds
    ExpressionSet
  3654. Hiiragi2013::xq
    qPCR Gene Expression
    rda| rds
    ExpressionSet
  3655. Hiiragi2013::xql
    Position-dependent Gene Expression
    rda| rds
    ExpressionSet
  3656. hipathia::brca
    BRCA gene expression dataset as SummarizedExperiment
    rda| rds
    SummarizedExperiment
  3657. hipathia::brca_data
    BRCA gene expression dataset
    csv| json| rda| rds
    matrix|3187 x 40
  3658. hipathia::brca_design
    BRCA experimental design
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 1
  3659. hipathia::comp
    Wilcoxon comparison of pathways object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 5
  3660. hipathia::DAdata
    Wilcoxon and limma comparison object for nodes, pathways and functional annotations
    json| rda| rds
    list
  3661. hipathia::exp_data
    Normalized BRCA gene expression dataset
    rda| rds
    SummarizedExperiment
  3662. hipathia::go_vals
    Gene Ontology matrix of the BRCA gene expression dataset
    rda| rds
    SummarizedExperiment
  3663. hipathia::hidata
    Results object
    rda| rds
    MultiAssayExperiment
  3664. hipathia::path_vals
    Pathways matrix of the BRCA gene expression dataset
    rda| rds
    SummarizedExperiment
  3665. hipathia::pathways
    Pathways object including pathways has03320 and hsa04012.
    rda| rds
    list
  3666. hipathia::results
    Results object
    rda| rds
    MultiAssayExperiment
  3667. HIPPO::ensg_hgnc
    A reference data frame that matches ENSG IDs to HGNC symbols
    csv| xlsx| json| ndjson| rda| rds
    data.frame|46606 x 2
  3668. HIPPO::toydata
    A sample single cell sequencing data subsetted from Zheng2017
    rda| rds
    SingleCellExperiment
  3669. HiSpaR::su1_contact_mat
    Example Hi-C Contact Matrix
    csv| json| rda| rds
    matrix|649 x 649
  3670. HIVcDNAvantWout03::hiv1raw
    T cell line infections with HIV-1 LAI (BRU)
    json| rda| rds
    numeric
  3671. HIVcDNAvantWout03::hiv2raw
    T cell line infections with HIV-1 LAI (BRU)
    json| rda| rds
    numeric
  3672. HMMcopy::normal_copy
    HMMcopy example dataset
    csv| xlsx| json| ndjson| rda| rds
    data.table|4273 x 12
  3673. HMMcopy::tumour_copy
    HMMcopy example dataset
    csv| xlsx| json| ndjson| rda| rds
    data.table|4273 x 12
  3674. HMMcopy::tumour_param
    HMMcopy example dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 10
  3675. HMMcopy::tumour_reads
    HMMcopy example dataset
    csv| xlsx| json| ndjson| rda| rds
    data.table|4273 x 7
  3676. HMMcopy::tumour_segments
    HMMcopy example dataset
    json| rda| rds
    list
  3677. HMP16SData::dictionary
    A data dictionary describing dbGaP metadata variables
    csv| xlsx| json| ndjson| rda| rds
    data.frame|789 x 8
  3678. hoodscanR::spe
    Example test spatial transcriptomics data
    rda| rds
    SpatialExperiment
  3679. hopach::golub
    Gene expression dataset from Golub et al. (1999)
    csv| json| rda| rds
    matrix|3051 x 0
  3680. hopach::golub.cl
    Gene expression dataset from Golub et al. (1999)
    json| rda| rds
    numeric
  3681. hopach::golub.gnames
    Gene expression dataset from Golub et al. (1999)
    csv| json| rda| rds
    matrix|3051 x 0
  3682. HPAanalyze::hpa_histology_data
    HPA histology dataset
    json| rda| rds
    list
  3683. HPiP::enrich.df
    Enrichment Result
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 17
  3684. HPiP::example_data
    Input Data for Prediction Algorithm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 100
  3685. HPiP::Gold_ReferenceSet
    Gold-standard Reference Set of Inter-Species PPIs
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 6
  3686. HPiP::host_se
    Host SummarizedExperiment object
    rda| rds
    SummarizedExperiment
  3687. HPiP::predicted_PPIs
    Predicted HP-PPIs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|53 x 2
  3688. HPiP::unlabel_data
    HP-PPIs with Unknown Class Labels
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 0
  3689. HPiP::UP000464024_df
    Data.frame Containing SARS-CoV-2 FASTA Sequences
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 2
  3690. HPiP::viral_se
    Viral SummarizedExperiment object
    rda| rds
    SummarizedExperiment
  3691. HSMMSingleCell::HSMM_expr_matrix
    csv| json| rda| rds
    matrix|47192 x 0
  3692. HSMMSingleCell::HSMM_gene_annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47192 x 4
  3693. HSMMSingleCell::HSMM_sample_sheet
    csv| xlsx| json| ndjson| rda| rds
    data.frame|271 x 7
  3694. HTqPCR::qPCRpros
    Example processed qPCR data
    rda| rds
    qPCRset
  3695. HTqPCR::qPCRraw
    Example raw qPCR data.
    rda| rds
    qPCRset
  3696. HTSFilter::sultan
    RNA-seq data from humans in Sultan et al. (2008)
    rda| rds
    ExpressionSet
  3697. humanStemCell::fhesc
    Data from a simple experiment on Human stem cells.
    rda| rds
    ExpressionSet
  3698. hummingbird::abnormM
    Sample matrix
    csv| json| rda| rds
    matrix|4746 x 0
  3699. hummingbird::abnormUM
    Sample matrix
    csv| json| rda| rds
    matrix|4746 x 0
  3700. hummingbird::exampleSECase
    Sample input data
    rda| rds
    RangedSummarizedExperiment
  3701. hummingbird::exampleSEControl
    Sample input data
    rda| rds
    RangedSummarizedExperiment
  3702. hummingbird::normM
    Sample matrix
    csv| json| rda| rds
    matrix|4746 x 0
  3703. hummingbird::normUM
    Sample matrix
    csv| json| rda| rds
    matrix|4746 x 0
  3704. hummingbird::pos
    Sample matrix
    csv| json| rda| rds
    matrix|4746 x 0
  3705. HybridExpress::deg_counts
    Data frame with frequencies (absolute and relative) of DEGs per contrast
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 7
  3706. HybridExpress::deg_list
    List of differentially expressed genes for all contrasts
    csv| json| rda| rds
    list
  3707. HybridExpress::go_chlamy
    Data frame with GO terms annotated to each gene of Chlamydomonas reinhardtii
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34680 x 2
  3708. HybridExpress::se_chlamy
    Expression data (in counts) for 3 Chlamydomonas lines (P1, P2, and F1)
    rda| rds
    SummarizedExperiment
  3709. HybridMTest::correlation.data
    Sample ExpressionSet object of correlation.data
    rda| rds
    ExpressionSet
  3710. HybridMTest::GroupComp.data
    Sample ExpressionSet of GroupComp.data
    rda| rds
    ExpressionSet
  3711. hypeR::limma
    Differential Expression
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9682 x 5
  3712. hypeR::wgcna
    Co-expression Modules
    json| rda| rds
    list
  3713. iASeq::sampleASE_exprs
    Example Dataset for iASeq
    csv| json| rda| rds
    matrix|5504 x 20
  3714. iASeq::sampleASE_refid
    Example Dataset for iASeq
    json| rda| rds
    integer
  3715. iASeq::sampleASE_repid
    Example Dataset for iASeq
    json| rda| rds
    integer
  3716. iASeq::sampleASE_studyid
    Example Dataset for iASeq
    json| rda| rds
    integer
  3717. Ibex::ibex_example
    A SingleCellExperiment object with 200 randomly-sampled B cells with BCR sequences from the 10x Genomics 2k_BEAM-Ab_Mouse_HEL_5pv2 dataset.
    rda| rds
    SingleCellExperiment
  3718. Ibex::ibex_vdj
    Full filtered_annotated_contig.csv from the 10x 2k_BEAM-Ab_Mouse_HEL_5pv2
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3659 x 31
  3719. iBMQ::gene
    Gene expression from whole eye tissue from n = 68 BXD RIS mice.
    rda| rds
    ExpressionSet
  3720. iBMQ::genepos
    Gene position data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 4
  3721. iBMQ::genotype.liver
    A set of 290 SNPs from 60 F2 mice.
    rda| rds
    SnpSet
  3722. iBMQ::map.liver
    SNP position data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|290 x 3
  3723. iBMQ::phenotype.liver
    Gene expression from liver tissue from n = 60 F2 mice.
    rda| rds
    ExpressionSet
  3724. iBMQ::PPA.liver
    A matrix with Posterior Probabilities of Association
    csv| json| rda| rds
    matrix|290 x 5000
  3725. iBMQ::probe.liver
    Gene position data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4427 x 4
  3726. iBMQ::snp
    A set of 1700 SNP from 68 BXD RIS mice.
    rda| rds
    SnpSet
  3727. iBMQ::snppos
    SNP position data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1700 x 3
  3728. iCARE::bc_72_snps
    Data for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|72 x 3
  3729. iCARE::bc_inc
    Data for examples
    csv| json| rda| rds
    matrix|86 x 0
  3730. iCARE::bc_model_cov_info
    Data for examples
    json| rda| rds
    list
  3731. iCARE::bc_model_formula
    Data for examples
    rda| rds
    formula
  3732. iCARE::bc_model_log_or
    Data for examples
    json| rda| rds
    numeric
  3733. iCARE::bc_model_log_or_post_50
    Data for examples
    json| rda| rds
    numeric
  3734. iCARE::mort_inc
    Data for examples
    csv| json| rda| rds
    matrix|101 x 0
  3735. iCARE::new_cov_prof
    Data for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 13
  3736. iCARE::new_snp_prof
    Data for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 72
  3737. iCARE::output
    Data for examples
    rda| rds
    icare
  3738. iCARE::ref_cov_dat
    Data for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14137 x 13
  3739. iCARE::ref_cov_dat_post_50
    Data for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14137 x 13
  3740. iCARE::validation.cohort.data
    Data for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 20
  3741. iCARE::validation.nested.case.control.data
    Data for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5285 x 92
  3742. Icens::cmv
    Data on times to shedding of cytomegalovirus and to colonization of mycobacterium avium complex.
    csv| json| rda| rds
    matrix|204 x 4
  3743. Icens::cosmesis
    The time taken until cosmetic deterioration of breast cosmesis.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|94 x 3
  3744. Icens::hiv
    Intervals for infection time and disease onset for 257 hemophiliac patients.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|257 x 6
  3745. Icens::pruitt
    A small artificial, bivariate right-censored data set.
    csv| json| rda| rds
    matrix|7 x 8
  3746. iChip::oct4
    Oct4 data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12584 x 6
  3747. iChip::p53
    p53 data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10000 x 14
  3748. iCNV::filenm
    Name of the file
    json| rda| rds
    character
  3749. iCNV::icnv_res0
    Example iCNV calling results.
    json| rda| rds
    list
  3750. iCNV::ngs_baf
    BAF list from NGS
    json| rda| rds
    list
  3751. iCNV::ngs_baf.chr
    BAF chromosome from NGS
    json| rda| rds
    list
  3752. iCNV::ngs_baf.id
    BAF variants id from NGS
    json| rda| rds
    list
  3753. iCNV::ngs_baf.nm
    BAF variants sample name from NGS
    csv| json| rda| rds
    list
  3754. iCNV::ngs_baf.pos
    BAF position list from NGS
    json| rda| rds
    list
  3755. iCNV::ngs_plr
    Normalized Poisson likelihood ratio list from NGS
    csv| json| rda| rds
    list
  3756. iCNV::ngs_plr.pos
    Exon location list from NGS
    csv| json| rda| rds
    list
  3757. iCNV::normObj
    Demo data pre-stored for normObj.
    csv| json| rda| rds
    list
  3758. iCNV::qcObj
    Demo data pre-stored for qcObj.
    rda| rds
    list
  3759. iCNV::sampname
    CODEX sample name
    csv| json| rda| rds
    matrix|46 x 1
  3760. iCNV::sampname_qc
    QCed sample name
    json| rda| rds
    character
  3761. iCNV::snp_baf
    BAF list from Array
    csv| json| rda| rds
    list
  3762. iCNV::snp_baf.pos
    BAF position list from Array
    csv| json| rda| rds
    list
  3763. iCNV::snp_lrr
    Normalized log R ratio list from Array
    csv| json| rda| rds
    list
  3764. iCNV::snp_lrr.pos
    SNP position list from Array
    csv| json| rda| rds
    list
  3765. iCOBRA::cobradata_example
    Example data set with three differential gene expression methods
    rda| rds
    COBRAData
  3766. iCOBRA::cobradata_example_sval
    Example data set with three differential gene expression methods
    rda| rds
    COBRAData
  3767. IdeoViz::binned_fullGenome
    Data for example 3.
    rda| rds
    GRanges
  3768. IdeoViz::binned_multiSeries
    Data for vignette example 1.
    rda| rds
    GRanges
  3769. IdeoViz::binned_singleSeries
    Data for example 2.
    rda| rds
    GRanges
  3770. IdeoViz::GSM733664_broadPeaks
    Data for vignette example 4.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14825 x 9
  3771. IdeoViz::hg18_ideo
    Ideogram table for hg18
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  3772. IdeoViz::wins
    Data for vignette example 1.
    rda| rds
    GRanges
  3773. IdeoViz::wins
    Data for vignette example 1.
    rda| rds
    GRanges
  3774. IdeoViz::wins_discrete
    Data for example 2.
    rda| rds
    GRanges
  3775. IdeoViz::wins_discrete
    Data for example 2.
    rda| rds
    GRanges
  3776. IdeoViz::wins_entiregenome
    Data for example 3.
    rda| rds
    GRanges
  3777. IdeoViz::wins_entiregenome
    Data for example 3.
    rda| rds
    GRanges
  3778. idiogram::Cf.cytoband
    Cytogenetic Banding information
    rda| rds
    environment
  3779. idiogram::colo.eset
    data included for idiogram package examples
    csv| json| rda| rds
    matrix|2031 x 15
  3780. idiogram::Hs.cytoband
    Cytogenetic Banding information
    rda| rds
    environment
  3781. idiogram::Mm.cytoband
    Cytogenetic Banding information
    rda| rds
    environment
  3782. idiogram::Rn.cytoband
    Cytogenetic Banding information
    rda| rds
    environment
  3783. idiogram::ucsf.chr
    data included for idiogram package examples
    rda| rds
    chromLocation
  3784. idiogram::vai.chr
    data included for idiogram package examples
    rda| rds
    chromLocation
  3785. idpr::Disorder40
    Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3786. idpr::Disorder60
    Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3787. idpr::Disorder85
    Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3788. idpr::DUNMat
    A Substitution Matrix for Aligning Intrinsically Disordered Proteins
    csv| json| rda| rds
    matrix|20 x 20
  3789. idpr::EDSSMat50
    EDSSMat Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3790. idpr::EDSSMat60
    EDSSMat Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3791. idpr::EDSSMat62
    EDSSMat Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3792. idpr::EDSSMat70
    EDSSMat Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3793. idpr::EDSSMat75
    EDSSMat Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3794. idpr::EDSSMat80
    EDSSMat Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3795. idpr::EDSSMat90
    EDSSMat Disorder-based Substitution Matrices.
    csv| json| rda| rds
    matrix|24 x 24
  3796. idpr::GorillaTP53
    Human Cellular tumor antigen p53 and homologs
    json| rda| rds
    character
  3797. idpr::KDNorm
    Kyte and Doolittle Scaled Hydropathy Index
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 2
  3798. idpr::pKaData
    Sets of pKa values for Charged Amino Acids
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|10 x 16
  3799. idpr::TP53Sequences
    Human Cellular tumor antigen p53 and homologs
    json| rda| rds
    character
  3800. idr2d::chiapet
    Example Genomic Interaction Data Set
    csv| json| rda| rds
    list
  3801. idr2d::chipseq
    Example Genomic Peak Data Set
    json| rda| rds
    list
  3802. idr2d::hic
    Example Hi-C data set
    csv| json| rda| rds
    list
  3803. iGC::hg19DBNM
    hg19-RefSeq
    csv| xlsx| json| ndjson| rda| rds
    data.table|39997 x 7
  3804. IgGeneUsage::CDR3_Epitopes
    Net charge usage in CDR3 sequences of T-cell receptor repertoires disturbed by Influenza-A and CMV
    csv| xlsx| json| ndjson| rda| rds
    data.frame|143 x 4
  3805. IgGeneUsage::d_zibb_1
    Simulated Ig gene usage data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|75 x 4
  3806. IgGeneUsage::d_zibb_2
    Simulated Ig gene usage data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|225 x 5
  3807. IgGeneUsage::d_zibb_3
    Simulated Ig gene usage data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|120 x 4
  3808. IgGeneUsage::d_zibb_4
    Simulated Ig gene usage data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|320 x 5
  3809. IgGeneUsage::d_zibb_5
    Simulated Ig gene usage data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|180 x 4
  3810. IgGeneUsage::d_zibb_6
    Simulated Ig gene usage data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1080 x 5
  3811. IgGeneUsage::Ig
    IGHV gene family usage in vaccine-challenged B-cell repertoires
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48 x 4
  3812. IgGeneUsage::Ig_SE
    IGHV gene family usage in vaccine-challenged B-cell repertoires (SummarizedExperiment object)
    rda| rds
    SummarizedExperiment
  3813. IgGeneUsage::IGHV_HCV
    IGHV gene usage in HCV+ and healthy individuals
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2001 x 4
  3814. Illumina450ProbeVariants.db::probe.450K.VCs.af
    HumanMethylation450 variant details
    csv| xlsx| json| ndjson| rda| rds
    data.frame|485512 x 30
  3815. ILoReg::pbmc3k_500
    A toy dataset with 500 cells downsampled from the pbmc3k dataset.
    rda| rds
    dgCMatrix
  3816. IMMAN::Celegance
    Celegance
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49 x 1
  3817. IMMAN::FruitFly
    Fruit Fly
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56 x 1
  3818. IMMAN::H.sapiens
    Homo sapiens (Human)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|76 x 1
  3819. IMMAN::R.norvegicus
    Rattus norvegicus (Rat)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|70 x 1
  3820. immApex::immapex_blosum.pam.matrices
    List of amino acid substitution matrices
    csv| json| rda| rds
    list
  3821. immApex::immapex_example.data
    Example contig data for Apex
    json| rda| rds
    list
  3822. immApex::immapex_gene.list
    A list of IMGT gene names by genes, loci, and species
    json| rda| rds
    list
  3823. immGLIPH::gliph_input_data
    Example TCR input data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|365 x 3
  3824. immGLIPH::gliph_sce
    Example SingleCellExperiment with TCR clonal information
    rda| rds
    SingleCellExperiment
  3825. immGLIPH::gTRB
    Germline TCR-beta CDR3 fragments
    csv| json| rda| rds
    list
  3826. immGLIPH::ref_cluster_sizes
    Cluster size probabilities in naive reference repertoire
    csv| json| rda| rds
    list
  3827. immLynx::immLynx_example
    Example Single-Cell RNA-seq Data with TCR Information
    rda| rds
    SingleCellExperiment
  3828. immunoClust::dat.exp
    immunoClust Meta-clustering Sample
    rda| rds
    list
  3829. immunoClust::dat.fcs
    immunoClust Cell-clustering Sample
    rda| rds
    flowFrame
  3830. immunoClust::dat.meta
    immunoClust Meta-clustering Results Sample
    rda| rds
    immunoMeta
  3831. impute::khanmiss
    Khan microarray data with random missing values
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2309 x 65
  3832. INDEED::Met_Group_GU
    Group label.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 120
  3833. INDEED::Met_GU
    GU cirrhosis (CIRR) and GU Hepatocellular carcinoma (HCC) data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39 x 120
  3834. INDEED::Met_name_GU
    KEGG ID
    csv| json| rda| rds
    matrix|39 x 0
  3835. INDEED::pvalue_M_GU
    P-values obtained by differential expression (DE) analysis.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39 x 2
  3836. iNETgrate::toyCleanedAml
    A subset of cleaned TCGA-LAML data
    json| rda| rds
    list
  3837. iNETgrate::toyComputEloci
    A subset of weighted DNA methylation profile of TCGA-LAML data
    rda| rds
    list
  3838. iNETgrate::toyEigengenes
    A subset of weighted average of gene expression present in each module
    csv| json| rda| rds
    matrix|158 x 4
  3839. iNETgrate::toyRawAml
    A subset of TCGA-LAML data
    rda| rds
    list
  3840. infercnv::HMM_states
    infercnv object result of the processing of run() in the HMM example, to be used for other examples.
    csv| json| rda| rds
    matrix|4613 x 20
  3841. infercnv::infercnv_annots_example
    Generated classification for 10 normal cells and 10 tumor cells.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 1
  3842. infercnv::infercnv_data_example
    Generated SmartSeq2 expression data with 10 normal cells and 10 tumor cells. This is only to demonstrate how to use methods, not actual data to be used in an analysis.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8252 x 20
  3843. infercnv::infercnv_genes_example
    Downsampled gene coordinates file from GrCh37
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10338 x 3
  3844. infercnv::infercnv_object_example
    infercnv object result of the processing of run() in the example, to be used for other examples.
    rda| rds
    infercnv
  3845. infercnv::mcmc_obj
    infercnv object result of the processing of inferCNVBayesNet in the example, to be used for other examples.
    rda| rds
    MCMC_inferCNV
  3846. infinityFlow::steady_state_lung
    Subset of a massively parallel cytometry experiment of mouse lung single cells
    rda| rds
    flowSet
  3847. infinityFlow::steady_state_lung_annotation
    Target and isotypes annotation for the data object infinityFlow::steady_state_lnug
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 2
  3848. infinityFlow::steady_state_lung_backbone_specification
    Backbone and Infinity antibodies specification for the data object infinityFlow::steady_state_lnug
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22 x 3
  3849. InPAS::utr3.mm10
    Annotation of 3' UTRs for mouse (mm10)
    rda| rds
    GRanges
  3850. INSPEcT::allcounts
    A list containing mature and nascent counts for exons and introns, three replicates and 11 time points: 0,1/6,1/3,1/2,1,1.5,2,4,8,12,16 hours.
    csv| json| rda| rds
    list
  3851. INTACT::exprwt_sumstats
    TWAS weights for a simulated gene.
    json| rda| rds
    numeric
  3852. INTACT::gene_set_list
    Simulated gene set list.
    json| rda| rds
    list
  3853. INTACT::ld_sumstats
    LD correlation matrix from a simulated data set.
    csv| json| rda| rds
    matrix|1500 x 0
  3854. INTACT::multi_simdat
    Simulated TWAS, PWAS, and pairwise colocalization summary data.
    csv| xlsx| json| ndjson| rda| rds
    data.table|1197 x 6
  3855. INTACT::protwt_sumstats
    PWAS weights for a simulated gene.
    json| rda| rds
    numeric
  3856. INTACT::simdat
    Simulated TWAS and colocalization summary data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1197 x 3
  3857. INTACT::z_sumstats
    TWAS and PWAS z-score for a simulated gene.
    csv| json| rda| rds
    matrix|2 x 0
  3858. InTAD::enhSel
    Enhancer signals subset detected from medulloblatoma samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|116 x 25
  3859. InTAD::enhSelGR
    Genomic coordiantes of enhancer signals subet
    rda| rds
    GRanges
  3860. InTAD::loopsDfSel
    Data frame containing coordinates of loops
    csv| xlsx| json| ndjson| rda| rds
    data.frame|285 x 10
  3861. InTAD::mbAnnData
    Data frame containing information about samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 5
  3862. InTAD::rpkmCountsSel
    Gene expression subset from medulloblastoma samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2080 x 25
  3863. InTAD::tadGR
    Genomic coordiantes of topologically associated domains
    rda| rds
    GRanges
  3864. InTAD::txsSel
    Genomic coordiantes of genes subset
    rda| rds
    GRanges
  3865. interacCircos::arcExample
    Arc plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 7
  3866. interacCircos::bubbleExample
    Bubble plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|375 x 8
  3867. interacCircos::chord.pExample
    Example data of chord plot of circosJS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 6
  3868. interacCircos::chordExample
    Example data of chord plot of NG-Circos
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 20
  3869. interacCircos::cnvExample
    Cnv module example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|198 x 7
  3870. interacCircos::geneExample
    Gene plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 8
  3871. interacCircos::heatmapExample
    Heatmap plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|375 x 7
  3872. interacCircos::hg19_ideogram
    Ideogram for hg19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 4
  3873. interacCircos::histogramExample
    Histogram plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|125 x 7
  3874. interacCircos::lineExample
    Line plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|497 x 5
  3875. interacCircos::linkExample
    Link plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 11
  3876. interacCircos::lollipopExample
    Lollipop plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|120 x 12
  3877. interacCircos::scatterExample
    Scatter plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1438 x 7
  3878. interacCircos::snpExample
    Snp plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|497 x 10
  3879. interacCircos::wigExample
    Wig plot example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1787 x 5
  3880. InteractiveComplexHeatmap::rand_mat
    A random matrix
    csv| json| rda| rds
    matrix|60 x 60
  3881. InterCellar::input.data
    Input Data example
    csv| xlsx| json| ndjson| rda| rds
    data.table|5638 x 11
  3882. IntEREst::mdsChr22ExObj
    Object of SummarizedExperiment type for exon-exon junction of MDS data
    rda| rds
    SummarizedExperiment
  3883. IntEREst::mdsChr22IntSpObj
    Object of SummarizedExperiment type for intron spanning reads of MDS data
    rda| rds
    SummarizedExperiment
  3884. IntEREst::mdsChr22Obj
    Object of SummarizedExperiment type for intron retention MDS data
    rda| rds
    SummarizedExperiment
  3885. IntEREst::pwmU12db
    PWM of U12 and U2-type introns splice sites
    json| rda| rds
    list
  3886. IntEREst::u12
    U12 data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22713 x 16
  3887. IntramiRExploreR::Affy1_Distance_Final
    Targets for the microRNA analyzed from Affy1 plaform using Distance.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|53399 x 8
  3888. IntramiRExploreR::Affy1_Pearson_Final
    Targets for the microRNA analyzed from Affy1 plaform using Pearson.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41845 x 8
  3889. IntramiRExploreR::Affy2_Distance_Final
    Targets for the microRNA analyzed from Affy2 plaform using Distance.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|73374 x 8
  3890. IntramiRExploreR::Affy2_Pearson_Final
    Targets for the microRNA analyzed from Affy2 plaform using Pearson.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52913 x 8
  3891. IntramiRExploreR::miRNA_ID_to_Function
    Contains the miRNA function information from Flybase database.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|66 x 3
  3892. IntramiRExploreR::miRNA_summary_DB
    Contains the summary for the intragenic miRNA.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|257 x 6
  3893. iPath::GSDB_example
    example gene set database (GSDB)
    csv| json| rda| rds
    list
  3894. iPath::prad_cli
    simulated clinical data for PRAD cancer patients
    csv| xlsx| json| ndjson| rda| rds
    data.frame|499 x 3
  3895. iPath::prad_exprs
    expression matrix for PRAD cancer patients in TCGA
    csv| json| rda| rds
    matrix|10000 x 91
  3896. iPath::prad_inds
    normal (0) and tumor (1) classes associated with PRAD expression data
    json| rda| rds
    numeric
  3897. ISAnalytics::association_file
    Example of association file.
    csv| xlsx| json| ndjson| rda| rds
    data.table|53 x 83
  3898. ISAnalytics::integration_matrices
    Example of imported multi-quantification integration matrices.
    csv| xlsx| json| ndjson| rda| rds
    data.table|1689 x 8
  3899. ISAnalytics::proto_oncogenes
    Data frames for proto-oncogenes (human and mouse) and tumor-suppressor genes from UniProt.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|569 x 13
  3900. ISAnalytics::refGenes_hg19
    Gene annotation files for hg19, mm9.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|27275 x 12
  3901. ISAnalytics::refGenes_hg38
    Reference gene annotation for hg38 or mm10.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|84888 x 12
  3902. ISAnalytics::refGenes_mm10
    Reference gene annotation for hg38 or mm10.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|55316 x 12
  3903. ISAnalytics::refGenes_mm9
    Gene annotation files for hg19, mm9.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|24487 x 12
  3904. ISAnalytics::tumor_suppressors
    Data frames for proto-oncogenes (human and mouse) and tumor-suppressor genes from UniProt.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|523 x 13
  3905. iSeq::nrsf
    nrsf data
    json| rda| rds
    list
  3906. ISLET::GE600_se
    ISLET deconvolution example raw input data
    rda| rds
    SummarizedExperiment
  3907. ISLET::GE600age_se
    ISLET example datasets for slope variable testing in csDE
    rda| rds
    SummarizedExperiment
  3908. islify::negImage
    A few CASPR2-negative cells
    json| rda| rds
    array
  3909. islify::posImage
    A few CASPR2-positive cells
    json| rda| rds
    array
  3910. isobar::ib_phospho
    Isobar Data packages
    rda| rds
    iTRAQ4plexSpectra
  3911. isobar::ibspiked_set1
    Isobar Data packages
    rda| rds
    iTRAQ4plexSpectra
  3912. isobar::ibspiked_set2
    Isobar Data packages
    rda| rds
    iTRAQ4plexSpectra
  3913. isobar::noise.model.hcd
    Isobar Data packages
    rda| rds
    ExponentialNoiseModel
  3914. IsoCorrectoR::IsoCorrectoR
    IsoCorrectoR example data
    json| rda| rds
    list
  3915. IsoformSwitchAnalyzeR::exampleSwitchList
    Example data for IsoformSwitchAnalyzeR
    rda| rds
    switchAnalyzeRlist
  3916. IsoformSwitchAnalyzeR::exampleSwitchListAnalyzed
    Example data for IsoformSwitchAnalyzeR
    rda| rds
    switchAnalyzeRlist
  3917. IsoformSwitchAnalyzeR::exampleSwitchListIntermediary
    Example data for IsoformSwitchAnalyzeR
    rda| rds
    switchAnalyzeRlist
  3918. ISoLDE::filteredASRcounts
    NORMALIZED AND FILTERED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES
    csv| json| rda| rds
    matrix|6062 x 14
  3919. ISoLDE::normASRcounts
    NORMALIZED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES
    csv| json| rda| rds
    matrix|8364 x 14
  3920. ISoLDE::rawASRcounts
    RAW ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES
    csv| json| rda| rds
    matrix|8364 x 14
  3921. ISoLDE::target
    METADATA ABOUT THE ASR COUNT DATA.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 3
  3922. isomiRs::dat286.long
    Data frame containing mirna from Argyropoulos's paper
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13728 x 9
  3923. isomiRs::ego
    enrichResult class
    csv| xlsx| json| ndjson| rda| rds
    data.frame|424 x 9
  3924. isomiRs::gene_ex_rse
    Data frame containing gene expression data
    rda| rds
    SummarizedExperiment
  3925. isomiRs::ma_ex
    Data frame containing gene-mirna relationship
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 20
  3926. isomiRs::mirData
    Example of IsomirDataSeq with human brain miRNA counts data
    rda| rds
    IsomirDataSeq
  3927. isomiRs::mirna_ex_rse
    Data frame containing mirna expression data
    rda| rds
    SummarizedExperiment
  3928. isomiRs::mirTritation
    Data frame containing mirna from Argyropoulos's paper
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2860 x 10
  3929. ITALICSData::quartet
    Quartet Info example for the vignette
    json| rda| rds
    list
  3930. ITALICSData::snpInfo
    snp Info example for the vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2930 x 6
  3931. iterativeBMA::testClass
    Sample Test Data for the Iterative BMA Algorithm
    json| rda| rds
    numeric
  3932. iterativeBMA::testData
    Sample Test Data for the Iterative BMA Algorithm
    rda| rds
    ExpressionSet
  3933. iterativeBMA::trainClass
    Sample Training Data for the Iterative BMA Algorithm
    json| rda| rds
    numeric
  3934. iterativeBMA::trainData
    Sample Training Data for the Iterative BMA Algorithm
    rda| rds
    ExpressionSet
  3935. iterativeBMAsurv::testCens
    Sample Test Data for the Iterative BMA Algorithm for Survival Analysis
    json| rda| rds
    numeric
  3936. iterativeBMAsurv::testData
    Sample Test Data for the Iterative BMA Algorithm for Survival Analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 100
  3937. iterativeBMAsurv::testSurv
    Sample Test Data for the Iterative BMA Algorithm for Survival Analysis
    json| rda| rds
    numeric
  3938. iterativeBMAsurv::trainCens
    Sample Training Data for the Iterative BMA Algorithm for Survival Analysis
    json| rda| rds
    numeric
  3939. iterativeBMAsurv::trainData
    Sample Training Data for the Iterative BMA Algorithm for Survival Analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|65 x 100
  3940. iterativeBMAsurv::trainSurv
    Sample Training Data for the Iterative BMA Algorithm for Survival Analysis
    json| rda| rds
    numeric
  3941. IVAS::sampleexp
    CEU expression data
    csv| xlsx| rda| rds
    data.frame|64 x 78
  3942. IVAS::samplesnp
    CEU genotype data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 78
  3943. IVAS::samplesnplocus
    snplocus
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 3
  3944. ivygapSE::ivySE
    ivySE: SummarizedExperiment for IvyGAP expression data and metadata
    rda| rds
    SummarizedExperiment
  3945. IWTomics::ETn_example
    ETn Recombination hotspots data
    rda| rds
    IWTomicsData
  3946. IWTomics::features_example
    Example of features
    csv| json| rda| rds
    list
  3947. IWTomics::regions_example
    Example of regions
    rda| rds
    CompressedGRangesList
  3948. IWTomics::regionsFeatures_center
    Example of '"IWTomicsData"' object with center alignment
    rda| rds
    IWTomicsData
  3949. IWTomics::regionsFeatures_scale
    Example of '"IWTomicsData"' object with scale alignment
    rda| rds
    IWTomicsData
  3950. Iyer517::Iyer517
    exprSet instance Iyer517, time series on transcriptional response of fibroblasts to serum
    rda| rds
    ExpressionSet
  3951. Iyer517::Iyer517GO
    Partly annotated version of Iyer517 data
    rda| rds
    environment
  3952. Iyer517::IyerAnnotated
    Partly annotated version of Iyer517 data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|517 x 9
  3953. JASPAR2014::JASPAR2014SitesSeqs
    Sites sequences
    rda| rds
    list
  3954. jazzPanda::rep1_clusters
    Rep1 selected cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1705 x 6
  3955. jazzPanda::rep1_neg
    Rep1 negative control genes within the selected region.
    rda| rds
    SpatialExperiment
  3956. jazzPanda::rep1_sub
    A small section of Xenium human breast cancer rep1.
    rda| rds
    SpatialExperiment
  3957. jazzPanda::rep2_clusters
    Rep2 selected cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1815 x 6
  3958. jazzPanda::rep2_neg
    Rep2 negative control genes within the selected region.
    rda| rds
    SpatialExperiment
  3959. jazzPanda::rep2_sub
    A small section of Xenium human breast cancer rep2.
    rda| rds
    SpatialExperiment
  3960. KBoost::D4_multi_1
    Dream 4 multifactorial pertubation challenge dataset 1
    csv| json| rda| rds
    matrix|100 x 0
  3961. KBoost::D4_multi_2
    Dream 4 multifactorial pertubation challenge dataset 2
    csv| json| rda| rds
    matrix|100 x 0
  3962. KBoost::D4_multi_3
    Dream 4 multifactorial pertubation challenge dataset 3
    csv| json| rda| rds
    matrix|100 x 0
  3963. KBoost::D4_multi_4
    Dream 4 multifactorial pertubation challenge dataset 4
    csv| json| rda| rds
    matrix|100 x 0
  3964. KBoost::D4_multi_5
    Dream 4 multifactorial pertubation challenge dataset 5
    csv| json| rda| rds
    matrix|100 x 0
  3965. KBoost::G_D4_multi_1
    Gold Standard Dream 4 multifactorial pertubation challenge dataset 1
    csv| json| rda| rds
    matrix|176 x 3
  3966. KBoost::G_D4_multi_2
    Gold Standard Dream 4 multifactorial pertubation challenge dataset 2
    csv| json| rda| rds
    matrix|249 x 3
  3967. KBoost::G_D4_multi_3
    Gold Standard Dream 4 multifactorial pertubation challenge dataset 3
    csv| json| rda| rds
    matrix|195 x 3
  3968. KBoost::G_D4_multi_4
    Gold Standard Dream 4 multifactorial pertubation challenge dataset 4
    csv| json| rda| rds
    matrix|211 x 3
  3969. KBoost::G_D4_multi_5
    Gold Standard Dream 4 multifactorial pertubation challenge dataset 5
    csv| json| rda| rds
    matrix|193 x 3
  3970. KBoost::Gerstein_Prior_ENET_2
    Gene Regulatory Network from human ChIP-Seq data in Encode
    csv| json| rda| rds
    matrix|26070 x 2
  3971. KBoost::Human_TFs
    Index of human genes' Symbols, Entrez and Ensembl for K-Boost Pacakge that correspond to transcription factors.
    json| rda| rds
    character
  3972. KBoost::IRMA_Gold
    IRMA Gold Standard Network
    csv| json| rda| rds
    matrix|5 x 5
  3973. KBoost::irma_off
    IRMA Off Dataset
    csv| json| rda| rds
    matrix|24 x 5
  3974. KBoost::irma_on
    IRMA On Dataset
    csv| json| rda| rds
    matrix|24 x 5
  3975. KCsmart::hsMirrorLocs
    Mirror locations of the human genome
    json| rda| rds
    list
  3976. KCsmart::hsSampleData
    Homo Sapiens artificial cgh data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3268 x 22
  3977. KCsmart::mmMirrorLocs
    Mirror locations of the mouse genome
    csv| json| rda| rds
    list
  3978. kebabs::ccannot
    KeBABS Sequence Data
    json| rda| rds
    character
  3979. kebabs::ccgroups
    KeBABS Sequence Data
    json| rda| rds
    integer
  3980. kebabs::ccseq
    KeBABS Sequence Data
    rda| rds
    AAStringSet
  3981. kebabs::enhancerFB
    KeBABS Sequence Data
    rda| rds
    DNAStringSet
  3982. kebabs::yCC
    KeBABS Sequence Data
    json| rda| rds
    factor
  3983. kebabs::yFB
    KeBABS Sequence Data
    json| rda| rds
    numeric
  3984. kebabs::yMC
    KeBABS Sequence Data
    json| rda| rds
    numeric
  3985. kebabs::yReg
    KeBABS Sequence Data
    csv| json| rda| rds
    matrix|500 x 0
  3986. KEGGandMetacoreDzPathwaysGEO::GSE1145
    Data Set Id: GSE1145
    rda| rds
    ExpressionSet
  3987. KEGGandMetacoreDzPathwaysGEO::GSE11906
    Data Set Id: GSE11906
    rda| rds
    ExpressionSet
  3988. KEGGandMetacoreDzPathwaysGEO::GSE14924_CD4
    Data Set Id: GSE14924_CD4
    rda| rds
    ExpressionSet
  3989. KEGGandMetacoreDzPathwaysGEO::GSE14924_CD8
    Data Set Id: GSE14924_CD8
    rda| rds
    ExpressionSet
  3990. KEGGandMetacoreDzPathwaysGEO::GSE16759
    Data Set Id: GSE16759
    rda| rds
    ExpressionSet
  3991. KEGGandMetacoreDzPathwaysGEO::GSE19420
    Data Set Id: GSE19420
    rda| rds
    ExpressionSet
  3992. KEGGandMetacoreDzPathwaysGEO::GSE20164
    Data Set Id: GSE20164
    rda| rds
    ExpressionSet
  3993. KEGGandMetacoreDzPathwaysGEO::GSE22780
    Data Set Id: GSE22780
    rda| rds
    ExpressionSet
  3994. KEGGandMetacoreDzPathwaysGEO::GSE23878
    Data Set Id: GSE23878
    rda| rds
    ExpressionSet
  3995. KEGGandMetacoreDzPathwaysGEO::GSE24739_G0
    Data Set Id: GSE24739_G0
    rda| rds
    ExpressionSet
  3996. KEGGandMetacoreDzPathwaysGEO::GSE24739_G1
    Data Set Id: GSE24739_G1
    rda| rds
    ExpressionSet
  3997. KEGGandMetacoreDzPathwaysGEO::GSE30153
    Data Set Id: GSE30153
    rda| rds
    ExpressionSet
  3998. KEGGandMetacoreDzPathwaysGEO::GSE32676
    Data Set Id: GSE32676
    rda| rds
    ExpressionSet
  3999. KEGGandMetacoreDzPathwaysGEO::GSE38666_epithelia
    Data Set Id: GSE38666_epithelia
    rda| rds
    ExpressionSet
  4000. KEGGandMetacoreDzPathwaysGEO::GSE38666_stroma
    Data Set Id: GSE38666_stroma
    rda| rds
    ExpressionSet
  4001. KEGGandMetacoreDzPathwaysGEO::GSE4183
    Data Set Id: GSE4183
    rda| rds
    ExpressionSet
  4002. KEGGandMetacoreDzPathwaysGEO::GSE42057
    Data Set Id: GSE42057
    rda| rds
    ExpressionSet
  4003. KEGGandMetacoreDzPathwaysGEO::GSE7305
    Data Set Id: GSE7305
    rda| rds
    ExpressionSet
  4004. KEGGdzPathwaysGEO::GSE1297
    Gene Expression Omnibus (GEO) Data Set Id: GSE1297
    rda| rds
    ExpressionSet
  4005. KEGGdzPathwaysGEO::GSE14762
    Gene Expression Omnibus (GEO) Data Set Id: GSE14762
    rda| rds
    ExpressionSet
  4006. KEGGdzPathwaysGEO::GSE15471
    Gene Expression Omnibus (GEO) Data Set Id: GSE15471
    rda| rds
    ExpressionSet
  4007. KEGGdzPathwaysGEO::GSE16515
    Gene Expression Omnibus (GEO) Data Set Id: GSE16515
    rda| rds
    ExpressionSet
  4008. KEGGdzPathwaysGEO::GSE18842
    Gene Expression Omnibus (GEO) Data Set Id: GSE18842
    rda| rds
    ExpressionSet
  4009. KEGGdzPathwaysGEO::GSE19188
    Gene Expression Omnibus (GEO) Data Set Id: GSE19188
    rda| rds
    ExpressionSet
  4010. KEGGdzPathwaysGEO::GSE19728
    Gene Expression Omnibus (GEO) Data Set Id: GSE19728
    rda| rds
    ExpressionSet
  4011. KEGGdzPathwaysGEO::GSE20153
    Gene Expression Omnibus (GEO) Data Set Id: GSE20153
    rda| rds
    ExpressionSet
  4012. KEGGdzPathwaysGEO::GSE20291
    Gene Expression Omnibus (GEO) Data Set Id: GSE20291
    rda| rds
    ExpressionSet
  4013. KEGGdzPathwaysGEO::GSE21354
    Gene Expression Omnibus (GEO) Data Set Id: GSE21354
    rda| rds
    ExpressionSet
  4014. KEGGdzPathwaysGEO::GSE3467
    Gene Expression Omnibus (GEO) Data Set Id: GSE3467
    rda| rds
    ExpressionSet
  4015. KEGGdzPathwaysGEO::GSE3585
    Gene Expression Omnibus (GEO) Data Set Id: GSE3585
    rda| rds
    ExpressionSet
  4016. KEGGdzPathwaysGEO::GSE3678
    Gene Expression Omnibus (GEO) Data Set Id: GSE3678
    rda| rds
    ExpressionSet
  4017. KEGGdzPathwaysGEO::GSE4107
    Gene Expression Omnibus (GEO) Data Set Id: GSE4107
    rda| rds
    ExpressionSet
  4018. KEGGdzPathwaysGEO::GSE5281_EC
    Gene Expression Omnibus (GEO) Data Set Id: GSE5281. GSE5281_EC contains data for Entorhinal cortex samples from the data set GSE5281.
    rda| rds
    ExpressionSet
  4019. KEGGdzPathwaysGEO::GSE5281_HIP
    Gene Expression Omnibus (GEO) Data Set Id: GSE5281.GSE5281_HIP contains data for hippocampus samples from the data set GSE5281.
    rda| rds
    ExpressionSet
  4020. KEGGdzPathwaysGEO::GSE5281_VCX
    Gene Expression Omnibus (GEO) Data Set Id: GSE5281. GSE5281_VCX contains data for Visual Cortex samples from the data set GSE5281.
    rda| rds
    ExpressionSet
  4021. KEGGdzPathwaysGEO::GSE6956AA
    Gene Expression Omnibus (GEO) Data Set Id: GSE6956. GSE6956AA contains data for African-American Men from the data set GSE6956
    rda| rds
    ExpressionSet
  4022. KEGGdzPathwaysGEO::GSE6956C
    Gene Expression Omnibus (GEO) Data Set Id: GSE6956. GSE6956C contains data for European-American Men from the data set GSE6956.
    rda| rds
    ExpressionSet
  4023. KEGGdzPathwaysGEO::GSE781
    Gene Expression Omnibus (GEO) Data Set Id: GSE781
    rda| rds
    ExpressionSet
  4024. KEGGdzPathwaysGEO::GSE8671
    Gene Expression Omnibus (GEO) Data Set Id: GSE8671
    rda| rds
    ExpressionSet
  4025. KEGGdzPathwaysGEO::GSE8762
    Gene Expression Omnibus (GEO) Data Set Id: GSE8762
    rda| rds
    ExpressionSet
  4026. KEGGdzPathwaysGEO::GSE9348
    Gene Expression Omnibus (GEO) Data Set Id: GSE9348
    rda| rds
    ExpressionSet
  4027. KEGGdzPathwaysGEO::GSE9476
    Gene Expression Omnibus (GEO) Data Set Id: GSE9476
    rda| rds
    ExpressionSet
  4028. KEGGemUP::res_de_macro_IFNg_vs_naive
    A sample 'data.frame' containing Differential Expression Analysis, generated with 'limma'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16524 x 10
  4029. KEGGgraph::KEGGEdgeSubtype
    KEGG edge subtypes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 11
  4030. KEGGgraph::KEGGEdgeType
    KEGG edge types
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 2
  4031. KEGGgraph::KEGGNodeType
    KEGG node types
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 2
  4032. KEGGgraph::KEGGPATHID2NAME
    KEGG pathway identifier to name
    rda| rds
    AnnDbBimap
  4033. keggorthology::keggOrthDF
    create a graph from a specific data frame format for KEGG orthology
    csv| xlsx| json| ndjson| rda| rds
    data.frame|357 x 5
  4034. keggorthology::KOgraph
    create a graph from a specific data frame format for KEGG orthology
    rda| rds
    graphNEL
  4035. kidpack::cloneanno
    renal cell cancer expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4224 x 9
  4036. kidpack::eset
    renal cell cancer expression data
    rda| rds
    ExpressionSet
  4037. kidpack::esetSpot
    renal cell cancer expression data
    rda| rds
    ExpressionSet
  4038. kidpack::hybanno
    renal cell cancer raw data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|175 x 3
  4039. kidpack::qua
    renal cell cancer raw data
    json| rda| rds
    array
  4040. kidpack::spotanno
    renal cell cancer raw data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8704 x 11
  4041. KinSwingR::example_phosphoproteome
    Example phosphoproteome.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6215 x 4
  4042. KinSwingR::phosphositeplus_human
    Human kinase-substrates derived from PhosphositePlus.
    csv| json| rda| rds
    matrix|11985 x 2
  4043. KOdata::gene_cell_info
    Baseline expression information for genes across cell lines
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1703457 x 6
  4044. KOdata::KO_data
    LINCS knock-out data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36720 x 9
  4045. LACE::inference
    Results obtained with the function LACE on the provided input data from Rambow, Florian, et al. "Toward minimal residual disease-directed therapy in melanoma." Cell 174.4 (2018): 843-855.
    json| rda| rds
    list
  4046. LACE::longitudinal_sc_variants
    Mutation data from Rambow, Florian, et al. "Toward minimal residual disease-directed therapy in melanoma." Cell 174.4 (2018): 843-855.
    json| rda| rds
    list
  4047. LBE::golub.pval
    p-values corresponding to the gene expression data from Golub et al. (1999).
    json| rda| rds
    numeric
  4048. LBE::hedenfalk.pval
    p-values corresponding to the gene expression data from Hedenfalk et al. (2001).
    json| rda| rds
    numeric
  4049. ldblock::EUR_singletons
    singletons from EUR
    json| rda| rds
    character
  4050. ldblock::sampinf_1kg
    population and relationship information for 1000 genomes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3500 x 16
  4051. LEA::example_ancestrymap
    'ancestrymap' format description
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 3
  4052. LEA::example_geno
    Input file for 'snmf'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 1
  4053. LEA::example_lfmm
    Input file for 'lfmm'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 4
  4054. LEA::example_ped
    'ped' format description
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 14
  4055. LEA::example_vcf
    'vcf' format description
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 12
  4056. LEA::offset_example
    Example data for genetic offset analysis
    json| rda| rds
    list
  4057. leapR::kinasesubstrates
    Kinase substrate lists
    json| rda| rds
    geneset_data
  4058. leapR::krbpaths
    KEGG, Reactome, BioCarta Pathways
    json| rda| rds
    geneset_data
  4059. leapR::longlist
    Long list of patient samples
    json| rda| rds
    character
  4060. leapR::ncipid
    NCI Gene lists
    json| rda| rds
    geneset_data
  4061. leapR::shortlist
    A list of pathways and genes that comprise these pathways from msigdb
    json| rda| rds
    character
  4062. LedPred::crm.features
    This is data to be included in my package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|550 x 0
  4063. LedPred::feature.ranking
    This is data to be included in my package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|265 x 3
  4064. leeBamViews::leeRPKM
    supplemental data extract on RNA seq results in yeast
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6291 x 16
  4065. leeBamViews::leeUnn
    supplemental data extracts on existing evidence of transcription in yeast
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54822 x 11
  4066. lefser::zeller14
    Example dataset for lefser
    rda| rds
    SummarizedExperiment
  4067. lemur::glioblastoma_example_data
    The 'glioblastoma_example_data' dataset
    rda| rds
    SingleCellExperiment
  4068. les::exprs
    Spike-in ChIP-chip data set
    csv| json| rda| rds
    matrix|452 x 6
  4069. les::pos
    Spike-in ChIP-chip data set
    json| rda| rds
    integer
  4070. les::pval
    Spike-in ChIP-chip data set
    json| rda| rds
    numeric
  4071. les::reference
    Spike-in ChIP-chip data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 6
  4072. leukemiasEset::leukemiasEset
    Leukemia's microarray gene expression data (expressionSet).
    rda| rds
    ExpressionSet
  4073. lfa::hgdp_subset
    HGDP subset
    csv| json| rda| rds
    matrix|5000 x 159
  4074. Lheuristic::TCGAexpression
    Expression data matrix obtained from TCGA, TCGA-COAD dataset
    csv| json| rda| rds
    matrix|1000 x 30
  4075. Lheuristic::TCGAmethylation
    Methylation data matrix obtained from TCGA, TCGA-COAD dataset
    csv| json| rda| rds
    matrix|1000 x 30
  4076. LiebermanAidenHiC2009::DNAse1.df
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5129 x 9
  4077. LiebermanAidenHiC2009::DNAse2.df
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6106 x 9
  4078. LiebermanAidenHiC2009::H3K27me3.df
    csv| xlsx| json| ndjson| rda| rds
    data.frame|295 x 9
  4079. LiebermanAidenHiC2009::H3K36me3.df
    csv| xlsx| json| ndjson| rda| rds
    data.frame|191 x 9
  4080. LiebermanAidenHiC2009::HiC_GM_chr14
    csv| xlsx| json| ndjson| rda| rds
    data.frame|537355 x 9
  4081. liftOver::cur
    rda| rds
    gwaswloc
  4082. limpca::trout
    trout: the Rainbow trouts transcriptomic dataset
    json| rda| rds
    list
  4083. limpca::UCH
    UCH: the Urine Citrate-Hippurate metabolomic dataset
    json| rda| rds
    list
  4084. LimROTS::UPS1.Case4
    Spectronaut and ScaffoldDIA UPS1 Spiked Dataset case 4
    rda| rds
    SummarizedExperiment
  4085. LinkHD::Ruminotypes
    Whole Ruminotypes dataset communities
    json| rda| rds
    list
  4086. LinkHD::Taraoceans
    TARA Oceans datasets
    rda| rds
    list
  4087. Linnorm::Islam2011
    scRNA-seq data from Islam et al. 2011
    csv| json| rda| rds
    matrix|14913 x 96
  4088. Linnorm::LIHC
    Partial RNA-seq data from TCGA LIHC (Liver Hepatocellular Carcinoma)
    csv| json| rda| rds
    matrix|19442 x 10
  4089. Linnorm::SEQC
    Partial RNA-seq data from SEQC/MAQC-III Sample A
    csv| json| rda| rds
    matrix|42639 x 10
  4090. lionessR::exp
    OS data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10000 x 53
  4091. lionessR::targets
    OS data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|53 x 2
  4092. lipidr::data_normalized
    Example dataset (normalized and log2 transformed)
    rda| rds
    LipidomicsExperiment
  4093. lipidr::lipidDefaults
    Default values for lipidr internal functions A set of default mappings and annotation used internally to correctly parse lipid molecule names.
    json| rda| rds
    list
  4094. lipidr::lipidnames_pattern
    Patterns used in parsing lipid names
    json| rda| rds
    list
  4095. LipidTrend::abundance_2D
    Example lipid abundance data for two-dimensional LipidTrend analysis
    csv| json| rda| rds
    matrix|137 x 6
  4096. LipidTrend::abundance_CL
    Example lipid abundance data for one-dimensional LipidTrend analysis
    csv| json| rda| rds
    matrix|29 x 6
  4097. LipidTrend::char_table_2D
    Example lipid characteristics table for two-dimensional LipidTrend analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|137 x 2
  4098. LipidTrend::char_table_CL
    Example lipid characteristics table for one-dimensional LipidTrend analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29 x 1
  4099. LipidTrend::group_info
    Example group information table for LipidTrend analysis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 3
  4100. LipidTrend::lipid_se_2D
    Example Dataset for two-dimensional data
    rda| rds
    SummarizedExperiment
  4101. LipidTrend::lipid_se_CL
    Example Dataset for one-dimensional data
    rda| rds
    SummarizedExperiment
  4102. ListerEtAlBSseq::H1.WGBS
    BS-seq data of H1 cell line
    rda| rds
    BSdata
  4103. ListerEtAlBSseq::IMR90.WGBS
    BS-seq data of IMR90 cell line
    rda| rds
    BSdata
  4104. LOBSTAHS::default.acylRanges
    LOBSTAHS default databases and database generation parameters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|73 x 11
  4105. LOBSTAHS::default.adductHierarchies
    LOBSTAHS default databases and database generation parameters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 43
  4106. LOBSTAHS::default.componentCompTable
    LOBSTAHS default databases and database generation parameters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|143 x 20
  4107. LOBSTAHS::default.LOBdbase
    LOBSTAHS default databases and database generation parameters
    rda| rds
    list
  4108. LOBSTAHS::default.oxyRanges
    LOBSTAHS default databases and database generation parameters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 10
  4109. LOBSTAHS::default.rt.windows
    LOBSTAHS default databases and database generation parameters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|94 x 2
  4110. loci2path::biocarta
    eQTL geneset enrichment query demo data
    rda| rds
    geneSet
  4111. loci2path::eset.list
    eQTL geneset enrichment query demo data
    rda| rds
    list
  4112. loci2path::query.gr
    eQTL geneset enrichment query demo data
    rda| rds
    GRanges
  4113. logicFS::cl.logicfs
    Example Data of logicFS
    json| rda| rds
    integer
  4114. logicFS::data.logicfs
    Example Data of logicFS
    csv| json| rda| rds
    matrix|400 x 15
  4115. LOLA::userSets
    An example set of regions, sampled from the example database.
    rda| rds
    CompressedGRangesList
  4116. LOLA::userUniverse
    A reduced GRanges object from the example regionDB database
    rda| rds
    GRanges
  4117. LPE::Ley
    Gene Expression Data from Mouse Immune response study, (2002)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12488 x 7
  4118. lpNet::dat.normalized
    csv| json| rda| rds
    matrix|408 x 17
  4119. lpNet::dat.unnormalized
    csv| json| rda| rds
    matrix|408 x 17
  4120. LRcell::example_gene_pvals
    Example gene_pvals named vector from mouse experiment.
    json| rda| rds
    numeric
  4121. LRcell::example_LRcell_res
    An example output of LRcell using data example_gene_pvals and mouse_FC_marker_genes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|81 x 8
  4122. LRcell::mouse_celltypes
    Mapping between subclusters and cell types in Mouse Brain
    json| rda| rds
    character
  4123. LRcell::mouse_FC_marker_genes
    Example marker genes from mouse FC brain region.
    csv| json| rda| rds
    list
  4124. lumi::example.lumi
    Example Illumina Expression data in LumiBatch class
    rda| rds
    LumiBatch
  4125. lumi::example.lumiMethy
    Example Illumina Infinium Methylation data in MethyLumiM class
    rda| rds
    MethyLumiM
  4126. lumi::example.methyTitration
    Example Illumina Infinium Methylation titration data in MethyLumiM class
    rda| rds
    MethyLumiM
  4127. lumiBarnes::lumiBarnes
    Barnes Benchmark Illumina Tissues Titration Data
    rda| rds
    LumiBatch
  4128. LungCancerACvsSCCGEO::anoLC
    Annotation of a small set of training and test set samples (30 total) used by team 221 in the IMPROVER DSC for the lung cancer sub-challenge.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 2
  4129. LungCancerACvsSCCGEO::gsLC
    Annotation of a small set of training and test set samples (30 total) used by team 221 in the IMPROVER DSC for the lung cancer sub-challenge.
    csv| json| rda| rds
    matrix|15 x 2
  4130. lungExpression::harvard
    A Harvard study on lung cancer gene expression
    rda| rds
    ExpressionSet
  4131. lungExpression::michigan
    A Michigan study on lung cancer gene expression
    rda| rds
    ExpressionSet
  4132. lungExpression::stanford
    Public lung cancer data from the Stanford study
    rda| rds
    ExpressionSet
  4133. M3C::desx
    GBM clinical annotation data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 2
  4134. M3C::mydata
    GBM expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1740 x 50
  4135. M3DExampleData::Mmus_example_list
    M3D Example Data
    csv| json| rda| rds
    list
  4136. Macarron::chem_taxonomy
    Chemical taxonomy lookup table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|145837 x 4
  4137. maCorrPlot::datA.amp
    Example data for package maCorrSample
    csv| json| rda| rds
    matrix|1000 x 30
  4138. maCorrPlot::datA.mas5
    Example data for package maCorrSample
    csv| json| rda| rds
    matrix|1000 x 30
  4139. maCorrPlot::datA.rma
    Example data for package maCorrSample
    csv| json| rda| rds
    matrix|1000 x 30
  4140. maCorrPlot::datB.amp
    Example data for package maCorrSample
    csv| json| rda| rds
    matrix|1000 x 30
  4141. maCorrPlot::datB.mas5
    Example data for package maCorrSample
    csv| json| rda| rds
    matrix|1000 x 30
  4142. maCorrPlot::datB.rma
    Example data for package maCorrSample
    csv| json| rda| rds
    matrix|1000 x 30
  4143. macrophage::gse
    Macrophage dataset - Salmon quantification
    rda| rds
    RangedSummarizedExperiment
  4144. macrophage::macro_tx2gene
    Macrophage dataset - transcript-to-gene table
    rda| rds
    DFrame
  4145. macrophage::macro_txp_se
    Macrophage dataset - transcript-level quantification with inferential replicates
    rda| rds
    RangedSummarizedExperiment
  4146. made4::khan
    Microarray gene expression dataset from Khan et al., 2001. Subset of 306 genes.
    json| rda| rds
    list
  4147. made4::NCI60
    Microarray gene expression profiles of the NCI 60 cell lines
    json| rda| rds
    list
  4148. magpie::power.test
    Power calculation results for GSE46705
    json| rda| rds
    list
  4149. magpie::power.test
    Power calculation results for GSE46705
    json| rda| rds
    list
  4150. magpie::power.test
    Power calculation results for GSE46705
    json| rda| rds
    list
  4151. magpie::power.test
    Power calculation results for GSE46705
    json| rda| rds
    list
  4152. magpie::power.test
    Power calculation results for GSE46705
    json| rda| rds
    list
  4153. magpie::power.test
    Power calculation results for GSE46705
    json| rda| rds
    list
  4154. magrene::gma_grn
    Sample soybean GRN
    csv| xlsx| json| ndjson| rda| rds
    data.frame|137866 x 3
  4155. magrene::gma_paralogs
    Soybean (Glycine max) duplicated genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80763 x 3
  4156. magrene::gma_ppi
    Sample soybean PPI network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18522 x 2
  4157. magrene::nulls
    Null distribution of motif frequencies for vignette data set
    csv| json| rda| rds
    list
  4158. MAI::untargeted_LCMS_data
    Example data set containing missing values
    csv| json| rda| rds
    matrix|300 x 0
  4159. MAIT::biotransformationsTable
    biotransformationsTable
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49 x 2
  4160. MAIT::Database
    Human Metabolome Database
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8538 x 5
  4161. MAIT::MAIT
    MAIT
    rda| rds
    MAIT
  4162. MAIT::negAdducts
    Negative adducts table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 7
  4163. MAIT::posAdducts
    Positive adducts table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 7
  4164. mammaPrintData::buyseRGcy3
    Gene expression, annotations and clinical information for the Buyse cohort: set of dye-swap hybridizations in which the reference RNA was labeled with Cy3
    json| rda| rds
    RGList
  4165. mammaPrintData::buyseRGcy5
    Gene expression, annotations and clinical information for the Buyse cohort: set of dye-swap hybridizations in which the reference RNA was labeled with Cy5
    json| rda| rds
    RGList
  4166. mammaPrintData::glasRGcy3
    Gene expression, annotations and clinical information for the Glas cohort: set of dye-swap hybridizations in which the information was associated with RNA samples labeled with Cy3
    json| rda| rds
    RGList
  4167. mammaPrintData::glasRGcy5
    Gene expression, annotations and clinical information for the Glas cohort: set of dye-swap hybridizations in which the information was associated with RNA samples labeled with Cy5
    json| rda| rds
    RGList
  4168. MANOR::amplicon.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4169. MANOR::chromosome.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4170. MANOR::clone.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4171. MANOR::control.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4172. MANOR::dapi.snr.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4173. MANOR::dyn.x.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4174. MANOR::dyn.y.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4175. MANOR::dynamics.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4176. MANOR::edge
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  4177. MANOR::edge.norm
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  4178. MANOR::global.spatial.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4179. MANOR::gradient
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  4180. MANOR::gradient.norm
    Examples of array-CGH data with spatial artifacts
    rda| rds
    arrayCGH
  4181. MANOR::intensity.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4182. MANOR::local.spatial.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4183. MANOR::num.chromosome.flag
    Internal Functions for MANOR Package
    rda| rds
    flag
  4184. MANOR::pct.clone.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4185. MANOR::pct.replicate.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4186. MANOR::pct.spot.before.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4187. MANOR::pct.spot.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4188. MANOR::position.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4189. MANOR::ref.snr.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4190. MANOR::rep.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4191. MANOR::replicate.aux
    Internal Functions for MANOR Package
    json| rda| rds
    function
  4192. MANOR::replicate.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4193. MANOR::smoothness.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4194. MANOR::SNR.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4195. MANOR::spatial.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4196. MANOR::spot.corr.flag
    Internal Functions for MANOR Package
    rda| rds
    flag
  4197. MANOR::spot.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4198. MANOR::unique.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4199. MANOR::val.mark.flag
    Examples of flag objects to apply to CGH arrays
    rda| rds
    flag
  4200. MANOR::var.replicate.qscore
    Examples of qscore objects (quality scores) to apply to CGH arrays
    rda| rds
    qscore
  4201. MantelCorr::GolubTrain
    Golub Training Set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7129 x 38
  4202. MAPFX::ord.fcs.raw.meta.df.out_ffc
    Metadata of the example MPC data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|250 x 3
  4203. MAPFX::ord.fcs.raw.meta.df.out_mpc
    Metadata of the example FFC data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13300 x 7
  4204. MAPFX::ord.fcs.raw.mt_ffc
    Subset of the single-cell murine lung data at steady state from an MPC experiment
    csv| json| rda| rds
    matrix|250 x 19
  4205. MAPFX::ord.fcs.raw.mt_mpc
    Subset of the sorted CD4+ and CD8+ T cells from mice splenocytes from an FFC experiment
    csv| json| rda| rds
    matrix|13300 x 22
  4206. maPredictDSC::anoLC
    Annotation of a small set of training and test set samples (30 total) used by team 221 in the IMPROVER DSC for the lung cancer sub-challenge.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 2
  4207. maPredictDSC::gsLC
    Annotation of a small set of training and test set samples (30 total) used by team 221 in the IMPROVER DSC for the lung cancer sub-challenge.
    csv| json| rda| rds
    matrix|15 x 2
  4208. MAQCsubset::afxsub
    Experimental Data Package: MAQCsubset
    rda| rds
    AffyBatch
  4209. MAQCsubset::afxsubRMA
    Experimental Data Package: MAQCsubset
    rda| rds
    exprSet
  4210. MAQCsubset::afxsubRMAES
    Experimental Data Package: MAQCsubset
    rda| rds
    ExpressionSet
  4211. MAQCsubset::gehMAQCsubDef
    Excerpt from GE Codelink array contributions to MAQC
    rda| rds
    ExpressionSet
  4212. MAQCsubset::gehSubRaw
    Excerpt from GE Codelink array contributions to MAQC
    json| rda| rds
    Codelink
  4213. MAQCsubset::gnfCerebHi
    Gene lists for hi or low abundance in cerebellum according to Novartis GNF symatlas
    csv| xlsx| json| ndjson| rda| rds
    data.frame|549 x 5
  4214. MAQCsubset::gnfCerebLow
    Gene lists for hi or low abundance in cerebellum according to Novartis GNF symatlas
    csv| xlsx| json| ndjson| rda| rds
    data.frame|418 x 5
  4215. MAQCsubset::ilmMAQCsubR
    Experimental Data Package: MAQCsubset
    rda| rds
    LumiBatch
  4216. markeR::counts_example
    Gene Expression Counts for Marthandan et al. (2016) RNA-Seq Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10373 x 39
  4217. markeR::genesets_example
    Example Gene Sets for Cellular Senescence
    json| rda| rds
    list
  4218. markeR::metadata_example
    Metadata for Marthandan et al. (2016) RNA-Seq Study
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39 x 6
  4219. marr::msprepCOPD
    Example of processed mass spectrometry dataset
    rda| rds
    SummarizedExperiment
  4220. marray::swirl
    Gene expression data from Swirl zebrafish cDNA microarray experiment
    rda| rds
    marrayRaw
  4221. martini::minigwas
    Description of the minigwas dataset.
    rda| rds
    list
  4222. martini::minippi
    PPIs for the minigwas dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 2
  4223. martini::minisnpMapping
    Genes for the minigwas dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 2
  4224. maSigPro::data.abiotic
    Gene expression data potato abiotic stress
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 36
  4225. maSigPro::edesign.abiotic
    Experimental design potato abiotic stress
    csv| json| rda| rds
    matrix|36 x 6
  4226. maSigPro::edesignCT
    Experimental design with a shared time
    csv| json| rda| rds
    matrix|32 x 7
  4227. maSigPro::edesignDR
    Experimental design with different replicates
    csv| json| rda| rds
    matrix|54 x 7
  4228. maSigPro::ISOdata
    RNA-Seq dataset example for isoforms
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2782 x 37
  4229. maSigPro::ISOdesign
    Experimental design for ISOdata dataset example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 4
  4230. maSigPro::NBdata
    RNA-Seq dataset example
    csv| json| rda| rds
    matrix|100 x 36
  4231. maSigPro::NBdesign
    Experimental design for RNA-Seq example
    csv| json| rda| rds
    matrix|36 x 4
  4232. maskBAD::exmask
    Output object of the function mask
    json| rda| rds
    list
  4233. maskBAD::newAffyBatch
    AffyBatch with reduced genes
    rda| rds
    AffyBatch
  4234. maskBAD::newCdf
    Object of type environment
    rda| rds
    environment
  4235. maskBAD::sequenceMask
    Object containing sequence information for probes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1182 x 4
  4236. MassArray::MassArray.example.data
    MassArray Data object
    rda| rds
    MassArrayData
  4237. massiR::massi.eset
    massi.eset
    rda| rds
    ExpressionSet
  4238. massiR::massi.test.dataset
    The massi test dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1026 x 60
  4239. massiR::massi.test.probes
    The massi test probes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|74 x 0
  4240. massiR::y.probes
    Y chromosome probe list
    csv| json| rda| rds
    list
  4241. MassSpecWavelet::exampleMS
    An example mass spectrum
    csv| json| rda| rds
    matrix|37656 x 0
  4242. MAST::maits
    MAITs data set, RNASeq
    json| rda| rds
    list
  4243. MAST::predicted_sig
    Predicted signatures
    csv| xlsx| json| ndjson| rda| rds
    data.table|100 x 8
  4244. MAST::vbeta
    Vbeta Data Set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34200 x 11
  4245. MAST::vbetaFA
    Vbeta Data Set, FluidigmAssay
    rda| rds
    FluidigmAssay
  4246. mastR::ccle_crc_5
    RNA-seq TPM data of 5 CRC cell line samples from CCLE.
    json| rda| rds
    DGEList
  4247. mastR::im_data_6
    RNA-seq TMM normalized counts data of 6 sorted immune subsets.
    rda| rds
    ExpressionSet
  4248. mastR::lm22
    LM22 matrix for CIBERSORT.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|547 x 23
  4249. mastR::lm7
    LM7 matrix for CIBERSORT.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|375 x 9
  4250. mastR::msigdb_gobp_nk
    Sub-collection of MSigDB gene sets.
    rda| rds
    GeneSetCollection
  4251. mastR::nk_markers
    NK cell markers combination.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|114 x 4
  4252. matchBox::matchBoxExpression
    Example data: ranking from three differential gene expression experiments
    csv| json| rda| rds
    list
  4253. MBCB::expressionSignal
    MBCB - Bayesian Background Correction for Illumina Beadarray
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1033 x 4
  4254. MBCB::negativeControl
    MBCB - Bayesian Background Correction for Illumina Beadarray
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1655 x 4
  4255. MBECS::dummy.list
    Mock-up microbiome abundance table and meta-data.
    json| rda| rds
    list
  4256. MBECS::dummy.mbec
    Mock-up microbiome abundance table and meta-data.
    rda| rds
    MbecData
  4257. MBECS::dummy.ps
    Mock-up microbiome abundance table and meta-data.
    rda| rds
    phyloseq
  4258. mBPCR::jekoChr11Array250Knsp
    Affymetrix GeneChip Mapping 250K NSP Array data of JEKO-1 cell line (chr. 11)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13306 x 4
  4259. mBPCR::rec10k
    Affymetrix GeneChip Mapping 10K Array data of REC-1 cell line
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11454 x 5
  4260. mbQTL::CovFile
    'mbQTL' "CovFile"
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 93
  4261. mbQTL::metagenomeSeqObj
    'mbQTL' "metagenomeSeqObj" "MetagenomSeqObj" is an 'MRexperiment' object format of the "microbeAbund" file.
    rda| rds
    MRexperiment
  4262. mbQTL::microbeAbund
    'mbQTL' "microbiomeAbund" File
    csv| xlsx| json| ndjson| rda| rds
    data.frame|93 x 195
  4263. mbQTL::SnpFile
    'mbQTL' "SnpFile"
    csv| xlsx| json| ndjson| rda| rds
    data.frame|93 x 26
  4264. MBttest::dat
    The Transcriptomic data and t-test results.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13409 x 16
  4265. MBttest::jkttcell
    Jurkat T-cell Transcritomic Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13409 x 13
  4266. MBttest::skjt
    Simulated Null Transcriptomic data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13409 x 14
  4267. MCbiclust::CCLE_samples
    Clinical information for CCLE data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1001 x 13
  4268. MCbiclust::CCLE_small
    Subset of expression levels of CCLE data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 0
  4269. MCbiclust::Mitochondrial_genes
    List of known mitochondrial genes
    json| rda| rds
    character
  4270. mCSEA::exprTest
    Expression data example
    csv| json| rda| rds
    matrix|101 x 20
  4271. mCSEA::myRank
    Precomputed mCSEA results
    json| rda| rds
    numeric
  4272. mCSEA::myResults
    Precomputed mCSEA results
    json| rda| rds
    list
  4273. mCSEAdata::.Random.seed
    json| rda| rds
    integer
  4274. mCSEAdata::annot450K
    Data and examples for mCSEA package
    rda| rds
    GRanges
  4275. mCSEAdata::annotEPIC
    Data and examples for mCSEA package
    rda| rds
    GRanges
  4276. mCSEAdata::annotEPICv2
    Data and examples for mCSEA package
    rda| rds
    GRanges
  4277. mCSEAdata::assocCGI450k
    Data and examples for mCSEA package
    json| rda| rds
    list
  4278. mCSEAdata::assocCGIEPIC
    Data and examples for mCSEA package
    json| rda| rds
    list
  4279. mCSEAdata::assocCGIEPICv2
    Data and examples for mCSEA package
    json| rda| rds
    list
  4280. mCSEAdata::assocGenes450k
    Data and examples for mCSEA package
    json| rda| rds
    list
  4281. mCSEAdata::assocGenesEPIC
    Data and examples for mCSEA package
    json| rda| rds
    list
  4282. mCSEAdata::assocGenesEPICv2
    Data and examples for mCSEA package
    json| rda| rds
    list
  4283. mCSEAdata::assocPromoters450k
    Data and examples for mCSEA package
    json| rda| rds
    list
  4284. mCSEAdata::assocPromotersEPIC
    Data and examples for mCSEA package
    json| rda| rds
    list
  4285. mCSEAdata::assocPromotersEPICv2
    Data and examples for mCSEA package
    json| rda| rds
    list
  4286. mCSEAdata::bandTablehg19
    Human chromosomes information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|931 x 5
  4287. mCSEAdata::bandTablehg38
    Human chromosomes information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1549 x 5
  4288. mCSEAdata::betaTest
    Data and examples for mCSEA package
    csv| json| rda| rds
    matrix|9241 x 20
  4289. mCSEAdata::exprTest
    Data and examples for mCSEA package
    csv| json| rda| rds
    matrix|100 x 20
  4290. mCSEAdata::phenoTest
    Data and examples for mCSEA package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 2
  4291. mdp::example_data
    Expression data example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13838 x 40
  4292. mdp::example_pheno
    Phenotypic data example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 2
  4293. mdp::sample_data
    Sample score results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 3
  4294. mdqc::allQC
    QC report for MLL.B
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 11
  4295. MEAT::CpGs_in_MEAT
    Description of the CpGs used in MEAT
    csv| xlsx| json| ndjson| rda| rds
    data.frame|201 x 6
  4296. MEAT::CpGs_in_MEAT2.0
    Description of the CpGs used in MEAT2.0
    csv| xlsx| json| ndjson| rda| rds
    data.frame|157 x 7
  4297. MEAT::elasticnet_model_MEAT
    Elastic net model used in the original muscle clock (MEAT).
    rda| rds
    elnet
  4298. MEAT::elasticnet_model_MEAT2.0
    Elastic net model used in the updated muscle clock (MEAT 2.0).
    rda| rds
    elnet
  4299. MEAT::gold.mean.MEAT
    Mean methylation in dataset GSE50498 reduced to the 19,401 CpGs of MEAT
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19401 x 2
  4300. MEAT::gold.mean.MEAT2.0
    Mean methylation in dataset GSE50498 reduced to the 18,747 CpGs of MEAT 2.0
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18747 x 2
  4301. MEAT::GSE121961
    GSE121961 methylation data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|866091 x 2
  4302. MEAT::GSE121961_pheno
    GSE121961 phenotypes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|2 x 6
  4303. MEB::real_data_dsp
    A real dataset of genes between the different species.
    rda| rds
    SummarizedExperiment
  4304. MEB::real_data_sp
    A real dataset of genes between the same species.
    rda| rds
    SummarizedExperiment
  4305. MEB::sim_data_dsp
    A simulation dataset of genes between the differetn species.
    rda| rds
    SummarizedExperiment
  4306. MEB::sim_data_sp
    A simulation dataset of genes between the same species.
    rda| rds
    SummarizedExperiment
  4307. MEB::sim_scRNA_data
    A simulation scRNA-seq dataset from splatter package.
    rda| rds
    SingleCellExperiment
  4308. MEB::stable_gene
    The name of the stable genes in all dataset.
    json| rda| rds
    character
  4309. MEDIPSData::CS
    COUPLING SET
    rda| rds
    COUPLINGset
  4310. MEDIPSData::DE_Input
    control data set from definitive endoderm
    rda| rds
    MEDIPSset
  4311. MEDIPSData::DE_MeDIP
    Concatenated set of three MeDIP-seq data sets (replicates) from definitive endoderm
    rda| rds
    list
  4312. MEDIPSData::hESCs_Input
    control data set from human embryonic stem cells
    rda| rds
    MEDIPSset
  4313. MEDIPSData::hESCs_MeDIP
    Concatenated set of three MeDIP-seq data sets (replicates) from human embryonic stem cells
    rda| rds
    list
  4314. MEDIPSData::mart_gene
    An annotation object generated by accessing biomaRt using the MEDIPS.getAnnotation function of the MEDIPS package.
    csv| json| rda| rds
    list
  4315. MEDIPSData::resultTable
    A result table as returnced by the MEDIPS.meth function of the MEDIPS package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|513046 x 44
  4316. MEDIPSData::tcga_luad_lusc_450kmeth
    Lung cancer calibration data
    rda| rds
    GRanges
  4317. MEDME::testMEDMEset
    Dataset of class MEDMEset for testing MEDME
    rda| rds
    MEDMEset
  4318. MEEBOdata::MEEBOctrl
    Annotations and controls for the MEEBO set.
    json| rda| rds
    list
  4319. MEEBOdata::MEEBOset
    Annotations and controls for the MEEBO set.
    csv| json| rda| rds
    matrix|38784 x 16
  4320. MEEBOdata::MEEBOtilingres
    Annotations and controls for the MEEBO set.
    json| rda| rds
    list
  4321. MEIGOR::cnolist
    A CNOlist from CellNOptR paclage
    json| rda| rds
    list
  4322. MEIGOR::cnolist
    A CNOlist from CellNOptR paclage
    rda| rds
    CNOlist
  4323. MEIGOR::cnolist
    A CNOlist from CellNOptR paclage
    json| rda| rds
    list
  4324. MEIGOR::cnolist_cellnopt
    A CNOlist from CellNOptR paclage
    json| rda| rds
    list
  4325. MEIGOR::model
    A model from CellNoptR
    json| rda| rds
    list
  4326. MEIGOR::model
    A model from CellNoptR
    json| rda| rds
    list
  4327. MEIGOR::model
    A model from CellNoptR
    json| rda| rds
    list
  4328. MEIGOR::model_cellnopt
    A model from CellNoptR
    json| rda| rds
    list
  4329. MEIGOR::paramsOpt
    Optimal parameters for simulation with CNORode
    json| rda| rds
    list
  4330. memes::example_ame
    Example runAme() output
    csv| json| rda| rds
    list
  4331. memes::example_ame_large
    runAme() output for example_chip_summits split by binding description
    csv| json| rda| rds
    list
  4332. memes::example_chip_summits
    Annotated Transcription Factor ChIP-seq summits
    rda| rds
    GRanges
  4333. memes::example_dreme
    Example runDreme() output
    rda| rds
    universalmotif_df|2 x 26
  4334. memes::example_dreme_by_binding
    runDreme() output for example_chip_summits split by binding description
    rda| rds
    list
  4335. memes::example_dreme_tomtom
    Example runDreme() output after passing to runTomTom()
    rda| rds
    universalmotif_df|2 x 36
  4336. memes::example_fimo
    Example runFimo() output
    rda| rds
    GRanges
  4337. memes::example_peaks
    Example ChIP-seq peaks
    rda| rds
    GRanges
  4338. memes::example_rnaseq
    RNAseq data from Early and Late Drosophila wings
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|744 x 3
  4339. memes::example_tomtom
    Example runTomTom() output
    rda| rds
    universalmotif_df|1 x 26
  4340. Mergeomics::job.kda
    Key Driver Analyzing results
    json| rda| rds
    list
  4341. meshes::hsamd
    DATA Sets
    rda| rds
    GOSemSimDATA
  4342. meshes::meshtbl
    DATA Sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|164135 x 3
  4343. meshes::meshterms
    DATA Sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31110 x 2
  4344. messina::kirc.exprs
    Example TCGA KIRC RNAseq expression and survival data
    csv| json| rda| rds
    matrix|3 x 422
  4345. messina::kirc.surv
    Example TCGA KIRC RNAseq expression and survival data
    rda| rds
    Surv|422 x 2
  4346. metabCombiner::metabBatches
    Three LC-MS Metabolomics Batch Datasets
    csv| json| rda| rds
    list
  4347. metabCombiner::plasma20
    20 minute LC-MS Analysis of Human Plasma
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8910 x 22
  4348. metabCombiner::plasma30
    30 minute LC-MS Analysis of Human Plasma
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8286 x 22
  4349. MetaboAnnotatoR::acetaminophen
    MetaboAnnotatoR fragment database entry for Acetaminophen Positive mode
    csv| json| rda| rds
    list
  4350. MetaboAnnotatoR::LipidNeg
    MetaboAnnotatoR Lipid Negative fragment libraries
    json| rda| rds
    list
  4351. MetaboAnnotatoR::LipidPos
    MetaboAnnotatoR Lipid Positive fragment libraries
    json| rda| rds
    list
  4352. MetaboAnnotatoR::MetabolitesNeg
    MetaboAnnotatoR Metabolite Negative fragment libraries
    json| rda| rds
    list
  4353. MetaboAnnotatoR::MetabolitesPos
    MetaboAnnotatoR Metabolite Positive fragment libraries
    json| rda| rds
    list
  4354. MetaboAnnotatoR::pseudoMSMS
    MetaboAnnotatoR-generated example pseudoMSMS spectrum and related data
    rda| rds
    list
  4355. MetaboAnnotatoR::RC
    Pseudo-MS/MS spectra from MESA Lipid Positive LC-MS serum samples
    json| rda| rds
    list
  4356. MetaboAnnotatoR::rCandidates
    MetaboAnnotatoR-generated example of ranked annotation candidates
    json| rda| rds
    list
  4357. MetaboAnnotatoR::xset
    MESA cohort subset Lipid Positive LC-MS samples processed using XCMS
    rda| rds
    xcmsSet
  4358. MetaboDynamics::IDs
    KEGG ID mapping of metabolites in data set longitudinalMetabolomics
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|98 x 2
  4359. MetaboDynamics::longitudinalMetabolomics
    A simulated data set of longitudinal concentration tables of metabolites.
    rda| rds
    SummarizedExperiment
  4360. MetaboDynamics::longitudinalMetabolomics_df
    A simulated data set of longitudinal concentration tables of metabolites. In contrast to "longitudinalMetabolomics" this dataset is in data frame format. It was simulated with a different seed compared to longitudinalMetabolomics so the results can deviate.
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|2352 x 8
  4361. MetaboDynamics::metabolite_modules
    KEGG Query Results of experimental metabolites
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|348 x 8
  4362. MetaboDynamics::modules_compounds
    Background KEGG Query Results Of Functional Modules
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3242 x 6
  4363. metabom8::covid
    COVID-19 blood plasma proton NMR spectra (processed)
    json| rda| rds
    list
  4364. metabom8::covid_raw
    COVID-19 blood plasma proton NMR spectra (raw)
    json| rda| rds
    list
  4365. metabom8::hiit_raw
    High-intensity interval training (HIIT) 1H NMR urine dataset
    json| rda| rds
    list
  4366. metabomxtr::euMetabCData
    A sample data set of truncated metabolomics data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 6
  4367. metabomxtr::euMetabData
    A sample data set of truncated metabolomics data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|120 x 6
  4368. metabomxtr::metabdata
    A sample data set of truncated metabolomics data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|115 x 59
  4369. MetaboSignal::directionality_reactions
    List of KEGG reactions with incorrect/inconsistent directionality
    csv| json| rda| rds
    matrix|101 x 2
  4370. MetaboSignal::hpaNormalTissue
    Expression profiles for proteins in human tissues
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1031835 x 6
  4371. MetaboSignal::kegg_pathways
    Examples of metabolic and signaling human KEGG pathways
    csv| json| rda| rds
    matrix|211 x 4
  4372. MetaboSignal::keggNet_example
    KEGG network example
    csv| json| rda| rds
    matrix|45779 x 3
  4373. MetaboSignal::mergedNet_example
    Network containing KEGG, OmniPath and TRRUST interactions
    csv| json| rda| rds
    matrix|87624 x 3
  4374. MetaboSignal::MetaboSignal_table
    Example of MetaboSignal network-table
    csv| json| rda| rds
    matrix|1745 x 3
  4375. MetaboSignal::ppiNet_example
    Signaling-transduction network
    csv| json| rda| rds
    matrix|50087 x 3
  4376. MetaboSignal::regulatory_interactions
    Regulatory interactions from OmniPath and TRRUST
    csv| json| rda| rds
    matrix|50566 x 7
  4377. metaCCA::N1
    Number of individuals in study 1.
    json| rda| rds
    numeric
  4378. metaCCA::N2
    Number of individuals in study 2.
    json| rda| rds
    numeric
  4379. metaCCA::S_XX_study1
    Correlations between 10 SNPs corresponding to the population underlying study 1.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 10
  4380. metaCCA::S_XX_study2
    Correlations between 10 SNPs corresponding to the population underlying study 2.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 10
  4381. metaCCA::S_XY_full_study1
    Univariate summary statistics of 10 traits across 1000 SNPs (study 1).
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 22
  4382. metaCCA::S_XY_full_study2
    Univariate summary statistics of 10 traits across 1000 SNPs (study 2).
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 22
  4383. metaCCA::S_XY_study1
    Univariate summary statistics of 10 traits across 10 SNPs (study 1).
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 22
  4384. metaCCA::S_XY_study2
    Univariate summary statistics of 10 traits across 10 SNPs (study 2).
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 22
  4385. MetaDICT::exampleData
    Example microbiome dataset bundle
    rda| rds
    list
  4386. MetaDICT::exampleData_transfer
    Example microbiome dataset bundle for transfer learning
    json| rda| rds
    list
  4387. metagenomeSeq::lungData
    OTU abundance matrix of samples from a smoker/non-smoker study
    rda| rds
    MRexperiment
  4388. metagenomeSeq::mouseData
    OTU abundance matrix of mice samples from a diet longitudinal study
    rda| rds
    MRexperiment
  4389. metaMS::DB
    Information on three chemical standards measured in GC-MS (liquid injection)
    csv| json| rda| rds
    list
  4390. metaMS::errf
    Mass error surface for Waters Synapt Q-TOF spectrometers
    rda| rds
    lm
  4391. metaMS::exptable
    Sample table for the generation of a database of standards (LCMS)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 7
  4392. metaMS::GCresults
    Results of metaMS for a small GC-MS data set
    rda| rds
    list
  4393. metaMS::LCDBtest
    Sample DB for LC-MS annotation
    json| rda| rds
    list
  4394. metaMS::LCresults
    Result metaMS for a small LC-MS data set
    rda| rds
    list
  4395. metaMS::Orbitrap.RP
    Example settings for 'metaMS'
    rda| rds
    metaMSsettings
  4396. metaMS::smallDB
    Information on three chemical standards measured in GC-MS (liquid injection)
    csv| json| rda| rds
    list
  4397. metaMS::stdInfo
    Information on three chemical standards measured in GC-MS (liquid injection)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 9
  4398. metaMS::Synapt.NP
    Example settings for 'metaMS'
    rda| rds
    metaMSsettings
  4399. metaMS::Synapt.RP
    Example settings for 'metaMS'
    rda| rds
    metaMSsettings
  4400. metaMS::TSQXLS.GC
    Example settings for 'metaMS'
    rda| rds
    metaMSsettings
  4401. MetaPathNet::MetaPathNet_example_network
    Example tryptophan-related MetaPathNet network
    csv| json| rda| rds
    matrix|1769 x 3
  4402. metapone::hmdbCompMZ
    the m/z values of common adduct ions of HMDB metaboites
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5704350 x 3
  4403. metapone::hmdbCompMZ.metapone
    the m/z values of common adduct ions of metapone metaboites
    csv| xlsx| json| ndjson| rda| rds
    data.frame|130850 x 3
  4404. metapone::neg
    Example negative mode data from the Metabolome Atlas of the Aging Mouse Brain
    csv| json| rda| rds
    matrix|6947 x 4
  4405. metapone::pa
    Pathway-metabolite match file.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9579 x 5
  4406. metapone::pos
    Example positive mode data from the Metabolome Atlas of the Aging Mouse Brain
    csv| json| rda| rds
    matrix|10085 x 4
  4407. MetaProViz::alanine_pathways
    alanine_pathways
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|204 x 5
  4408. MetaProViz::biocrates_features
    biocrates_features
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|1019 x 14
  4409. MetaProViz::cellular_meta
    cellular_meta
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|199 x 5
  4410. MetaProViz::equivalent_features
    equivalent_features
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|34 x 7
  4411. MetaProViz::gaude_pathways
    gaude_pathways
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|1932 x 3
  4412. MetaProViz::hallmarks
    hallmarks
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|7322 x 2
  4413. MetaProViz::intracell_dma
    intracell_dma
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|179 x 14
  4414. MetaProViz::intracell_raw
    intracell_raw
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|58 x 186
  4415. MetaProViz::intracell_raw_se
    intracell_raw_se
    rda| rds
    SummarizedExperiment
  4416. MetaProViz::mca_core_rules
    mca_core_rules
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|108 x 7
  4417. MetaProViz::mca_twocond_rules
    mca_twocond_rules
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|36 x 5
  4418. MetaProViz::medium_raw
    medium_raw
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|44 x 77
  4419. MetaProViz::tissue_dma
    tissue_dma
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|570 x 17
  4420. MetaProViz::tissue_dma_old
    tissue_dma_old
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|570 x 17
  4421. MetaProViz::tissue_dma_young
    tissue_dma_young
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|570 x 17
  4422. MetaProViz::tissue_meta
    Tissue_Metadata
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|877 x 11
  4423. MetaProViz::tissue_norm
    tissue_norm
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|276 x 584
  4424. MetaProViz::tissue_norm_se
    tissue_norm_se
    rda| rds
    SummarizedExperiment
  4425. MetaProViz::tissue_tvn_proteomics
    tissue_tvn_proteomics
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|8769 x 10
  4426. MetaProViz::tissue_tvn_rnaseq
    tissue_tvn_rnaseq
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|29283 x 10
  4427. MetaScope::align_details
    A universal parameter settings object for Rsubread alignment
    csv| json| rda| rds
    list
  4428. MetaScope::bt2_16S_params
    A universal parameter object for Bowtie 2 16S alignment
    json| rda| rds
    character
  4429. MetaScope::bt2_missing_params
    A universal parameter object for Bowtie 2 metagenomic alignment where the host genome is thought to be absent from the reference database
    json| rda| rds
    character
  4430. MetaScope::bt2_regular_params
    A universal parameter object for Bowtie 2 metagenomic or non-16S alignment
    json| rda| rds
    character
  4431. metaSeq::BreastCancer
    Multiple RNA-Seq count data designed as Breast Cancer cell lines vs Normal cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23368 x 18
  4432. metaSeq::pvals
    P-values or probability calculated by DESeq, edgeR, baySeq, NOISeq, and DEGseq against StudyA
    csv| json| rda| rds
    list
  4433. metaSeq::Result.Meta
    Result of meta.oneside.noiseq against Brast Cancer data
    csv| json| rda| rds
    matrix|3 x 4
  4434. metaSeq::StudyA
    Count data of SRP008746
    json| rda| rds
    list
  4435. metaSeq::text.busca_unix
    One of C++ re-implimated components in NOISeq
    json| rda| rds
    character
  4436. metaSeq::text.busca_win
    One of C++ re-implimated components in NOISeq
    json| rda| rds
    character
  4437. metaSeq::text.n.menor_unix
    One of C++ re-implimated components in NOISeq
    json| rda| rds
    character
  4438. metaSeq::text.n.menor_win
    One of C++ re-implimated components in NOISeq
    json| rda| rds
    character
  4439. metaseqR2::hg19pvalues
    p-values from human RNA-Seq data with two conditions, four samples
    csv| json| rda| rds
    matrix|1000 x 9
  4440. metaseqR2::libsizeListMm9
    Mouse RNA-Seq data with two conditions, four samples
    csv| json| rda| rds
    list
  4441. metaseqR2::mm9GeneCounts
    Mouse RNA-Seq data with two conditions, four samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3787 x 12
  4442. metaseqR2::sampleListMm9
    Mouse RNA-Seq data with two conditions, four samples
    csv| json| rda| rds
    list
  4443. MetCirc::compartmentTissue
    Example data for 'MetCirc': 'compartmentTissue'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|259 x 10
  4444. MetCirc::convertExampleDF
    Example data for 'MetCirc': convertExampleDF
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 11
  4445. MetCirc::msp2spectra
    Example data for 'MetCirc': 'msp2spectra'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1024 x 2
  4446. MetCirc::sd01_outputXCMS
    Example data for 'MetCirc': 'sd01_outputXCMS'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1044 x 195
  4447. MetCirc::sd02_deconvoluted
    Example data for 'MetCirc': sd02_deconvoluted
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4743 x 4
  4448. MetCirc::similarityMat
    Example data for 'MetCirc': 'similarityMat'
    csv| json| rda| rds
    matrix|259 x 259
  4449. MetCirc::sps_tissue
    Example data for 'MetCirc': 'sps_tissue'
    rda| rds
    Spectra
  4450. MetCirc::tissue
    Example data for 'MetCirc': 'tissue'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37863 x 7
  4451. methimpute::arabidopsis_chromosomes
    Chromosome lengths for Arabidopsis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 2
  4452. methimpute::arabidopsis_genes
    Gene coordinates for Arabidopsis (chr1)
    rda| rds
    GRanges
  4453. methimpute::arabidopsis_TEs
    Transposable element coordinates for Arabidopsis (chr1)
    rda| rds
    GRanges
  4454. methimpute::arabidopsis_toydata
    Toy data for Arabidopsis (200.000bp of chr1)
    rda| rds
    GRanges
  4455. methInheritSim::dataSimExample
    A 'list' containing methylation information used by some internal functions (for demo purpose.
    rda| rds
    list
  4456. methInheritSim::samplesForChrSynthetic
    All samples information, formated by 'methylKit', in a 'methylBase' format (for demo purpose).
    csv| json| rda| rds
    methylBase|9864 x 40
  4457. methodical::chr1_subset_hg38
    chr1_subset_hg38
    rda| rds
    DNAStringSet
  4458. methodical::chr11_subset_hg38_cpgs
    chr11_subset_hg38_cpgs
    rda| rds
    GRanges
  4459. methodical::chr4_subset_a_thal
    chr4_subset_a_thal
    rda| rds
    DNAStringSet
  4460. methodical::hg19_chr18_cpgs
    hg19_chr18_cpgs
    rda| rds
    GRanges
  4461. methodical::hg38_cpg_islands
    hg38_cpg_islands
    rda| rds
    GRanges
  4462. methodical::infinium_450k_probe_granges_hg19
    infinium_450k_probe_granges_hg19
    rda| rds
    GRanges
  4463. methodical::tubb6_correlation_plot
    tubb6_correlation_plot
    rda| rds
    ggplot2::ggplot
  4464. methodical::tubb6_cpg_meth_transcript_cors
    tubb6_cpg_meth_transcript_cors
    csv| xlsx| json| ndjson| rda| rds
    data.frame|355 x 5
  4465. methodical::tubb6_meth_rse
    tubb6_meth_rse
    rda| rds
    call
  4466. methodical::tubb6_tmrs
    tubb6_tmrs
    rda| rds
    GRanges
  4467. methodical::tubb6_transcript_counts
    tubb6_transcript_counts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 126
  4468. methodical::tubb6_tss
    tubb6_tss
    rda| rds
    GRanges
  4469. MethPed::MethPed_900probes
    List of 900 probes in the predictor data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|900 x 1
  4470. MethPed::MethPed_sample
    Sample dataset to MethPed package.
    rda| rds
    ExpressionSet
  4471. methrix::methrix_data
    WGBS for colon cancer, chr21 and chr22
    rda| rds
    methrix
  4472. MethylAid::exampleData
    summarizedData object on 500 450k Human Methylation samples
    rda| rds
    summarizedData
  4473. MethylAidData::exampleDataLarge
    summarizedData object on 2800 450k Human Methylation samples
    rda| rds
    summarizedData
  4474. MethylAidData::MethylAidDataEPIC
    summarizedData object for 2620 EPIC Human Methylation samples
    rda| rds
    summarizedData
  4475. methylCC::FlowSorted.Blood.450k.sub
    A reduced size of the FlowSorted.Blood.450k dataset
    rda| rds
    RGChannelSet
  4476. methylCC::offMethRegions
    Unmethylated regions for all celltypes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10935 x 10
  4477. methylCC::onMethRegions
    Methylated regions for all celltypes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8513 x 10
  4478. methylclock::clock_catalog
    Catalogue of the clocks in the package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44 x 9
  4479. methylclock::methylclock_betas
    Example methylation beta matrix
    csv| json| rda| rds
    matrix|919 x 16
  4480. methylclock::methylclock_cells
    Clock estimates with blood cell proportions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|795 x 15
  4481. methylclock::methylclock_demo
    Example clock estimates for a public blood cohort
    csv| xlsx| json| ndjson| rda| rds
    data.frame|656 x 17
  4482. methylclock::methylclock_longitudinal
    A longitudinal example: children sampled repeatedly from birth to age 3
    csv| xlsx| json| ndjson| rda| rds
    data.frame|164 x 39
  4483. methylclock::methylclock_references
    Clock estimates on the shipped reference cohorts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2299 x 38
  4484. methylclock::methylclock_smoking
    Smoking predictor scores with smoking status
    csv| xlsx| json| ndjson| rda| rds
    data.frame|464 x 7
  4485. methylclock::methylclock_validation
    Clock estimates on two independent validation cohorts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|929 x 14
  4486. methylGSA::cpg.pval
    An example of user input cpg.pval
    json| rda| rds
    numeric
  4487. methylGSA::CpG2Gene
    An example of user user-supplied mapping between CpGs and genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|364645 x 2
  4488. methylGSA::GS.list
    An example of user input gene sets
    json| rda| rds
    list
  4489. methyLImp2::beta
    A subset of GSE199057 dataset for vignette demonstration
    csv| json| rda| rds
    matrix|24 x 6064
  4490. methyLImp2::beta_meta
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 42
  4491. methyLImp2::custom_anno_example
    An example of how custom (user provided) annotation data frame should look like
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 2
  4492. methylInheritance::demoForTransgenerationalAnalysis
    The methylation information from samples over three generations. Information for each generation is stored in a 'methylRawList' format (for demo purpose).
    json| rda| rds
    list
  4493. methylInheritance::methylInheritanceResults
    All observed and permutation results formatted in a 'methylInheritanceResults' class (for demo purpose).
    rda| rds
    methylInheritanceAllResults
  4494. methylInheritance::samplesForTransgenerationalAnalysis
    All samples information, formated by 'methylKit', in a 'methylRawList' format (for demo purpose).
    json| rda| rds
    list
  4495. methylKit::methylBase.obj
    Example methylBase object.
    csv| json| rda| rds
    methylBase|963 x 16
  4496. methylKit::methylDiff.obj
    Example methylKit objects.
    csv| json| rda| rds
    methylDiff|963 x 7
  4497. methylKit::methylRawList.obj
    Example methylRawList object.
    csv| json| rda| rds
    methylRawList
  4498. MethylMix::BatchData
    BatchData data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23263 x 3
  4499. MethylMix::GEcancer
    Cancer Gene expression data of glioblastoma patients from the TCGA project
    csv| json| rda| rds
    matrix|14 x 251
  4500. MethylMix::METcancer
    DNA methylation data from cancer tissue from glioblastoma patients from the TCGA project
    csv| json| rda| rds
    matrix|14 x 251
  4501. MethylMix::METnormal
    DNA methylation data from normal tissue from glioblastoma patients
    csv| json| rda| rds
    matrix|14 x 4
  4502. MethylMix::ProbeAnnotation
    ProbeAnnotation data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|365860 x 2
  4503. MethylMix::SNPprobes
    SNPprobes data set
    json| rda| rds
    character
  4504. methylscaper::human_bm
    Human gene symbols and positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60580 x 4
  4505. methylscaper::mouse_bm
    Mouse gene symbols and positions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55365 x 4
  4506. methylscaper::reads_sm
    Example reads from single-molecule experiment
    rda| rds
    list
  4507. methylscaper::ref_seq
    Example reference sequence to align reads to from a single-molecule experiment
    csv| rda| rds
    list
  4508. methylscaper::singlecell_subset
    Example preprocessed single-cell experiment subset
    json| rda| rds
    list
  4509. methylscaper::singlemolecule_example
    Example preprocessed single-molecule experiment
    csv| json| rda| rds
    list
  4510. methylSig::bsseq_destranded
    BSseq object read from destranded coverage files
    rda| rds
    BSseq
  4511. methylSig::bsseq_multichrom
    BSseq object with loci on multiple chromosomes
    rda| rds
    BSseq
  4512. methylSig::bsseq_stranded
    BSseq object read from stranded coverage files
    rda| rds
    BSseq
  4513. methylSig::promoters_gr
    GRanges object with collapsed promoters on chr21 and chr22
    rda| rds
    GRanges
  4514. methylumi::CpGs
    Data frame describing loci on the 27 and 450k arrays
    csv| xlsx| json| ndjson| rda| rds
    data.frame|487177 x 5
  4515. methylumi::mldat
    Example SAM format Illumina methylation dataset
    rda| rds
    MethyLumiSet
  4516. MetID::demo1
    Example of input dataset, in which colnames does not meet requirement.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 6
  4517. MetID::demo2
    Example of input dataset, in which colnames does not meet requirement.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3592 x 6
  4518. MetID::InchiKey
    Inchikey database.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101494 x 2
  4519. MetID::kegg_network
    Pairs of kegg network.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|57070 x 2
  4520. MetNet::mat_test
    Example data for 'MetNet': unit tests
    csv| json| rda| rds
    matrix|7 x 0
  4521. MetNet::mat_test_z
    Example data for 'MetNet': unit tests
    csv| json| rda| rds
    matrix|20 x 7
  4522. MetNet::peaklist
    Example data for 'MetNet': data input
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5067 x 122
  4523. MetNet::sps_sub
    Spectra data to test addSpectralSimilarity
    rda| rds
    Spectra
  4524. MetNet::x_annotation
    Example annotation for 'MetNet': data input
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 11
  4525. MetNet::x_test
    Example data for 'MetNet': data input
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 122
  4526. Mfuzz::yeast
    Gene expression data of the yeast cell cycle
    rda| rds
    ExpressionSet
  4527. Mfuzz::yeast.table
    Gene expression data of the yeast cell cycle as table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2952 x 18
  4528. Mfuzz::yeast.table2
    Gene expression data of the yeast cell cycle as table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2951 x 19
  4529. MGFM::ds2.mat
    Microarray gene expression data set
    csv| json| rda| rds
    matrix|22283 x 15
  4530. MGFR::ref.mat
    RNA-seq gene expression data set
    csv| json| rda| rds
    matrix|35287 x 15
  4531. mgsa::example_go
    Example GO sets for mgsa
    rda| rds
    MgsaSets
  4532. mgsa::example_o
    Example objects for mgsa
    json| rda| rds
    character
  4533. mia::dmn_se
    Twins' microbiome data from 278 individuals
    rda| rds
    SummarizedExperiment
  4534. mia::enterotype
    Human gut microbiome dataset from 22 subjects based on shotgun DNA sequencing
    rda| rds
    TreeSummarizedExperiment
  4535. mia::esophagus
    Human esophageal community from 3 individuals
    rda| rds
    TreeSummarizedExperiment
  4536. mia::GlobalPatterns
    Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample.
    rda| rds
    TreeSummarizedExperiment
  4537. mia::HintikkaXOData
    Multiomics dataset from 40 rat samples
    rda| rds
    MultiAssayExperiment
  4538. mia::ibdmdb
    IBDMDB 2-omic demo dataset (MGX + MTX)
    rda| rds
    MultiAssayExperiment
  4539. mia::peerj13075
    Skin microbial profiles 58 genetically unrelated individuals
    rda| rds
    TreeSummarizedExperiment
  4540. mia::Tengeler2020
    Gut microbiota profiles of 27 individuals with ADHD and healthy controls
    rda| rds
    TreeSummarizedExperiment
  4541. mia::Tito2024QMP
    Fecal microbiota samples from 589 patients across different colorectal cancer stages
    rda| rds
    TreeSummarizedExperiment
  4542. miaTime::crohn_survival
    Survival microbiome data from 150 individuals with longitudinal measurements
    rda| rds
    TreeSummarizedExperiment
  4543. miaTime::hitchip1006
    HITChip Atlas with 1006 Western Adults
    rda| rds
    TreeSummarizedExperiment
  4544. miaTime::HMP_2019_ibdmdb
    HMP_2019_ibdmdb
    rda| rds
    TreeSummarizedExperiment
  4545. miaTime::Kumaraswamy2024
    Kumaraswamy2024
    rda| rds
    TreeSummarizedExperiment
  4546. miaTime::minimalgut
    Human Gut Minimal Microbiome Profiling Data
    rda| rds
    TreeSummarizedExperiment
  4547. miaTime::SilvermanAGutData
    SilvermanAGutData
    rda| rds
    TreeSummarizedExperiment
  4548. miaTime::temporalMicrobiome20
    Gut Microbiome Profiling 20 Belgian Women
    rda| rds
    TreeSummarizedExperiment
  4549. miaViz::col_graph
    miaViz example data
    rda| rds
    tbl_graph
  4550. miaViz::row_graph
    miaViz example data
    rda| rds
    tbl_graph
  4551. miaViz::row_graph_order
    miaViz example data
    rda| rds
    tbl_graph
  4552. microbiome::atlas1006
    HITChip Atlas with 1006 Western Adults
    rda| rds
    phyloseq
  4553. microbiome::dietswap
    Diet Swap Data
    rda| rds
    phyloseq
  4554. microbiome::hitchip.taxonomy
    HITChip Taxonomy
    json| rda| rds
    list
  4555. microbiome::peerj32
    Probiotics Intervention Data
    rda| rds
    list
  4556. MicrobiomeBenchmarkData::sampleMetadata
    sampleMetadata
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|1125 x 35
  4557. MicrobiomeProfiler::microbiota_taxlist
    Example data: a vector of 54 bacterial genera tested for significantly between T2D metformin samples
    json| rda| rds
    integer
  4558. MicrobiomeProfiler::Psoriasis_data
    Example data: a vector of 134 significantly different functional COGs between Psoriasis patients and controls
    json| rda| rds
    character
  4559. MicrobiomeProfiler::Rat_data
    Example data: a vector of 91 KEGG Orthologies (KOs) showing significant associations with weaning weight
    json| rda| rds
    character
  4560. MicrobiotaProcess::kostic2012crc
    (Data) Genomic analysis identifies association of Fusobacterium with colorectal carcinoma (2012)
    rda| rds
    MPSE
  4561. MicrobiotaProcess::mouse.time.mpse
    (Data) An example data
    rda| rds
    MPSE
  4562. MicrobiotaProcess::test_otu_data
    (Data) simulated dataset.
    rda| rds
    MPSE
  4563. microRNA::hsSeqs
    Human Mature microRNA Sequences
    json| rda| rds
    character
  4564. microRNA::hsTargets
    Human microRNAs and their target IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|709015 x 6
  4565. microRNA::mmSeqs
    Mouse Mature microRNA Sequences
    json| rda| rds
    character
  4566. microRNA::mmTargets
    Mouse microRNAs and their target IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|519254 x 6
  4567. microRNA::s3utr
    Test sequence data
    json| rda| rds
    character
  4568. microRNAome::microRNAome
    MicroRNAome Data
    rda| rds
    SummarizedExperiment
  4569. MICSQTL::se
    Example data
    rda| rds
    SummarizedExperiment
  4570. midasHLA::allele_frequencies
    Alleles frequencies scraped from allelefrequencies.net
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150640 x 3
  4571. midasHLA::dict_dist_grantham
    Grantham distance
    json| rda| rds
    integer
  4572. midasHLA::kir_frequencies
    KIR genes frequencies scraped from allelefrequencies.net
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3744 x 3
  4573. midasHLA::MiDAS_tut_HLA
    MiDAS tutorial HLA data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 19
  4574. midasHLA::MiDAS_tut_KIR
    MiDAS tutorial KIR data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 17
  4575. midasHLA::MiDAS_tut_object
    MiDAS tutorial MiDAS object
    rda| rds
    MiDAS
  4576. midasHLA::MiDAS_tut_pheno
    MiDAS tutorial phenotype data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 4
  4577. miloR::sim_discrete
    sim_discrete
    rda| rds
    list
  4578. miloR::sim_family
    sim_family
    json| rda| rds
    list
  4579. miloR::sim_nbglmm
    sim_nbglmm
    csv| xlsx| json| ndjson| rda| rds
    data.frame|250 x 8
  4580. miloR::sim_trajectory
    Simulated linear trajectory data
    rda| rds
    list
  4581. mina::hmp_des
    Design file for HMP project, including 2711 samples in total.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2711 x 6
  4582. mina::hmp_otu
    OTU table of HMP project, data downloaded from https://www.hmpdacc.org/hmp/HMQCP/
    csv| json| rda| rds
    matrix|27627 x 2711
  4583. mina::maize
    Internal testing data of maize project, vegetative stage samples only, including quantitative table (maize_asv.rds) and descriptive table (maize_des.txt) for testing.
    rda| rds
    mina
  4584. mina::maize_asv
    ASV table of maize project, vegetative stage samples only.
    csv| json| rda| rds
    matrix|11098 x 437
  4585. mina::maize_asv2
    Subset of ASV table of maize project, ASVs appear in less than 100 samples were filtered for later analysis.
    csv| json| rda| rds
    matrix|1219 x 313
  4586. mina::maize_des
    Design file of maize project, vegetative stage samples only, including 528 samples in total.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|437 x 5
  4587. mina::maize_des2
    Subset of design file of maize project, 313 samples are included.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|313 x 5
  4588. minet::syn.data
    Simulated Gene Expression Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 50
  4589. minet::syn.net
    SynTReN Source Network
    csv| json| rda| rds
    matrix|50 x 50
  4590. minfiData::MsetEx
    An example dataset for Illumina's Human Methylation 450k dataset, after preprocessing.
    rda| rds
    MethylSet
  4591. minfiData::MsetEx.sub
    An example dataset for Illumina's Human Methylation 450k dataset, after preprocessing.
    rda| rds
    MethylSet
  4592. minfiData::RGsetEx
    An example dataset for Illumina's Human Methylation 450k dataset.
    rda| rds
    RGChannelSet
  4593. minfiData::RGsetEx.sub
    An example dataset for Illumina's Human Methylation 450k dataset.
    rda| rds
    RGChannelSet
  4594. minfiDataEPIC::MsetEPIC
    An example dataset for Illumina's Human Methylation EPIC dataset, after preprocessing.
    rda| rds
    MethylSet
  4595. minfiDataEPIC::RGsetEPIC
    An example dataset for the Illumina's Human Methylation EPIC platform.
    rda| rds
    RGChannelSet
  4596. MinimumDistance::md_exp
    An example 'MinDistExperiment'
    rda| rds
    MinDistExperiment
  4597. MinimumDistance::md_gr
    An example 'MinDistGRanges' object
    rda| rds
    MinDistGRanges
  4598. MinimumDistance::trioSetList
    An example 'TrioSetList' object
    rda| rds
    TrioSetList
  4599. minionSummaryData::s.typhi.rep1
    Summarised MinION sequencing data published by Ashton et al. [2015]
    rda| rds
    Fast5Summary
  4600. minionSummaryData::s.typhi.rep2
    Summarised MinION sequencing data published by Ashton et al. [2015]
    rda| rds
    Fast5Summary
  4601. minionSummaryData::s.typhi.rep3
    Summarised MinION sequencing data published by Ashton et al. [2015]
    rda| rds
    Fast5Summary
  4602. MiPP::colon
    Gene expression data for colon cancer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 62
  4603. MiPP::leuk1
    Gene expression data for leukemia
    csv| xlsx| json| ndjson| rda| rds
    data.frame|713 x 38
  4604. MiPP::leuk2
    Gene expression data for leukemia
    csv| xlsx| json| ndjson| rda| rds
    data.frame|713 x 34
  4605. miQC::metrics
    Basic scRNA-seq QC metrics from an ovarian tumor
    rda| rds
    DFrame
  4606. MIRA::bigBinDT1
    DNA methylation data for the "Applying MIRA to a Biological Question" vignette (1st part).
    csv| xlsx| json| ndjson| rda| rds
    data.table|252 x 5
  4607. MIRA::bigBinDT2
    DNA methylation data for the "Applying MIRA to a Biological Question" vignette (2nd part).
    csv| xlsx| json| ndjson| rda| rds
    data.table|1008 x 5
  4608. MIRA::exampleAnnoDT1
    A data.table with annotation for a bisulfite sample.
    csv| xlsx| json| ndjson| rda| rds
    data.table|1 x 2
  4609. MIRA::exampleAnnoDT2
    Annotation data for the "Applying MIRA to a Biological Question" vignette.
    csv| xlsx| json| ndjson| rda| rds
    data.table|24 x 2
  4610. MIRA::exampleBins
    A data.table with artificial binned methylation data
    csv| xlsx| json| ndjson| rda| rds
    data.table|22 x 6
  4611. MIRA::exampleBSDT
    A data.table containing DNA methylation data.
    csv| xlsx| json| ndjson| rda| rds
    data.table|4000 x 4
  4612. MIRA::exampleBSseqObj
    A small BSseq object.
    rda| rds
    BSseq
  4613. MIRA::exampleRegionSet
    A Granges object with Nrf1-binding regions.
    rda| rds
    GRanges
  4614. MiRaGE::gene_exp
    This ExpressionSet represents gene expression of lung cancer cell line one day after let-7a transfection.
    rda| rds
    ExpressionSet
  4615. miRBaseConverter::miRNATest
    Dataset: miRNA Test Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 2
  4616. miRcomp::lifetech
    The processed data generated using the LifeTech software.
    csv| json| rda| rds
    list
  4617. miRcomp::qpcRb4
    The processed data generated using the 4 parameter sigmoidal method from the qpcR software.
    csv| json| rda| rds
    list
  4618. miRcomp::qpcRb5
    The processed data generated using the 5 parameter sigmodial method from the qpcR software.
    csv| json| rda| rds
    list
  4619. miRcomp::qpcRdefault
    The processed data generated using the default method (4 parameter log-logistic) implemented in the qpcR software package.
    csv| json| rda| rds
    list
  4620. miRcomp::qpcRl5
    The processed data generated using the 5 parameter log-logistic method from the qpcR software.
    csv| json| rda| rds
    list
  4621. miRcomp::qpcRlinexp
    The processed data generated using the linear-exponential method implemented in the qpcR software package.
    csv| json| rda| rds
    list
  4622. miRcompData::miRcompData
    Data used in the miRcomp package.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1565652 x 9
  4623. mirIntegrator::augmented_pathways
    Signaling pathways augmented with miRNA.
    rda| rds
    list
  4624. mirIntegrator::GSE43592_miRNA
    Top table of preprocessed miRNA of GSE43592 dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|881 x 8
  4625. mirIntegrator::GSE43592_mRNA
    Top table of preprocessed mRNA of GSE43592 dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19611 x 8
  4626. mirIntegrator::kegg_pathways
    List of KEGG signaling pathways of human.
    rda| rds
    list
  4627. mirIntegrator::mirTarBase
    MicroRNA-target interactions in human.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39091 x 9
  4628. mirIntegrator::names_pathways
    List of KEGG signaling pathways' names.
    json| rda| rds
    character
  4629. MIRit::geneCounts
    Count matrix for gene expression in thyroid cancer
    csv| json| rda| rds
    matrix|23710 x 16
  4630. MIRit::mirnaCounts
    Count matrix for microRNA expression in thyroid cancer
    csv| json| rda| rds
    matrix|2576 x 16
  4631. miRNAmeConverter::example.miRNAs
    miRNA names.
    json| rda| rds
    character
  4632. miRNApath::mirnaobj
    mirnaobj, an S4 object of class "mirnapath"
    rda| rds
    mirnapath
  4633. miRNATarget::conv_id
    miRNA conservation table of mouse/human, based upon TargetScanMouse/Human 6.1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2578 x 2
  4634. miRNATarget::conv_id
    miRNA conservation table of mouse/human, based upon TargetScanMouse/Human 6.1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1908 x 2
  4635. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3433 x 2
  4636. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15846 x 2
  4637. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|59078 x 2
  4638. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36487 x 2
  4639. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36478 x 2
  4640. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17626 x 2
  4641. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21172 x 2
  4642. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21174 x 2
  4643. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11724 x 2
  4644. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8443 x 2
  4645. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4291 x 2
  4646. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8190 x 2
  4647. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|715258 x 2
  4648. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50369 x 2
  4649. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11592 x 2
  4650. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|62728 x 2
  4651. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10648 x 2
  4652. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39004 x 2
  4653. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|35570 x 2
  4654. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31842 x 2
  4655. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34851 x 2
  4656. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|519483 x 2
  4657. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41500 x 2
  4658. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33829 x 2
  4659. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41843 x 2
  4660. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44764 x 2
  4661. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41257 x 2
  4662. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40326 x 2
  4663. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40625 x 2
  4664. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45923 x 2
  4665. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45200 x 2
  4666. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36070 x 2
  4667. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45923 x 2
  4668. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100373 x 2
  4669. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64199 x 2
  4670. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2283 x 2
  4671. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79507 x 2
  4672. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54758 x 2
  4673. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38205 x 2
  4674. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|631498 x 2
  4675. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34653 x 2
  4676. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 2
  4677. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|78972 x 2
  4678. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1239 x 2
  4679. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 2
  4680. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37 x 2
  4681. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28203 x 2
  4682. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2852 x 2
  4683. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39507 x 2
  4684. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|59429 x 2
  4685. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37762 x 2
  4686. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44728 x 2
  4687. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12345 x 2
  4688. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13650 x 2
  4689. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9078 x 2
  4690. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10972 x 2
  4691. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2483 x 2
  4692. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4275 x 2
  4693. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28023 x 2
  4694. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11695 x 2
  4695. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|445638 x 2
  4696. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38194 x 2
  4697. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39547 x 2
  4698. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28023 x 2
  4699. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7463 x 2
  4700. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5054 x 2
  4701. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29790 x 2
  4702. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27399 x 2
  4703. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25264 x 2
  4704. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26076 x 2
  4705. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|244778 x 2
  4706. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29867 x 2
  4707. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26359 x 2
  4708. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29955 x 2
  4709. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30602 x 2
  4710. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79201 x 2
  4711. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38675 x 2
  4712. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43047 x 2
  4713. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80775 x 2
  4714. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 2
  4715. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1721 x 2
  4716. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29750 x 2
  4717. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29750 x 2
  4718. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29665 x 2
  4719. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6939 x 2
  4720. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44194 x 2
  4721. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26795 x 2
  4722. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|224487 x 2
  4723. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26962 x 2
  4724. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|57742 x 2
  4725. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|297 x 2
  4726. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|147 x 2
  4727. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame
  4728. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20834 x 2
  4729. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2213 x 2
  4730. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28437 x 2
  4731. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41380 x 2
  4732. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27113 x 2
  4733. miRNATarget::id_conv
    Conversion table between refseq and various gene id/probe id
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28472 x 2
  4734. miRNATarget::TBL2
    Target gene table miRNA
    csv| json| rda| rds
    matrix|35519 x 0
  4735. miRNATarget::TBL2
    Target gene table miRNA
    csv| json| rda| rds
    matrix|25667 x 0
  4736. miRSM::BRCA_genes
    BRCA genes
    rda| rds
    SummarizedExperiment
  4737. miRSM::ceRExp
    ceRNA expression data
    rda| rds
    SummarizedExperiment
  4738. miRSM::miRExp
    miRNA expression data
    rda| rds
    SummarizedExperiment
  4739. miRSM::miRTarget
    miRNA-target ineractions
    rda| rds
    SummarizedExperiment
  4740. miRSM::mRExp
    mRNA expression data
    rda| rds
    SummarizedExperiment
  4741. mirTarRnaSeq::Combine
    This is data is the mRNA expression across samples and miRNA expression data which is to be investigated in one file. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 97
  4742. mirTarRnaSeq::corr_0
    This is data is the mRNA FC and miRNA FC correlation data. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49776 x 3
  4743. mirTarRnaSeq::final_results
    This is data is the mRNA FC and miRNA FC correlation/interaction data results after filteration. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 5
  4744. mirTarRnaSeq::geneVariant
    This is data is the mRNA expression across samples and miRNA expression data which is to be investigated giving directions on which data is miRNA and which is mRNA. This data set is used in documentation examples.
    json| rda| rds
    character
  4745. mirTarRnaSeq::inter0
    This is data is the mRNA FC and miRNA FC correlation/interaction original data. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49776 x 3
  4746. mirTarRnaSeq::miRanda
    This is data is the results file from EBV miRanda getInputSpecies function. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|61893 x 6
  4747. mirTarRnaSeq::miRandaM
    This is data is the results file from mouse miRanda getInputSpecies function. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|92062 x 6
  4748. mirTarRnaSeq::miRNA
    This is data is the miRNA expression file. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 26
  4749. mirTarRnaSeq::miRNA_fc
    This is data is the combined miRNA FC for all time points. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|408 x 3
  4750. mirTarRnaSeq::miRNA_fc2
    This data is the miRNA fold change data set for difference or interrelation section. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|408 x 1
  4751. mirTarRnaSeq::miRNA0_2
    This is data is the miRNA0_2 FC for 0-2 time point. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|408 x 2
  4752. mirTarRnaSeq::miRNA0_5
    This is data is the miRNA0_5 FC for 0-5 time point. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|408 x 2
  4753. mirTarRnaSeq::miRNA2_5
    This is data is the miRNA2_5 FC for 2-5 time point. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|408 x 2
  4754. mirTarRnaSeq::mRNA
    This is data is the mRNA expression file. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 25
  4755. mirTarRnaSeq::mRNA_fc
    This is data is the combined mRNA FC for all time points. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|122 x 3
  4756. mirTarRnaSeq::mRNA_fc2
    This data is the mRNA fold change data set for difference or interrelation section. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|122 x 1
  4757. mirTarRnaSeq::mRNA0_2
    This is data is the mRNA0_2 FC for 0-2 time point. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22658 x 3
  4758. mirTarRnaSeq::mRNA0_5
    This is data is the mRNA0_5 FC for 0-5 time point. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22634 x 3
  4759. mirTarRnaSeq::mRNA2_5
    This is data is the mRNA2_5 FC for 2-5 time point. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22834 x 3
  4760. mirTarRnaSeq::outs
    This is data is the output file resulted from time point/conditions background correlation model. This data set is used in documentation examples.
    json| rda| rds
    numeric
  4761. mirTarRnaSeq::outs2
    This is data is the output file resulted from time point/conditions background difference/interelation model. This data set is used in documentation examples.
    json| rda| rds
    numeric
  4762. mirTarRnaSeq::results
    This is data is the output file resulted from time point or conditions or correlation or interrelation model. This data set is used in documentation examples.
    json| rda| rds
    list
  4763. mirTarRnaSeq::sig_corrs
    This is data is the output file resulted from time point or conditions experiment for correlation model after filtering and threshold modification. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8212 x 3
  4764. mirTarRnaSeq::sig_InterR
    This is data is the output file resulted from time point or conditions experiment for interrelation model after filtering and threshold modification. This data set is used in documentation examples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2484 x 3
  4765. mirTarRnaSeq::some_model
    This is data is the results file from regression analysis and its estimates. This data set is used in documentation examples.
    rda| rds
    glm
  4766. missRows::NCI60
    Data of the NCI-60 Cell Lines with Missing Individuals
    rda| rds
    list
  4767. mistyR::synthetic
    Synthetic benchmark data for mistyR
    csv| json| rda| rds
    list
  4768. mitch::genesetsExample
    Reactome gene sets
    json| rda| rds
    list
  4769. mitch::k36a
    H3K36ac profile
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 4
  4770. mitch::k9a
    H3K9ac profile
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 4
  4771. mitch::myImportedData
    myImportedData: Example imported profiles
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 3
  4772. mitch::myList
    myList: A list of three edgeR results
    csv| json| rda| rds
    list
  4773. mitch::resExample
    resExample: Example mitch result
    json| rda| rds
    list
  4774. mitch::rna
    RNA profile
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 4
  4775. mitoClone2::M_P1
    Mitochondrial exclusionlist
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1430 x 16
  4776. mitoClone2::M_P2
    Mitochondrial exclusionlist
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1066 x 22
  4777. mitoClone2::N_P1
    Mitochondrial exclusionlist
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1430 x 16
  4778. mitoClone2::N_P2
    Mitochondrial exclusionlist
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1066 x 22
  4779. mitology::MitoGenesDB
    Mitochondrial genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2996 x 3
  4780. mitology::ovse
    Example expression data.
    rda| rds
    SummarizedExperiment
  4781. mixOmics::breast.TCGA
    Breast Cancer multi omics data from TCGA
    json| rda| rds
    list
  4782. mixOmics::breast.tumors
    Human Breast Tumors Data
    json| rda| rds
    list
  4783. mixOmics::diverse.16S
    16S microbiome data: most diverse bodysites from HMP
    json| rda| rds
    list
  4784. mixOmics::Koren.16S
    16S microbiome atherosclerosis study
    json| rda| rds
    list
  4785. mixOmics::linnerud
    Linnerud Dataset
    csv| json| rda| rds
    list
  4786. mixOmics::liver.toxicity
    Liver Toxicity Data
    json| rda| rds
    list
  4787. mixOmics::multidrug
    Multidrug Resistence Data
    json| rda| rds
    list
  4788. mixOmics::nutrimouse
    Nutrimouse Dataset
    json| rda| rds
    list
  4789. mixOmics::srbct
    Small version of the small round blue cell tumors of childhood data
    json| rda| rds
    list
  4790. mixOmics::stemcells
    Human Stem Cells Data
    json| rda| rds
    list
  4791. mixOmics::vac18
    Vaccine study Data
    json| rda| rds
    list
  4792. mixOmics::vac18.simulated
    Simulated data based on the vac18 study for multilevel analysis
    json| rda| rds
    list
  4793. mixOmics::yeast
    Yeast metabolomic study
    json| rda| rds
    list
  4794. MLInterfaces::brennan_2013_tabS7exc
    Clinical characterization of 158 GBM samples from https://doi.org/10.1016/j.cell.2013.09.034 supp table S7
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 16
  4795. MLSeq::cervical
    Cervical cancer data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|714 x 58
  4796. MMDiff2::MMD
    DBAmmd Object for Cfp1 example
    rda| rds
    DBAmmd
  4797. MMUPHin::CRC_abd
    Species level feature abundance data of five public CRC studies
    csv| json| rda| rds
    matrix|484 x 551
  4798. MMUPHin::CRC_meta
    Sample metadata of five public CRC studies
    csv| xlsx| json| ndjson| rda| rds
    data.frame|551 x 28
  4799. MMUPHin::vaginal_abd
    Species level feature abundance data of two public vaginal studies
    csv| json| rda| rds
    matrix|119 x 86
  4800. MMUPHin::vaginal_meta
    Sample metadata of two public vaginal studies
    csv| xlsx| json| ndjson| rda| rds
    data.frame|86 x 24
  4801. mnem::app
    Processed scRNAseq from pooled CRISPR screens
    rda| rds
    list
  4802. mobileRNA::mRNA_data
    mRNA_data: simulated messenger RNA data for biological replicates
    csv| xlsx| json| ndjson| rda| rds
    data.table|7153 x 17
  4803. mobileRNA::sRNA_data
    sRNA_data: simulated data for biological replicates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11985 x 29
  4804. MODA::datExpr1
    datExpr1
    csv| json| rda| rds
    matrix|20 x 500
  4805. MODA::datExpr2
    datExpr2
    csv| json| rda| rds
    matrix|25 x 500
  4806. ModCon::cds
    CDS of firefly luciferase
    json| rda| rds
    character
  4807. ModCon::Codons
    Table of codons and encoded amino acids
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64 x 4
  4808. ModCon::hbg
    Donor sequences and their HBS
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|262144 x 3
  4809. ModCon::hex
    Hexamers and Z scores
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4096 x 7
  4810. Modstrings::MOD_RNA_DICT_MODOMICS
    Modstrings internals
    rda| rds
    DFrame
  4811. Modstrings::MOD_RNA_DICT_TRNADB
    Modstrings internals
    rda| rds
    DFrame
  4812. Modstrings::modsDNA
    Modstrings internals
    rda| rds
    DFrame
  4813. Modstrings::modsRNA
    Modstrings internals
    rda| rds
    DFrame
  4814. MOFAdata::CLL_covariates
    CLL_covariates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 2
  4815. MOFAdata::CLL_data
    CLL_data
    json| rda| rds
    list
  4816. MOFAdata::MSigDB_v6.0_C2_human
    MSigDB_v6.0_C2_human
    csv| json| rda| rds
    matrix|1329 x 0
  4817. MOFAdata::MSigDB_v6.0_C2_mouse
    MSigDB_v6.0_C2_mouse
    csv| json| rda| rds
    matrix|4731 x 0
  4818. MOFAdata::MSigDB_v6.0_C5_human
    MSigDB_v6.0_C5_human
    csv| json| rda| rds
    matrix|4436 x 0
  4819. MOFAdata::MSigDB_v6.0_C5_mouse
    MSigDB_v6.0_C5_mouse
    csv| json| rda| rds
    matrix|4436 x 0
  4820. MOFAdata::reactomeGS
    reactomeGS
    csv| json| rda| rds
    matrix|1304 x 0
  4821. MOFAdata::scMT_data
    scMT_data
    rda| rds
    MultiAssayExperiment
  4822. mogsa::NCI60_4array_supdata
    supp data for Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
    json| rda| rds
    list
  4823. mogsa::NCI60_4arrays
    Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
    csv| json| rda| rds
    list
  4824. MoleculeExperiment::small_me
    A subsetted Xenium dataset include for demostration purposes.
    rda| rds
    MoleculeExperiment
  4825. MOMA::example.gbm.mae
    Glioblastoma (GBM) Example Dataset
    rda| rds
    MultiAssayExperiment
  4826. MOMA::gbm.pathways
    Glioblastoma (GBM) Pathways
    json| rda| rds
    list
  4827. MOMA::gene.map
    Gene Location Mapping
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41703 x 4
  4828. MOMA::mutSig
    MutSig Blacklisted genes
    json| rda| rds
    character
  4829. monocle::spike_df
    Spike-in transcripts data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|92 x 7
  4830. Moonlight2R::cscape_somatic_output
    Cscape-somatic annotations of TCGA-LUAD
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|645 x 7
  4831. Moonlight2R::DAPsmatrix
    Differentially abundant proteins
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4873 x 4
  4832. Moonlight2R::dataDMA
    Output example from the function Driver Mutation Analysis
    json| rda| rds
    list
  4833. Moonlight2R::dataFEA
    Functional enrichment analysis with ORA method
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 7
  4834. Moonlight2R::dataFEA_fgsea
    Functional enrichment analysis with fgsea method
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 9
  4835. Moonlight2R::dataFilt
    Gene expression data from TCGA-LUAD
    csv| json| rda| rds
    matrix|3000 x 20
  4836. Moonlight2R::dataGLS
    Literature search of driver genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|13 x 8
  4837. Moonlight2R::dataGMA
    Output example from GMA function
    csv| json| rda| rds
    list
  4838. Moonlight2R::dataGRN
    Gene regulatory network
    json| rda| rds
    list
  4839. Moonlight2R::dataGRN_no_noise
    Gene regulatory network
    json| rda| rds
    list
  4840. Moonlight2R::dataMAF
    Mutation data from TCGA LUAD
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 141
  4841. Moonlight2R::dataMAVISp
    MAVISp dataset example
    json| rda| rds
    list
  4842. Moonlight2R::dataMethyl
    Methylation data matrix from TCGA-LUAD project
    csv| json| rda| rds
    matrix|73 x 27
  4843. Moonlight2R::dataPRA
    Output example from function Pattern Recognition Analysis
    json| rda| rds
    list
  4844. Moonlight2R::dataURA
    Upstream regulator analysis
    csv| json| rda| rds
    matrix|20 x 2
  4845. Moonlight2R::dataURA_plot
    Upstream regulator analysis
    csv| json| rda| rds
    matrix|12 x 2
  4846. Moonlight2R::DEG_Methylation_Annotations
    Output example from GMA function
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3435 x 35
  4847. Moonlight2R::DEG_Mutations_Annotations
    Differentially expressed genes's Mutations
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3561 x 173
  4848. Moonlight2R::DEGsmatrix
    Differentially expressed genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3390 x 5
  4849. Moonlight2R::DiseaseList
    Cancer-related biological processes
    csv| json| rda| rds
    list
  4850. Moonlight2R::EAGenes
    Information about genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20038 x 5
  4851. Moonlight2R::EncodePromoters
    Promoters
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|84738 x 6
  4852. Moonlight2R::EpiMix_Results_Regular
    Output example from GMA function
    json| rda| rds
    list
  4853. Moonlight2R::GEO_TCGAtab
    Information on GEO and TCGA data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 12
  4854. Moonlight2R::knownDriverGenes
    Information of known cancer driver genes from COSMIC
    json| rda| rds
    list
  4855. Moonlight2R::listMoonlight
    List of oncogenic mediators of 5 TCGA cancer types
    json| rda| rds
    list
  4856. Moonlight2R::LOC_protein
    Level of Consequence: Protein
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 7
  4857. Moonlight2R::LOC_transcription
    Level of Consequence: Transcription
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 7
  4858. Moonlight2R::LOC_translation
    Level of Consequence: Translation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 7
  4859. Moonlight2R::LUAD_sample_anno
    Sample annotations of TCGA-LUAD project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 2
  4860. Moonlight2R::MetEvidenceDriver
    Methylation evidence table to define driver genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 6
  4861. Moonlight2R::NCG
    Network of Cancer Genes 7.0
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|3347 x 7
  4862. Moonlight2R::Oncogenic_mediators_methylation_summary
    Output example from GMA function
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|25 x 7
  4863. Moonlight2R::Oncogenic_mediators_mutation_summary
    Oncogenic Mediators Mutation Summary
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|12 x 15
  4864. Moonlight2R::tabGrowBlock
    Information of growing/blocking characteristics of 101 biological processes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 3
  4865. MoonlightR::dataFilt
    Gene Expression (Rnaseqv2) data from TCGA LUAD
    csv| json| rda| rds
    matrix|13742 x 20
  4866. MoonlightR::dataGRN
    GRN gene regulatory network output
    json| rda| rds
    list
  4867. MoonlightR::dataURA
    Output example from function Upstram Regulator Analysis
    csv| json| rda| rds
    matrix|100 x 2
  4868. MoonlightR::DEGsmatrix
    DEG Differentially expressed genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3390 x 5
  4869. MoonlightR::DiseaseList
    Information on 101 biological processes
    csv| json| rda| rds
    list
  4870. MoonlightR::EAGenes
    Information about genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20038 x 5
  4871. MoonlightR::GDCprojects
    Information on GDC projects
    json| rda| rds
    character
  4872. MoonlightR::geneInfo
    Information about genes for normalization
    csv| json| rda| rds
    matrix|20531 x 3
  4873. MoonlightR::GEO_TCGAtab
    Information on GEO data (and overlap with TCGA)#' A data set containing the following data:
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 12
  4874. MoonlightR::knownDriverGenes
    Information on known cancer driver gene from COSMIC
    json| rda| rds
    list
  4875. MoonlightR::listMoonlight
    Output list from Moonlight
    json| rda| rds
    list
  4876. MoonlightR::tabGrowBlock
    Information growing/blocking characteristics for 101 selected biological processes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|101 x 3
  4877. MOSClip::multiOmics
    Omics class object with TCGA ovarian data
    rda| rds
    Omics
  4878. MOSClip::multiOmicsTopo
    Omics class object with TCGA ovarian data for topological analysis
    rda| rds
    Omics
  4879. MOSClip::ovarianDataset
    ExperimentList class object with TCGA ovarian data
    rda| rds
    ExperimentList
  4880. MOSClip::reactSmall
    PathwayList of pathways from Reactome
    rda| rds
    PathwayList
  4881. mosdef::res_enrich_macrophage_cluPro
    A sample enrichment object
    rda| rds
    enrichResult
  4882. mosdef::res_enrich_macrophage_goseq
    A sample enrichment object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14789 x 10
  4883. mosdef::res_enrich_macrophage_topGO
    A sample enrichment object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6116 x 9
  4884. mosdef::res_macrophage_IFNg_vs_naive
    A sample 'DESeqResults' object
    rda| rds
    DESeqResults
  4885. MOSim::associationList
    Data to showcase scRNA and scATAC-seq association
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10000 x 2
  4886. MOSim::sampleData
    Default data
    json| rda| rds
    list
  4887. MOSim::scatac
    Data to test scMOSim
    csv| json| rda| rds
    matrix|108377 x 40
  4888. MOSim::scrna
    Data to test scMOSim
    csv| json| rda| rds
    matrix|36601 x 40
  4889. MOSim::TF_human
    Data to extract human TF
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16634 x 2
  4890. motifbreakR::encodemotif
    MotifDb object containing motif information from the known and discovered motifs for the ENCODE TF ChIP-seq datasets
    rda| rds
    MotifList
  4891. motifbreakR::example.results
    Example Results from motifbreakR
    rda| rds
    GRanges
  4892. motifbreakR::factorbook
    MotifDb object containing motif information from around the genomic regions bound by 119 human transcription factors in Factorbook
    rda| rds
    MotifList
  4893. motifbreakR::hocomoco
    MotifDb object containing motif information from Homo Sapiens Comprehensive Model Collection (HOCOMOCO) of transcription factor (TF) binding models
    rda| rds
    MotifList
  4894. motifbreakR::homer
    MotifDb object containing motif information from motif databases included in HOMER
    rda| rds
    MotifList
  4895. motifbreakR::motifbreakR_motif
    MotifDb object containing motif information from the motif databases of HOCOMOCO, Homer, FactorBook and ENCODE
    rda| rds
    MotifList
  4896. motifmatchr::example_motifs
    example_motifs
    rda| rds
    PFMatrixList
  4897. MotifPeeker::CTCF_ChIP_peaks
    Example ChIP-seq peak file
    rda| rds
    GRanges
  4898. MotifPeeker::CTCF_TIP_peaks
    Example TIP-seq peak file
    rda| rds
    GRanges
  4899. MotifPeeker::motif_MA1102.3
    Example CTCFL JASPAR motif file
    rda| rds
    universalmotif
  4900. MotifPeeker::motif_MA1930.2
    Example CTCF JASPAR motif file
    rda| rds
    universalmotif
  4901. motifTestR::ar_er_peaks
    A set of peaks with AR and ER detected
    rda| rds
    GRanges
  4902. motifTestR::ar_er_seq
    Sequences from peaks with AR and ER detected
    rda| rds
    DNAStringSet
  4903. motifTestR::ex_pfm
    Example Position Frequency Matrices
    json| rda| rds
    list
  4904. motifTestR::hg19_mask
    Regions from hg19 with high N content
    rda| rds
    GRanges
  4905. motifTestR::zr75_enh
    Candidate Enhancer Regions from ZR-75-1 Cells
    rda| rds
    GRanges
  4906. mouse4302barcodevecs::bcparams
    mouse4302 data for barcode
    csv| json| rda| rds
    matrix|45037 x 0
  4907. MPFE::patternsExample
    patternsExample
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 3
  4908. mpra::mpraSetAggExample
    Example data for the mpra package.
    rda| rds
    MPRASet
  4909. mpra::mpraSetAllelicExample
    Example data for the mpra package.
    rda| rds
    MPRASet
  4910. mpra::mpraSetExample
    Example data for the mpra package.
    rda| rds
    MPRASet
  4911. MPRAnalyze::ce.colAnnot
    Sample MPRA data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 3
  4912. MPRAnalyze::ce.control
    Sample MPRA data
    json| rda| rds
    logical
  4913. MPRAnalyze::ce.dnaCounts
    Sample MPRA data
    csv| json| rda| rds
    matrix|110 x 40
  4914. MPRAnalyze::ce.rnaCounts
    Sample MPRA data
    csv| json| rda| rds
    matrix|110 x 40
  4915. MSA2dist::AAMatrix
    AAMatrix-data
    csv| json| rda| rds
    matrix|27 x 27
  4916. MSA2dist::hiv
    hiv-data
    rda| rds
    DNAStringSet
  4917. MSA2dist::iupac
    iupac-data
    rda| rds
    DNAStringSet
  4918. msd16s::msd16s
    Curated dataset of many healthy and moderate-to-severe diarretic gut 16s samples on the 454 FLEX platform.
    rda| rds
    MRexperiment
  4919. msdata::fdms3tmt11
    Proteomics data in 'msdata'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|994 x 45
  4920. msdata::xs
    Sample FTICR, LC/MS and MS$^n$ data
    rda| rds
    xcmsSet
  4921. MsFeatures::se
    Quantified LC-MS preprocessing result test data
    rda| rds
    SummarizedExperiment
  4922. msgbsR::cuts
    A GRanges object of differentially methylated MspI cut sites on chromosome 20 in Rat from a MS-GBS experiment.
    rda| rds
    GRanges
  4923. msgbsR::ratdata
    Read counts of potential MspI cut sites from a MS-GBS experiment of prostates from rats
    rda| rds
    RangedSummarizedExperiment
  4924. msgbsR::ratdata2
    Read counts of correct MspI cut sites from a MS-GBS experiment of prostates from rats
    rda| rds
    RangedSummarizedExperiment
  4925. msImpute::pxd007959
    Processed peptide intensity matrix and experimental design table from PXD007959 study
    json| rda| rds
    list
  4926. msImpute::pxd010943
    SWATH-MS Analysis of Gfi1-mutant bone marrow neutrophils
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2357 x 13
  4927. msImpute::pxd014777
    Processed peptide intensity matrix from PXD014777 study
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2883 x 212
  4928. mslp::example_comp_mut
    Patients mutations to be use in the comp_slp
    csv| xlsx| json| ndjson| rda| rds
    data.table|138 x 2
  4929. mslp::example_compSLP
    SLPs predicted by comp_slp
    csv| xlsx| json| ndjson| rda| rds
    data.table|61 x 6
  4930. mslp::example_corr_mut
    Patients mutations to be use in the corr_slp
    csv| xlsx| json| ndjson| rda| rds
    data.table|114 x 2
  4931. mslp::example_corrSLP
    SLPs predicted by corr_slp
    csv| xlsx| json| ndjson| rda| rds
    data.table|591 x 5
  4932. mslp::example_expr
    Expression data to be used in comp_slp
    csv| json| rda| rds
    matrix|290 x 41
  4933. mslp::example_z
    Expression data to be used in corr_slp
    csv| json| rda| rds
    matrix|290 x 41
  4934. MSMB::brcalymphnode
    Coordinates and cell types in a histopathology slide of a breast cancer patient's lymph node
    csv| xlsx| json| ndjson| rda| rds
    data.frame|209462 x 3
  4935. MSMB::ukraine_coords
    Coordinates of and pairwise distances between hero cities and oblast capitals in Ukraine
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|33 x 14
  4936. MSMB::ukraine_dists
    Coordinates of and pairwise distances between hero cities and oblast capitals in Ukraine
    rda| rds
    dist
  4937. msmsEDA::msms.dataset
    LC-MS/MS dataset
    rda| rds
    MSnSet
  4938. msmsEDA::pnms
    Accessions and gene symbols
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1160 x 2
  4939. msmsTests::msms.spk
    Yeast lisate samples spiked with human proteins
    rda| rds
    MSnSet
  4940. MSnbase::iTRAQ4
    iTRAQ 4-plex set
    rda| rds
    ReporterIons
  4941. MSnbase::iTRAQ5
    iTRAQ 4-plex set
    rda| rds
    ReporterIons
  4942. MSnbase::iTRAQ8
    iTRAQ 4-plex set
    rda| rds
    ReporterIons
  4943. MSnbase::iTRAQ9
    iTRAQ 4-plex set
    rda| rds
    ReporterIons
  4944. MSnbase::itraqdata
    Example 'MSnExp' and 'MSnSet' data sets
    rda| rds
    MSnExp
  4945. MSnbase::msnset
    Example 'MSnExp' and 'MSnSet' data sets
    rda| rds
    MSnSet
  4946. MSnbase::msnset2
    Example 'MSnExp' and 'MSnSet' data sets
    rda| rds
    MSnSet
  4947. MSnbase::naset
    Quantitative proteomics data imputation
    rda| rds
    MSnSet
  4948. MSnbase::TMT10
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4949. MSnbase::TMT10ETD
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4950. MSnbase::TMT10HCD
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4951. MSnbase::TMT11
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4952. MSnbase::TMT11HCD
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4953. MSnbase::TMT16
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4954. MSnbase::TMT16HCD
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4955. MSnbase::TMT6
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4956. MSnbase::TMT6b
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4957. MSnbase::TMT7
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4958. MSnbase::TMT7b
    TMT 6/10-plex sets
    rda| rds
    ReporterIons
  4959. MSnID::msnidObj
    Example mzIdenML File and MSnID Object
    rda| rds
    MSnID
  4960. mspms::all_possible_8mers_from_228_library
    all_possible_8mers_from_228_library All possible 8mers from the standard (as of 26April2024) 228 MSP-MS peptide library (This is equivalent to the result of mspms::calculate_all_cleavages(mspms::peptide_library$real_cleavage_seq,n=4)) vector of the 14 AA peptides used in the library.
    json| rda| rds
    character
  4961. mspms::colData
    colData A tibble containing the colData associated with an experiment to proc
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|12 x 4
  4962. mspms::log2fc_t_test_data
    log2fc_t_test_data A tibble containing the results of t-tests and log2fc compared to time 0 14,497 × 19
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4142 x 21
  4963. mspms::mspms_tidy_data
    mspms_tidy_data A tibble containing tidy data derived from QFeatures object
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|24852 x 13
  4964. mspms::peaks_prepared_data
    peaks_prepared_data A QFeatures object prepared from PEAKS data of cathepsin data/.
    rda| rds
    QFeatures
  4965. mspms::peptide_library
    peptide_library
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|228 x 3
  4966. mspms::processed_qf
    processed_qf A QFeatures object prepared from PEAKS data of Cathepsin data that has been processed (imputation/normalization)
    rda| rds
    QFeatures
  4967. msqc1::msqc1_8rep
    MSQC1 8 technical replicates
    csv| xlsx| json| ndjson| rda| rds
    msqc1|6272 x 16
  4968. msqc1::msqc1_8rep_QEXACTIVEHF_assayDevel
    QEXACTIVEHF peptide signal response.
    csv| xlsx| json| ndjson| rda| rds
    msqc1|1864 x 16
  4969. msqc1::msqc1_8rep_tripleTOF5600_assayDevel
    tripleTOF5600 peptide signal response
    csv| xlsx| json| ndjson| rda| rds
    msqc1|1616 x 17
  4970. msqc1::msqc1_dil
    msqc1 dilution series
    csv| xlsx| json| ndjson| rda| rds
    msqc1|15300 x 15
  4971. msqc1::msqc1_userstudy
    msqc1 user study
    csv| xlsx| json| ndjson| rda| rds
    msqc1|21204 x 17
  4972. msqc1::peptides
    sigma mix peptides
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 5
  4973. msqrob2::pe
    Example data for 100 proteins
    rda| rds
    QFeatures
  4974. MsQuality::meta
    Example data for 'MsQuality': data set of Lee et al. (2019)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|432 x 9
  4975. MsQuality::msexp_hilic
    Example data for 'MsQuality': data set of Lee et al. (2019)
    rda| rds
    MsExperiment
  4976. MsQuality::msexp_rplc
    Example data for 'MsQuality': data set of Lee et al. (2019)
    rda| rds
    MsExperiment
  4977. MsQuality::sps_hilic
    Example data for 'MsQuality': data set of Lee et al. (2019)
    rda| rds
    Spectra
  4978. MsQuality::sps_rplc
    Example data for 'MsQuality': data set of Lee et al. (2019)
    rda| rds
    Spectra
  4979. MsQuality::vals
    Example data for 'MsQuality': data set of Lee et al. (2019)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|448 x 639
  4980. MSstats::DDARawData
    Example dataset from a label-free DDA, a controlled spike-in experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2070 x 10
  4981. MSstats::DDARawData.Skyline
    Example dataset from a label-free DDA, a controlled spike-in experiment, processed by Skyline.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11934 x 12
  4982. MSstats::DIARawData
    Example dataset from a label-free DIA, a group comparison study of S.Pyogenes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|980 x 10
  4983. MSstats::example_SDRF
    Example SDRF.
    csv| xlsx| json| ndjson| rda| rds
    data.table|160 x 28
  4984. MSstats::SRMRawData
    Example dataset from a SRM experiment with stable isotope labeled reference of a time course yeast study
    csv| xlsx| json| ndjson| rda| rds
    data.frame|720 x 10
  4985. MSstatsLiP::LiPRawData
    LiPRawData
    csv| xlsx| json| ndjson| rda| rds
    data.table|422 x 29
  4986. MSstatsLiP::MSstatsLiP_data
    MSstatsLiP_data
    json| rda| rds
    list
  4987. MSstatsLiP::MSstatsLiP_model
    MSstatsLiP_model
    json| rda| rds
    list
  4988. MSstatsLiP::MSstatsLiP_Summarized
    MSstatsLiP_Summarized
    json| rda| rds
    list
  4989. MSstatsLiP::raw_lip
    raw_lip
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|6944 x 29
  4990. MSstatsLiP::raw_prot
    raw_prot
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|9120 x 29
  4991. MSstatsLiP::SkylineTest
    SkylineTest
    csv| xlsx| json| ndjson| rda| rds
    data.table|2115 x 13
  4992. MSstatsLiP::TrPRawData
    TrPRawData
    csv| xlsx| json| ndjson| rda| rds
    data.table|911 x 29
  4993. MSstatsLOBD::raw_data
    Example of dataset that contains spike in data for 43 distinct peptides.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3870 x 16
  4994. MSstatsLOBD::spikeindata
    Example of normalized datasets from raw_data,
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|30 x 4
  4995. MSstatsPTM::fragpipe_annotation
    Example annotation file for a TMT FragPipe experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 7
  4996. MSstatsPTM::fragpipe_annotation_protein
    Example annotation file for a global profiling run TMT FragPipe experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 7
  4997. MSstatsPTM::fragpipe_input
    Output of FragPipe TMT PTM experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|346 x 29
  4998. MSstatsPTM::fragpipe_input_protein
    Output of FragPipe TMT global profiling experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47 x 27
  4999. MSstatsPTM::maxq_lf_annotation
    Example annotation file for a label-free MaxQuant experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33 x 5
  5000. MSstatsPTM::maxq_lf_evidence
    Example MaxQuant evidence file from the output of a label free experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|492 x 63
  5001. MSstatsPTM::maxq_tmt_annotation
    Example annotation file for a TMT MaxQuant experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 7
  5002. MSstatsPTM::maxq_tmt_evidence
    Example MaxQuant evidence file from the output of a TMT experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|199 x 96
  5003. MSstatsPTM::pd_annotation
    Example annotation file for a label-free Proteome Discoverer experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 3
  5004. MSstatsPTM::pd_psm_input
    Example Proteome Discoverer evidence file from the output of a label free experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1657 x 60
  5005. MSstatsPTM::pd_testing_output
    Example output of Proteome Discoverer converter
    csv| json| rda| rds
    list
  5006. MSstatsPTM::raw.input
    Example of input PTM dataset for LabelFree/DDA/DIA experiments.
    csv| json| rda| rds
    list
  5007. MSstatsPTM::raw.input.tmt
    Example of input PTM dataset for TMT experiments.
    json| rda| rds
    list
  5008. MSstatsPTM::spectronaut_annotation
    Example annotation file for a label-free Spectronaut experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 5
  5009. MSstatsPTM::spectronaut_input
    Example Spectronaut evidence file from the output of a label free experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2683 x 23
  5010. MSstatsPTM::summary.data
    Example of output from dataSummarizationPTM function for non-TMT data
    json| rda| rds
    list
  5011. MSstatsPTM::summary.data.tmt
    Example of output from dataSummarizationPTM_TMT function for TMT data
    json| rda| rds
    list
  5012. MSstatsQC::QCloudDDA
    DDA QC data from QCloud System
    csv| xlsx| json| ndjson| rda| rds
    data.frame|390 x 8
  5013. MSstatsQC::QCloudSRM
    SRM QC data from QCloud System
    csv| xlsx| json| ndjson| rda| rds
    data.frame|387 x 7
  5014. MSstatsQC::QuiCDIA
    DIA iRT data from QuiC System
    csv| xlsx| json| ndjson| rda| rds
    data.frame|528 x 30
  5015. MSstatsQC::S9Site54
    CPTAC study 9.1 site 54 dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|676 x 8
  5016. MSstatsQCgui::S9Site54
    CPTAC study 9.1 site 54 dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|676 x 8
  5017. MSstatsResponse::DIA_MSstats_Normalized
    Example pre-processed DIA-MS dataset
    json| rda| rds
    list
  5018. MSstatsShiny::annotation.mine
    Example annotation file for Spectromine
    csv| xlsx| json| ndjson| rda| rds
    data.frame|72 x 7
  5019. MSstatsShiny::annotation.mq
    Example annotation file for MaxQuant
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 7
  5020. MSstatsShiny::annotation.pd
    Example annotation file for PD
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 7
  5021. MSstatsShiny::dia_skyline_model
    Example of Sklyine DDA dataset modeled using MSstats 'groupComparison' function.
    rda| rds
    list
  5022. MSstatsShiny::dia_skyline_summarized
    Example of Sklyine DDA dataset processed using MSstats summarization function.
    json| rda| rds
    list
  5023. MSstatsShiny::evidence
    Example evidence file for MaxQuant
    csv| xlsx| json| ndjson| rda| rds
    data.table|1075 x 105
  5024. MSstatsShiny::example_dia_skyline
    Example of input Sklyine DDA dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41820 x 16
  5025. MSstatsShiny::example_skyline_annotation
    Example annotation file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 3
  5026. MSstatsShiny::proteinGroups
    Example ProteinGroups file for MaxQuant
    csv| xlsx| json| ndjson| rda| rds
    data.table|8 x 611
  5027. MSstatsShiny::raw.mine
    Example output file Spectromine
    csv| xlsx| json| ndjson| rda| rds
    data.frame|170 x 28
  5028. MSstatsShiny::raw.om
    Example output file Spectromine
    csv| xlsx| json| ndjson| rda| rds
    data.frame|860 x 13
  5029. MSstatsShiny::raw.pd
    Example output file PD
    csv| xlsx| json| ndjson| rda| rds
    data.table|2858 x 50
  5030. MSstatsShiny::tmt_pd_model
    Example of TMT dataset modeled using MSstatsTMT 'groupComparisonTMT' function.
    rda| rds
    list
  5031. MSstatsShiny::tmt_pd_summarized
    Example of TMT dataset processed using MSstatsTMT summarization function.
    json| rda| rds
    list
  5032. MSstatsTMT::input.pd
    Example dataset in MSstatsTMT format.
    csv| json| rda| rds
    MSstatsValidated|20360 x 11
  5033. MSstatsTMT::quant.pd.msstats
    Example of output from proteinSummarizaiton function
    json| rda| rds
    list
  5034. MSstatsTMT::test.pairwise
    Example of output from groupComparisonTMT function
    json| rda| rds
    list
  5035. mtbls2::mtbls2Set
    Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants
    rda| rds
    xcmsSet
  5036. MUGAExampleData::call.rate.batch
    Call rates and batch information for Svenson et.al samples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|141 x 3
  5037. MUGAExampleData::FinalReport1
    Allele call and intensity data for the first set of MUGA samples.
    json| rda| rds
    character
  5038. MUGAExampleData::FinalReport2
    Allele call and intensity data for the second set of MUGA samples.
    json| rda| rds
    character
  5039. MUGAExampleData::geno
    Allele calls for Svenson et.al samples.
    csv| json| rda| rds
    matrix|141 x 0
  5040. MUGAExampleData::model.probs
    Founder haplotype probabilities for the Svenson et.al. data.
    json| rda| rds
    array
  5041. MUGAExampleData::pheno
    Phenotype data for Svenson et.al samples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|149 x 142
  5042. MUGAExampleData::Samples1
    Sample list for the first MUGA data set.
    json| rda| rds
    character
  5043. MUGAExampleData::Samples2
    Sample list for the second MUGA data set.
    json| rda| rds
    character
  5044. MUGAExampleData::x
    X allele intensities for Svenson et.al samples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|141 x 0
  5045. MUGAExampleData::y
    Y allele intensities for Svenson et.al samples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|141 x 0
  5046. Mulcom::Affy
    Affy Dataset
    rda| rds
    ExpressionSet
  5047. Mulcom::AffyIlmn
    cross mapping table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11298 x 7
  5048. Mulcom::limmaAffySymbols
    significant gene list with limma in Affymetrix
    json| rda| rds
    factor
  5049. Mulcom::limmaIlmnSymbols
    significant gene list with limma in Illumina
    json| rda| rds
    factor
  5050. Mulcom::mulcomGeneListIlmn
    significant gene list with limma in Illumina
    json| rda| rds
    character
  5051. Mulcom::samAffySymbols
    significant gene list with SAM in Affymetrix
    json| rda| rds
    factor
  5052. Mulcom::samIlmnSymbols
    significant gene list with SAM in Illumina
    json| rda| rds
    factor
  5053. MultiAssayExperiment::miniACC
    Adrenocortical Carcinoma (ACC) MultiAssayExperiment
    rda| rds
    MultiAssayExperiment
  5054. MultiBaC::A.gro
    Transcription rate data from yeast
    csv| json| rda| rds
    matrix|200 x 6
  5055. MultiBaC::A.rna
    Gene expression data from yeast
    csv| json| rda| rds
    matrix|200 x 6
  5056. MultiBaC::B.ribo
    Gene translation rate data from yeast
    csv| json| rda| rds
    matrix|200 x 4
  5057. MultiBaC::B.rna
    Gene expression data from yeast
    csv| json| rda| rds
    matrix|200 x 4
  5058. MultiBaC::C.par
    Protein binded mRNA data from yeast
    csv| json| rda| rds
    matrix|200 x 4
  5059. MultiBaC::C.rna
    Gene expression data from yeast
    csv| json| rda| rds
    matrix|200 x 4
  5060. MultiDataSet::rset
    Example 'ResultSet'
    rda| rds
    ResultSet
  5061. multiGSEA::metabolome
    Metabolomic data set that is used in the toy example provided by the 'multiGSEA' package.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4881 x 4
  5062. multiGSEA::proteome
    Proteomic data set that is used in the toy example provided by the 'multiGSEA' package.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|8274 x 4
  5063. multiGSEA::transcriptome
    Transcriptomic data set that is used in the toy example provided by the 'multiGSEA' package.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|15174 x 4
  5064. multiHiCcompare::HCT116_r1
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56603 x 4
  5065. multiHiCcompare::HCT116_r2
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|57010 x 4
  5066. multiHiCcompare::HCT116_r3
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56744 x 4
  5067. multiHiCcompare::HCT116_r4
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54307 x 4
  5068. multiHiCcompare::HCT116_r5
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55092 x 4
  5069. multiHiCcompare::HCT116_r6
    A 4 column sparse matrix for a Hi-C matrix.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55581 x 4
  5070. multiHiCcompare::hg19_cyto
    A GenomicRanges object containing centromeric, gvar, and stalk regions.
    rda| rds
    GRanges
  5071. multiHiCcompare::hg38_cyto
    A GenomicRanges object containing centromeric, gvar, and stalk regions.
    rda| rds
    GRanges
  5072. multiHiCcompare::hicexp_diff
    hicexp object with 7 samples from two groups.
    rda| rds
    Hicexp
  5073. multiHiCcompare::hicexp2
    hicexp object with 4 samples from two groups.
    rda| rds
    Hicexp
  5074. MultiMed::NavyAdenoma
    Data from the Sinha et al. 1999 and Boca et al. 2014 studies concerning the Navy Colorectal Adenoma case-control study.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|258 x 155
  5075. MultimodalExperiment::pbRNAseq
    MultimodalExperiment Example Data
    csv| json| rda| rds
    matrix|3000 x 1
  5076. MultimodalExperiment::scADTseq
    MultimodalExperiment Example Data
    csv| json| rda| rds
    matrix|8 x 5000
  5077. MultimodalExperiment::scRNAseq
    MultimodalExperiment Example Data
    csv| json| rda| rds
    matrix|3000 x 5000
  5078. MultiRNAflow::RawCounts_Antoszewski2022_MOUSEsub500
    Mouse raw counts data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 13
  5079. MultiRNAflow::RawCounts_Leong2014_FISSIONsub500wt
    Yeast times series raw counts data after stimulation with and without silencing
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 19
  5080. MultiRNAflow::RawCounts_Schleiss2021_CLLsub500
    Human CCL times series raw counts data after stimulation with and without silencing
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 55
  5081. MultiRNAflow::RawCounts_Weger2021_MOUSEsub500
    Mouse count data with four biological conditions, six time measurements and 500 genes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 97
  5082. MultiRNAflow::Results_DEanalysis_sub500
    DE results of three dataset
    rda| rds
    list
  5083. MultiRNAflow::Transcript_HomoSapiens_Database
    Homo sapiens transcript database
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40452 x 2
  5084. multiscan::murine
    A subset of murine macrophage gene expression data from Khondoker et al.(2006).
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 4
  5085. multiWGCNA::permutationTestResults
    Permutation test results
    csv| json| rda| rds
    list
  5086. multtest::golub
    Gene expression dataset from Golub et al. (1999)
    csv| json| rda| rds
    matrix|3051 x 0
  5087. multtest::golub.cl
    Gene expression dataset from Golub et al. (1999)
    json| rda| rds
    numeric
  5088. multtest::golub.gnames
    Gene expression dataset from Golub et al. (1999)
    csv| json| rda| rds
    matrix|3051 x 0
  5089. MungeSumstats::sumstatsColHeaders
    Summary Statistics Column Headers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|410 x 2
  5090. muscat::example_sce
    Example datasets
    rda| rds
    SingleCellExperiment
  5091. muscle::umax
    Unaligned MAX sequences
    rda| rds
    DNAStringSet
  5092. musicatk::cosmic_v2_sigs
    COSMIC v2 SBS96 Signatures Result Object
    rda| rds
    result_model
  5093. musicatk::cosmic_v3_dbs_sigs
    COSMIC v3 DBS Genome Signatures Result Object
    rda| rds
    result_model
  5094. musicatk::cosmic_v3_indel_sigs
    COSMIC v3 Indel Genome Signatures Result Object
    rda| rds
    result_model
  5095. musicatk::cosmic_v3_sbs_sigs
    COSMIC v3 SBS96 Genome Signatures Result Object
    rda| rds
    result_model
  5096. musicatk::cosmic_v3_sbs_sigs_exome
    COSMIC v3 SBS96 Exome Signatures Result Object
    rda| rds
    result_model
  5097. musicatk::dbs_musica
    dbs_musica
    rda| rds
    musica
  5098. musicatk::example_predicted_exp
    example_predicted_exp
    csv| json| rda| rds
    matrix|8 x 214
  5099. musicatk::example_predicted_sigs
    example_predicted_sigs
    csv| json| rda| rds
    matrix|96 x 8
  5100. musicatk::full_benchmark_example
    full_benchmark_example
    rda| rds
    full_benchmark
  5101. musicatk::indel_musica
    indel_musica
    rda| rds
    musica
  5102. musicatk::musica
    musica
    rda| rds
    musica
  5103. musicatk::musica_annot
    musica_annot
    rda| rds
    musica
  5104. musicatk::musica_sbs96
    musica_sbs96
    rda| rds
    musica
  5105. musicatk::musica_sbs96_tiny
    musica_sbs96_tiny
    rda| rds
    musica
  5106. musicatk::rep_range
    Replication Timing Data as GRanges Object
    rda| rds
    GRanges
  5107. musicatk::res
    res
    rda| rds
    musica
  5108. musicatk::res_annot
    res_annot
    rda| rds
    musica
  5109. musicatk::synthetic_breast_counts
    synthetic_breast_counts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 214
  5110. musicatk::synthetic_breast_true_exposures
    synthetic_breast_true_exposures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|214 x 8
  5111. mvoutData::ILM1
    raw expression data for evaluation of outlier detection algorithms
    rda| rds
    LumiBatch
  5112. mvoutData::s12c
    raw expression data for evaluation of outlier detection algorithms
    rda| rds
    AffyBatch
  5113. MWASTools::KEGG_metabolic_paths
    KEGG human metabolic pathways
    json| rda| rds
    list
  5114. MWASTools::metabo_SE
    NMR plasma metabolic profiles dataset
    rda| rds
    SummarizedExperiment
  5115. MWASTools::MS_data
    Simulated LC-MS features
    csv| json| rda| rds
    matrix|6485 x 2
  5116. MWASTools::targetMetabo_SE
    Target NMR metabolites dataset
    rda| rds
    SummarizedExperiment
  5117. NADfinder::single.count
    Counts data for chromosome 18 for an experiment of a single pair of samples
    rda| rds
    RangedSummarizedExperiment
  5118. NADfinder::triplicate.count
    Counts data for chromosome 18 for an expriment with triplicates
    rda| rds
    RangedSummarizedExperiment
  5119. NanoporeRNASeq::HsChr22BambuAnnotation
    BambuAnnotation of the first half of Human Sapiens Chr22
    rda| rds
    CompressedGRangesList
  5120. NanoporeRNASeq::SGNexSamples
    SG-Nex samples from Nanopore RNA-Seq
    rda| rds
    DFrame
  5121. NanoStringDiff::NanoStringData
    A real 'NanoStringSet' object.
    rda| rds
    NanoStringSet
  5122. NanoTube::ExamplePathways
    Example pathway database
    json| rda| rds
    list
  5123. NanoTube::ExampleResults
    Example results from runLimmaAnalysis
    rda| rds
    MArrayLM
  5124. nanotubes::nanotubes
    CAGE data from mouse nanotube experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11 x 4
  5125. ncGTW::xcmsExamples
    Examples of xcmsSet for inputs of ncGTW
    rda| rds
    list
  5126. NCIgraph::NCI.demo.cyList
    10 raw NCI networks from Nature curated pathways and BioCarta imported as graphNEL objects, for demonstration purpose
    rda| rds
    list
  5127. NCIgraphData::NCI.cyList
    Raw NCI networks from Nature curated pathways and BioCarta imported as graphNEL objects
    rda| rds
    list
  5128. NCIgraphData::reactome.cyList
    Raw NCI networks from reactome as graphNEL objects
    rda| rds
    list
  5129. NetActivityData::gtex_gokegg
    Weights of GO_KEGG model trained with GTEx samples
    csv| json| rda| rds
    matrix|1518 x 0
  5130. NetActivityData::gtex_gokegg_annot
    Annotation of GO_KEGG model trained with GTEx samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1518 x 4
  5131. NetActivityData::tcga_gokegg
    Weights of GO_KEGG model trained with TCGA samples
    csv| json| rda| rds
    matrix|1518 x 0
  5132. NetActivityData::tcga_gokegg_annot
    Annotation of GO_KEGG model trained with TCGA samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1518 x 4
  5133. netboost::tcga_aml_meth_rna_chr18
    TCGA RNA and methylation measurement on a subset of chromosome 18 for 80 AML patients.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80 x 500
  5134. NetPathMiner::ex_biopax
    Biopax example data
    rda| rds
    biopax
  5135. NetPathMiner::ex_kgml_sig
    Singaling network from KGML example
    rda| rds
    igraph
  5136. NetPathMiner::ex_microarray
    An microarray data example.
    csv| json| rda| rds
    matrix|281 x 126
  5137. NetPathMiner::ex_sbml
    Metabolic network from SBML example
    rda| rds
    igraph
  5138. netresponse::dna
    Dna damage data set (PPI and expression)
    json| rda| rds
    list
  5139. netresponse::osmo
    Osmoshock data set (PPI and expression)
    json| rda| rds
    list
  5140. netresponse::toydata
    toydata
    rda| rds
    list
  5141. NetSAM::netsam_output
    An example of the list object returned by NetSAM function
    json| rda| rds
    list
  5142. netSmooth::human.ppi
    Human Protein-Protein interaction graph
    rda| rds
    dgCMatrix
  5143. netSmooth::mouse.ppi
    Mouse Protein-Protein interaction graph
    rda| rds
    dgCMatrix
  5144. netSmooth::smallPPI
    A small human Protein-Protein interaction graph for use in examples.
    csv| json| rda| rds
    matrix|611 x 0
  5145. netSmooth::smallscRNAseq
    A small single cell RNA-seq dataset for use in examples.
    rda| rds
    SingleCellExperiment
  5146. netZooR::bladder
    Bladder RNA-seq data from the GTEx consortium
    rda| rds
    ExpressionSet
  5147. netZooR::exon.size
    Gene length
    json| rda| rds
    integer
  5148. netZooR::genes
    Example of a gene list
    json| rda| rds
    character
  5149. netZooR::monsterRes
    MONSTER results from example cell-cycle yeast transition
    rda| rds
    monsterAnalysis
  5150. netZooR::mut.ucec
    Example of mutation data
    csv| rda| rds
    table|248 x 0
  5151. netZooR::skin
    Skin RNA-seq data from the GTEx consortium
    rda| rds
    ExpressionSet
  5152. netZooR::small1976
    Pollinator-plant interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|442 x 3
  5153. netZooR::TIGER_expr
    TIGER example expression matrix
    csv| json| rda| rds
    matrix|1780 x 16
  5154. netZooR::TIGER_prior
    TIGER example prior network
    csv| json| rda| rds
    matrix|14 x 0
  5155. netZooR::yeast
    Toy data derived from three gene expression datasets and a mapping from transcription factors to genes.
    json| rda| rds
    list
  5156. Neve2006::neveCGHmatch
    Neve Cancer Cell 2006 expression plus CGH data
    rda| rds
    cghSet
  5157. Neve2006::neveExCGH
    Neve Cancer Cell 2006 expression plus CGH data
    rda| rds
    cghExSet
  5158. Neve2006::neveRMAmatch
    Neve Cancer Cell 2006 expression plus CGH data
    rda| rds
    ExpressionSet
  5159. ngsReports::gcTheoretical
    Theoretical GC content
    rda| rds
    TheoreticalGC
  5160. nipalsMCIA::data_blocks
    NCI-60 Multi-Omics Data
    json| rda| rds
    list
  5161. nipalsMCIA::metadata_NCI60
    NCI-60 Multi-Omics Metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 1
  5162. NOISeq::mybiotypes
    Marioni's dataset
    json| rda| rds
    character
  5163. NOISeq::mychroms
    Marioni's dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5088 x 3
  5164. NOISeq::mycounts
    Marioni's dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5088 x 10
  5165. NOISeq::mydata
    Example of objects used and created by the NOISeq package
    rda| rds
    ExpressionSet
  5166. NOISeq::myfactors
    Marioni's dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 2
  5167. NOISeq::mygc
    Marioni's dataset
    json| rda| rds
    numeric
  5168. NOISeq::mylength
    Marioni's dataset
    json| rda| rds
    numeric
  5169. NOISeq::mynoiseq
    Example of objects used and created by the NOISeq package
    rda| rds
    Output
  5170. nondetects::nature2008
    The qPCR data from McMurray _et al._ Nature 2008.
    rda| rds
    qPCRset
  5171. nondetects::oncogene2013
    The qPCR data from Sampson _et al._ Oncogene 2013.
    rda| rds
    qPCRset
  5172. nondetects::sagmb2011
    The qPCR data from Almudevar _et al._ SAGMB 2011.
    rda| rds
    qPCRset
  5173. NoRCE::brain_disorder_ncRNA
    Differentially expressed non-coding gene
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1363 x 1
  5174. NoRCE::brain_mirna
    Differentially expressed human brain data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|407 x 1
  5175. NoRCE::breastmRNA
    Protein coding genes that are differentially expressed in TCGA breast cancer RNAseq data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|667 x 1
  5176. NoRCE::mirna
    Brain miRNA expression retrieved from the TCGA
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|527 x 183
  5177. NoRCE::mrna
    Brain mRNA expression retrieved from the TCGA
    csv| xlsx| json| ndjson| rda| rds
    data.frame|527 x 150
  5178. NoRCE::ncRegion
    Differentially expressed non-coding gene regions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|930 x 5
  5179. NoRCE::tad_dmel
    TAD regions for the fly
    rda| rds
    GRanges
  5180. NoRCE::tad_hg19
    TAD regions for human hg19 assembly
    rda| rds
    GRanges
  5181. NoRCE::tad_hg38
    TAD regions for human hg38 assembly
    rda| rds
    GRanges
  5182. NoRCE::tad_mm10
    TAD regions for mouse
    rda| rds
    GRanges
  5183. NormalyzerDE::example_data
    Small example dataset used to demonstrate code consistency in testing and as dummy data in the vignette.
    csv| json| rda| rds
    matrix|100 x 12
  5184. NormalyzerDE::example_data
    Small example dataset used to demonstrate code consistency in testing and as dummy data in the vignette.
    csv| json| rda| rds
    matrix|101 x 33
  5185. NormalyzerDE::example_data_only_values
    Same data as in "example_data", but omitting the annotation meaning that it only contains the expression data.
    csv| json| rda| rds
    matrix|100 x 6
  5186. NormalyzerDE::example_data_only_values
    Same data as in "example_data", but omitting the annotation meaning that it only contains the expression data.
    csv| json| rda| rds
    matrix|100 x 27
  5187. NormalyzerDE::example_design
    Design matrix corresponding to the small example datasets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 3
  5188. NormalyzerDE::example_design
    Design matrix corresponding to the small example datasets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27 x 3
  5189. NormalyzerDE::example_stat_data
    Same data as in "example_data", but normalized and ready for statistical processing.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 33
  5190. NormalyzerDE::example_stat_summarized_experiment
    SummarizedExperiment object prepared with design-matrix, data-matrix and annotation columns for normalized data
    rda| rds
    SummarizedExperiment
  5191. NormalyzerDE::example_summarized_experiment
    SummarizedExperiment object prepared with design-matrix, data-matrix and annotation columns loaded for raw data
    rda| rds
    SummarizedExperiment
  5192. NormalyzerDE::example_wide_data
    Full raw NormalyzerDE matrix used for internal testing
    csv| json| rda| rds
    matrix|100 x 33
  5193. NormalyzerDE::example_wide_design
    Design matrix belonging together with example_wide_data. Used for internal testing.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27 x 3
  5194. NormqPCR::Bladder
    Bladder dataset of Andersen et al (2004)
    rda| rds
    qPCRBatch
  5195. NormqPCR::BladderRepro
    Dataset of Andersen et al (2004)
    rda| rds
    qPCRBatch
  5196. NormqPCR::Colon
    Colon dataset of Andersen et al (2004)
    rda| rds
    qPCRBatch
  5197. NormqPCR::geNorm.qPCRBatch
    Data set of Vandesompele et al (2002)
    rda| rds
    qPCRBatch
  5198. notame::hilic_neg_sample
    Toy data set
    rda| rds
    SummarizedExperiment
  5199. notame::hilic_pos_sample
    Toy data set
    rda| rds
    SummarizedExperiment
  5200. notame::rp_neg_sample
    Toy data set
    rda| rds
    SummarizedExperiment
  5201. notame::rp_pos_sample
    Toy data set
    rda| rds
    SummarizedExperiment
  5202. notame::toy_notame_set
    Toy data set
    rda| rds
    SummarizedExperiment
  5203. NPARC::stauro_TPP_data_tidy
    TPP dataset of staurosporine treated cells.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|307080 x 7
  5204. NTW::sos.data
    SOS pathway perturbation data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 9
  5205. nucleR::nucleosome_htseq
    Example reads from high-troughtput sequencing nucleosome positioning experiment
    rda| rds
    GRanges
  5206. nucleR::nucleosome_tiling
    Example intensities from Tiling Microarray nucleosome positioning experiment
    json| rda| rds
    numeric
  5207. nullrangesData::sc_promoter
    Chromium Single Cell Multiome ATAC + Gene Expression assay
    rda| rds
    GRanges
  5208. nullrangesData::sc_rna
    Chromium Single Cell Multiome ATAC + Gene Expression assay
    rda| rds
    GRanges
  5209. OAtools::example_se
    Example OpenArray Gene Expression Data Contained in a SummarizedExperiment
    rda| rds
    SummarizedExperiment
  5210. occugene::sampleAnnotation
    Annotation for a Hypothetical Prokayote
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 4
  5211. occugene::sampleInsertions
    Insertions for a Hypothetical Clonal Library
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 1
  5212. octad::res_example
    Differential expression example for HCC vs adjacent liver tissue computed in diffExp() function
    csv| xlsx| json| ndjson| rda| rds
    data.frame|963 x 18
  5213. octad::sRGES_example
    Data of computed example sRGEs for HCC vs liver adjacent tissues on octad.small dataset
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|12442 x 6
  5214. odseq::seqs
    PFAM plus random data.
    rda| rds
    AAStringSet
  5215. oligoClasses::efsExample
    ExpressionFeatureSet Object
    rda| rds
    ExpressionFeatureSet
  5216. oligoClasses::locusLevelData
    Basic data elements required for the HMM
    json| rda| rds
    list
  5217. oligoClasses::oligoSet
    An example instance of oligoSnpSet class
    rda| rds
    oligoSnpSet
  5218. oligoClasses::scqsExample
    SnpCnvQSet Example
    rda| rds
    SnpCnvQSet
  5219. oligoClasses::sfsExample
    SnpFeatureSet Example
    rda| rds
    SnpFeatureSet
  5220. oligoClasses::sqsExample
    SnpQSet Example
    rda| rds
    SnpQSet
  5221. OLIN::sw
    cDNA microarray data of SW480/SW620 experiment
    rda| rds
    marrayRaw
  5222. OLIN::sw.olin
    Normalised cDNA microarray data of SW480/SW620 experiment
    rda| rds
    marrayNorm
  5223. OLIN::sw.xy
    Spatial coordinates of spot locations of SW480/SW620 experiment
    csv| json| rda| rds
    list
  5224. omada::toy_gene_memberships
    Cluster memberships for toy gene data for package examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 2
  5225. omada::toy_genes
    Toy gene data for package examples
    csv| json| rda| rds
    matrix|100 x 24
  5226. OmaDB::group
    An example OMA group object.
    json| rda| rds
    list
  5227. OmaDB::hog
    An example HOG object.
    json| rda| rds
    list
  5228. OmaDB::orthologs
    An example orthologs object.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 15
  5229. OmaDB::pairs
    An example genome alignment object.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 27
  5230. OmaDB::protein
    An example protein object.
    rda| rds
    list
  5231. OmaDB::sequence_annotation
    An example dataframe containing GO annotations identified from a given sequence.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 13
  5232. OmaDB::sequence_map
    An example dataframe containing proteins identified from a given sequence.
    rda| rds
    list
  5233. OmaDB::taxonomy
    An example newick format taxonomy object.
    json| rda| rds
    list
  5234. OmaDB::xref
    An example xref object.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2257 x 8
  5235. omicade4::NCI60_4arrays
    Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
    csv| json| rda| rds
    list
  5236. OmicCircos::TCGA.BC_Her2_cnv_exp
    TCGA BRCA expression and cnv association
    csv| xlsx| json| ndjson| rda| rds
    data.frame|250 x 7
  5237. OmicCircos::TCGA.BC.cnv.2k.60
    copy number data of TCGA Breast Cancer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|250 x 63
  5238. OmicCircos::TCGA.BC.fus
    TCGA Breast Cancer gene fusion data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 7
  5239. OmicCircos::TCGA.BC.gene.exp.2k.60
    TCGA BRCA expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|250 x 63
  5240. OmicCircos::TCGA.BC.sample60
    TCGA BRCA Sample names and subtypes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 2
  5241. OmicCircos::TCGA.PAM50_genefu_hg18
    BRCA PAM50 gene list (hg18)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 8
  5242. OmicCircos::UCSC.chr.colors
    chromosome banding colors
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 2
  5243. OmicCircos::UCSC.hg18
    human hg18 circumference coordinates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 7
  5244. OmicCircos::UCSC.hg18.chr
    human hg18 segment data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  5245. OmicCircos::UCSC.hg19
    human hg19 circumference coordinates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 7
  5246. OmicCircos::UCSC.hg19.chr
    human hg19 segment data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  5247. OmicCircos::UCSC.mm10
    mouse mm10 circumference coordinates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 7
  5248. OmicCircos::UCSC.mm10.chr
    mouse mm10 segment data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|403 x 5
  5249. OmicCircos::UCSC.mm9
    mouse mm9 circumference coordinates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 7
  5250. OmicCircos::UCSC.mm9.chr
    mouse mm9 segment data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|403 x 5
  5251. omicplotR::metadata
    Vaginal microbiome OTU table metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|297 x 35
  5252. omicplotR::otu_table
    Vaginal microbiome OTU table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|77 x 0
  5253. omicRexposome::asr
    'ResultSet' for testing and illustration purpouses
    rda| rds
    ResultSet
  5254. omicRexposome::crs
    'ResultSet' for testing and illustration purpouses
    rda| rds
    ResultSet
  5255. omicRexposome::mds
    'MultiDataSet' for testing and illustration purpouses
    rda| rds
    MultiDataSet
  5256. OMICsPCAdata::clustered_data
    cluster object
    csv| json| rda| rds
    matrix|300 x 5
  5257. OMICsPCAdata::groupinfo_ext
    An out put of create_group
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28770 x 1
  5258. OMICsPCAdata::multi_assay
    Example data sets
    rda| rds
    MultiAssayExperiment
  5259. OMICsPCAdata::transcript_details
    details of GENCODE(v 17) TSSs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|194871 x 8
  5260. omicsPrint::hg19.GoNLsnps
    Dataframe with overlaps GoNL variants and 450K probes
    rda| rds
    DFrame
  5261. omicsPrint::hm450.manifest.pop.GoNL
    HM450 population-specific probe-masking recommendations
    rda| rds
    GRanges
  5262. omXplore::sub_R25
    Feature example data
    rda| rds
    MultiAssayExperiment
  5263. omXplore::vdata
    Feature example data
    rda| rds
    MultiAssayExperiment
  5264. oncomix::exprNmlIsof
    Human Breast Cancer RNA-sequencing data from TCGA - Adj. Normal Tissue
    csv| json| rda| rds
    matrix|700 x 113
  5265. oncomix::exprTumIsof
    Human Breast Cancer RNA-sequencing data from TCGA - Tumor Tissue
    csv| json| rda| rds
    matrix|700 x 113
  5266. oncomix::queryRes
    Oncogene Database Mapping Gene Symbol to UCSC ID (kgID)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3108 x 2
  5267. oncoscanR::cntypes
    Accepted types of CN for the segments - 'Gain': 1-2 extra copies - 'Weak amplification': 3-7 extra copies - 'Strong amplification': 8 or more extra copies - 'Heterozygote loss': Loss of one copy out of two - 'Homozygote loss': Loss of all copies - 'LOH': copy-neutral loss of one parental allele
    csv| json| rda| rds
    list
  5268. oncoscanR::oncoscan_na33.cov
    GenomicRanges object of the chromosomal arms coverage for the oncoscan assay (based on file extdata/Oncoscan.na33.r2.cov.processed.bed).
    rda| rds
    GRanges
  5269. oncoscanR::segs.chas_example
    Expected segments from loading the ChAS file 'chas_example.txt'.
    rda| rds
    GRanges
  5270. OncoScore::genes
    A list of genes
    json| rda| rds
    character
  5271. OncoScore::query
    The result of perform.web.query on genes
    csv| json| rda| rds
    matrix|5 x 2
  5272. OncoScore::query.timepoints
    The result of perform.time.series.query on genes and timepoints
    csv| json| rda| rds
    list
  5273. OncoScore::timepoints
    A list of timepoints
    json| rda| rds
    character
  5274. OncoSimulR::atex2b
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5275. OncoSimulR::atex4
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5276. OncoSimulR::atex5
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5277. OncoSimulR::benchmark_1
    Summary results from some benchmarks reported in the vignette.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 39
  5278. OncoSimulR::benchmark_1_0.05
    Summary results from some benchmarks reported in the vignette.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 39
  5279. OncoSimulR::benchmark_2
    Summary results from some benchmarks reported in the vignette.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 38
  5280. OncoSimulR::benchmark_3
    Summary results from some benchmarks reported in the vignette.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 38
  5281. OncoSimulR::ex_missing_drivers_b11
    An example where there are intermediate missing drivers.
    rda| rds
    oncosimul
  5282. OncoSimulR::ex_missing_drivers_b12
    An example where there are intermediate missing drivers.
    rda| rds
    oncosimul
  5283. OncoSimulR::examplePosets
    Example posets
    json| rda| rds
    list
  5284. OncoSimulR::examplesFitnessEffects
    Examples of fitness effects
    rda| rds
    list
  5285. OncoSimulR::mcfLs
    mcfLs simulation from the vignette
    rda| rds
    oncosimul
  5286. OncoSimulR::osi
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5287. OncoSimulR::osi_with_ints
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5288. OncoSimulR::s_3_a
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5289. OncoSimulR::s_3_b
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5290. OncoSimulR::simT2
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5291. OncoSimulR::simT3
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5292. OncoSimulR::simul_period_1
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5293. OncoSimulR::smyelo3v57
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5294. OncoSimulR::uvex2
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5295. OncoSimulR::uvex3
    Runs from simulations of interventions examples shown in the vignette. Most, but not all, are from intervention examples.
    rda| rds
    oncosimul
  5296. OncoSimulR::woAntibS
    Runs from simulations of frequency-dependent examples shown in the vignette.
    rda| rds
    oncosimul
  5297. ontoProc::allGOterms
    allGOterms: data.frame with ids and terms
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44541 x 2
  5298. ontoProc::humrna
    humrna: a data.frame of SRA metadata related to RNA-seq in humans
    csv| xlsx| json| ndjson| rda| rds
    data.frame|513 x 12
  5299. ontoProc::minicorpus
    minicorpus: a vector of annotation strings found in 'study title' of SRA metadata.
    json| rda| rds
    character
  5300. ontoProc::packDesc2019
    packDesc2019: overview of ontoProc resources
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13 x 8
  5301. ontoProc::packDesc2021
    packDesc2021: overview of ontoProc resources
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 6
  5302. ontoProc::packDesc2022
    packDesc2022: overview of ontoProc resources
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 7
  5303. ontoProc::packDesc2023
    packDesc2023: overview of ontoProc resources
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15 x 7
  5304. ontoProc::PROSYM
    PROSYM: HGNC symbol synonyms for PR (protein ontology) entries identified in Cell Ontology
    csv| xlsx| json| ndjson| rda| rds
    data.frame|209947 x 2
  5305. ontoProc::stopWords
    stopWords: vector of stop words from xpo6.com
    json| rda| rds
    character
  5306. ontoProc2::cn2tag
    a named vector with mapping from cell type phrase to CURIE for CL.owl
    json| rda| rds
    character
  5307. ontoProc2::ncit_map
    a named vector with values rdfs labels in NCI thesaurus, and names the corresponding formal ontology tags
    json| rda| rds
    character
  5308. ontoProc2::tag2cn
    a named vector with mapping from CURIE to cell type phrase for CL.owl
    json| rda| rds
    character
  5309. openPrimeR::feature.matrix
    Data Sets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|908 x 32
  5310. openPrimeR::primer.data
    Data Sets.
    json| rda| rds
    list
  5311. openPrimeR::primer.data
    Data Sets.
    json| rda| rds
    list
  5312. openPrimeR::primer.df
    Data Sets.
    csv| json| rda| rds
    Primers|8 x 151
  5313. openPrimeR::ref.data
    Data Sets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|940 x 3
  5314. openPrimeR::settings
    Data Sets.
    rda| rds
    DesignSettings
  5315. openPrimeR::settings
    Data Sets.
    rda| rds
    DesignSettings
  5316. openPrimeR::template.data
    Data Sets.
    csv| json| rda| rds
    list
  5317. openPrimeR::template.df
    Data Sets.
    csv| json| rda| rds
    Templates|147 x 35
  5318. openPrimeR::tiller.primer.df
    Data Sets.
    csv| json| rda| rds
    Primers|4 x 151
  5319. openPrimeR::tiller.settings
    Data Sets.
    rda| rds
    DesignSettings
  5320. openPrimeR::tiller.template.df
    Data Sets.
    csv| json| rda| rds
    Templates|147 x 35
  5321. oposSOM::opossom.genesets
    Additional literature genesets
    csv| json| rda| rds
    list
  5322. oposSOM::opossom.tissues
    Example data set.
    csv| json| rda| rds
    matrix|20957 x 12
  5323. oppar::bcm
    Breast cancer metastases from different anatomical sites
    rda| rds
    ExpressionSet
  5324. oppar::eset
    Tomlins et al. Prostate Cancer data (GEO: GSE6099)
    rda| rds
    ExpressionSet
  5325. oppar::maupin
    Maupin's TGFb data and a TGFb gene signature
    json| rda| rds
    list
  5326. optimalFlowData::cytometry.diagnosis
    cytometry.diagnosis
    json| rda| rds
    character
  5327. optimalFlowData::Cytometry1
    Cytometry1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|82810 x 11
  5328. optimalFlowData::Cytometry10
    Cytometry10
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 11
  5329. optimalFlowData::Cytometry11
    Cytometry11
    csv| xlsx| json| ndjson| rda| rds
    data.frame|99999 x 11
  5330. optimalFlowData::Cytometry12
    Cytometry12
    csv| xlsx| json| ndjson| rda| rds
    data.frame|99999 x 11
  5331. optimalFlowData::Cytometry13
    Cytometry13
    csv| xlsx| json| ndjson| rda| rds
    data.frame|99999 x 11
  5332. optimalFlowData::Cytometry14
    Cytometry14
    csv| xlsx| json| ndjson| rda| rds
    data.frame|154882 x 11
  5333. optimalFlowData::Cytometry15
    Cytometry15
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49999 x 11
  5334. optimalFlowData::Cytometry16
    Cytometry16
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49999 x 11
  5335. optimalFlowData::Cytometry17
    Cytometry17
    csv| xlsx| json| ndjson| rda| rds
    data.frame|252425 x 11
  5336. optimalFlowData::Cytometry18
    Cytometry18
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200675 x 11
  5337. optimalFlowData::Cytometry19
    Cytometry19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100599 x 11
  5338. optimalFlowData::Cytometry2
    Cytometry2
    csv| xlsx| json| ndjson| rda| rds
    data.frame|140752 x 11
  5339. optimalFlowData::Cytometry20
    Cytometry20
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200924 x 11
  5340. optimalFlowData::Cytometry21
    Cytometry21
    csv| xlsx| json| ndjson| rda| rds
    data.frame|254450 x 11
  5341. optimalFlowData::Cytometry22
    Cytometry22
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 11
  5342. optimalFlowData::Cytometry23
    Cytometry23
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 11
  5343. optimalFlowData::Cytometry24
    Cytometry24
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 11
  5344. optimalFlowData::Cytometry25
    Cytometry25
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 11
  5345. optimalFlowData::Cytometry26
    Cytometry26
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 11
  5346. optimalFlowData::Cytometry27
    Cytometry27
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300000 x 11
  5347. optimalFlowData::Cytometry28
    Cytometry28
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300000 x 11
  5348. optimalFlowData::Cytometry29
    Cytometry29
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300000 x 11
  5349. optimalFlowData::Cytometry3
    Cytometry3
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49999 x 11
  5350. optimalFlowData::Cytometry30
    Cytometry30
    csv| xlsx| json| ndjson| rda| rds
    data.frame|236886 x 11
  5351. optimalFlowData::Cytometry31
    Cytometry31
    csv| xlsx| json| ndjson| rda| rds
    data.frame|229216 x 11
  5352. optimalFlowData::Cytometry32
    Cytometry32
    csv| xlsx| json| ndjson| rda| rds
    data.frame|260598 x 11
  5353. optimalFlowData::Cytometry33
    Cytometry33
    csv| xlsx| json| ndjson| rda| rds
    data.frame|135798 x 11
  5354. optimalFlowData::Cytometry34
    Cytometry34
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300000 x 11
  5355. optimalFlowData::Cytometry35
    Cytometry35
    csv| xlsx| json| ndjson| rda| rds
    data.frame|213720 x 11
  5356. optimalFlowData::Cytometry36
    Cytometry36
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5357. optimalFlowData::Cytometry37
    Cytometry37
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5358. optimalFlowData::Cytometry38
    Cytometry38
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5359. optimalFlowData::Cytometry39
    Cytometry39
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5360. optimalFlowData::Cytometry4
    Cytometry4
    csv| xlsx| json| ndjson| rda| rds
    data.frame|49999 x 11
  5361. optimalFlowData::Cytometry40
    Cytometry40
    csv| xlsx| json| ndjson| rda| rds
    data.frame|145075 x 11
  5362. optimalFlowData::Cytometry5
    Cytometry5
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5363. optimalFlowData::Cytometry6
    Cytometry6
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5364. optimalFlowData::Cytometry7
    Cytometry7
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5365. optimalFlowData::Cytometry8
    Cytometry8
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50000 x 11
  5366. optimalFlowData::Cytometry9
    Cytometry9
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 11
  5367. optimalFlowData::noise.types
    noise.types
    json| rda| rds
    character
  5368. OrderedList::OL.data
    Gene Expression and Clinical Information of Two Cancer Studies
    rda| rds
    list
  5369. OrderedList::OL.result
    Three Examples of Class 'OrderedList'
    rda| rds
    OrderedList
  5370. orthogene::exp_mouse
    Gene expression data: mouse
    rda| rds
    dgCMatrix
  5371. orthogene::exp_mouse_enst
    Transcript expression data: mouse
    rda| rds
    dgeMatrix
  5372. OSAT::BeadChip96ToMSA4MAP
    Class '"MSAroboticPlate"'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 8
  5373. OSAT::gc
    R data object based on example file.
    rda| rds
    gContainer
  5374. OSAT::GenotypingChip
    Class '"BeadChip"'
    rda| rds
    BeadChip
  5375. OSAT::gs
    R data object based on example file.
    rda| rds
    gSample
  5376. OSAT::gSetup
    R data object based on example file.
    rda| rds
    gExperimentSetup
  5377. OSAT::gSetup2
    R data object based on example file.
    rda| rds
    gExperimentSetup
  5378. OSAT::IlluminaBeadChip
    Class '"BeadChip"'
    rda| rds
    BeadChip
  5379. OSAT::IlluminaBeadChip24Plate
    Class '"BeadPlate"'
    rda| rds
    BeadPlate
  5380. OSAT::IlluminaBeadChip48Plate
    Class '"BeadPlate"'
    rda| rds
    BeadPlate
  5381. OSAT::IlluminaBeadChip96Plate
    Class '"BeadPlate"'
    rda| rds
    BeadPlate
  5382. OSAT::MSA4.plate
    Class '"MSAroboticPlate"'
    rda| rds
    MSAroboticPlate
  5383. OSAT::pheno
    R data object based on example file.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|576 x 4
  5384. Oscope::OscopeExampleData
    Simulated gene level data set with 600 genes and 30 cells.
    csv| json| rda| rds
    matrix|500 x 30
  5385. OVESEG::countBT
    RNAseq count data downsampled from GSE60424
    json| rda| rds
    list
  5386. OVESEG::RocheBT
    mRNA expression data downsampled from GSE28490 (Roche)
    json| rda| rds
    list
  5387. packFinder::arabidopsisThalianaRefseq
    Arabidopsis thaliana Refseq Genome Chromosome 3 Subset
    rda| rds
    DNAStringSet
  5388. packFinder::packMatches
    Sample packFinder Output
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 7
  5389. padma::LUAD_subset
    Subset of batch-corrected multi-omic TCGA data in lung adenocarcinoma
    json| rda| rds
    list
  5390. padma::mirtarbase
    Curated miR-target interaction predictions from miRTarBase
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10754 x 2
  5391. padma::msigdb
    MSigDB canonical pathways and corresponding gene lists
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1322 x 2
  5392. PAIRADISE::sample_dataset
    sample_dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 7
  5393. PAIRADISE::sample_dataset_CEU
    sample_dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 7
  5394. PAIRADISE::sample_dataset_LUSC
    sample_dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 7
  5395. paircompviz::brokentrans
    Artificial dataset that suffers with broken transitivity of the pairwise t-test comparisons
    csv| xlsx| json| ndjson| rda| rds
    data.frame|166 x 2
  5396. pairedGSEA::example_diff_result
    Output of running paired_diff on example_se.
    rda| rds
    DFrame
  5397. pairedGSEA::example_gene_sets
    MSigDB gene sets from humans, category C5 with ensemble gene IDs
    json| rda| rds
    list
  5398. pairedGSEA::example_ora_results
    Output of running paired_ora on example_diff_result and gene sets extracted from MSigDB
    rda| rds
    DFrame
  5399. pairedGSEA::example_se
    A small subset of the GEO:GSE61220 data set.
    rda| rds
    SummarizedExperiment
  5400. pairkat::smokers
    Smokers - PaIRKAT Example Data
    rda| rds
    SummarizedExperiment
  5401. pandaR::pandaResult
    Analysis result from PANDA algorithm on toy data
    rda| rds
    panda
  5402. pandaR::pandaResultPairs
    Analysis result from PANDA algorithm on toy data converted into pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|87000 x 4
  5403. pandaR::pandaToyData
    Toy gene expression, motif, and ppi data
    json| rda| rds
    list
  5404. panelcn.mops::control
    GRanges object of countWindows with read counts for control samples as elementMetadata.
    rda| rds
    GRanges
  5405. panelcn.mops::countWindows
    result object of getWindows - a data.frame with the contents of the provided BED file with an additional gene name and exon name column
    csv| xlsx| json| ndjson| rda| rds
    data.frame|370 x 6
  5406. panelcn.mops::read.width
    read width used for calculating RCs of test and control
    json| rda| rds
    numeric
  5407. panelcn.mops::resultlist
    result object of runPanelcnMops - a list of instances of "CNVDetectionResult"
    rda| rds
    list
  5408. panelcn.mops::test
    GRanges object of countWindows with read counts for a test sample as elementMetadata.
    rda| rds
    GRanges
  5409. PanomiR::gscExample
    Example genesets from MSigDB
    rda| rds
    GeneSetCollection
  5410. PanomiR::miniTestsPanomiR
    Readouts and datasets for minimal reproducible examples of the PanomiR.
    rda| rds
    list
  5411. PanomiR::msigdb_c2
    Canonical pathways from Molecular Signatures Database, MsigDb V6.2
    json| rda| rds
    list
  5412. PanomiR::path_gene_table
    A table of gene-pathway association. based on the pathways of MSigDB.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|60715 x 3
  5413. PanomiR::targetScan_03
    A processed list of miRNA target gene sets from the TargetScan dataset. Each list item is a list of genes targeted by the respective miRNA family
    json| rda| rds
    list
  5414. panp::gcrma.ExpressionSet
    ExpressionSet resulting from gcrma processing of 3 HG-U133A chips
    rda| rds
    ExpressionSet
  5415. panp::NSMPnames.hgu133a
    Negative Strand Matching Probeset (NSMP) names for HG-U133A chip type
    csv| json| rda| rds
    matrix|300 x 1
  5416. panp::NSMPnames.hgu133plus2
    Negative Strand Matching Probeset (NSMP) names for HG-U133 Plus 2.0 chip type
    csv| json| rda| rds
    matrix|985 x 0
  5417. PANR::Bakal2007
    Rich morphological phenotypes for gene overexpression and RNA interference screens
    csv| json| rda| rds
    matrix|273 x 7
  5418. PANR::Bakal2007Cluster
    Rich morphological phenotypes for gene overexpression and RNA interference screens
    json| rda| rds
    integer
  5419. PANR::bm1
    Rich morphological phenotypes for gene overexpression and RNA interference screens
    rda| rds
    BetaMixture
  5420. PANR::nodeColor
    Rich morphological phenotypes for gene overexpression and RNA interference screens
    json| rda| rds
    character
  5421. parody::bushfire
    satellite data on bushfire scars
    csv| json| rda| rds
    matrix|38 x 0
  5422. parody::tcost
    Data on milk transportation costs, from Johnson and Wichern, Applied Multivariate Statistical Analysis, 3rd edition
    csv| json| rda| rds
    matrix|36 x 3
  5423. pasilla::dxd
    A DEXSeqDataSet containing pasilla exon-level counts
    rda| rds
    DEXSeqDataSet
  5424. Path2PPI::human.ai.irefindex
    Data set to predict autophagy induction in _Podospora anserina_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1694 x 54
  5425. Path2PPI::human.ai.proteins
    Data set to predict autophagy induction in _Podospora anserina_
    json| rda| rds
    character
  5426. Path2PPI::pa2human.ai.homologs
    Data set to predict autophagy induction in _Podospora anserina_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|249 x 12
  5427. Path2PPI::pa2yeast.ai.homologs
    Data set to predict autophagy induction in _Podospora anserina_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|94 x 12
  5428. Path2PPI::yeast.ai.irefindex
    Data set to predict autophagy induction in _Podospora anserina_
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3840 x 54
  5429. Path2PPI::yeast.ai.proteins
    Data set to predict autophagy induction in _Podospora anserina_
    json| rda| rds
    character
  5430. pathlinkR::exampleDESeqResults
    List of example results from DESeq2
    rda| rds
    list
  5431. pathlinkR::groupedPathwayColours
    Colour assignments for grouped pathways
    json| rda| rds
    character
  5432. pathlinkR::hallmarkDatabase
    Table of Hallmark gene sets and their genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|7333 x 2
  5433. pathlinkR::innateDbPPI
    InnateDB PPI data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|152256 x 2
  5434. pathlinkR::keggDatabase
    Table of KEGG pathways and genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|32883 x 4
  5435. pathlinkR::mappingFile
    Table of human gene ID mappings
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|45776 x 3
  5436. pathlinkR::pathwayCategories
    Top-level pathway categories
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3499 x 5
  5437. pathlinkR::reactomeDatabase
    Table of all Reactome pathways and genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|129002 x 3
  5438. pathlinkR::sigoraDatabase
    Table of all Sigora pathways and their constituent genes
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|60775 x 4
  5439. pathlinkR::sigoraExamples
    Sigora enrichment example
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|66 x 12
  5440. pathMED::genesetsData
    Preloaded gene sets
    json| rda| rds
    list
  5441. pathMED::pathMEDExampleData
    Example of test gene expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1421 x 40
  5442. pathMED::pathMEDExampleMetadata
    Metadata of test gene expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 2
  5443. pathMED::refData
    Example of reference gene expression datasets
    json| rda| rds
    list
  5444. PathNetData::A
    Adjacency matrix
    csv| json| rda| rds
    matrix|2584 x 0
  5445. PathNetData::brain_regions
    Direct evidence from brain regions dataset
    csv| json| rda| rds
    matrix|20077 x 7
  5446. PathNetData::disease_progression
    Direct evidence from disease progression dataset
    csv| json| rda| rds
    matrix|13065 x 4
  5447. PathNetData::pathway
    Pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37796 x 3
  5448. PathoStat::pstat
    pathostat object generated from example pathoscope report files
    rda| rds
    PathoStat
  5449. PathoStat::pstat
    pathostat object generated from example pathoscope report files
    rda| rds
    PathoStat
  5450. PathoStat::pstat
    pathostat object generated from example pathoscope report files
    rda| rds
    PathoStat
  5451. PathoStat::pstat
    pathostat object generated from example pathoscope report files
    rda| rds
    PathoStat
  5452. pathview::bods
    Mapping data on KEGG species code and corresponding Bioconductor gene annotation package
    csv| json| rda| rds
    matrix|19 x 4
  5453. pathview::cpd.accs
    Mapping data between compound or gene IDs and KEGG accessions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30054 x 4
  5454. pathview::cpd.names
    Mapping data between compound or gene IDs and KEGG accessions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12314 x 5
  5455. pathview::cpd.simtypes
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    character
  5456. pathview::demo.paths
    Data for demo purpose
    csv| json| rda| rds
    list
  5457. pathview::gene.idtype.bods
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    list
  5458. pathview::gene.idtype.list
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    character
  5459. pathview::gse16873.d
    Data for demo purpose
    csv| json| rda| rds
    matrix|11979 x 6
  5460. pathview::kegg.met
    Mapping data between compound or gene IDs and KEGG accessions
    csv| json| rda| rds
    matrix|694 x 3
  5461. pathview::KEGGEdgeSubtype
    Internal functions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 11
  5462. pathview::ko.ids
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    character
  5463. pathview::korg
    Mapping data on KEGG species code and corresponding Bioconductor gene annotation package
    csv| json| rda| rds
    matrix|10718 x 10
  5464. pathview::paths.hsa
    Data for demo purpose
    json| rda| rds
    character
  5465. pathview::rn.list
    Mapping data between compound or gene IDs and KEGG accessions
    json| rda| rds
    list
  5466. pathwayPCA::colon_pathwayCollection
    Gene Pathway Subset
    csv| json| rda| rds
    pathwayCollection
  5467. pathwayPCA::colonSurv_df
    Colon Cancer -Omics Data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|250 x 0
  5468. pathwayPCA::wikipwsHS_Entrez_pathwayCollection
    Wikipathways Homosapiens EntrezIDs
    csv| json| rda| rds
    pathwayCollection
  5469. pathwayPCA::wikipwsHS_Symbol_pathwayCollection
    Wikipathways Homosapiens Gene Symbols
    csv| json| rda| rds
    pathwayCollection
  5470. pcaMethods::helix
    A helix structured toy data set
    csv| json| rda| rds
    matrix|1000 x 3
  5471. pcaMethods::metaboliteData
    A incomplete metabolite data set from an Arabidopsis coldstress experiment
    csv| json| rda| rds
    matrix|154 x 52
  5472. pcaMethods::metaboliteDataComplete
    A complete metabolite data set from an Arabidopsis coldstress experiment
    csv| json| rda| rds
    matrix|154 x 52
  5473. PCAN::geneByHp
    Entrez gene IDs associated to HP terms (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|67989 x 2
  5474. PCAN::geneByTrait
    Gene associated to trait (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4569 x 3
  5475. PCAN::geneDef
    Description of genes (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3265 x 3
  5476. PCAN::hp_ancestors
    HP ancestors (Example data)
    json| rda| rds
    list
  5477. PCAN::hp_class
    HP class (Example data)
    json| rda| rds
    list
  5478. PCAN::hp_descendants
    HP descendants (Example data)
    json| rda| rds
    list
  5479. PCAN::hpByTrait
    HP IDs associated to trait (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55311 x 3
  5480. PCAN::hpDef
    Description of HP terms (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10962 x 2
  5481. PCAN::hqStrNw
    STRIND database network of Homo sapiens genes (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|643683 x 3
  5482. PCAN::hsEntrezByRPath
    Homo sapiens entrez gene ID by Reactome pathway (Example data)
    json| rda| rds
    list
  5483. PCAN::rPath
    Reactome pathways (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1345 x 2
  5484. PCAN::traitDef
    Description of Traits (Example data)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3675 x 3
  5485. PCHiCdata::sGM12878
    Promoter Capture data for chromosomes 20 and 21 in GM12878
    rda| rds
    chicagoData
  5486. PCHiCdata::smESC
    Promoter Capture data for chromosomes 18 and 19 in smESC
    rda| rds
    chicagoData
  5487. pd.atdschip.tiling::bgSequence
    Sequence data for PM probes.
    rda| rds
    DFrame
  5488. pd.atdschip.tiling::pmSequence
    Sequence data for PM probes.
    rda| rds
    DFrame
  5489. PDATK::birnbaum
    Published classifier gene signature for Birnbaum
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 3
  5490. PDATK::chen
    Published classifier gene signature for Chen
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15 x 3
  5491. PDATK::cohortSubtypeDFs
    A list of sample subtypes for the data in sampleCohortList
    csv| json| rda| rds
    list
  5492. PDATK::CSPC_MAE
    A 'MultiAssayExperiment' containing cohorts of pancreatic cancer patients, for use in package examples.
    rda| rds
    MultiAssayExperiment
  5493. PDATK::haiderSigScores
    Classifier survival scores for Haider
    json| rda| rds
    list
  5494. PDATK::sampleClinicalModel
    Sample ClinicalModel Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    rda| rds
    ClinicalModel
  5495. PDATK::sampleCohortList
    A Set of Example Patient Cohorts
    rda| rds
    CohortList
  5496. PDATK::sampleICGCmicro
    A Sample SurvivalExperiment Containing Data from the ICGC micro-array cohort from 'MetaGxPancreas'
    rda| rds
    SurvivalExperiment
  5497. PDATK::samplePCOSPmodel
    A Sample PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    rda| rds
    PCOSP
  5498. PDATK::samplePCOSPpredList
    Sample CohortList with PCOSP Risk Predictions
    rda| rds
    CohortList
  5499. PDATK::samplePCSIsurvExp
    Sample SurvivalExperiment Containing the PCSI rna-sequencing cohort from 'MetaGxPancreas'.
    rda| rds
    SurvivalExperiment
  5500. PDATK::sampleRGAmodel
    Sample RGA Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    rda| rds
    RGAModel
  5501. PDATK::sampleRLSmodel
    Sample RLS Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    rda| rds
    RLSModel
  5502. PDATK::sampleTrainedPCOSPmodel
    A Sample Trained PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    rda| rds
    PCOSP
  5503. PDATK::sampleValPCOSPmodel
    Sample Validated PCOSP Model for Plotting Examples
    rda| rds
    PCOSP
  5504. peakCombiner::syn_blacklist
    Synthetic file with blacklisted regions for peakCombiner
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|2 x 3
  5505. peakCombiner::syn_control_rep1_narrowPeak
    Synthetic data set for control rep 1 sample in narrowPeak file format
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|11 x 10
  5506. peakCombiner::syn_data_bed
    Synthetic data set of genomic coordinates and meta data columns
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|55 x 4
  5507. peakCombiner::syn_data_control01
    Synthetic data set of genomic coordinates and meta data columns filtered for control rep 1 sample
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|11 x 6
  5508. peakCombiner::syn_data_granges
    Synthetic data set of genomic coordinates and meta data columns
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55 x 8
  5509. peakCombiner::syn_data_tibble
    Synthetic data set of genomic coordinates and meta data columns as tibble
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|55 x 8
  5510. peakCombiner::syn_data_treatment01
    Synthetic data set of genomic coordinates and meta data columns filtered for treatment rep 1 sample
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|10 x 6
  5511. peakCombiner::syn_sample_sheet
    Synthetic sample sheet to load example data with peakCombiner
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|6 x 4
  5512. peakCombiner::syn_treatment_rep1_narrowPeak
    Synthetic data set for treatment rep 1 sample in narrowPeak file format
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|10 x 10
  5513. peco::cellcyclegenes_whitfield2002
    list of cell cycle genes identified in Whitfield et al. 2002.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|622 x 3
  5514. peco::model_5genes_predict
    A SingleCellExperiment object
    rda| rds
    SingleCellExperiment
  5515. peco::model_5genes_train
    Traing model results among samples from 5 individuals.
    json| rda| rds
    list
  5516. peco::sce_top101genes
    Molecule counts of the 101 significant cyclical genes in the 888 samples analyzed in the study.
    rda| rds
    SingleCellExperiment
  5517. peco::training_human
    Training data from 888 single-cell samples and 101 top cyclic genes
    json| rda| rds
    list
  5518. Pedixplorer::minnbreast
    Minnesota Breast Cancer Study
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28081 x 15
  5519. Pedixplorer::relped
    Relped data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 4
  5520. Pedixplorer::sampleped
    Sampleped data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55 x 19
  5521. pepDat::pep_hxb2
    Reference peptide dataset for HIV enveloppe
    rda| rds
    GRanges
  5522. pepDat::pep_hxb2JPT
    Peptide collection for HXB2 and JPT clades
    rda| rds
    GRanges
  5523. pepDat::pep_m239smE543
    Peptide collection for SIV enveloppe
    rda| rds
    GRanges
  5524. pepDat::pep_mac239
    Reference peptide dataset for SIV enveloppe
    rda| rds
    GRanges
  5525. pepDat::restab
    Summary tables from pepStat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1964 x 9
  5526. pepDat::restab_aggregate
    Summary tables from pepStat
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1423 x 9
  5527. PepsNMRData::Data_HS_sp
    FIDs and spectra from the Human Serum database.
    json| rda| rds
    list
  5528. PepsNMRData::Data_HU_sp
    FIDs and spectra from the Human Urine database.
    json| rda| rds
    list
  5529. PepsNMRData::FidData_HS
    Raw FIDs for the Human Serum database.
    csv| json| rda| rds
    matrix|32 x 0
  5530. PepsNMRData::FidData_HU
    Raw FIDs for the Human Urine database.
    csv| json| rda| rds
    matrix|24 x 0
  5531. PepsNMRData::FidInfo_HS
    Information about the FIDs for the Human Serum database.
    csv| json| rda| rds
    matrix|32 x 9
  5532. PepsNMRData::FidInfo_HS_sp
    Information about the 4 first Human Serum FIDs.
    csv| json| rda| rds
    matrix|4 x 9
  5533. PepsNMRData::FidInfo_HU
    Information about the FIDs for the Human Urine database.
    csv| json| rda| rds
    matrix|24 x 10
  5534. PepsNMRData::FidInfo_HU_sp
    Information about the 4 first Human Urine FIDs.
    csv| json| rda| rds
    matrix|4 x 10
  5535. PepsNMRData::FinalSpectra_HS
    Spectra for the Human Serum database after the advised preprocessing workflow.
    csv| json| rda| rds
    matrix|32 x 0
  5536. PepsNMRData::FinalSpectra_HU
    Spectra for the Human Urine database after the advised preprocessing workflow.
    csv| json| rda| rds
    matrix|24 x 0
  5537. PepsNMRData::Group_HS
    Class of Human Serum spectra.
    json| rda| rds
    character
  5538. PepsNMRData::Group_HU
    Class of Human Urine spectra.
    json| rda| rds
    character
  5539. pepVet::aa_properties
    Amino acid properties
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|22 x 6
  5540. periodicDNA::ce11_all_REs
    ce11_all_REs
    rda| rds
    GRanges
  5541. periodicDNA::ce11_ATACseq
    ce11_ATACseq
    rda| rds
    SimpleRleList
  5542. periodicDNA::ce11_proms
    ce11_proms
    rda| rds
    GRanges
  5543. periodicDNA::ce11_proms_seqs
    ce11_proms_seqs
    rda| rds
    DNAStringSet
  5544. periodicDNA::ce11_TSSs
    ce11_TSSs
    rda| rds
    list
  5545. periodicDNA::ce11_WW_10bp
    ce11_WW_10bp
    rda| rds
    SimpleRleList
  5546. pgca::BET1947_v339
    Data Files From BiT Heart Cohort
    csv| xlsx| json| ndjson| rda| rds
    data.frame|574 x 4
  5547. pgca::BET2007_v339
    Data Files From BiT Heart Cohort
    csv| xlsx| json| ndjson| rda| rds
    data.frame|526 x 4
  5548. pgca::BET2047_v339
    Data Files From BiT Heart Cohort
    csv| xlsx| json| ndjson| rda| rds
    data.frame|642 x 4
  5549. pgca::BET2067_v339
    Data Files From BiT Heart Cohort
    csv| xlsx| json| ndjson| rda| rds
    data.frame|602 x 4
  5550. pgxRpi::hg19_cytoband
    A dataframe containing cytoband annotation details extracted from the hg19 gennome. It is used for CNV frequency visualization.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  5551. pgxRpi::hg38_cytoband
    A dataframe containing cytoband annotation details extracted from the hg38 gennome. It is used for CNV frequency visualization.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  5552. phantasus::es
    Example dataset
    rda| rds
    ExpressionSet
  5553. phantasus::fgseaExample
    Example pathway data.frame for fgsea tool
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43 x 3
  5554. PharmacoGx::CCLEsmall
    Cancer Cell Line Encyclopedia (CCLE) Example PharmacoSet
    rda| rds
    PharmacoSet
  5555. PharmacoGx::CMAPsmall
    Connectivity Map Example PharmacoSet
    rda| rds
    PharmacoSet
  5556. PharmacoGx::GDSCsmall
    Genomics of Drug Sensitivity in Cancer Example PharmacoSet
    rda| rds
    PharmacoSet
  5557. PharmacoGx::HDAC_genes
    HDAC Gene Signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14 x 2
  5558. phenoTest::epheno
    epheno object.
    rda| rds
    epheno
  5559. phenoTest::eset
    Example data.
    rda| rds
    ExpressionSet
  5560. phenoTest::eset.genelevel
    Example data.
    rda| rds
    ExpressionSet
  5561. phosphonormalizer::enriched.rd
    Enriched dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4099 x 17
  5562. phosphonormalizer::non.enriched.rd
    Non-enriched dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16982 x 17
  5563. PhosR::hSEGs
    A list of Stably Expressed Genes (SEGs)
    json| rda| rds
    character
  5564. PhosR::KinaseFamily
    KinaseFamily
    csv| json| rda| rds
    matrix|425 x 6
  5565. PhosR::motif.human.list
    List of human kinase motifs
    json| rda| rds
    list
  5566. PhosR::motif.mouse.list
    List of mouse kinase motifs
    json| rda| rds
    list
  5567. PhosR::motif.rat.list
    List of rat kinase motifs
    json| rda| rds
    list
  5568. PhosR::mSEGs
    A list of Stably Expressed Genes (SEGs)
    json| rda| rds
    character
  5569. PhosR::phospho.cells.Ins
    phospho.cells.Ins
    csv| json| rda| rds
    matrix|5000 x 24
  5570. PhosR::phospho.cells.Ins.pe
    phospho.cells.Ins
    rda| rds
    PhosphoExperiment
  5571. PhosR::phospho.L6.ratio
    phospho.L6.ratio
    csv| json| rda| rds
    matrix|6660 x 12
  5572. PhosR::phospho.L6.ratio.pe
    phospho_L6_ratio_pe
    rda| rds
    PhosphoExperiment
  5573. PhosR::phospho.liver.Ins.TC.ratio.RUV
    phospho_liverInsTC_RUV_sample
    csv| json| rda| rds
    matrix|800 x 90
  5574. PhosR::phospho.liver.Ins.TC.ratio.RUV.pe
    phospho.liver.Ins.TC.ratio.RUV.pe
    rda| rds
    PhosphoExperiment
  5575. PhosR::PhosphoSite.human
    PhosphoSitePlus annotations for human
    json| rda| rds
    list
  5576. PhosR::PhosphoSite.mouse
    PhosphoSitePlus annotations for mouse
    json| rda| rds
    list
  5577. PhosR::PhosphoSite.rat
    PhosphoSitePlus annotations for rat
    json| rda| rds
    list
  5578. PhosR::SPSs
    A list of Stably Phosphorylated Sites (SPSs)
    json| rda| rds
    character
  5579. PhyloProfile::filteredProfile
    An example of a filtered phylogenetic profile
    csv| xlsx| json| ndjson| rda| rds
    data.frame|168 x 21
  5580. PhyloProfile::finalProcessedProfile
    An example of a final processed & filtered phylogenetic profile
    csv| xlsx| json| ndjson| rda| rds
    data.frame|88 x 12
  5581. PhyloProfile::fullProcessedProfile
    An example of a fully processed phylogenetic profile
    csv| xlsx| json| ndjson| rda| rds
    data.frame|168 x 15
  5582. PhyloProfile::idList
    NCBI ID list for experimental data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|95 x 41
  5583. PhyloProfile::mainLongRaw
    An example of a raw long input file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|168 x 5
  5584. PhyloProfile::ppTaxonomyMatrix
    An example of a taxonomy matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 162
  5585. PhyloProfile::ppTree
    An example of a taxonomy tree in newick format
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 1
  5586. PhyloProfile::profileWithTaxonomy
    An example of a raw long input file together with the taxonomy info
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 13
  5587. PhyloProfile::rankList
    NCBI rank list for experimental data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|95 x 41
  5588. PhyloProfile::taxonNamesReduced
    NCBI Taxonomy reduced data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|757 x 4
  5589. PhyloProfile::taxonomyMatrix
    Taxonomy matrix for experimental data sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|95 x 149
  5590. phyloseq::enterotype
    (Data) Enterotypes of the human gut microbiome (2011)
    rda| rds
    phyloseq
  5591. phyloseq::esophagus
    (Data) Small example dataset from a human esophageal community (2004)
    rda| rds
    phyloseq
  5592. phyloseq::GlobalPatterns
    (Data) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample (2011)
    rda| rds
    phyloseq
  5593. phyloseq::soilrep
    (Data) Reproducibility of soil microbiome data (2011)
    rda| rds
    phyloseq
  5594. piano::gsa_input
    Random input data for gene set analysis
    json| rda| rds
    list
  5595. piano::gsa_results
    Gene set analysis result data
    rda| rds
    list
  5596. Pigengene::aml
    AML gene expression profile
    csv| json| rda| rds
    matrix|202 x 1000
  5597. Pigengene::eigengenes33
    Eigengenes of 33 modules
    json| rda| rds
    list
  5598. Pigengene::mds
    MDS gene expression profile
    csv| json| rda| rds
    matrix|164 x 1000
  5599. Pigengene::pigengene
    An object of class 'Pigengene'
    rda| rds
    pigengene
  5600. pipeComp::clustMetricsCorr
    Correlations across clustering evaluation metrics
    csv| json| rda| rds
    list
  5601. pipeComp::ctrlgenes
    Lists of control genes
    json| rda| rds
    list
  5602. pipeComp::exampleDEAresults
    Example results from the DEA pipeline
    rda| rds
    SimpleList
  5603. pipeComp::exampleResults
    Example pipeline results
    rda| rds
    SimpleList
  5604. pipeComp::stableG
    Lists of stable genes
    json| rda| rds
    list
  5605. Pirat::ropers
    Ropers dataset
    json| rda| rds
    list
  5606. Pirat::subbouyssie
    Sub-Bouyssie dataset
    json| rda| rds
    list
  5607. Pirat::subropers
    Sub-Ropers dataset
    json| rda| rds
    list
  5608. PIUMA::df_test_proj
    A dataset to test the 'dfToProjection' and 'dfToDistance' funtions of 'PIUMA' package.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 2
  5609. PIUMA::tda_test_data
    A TDAobj to test the 'PIUMA' package.
    rda| rds
    TDAobj
  5610. PIUMA::vascEC_meta
    Example datasets for PIUMA package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1180 x 2
  5611. PIUMA::vascEC_norm
    We tested PIUMA on a subset of the single-cell RNA Sequencing dataset (GSE:GSE193346 generated and published by Feng et al. (2022) on Nature Communication to demonstrate that distinct transcriptional profiles are present in specific cell types of each heart chambers, which were attributed to have roles in cardiac development. In this tutorial, our aim will be to exploit PIUMA for identifying sub-population of vascular endothelial cells, which can be associated with specific heart developmental stages. The original dataset consisted of three layers of heterogeneity: cell type, stage and zone (i.e., heart chamber). Our testing dataset was obtained by subsetting vascular endothelial cells (cell type) by Seurat object, extracting raw counts and metadata. Thus, we filtered low expressed genes and normalized data by DaMiRseq
    csv| json| rda| rds
    matrix|1180 x 0
  5612. planet::ageCpGs
    Placental gestational age CpGs
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|1126 x 5
  5613. planet::ethnicityCpGs
    CpGs to predict ethnicity
    json| rda| rds
    character
  5614. planet::plBetas
    Example placental DNA methylation data
    csv| json| rda| rds
    matrix|13918 x 24
  5615. planet::plCellCpGsFirst
    First trimester placental cell type coefficients
    csv| json| rda| rds
    matrix|600 x 6
  5616. planet::plCellCpGsThird
    Third trimester placental cell type coefficients
    csv| json| rda| rds
    matrix|600 x 6
  5617. planet::plColors
    A color palette for placental cell types
    json| rda| rds
    character
  5618. planet::plPhenoData
    Sample information accompanying 'pl_betas'
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|24 x 7
  5619. planttfhunter::gsu
    Protein sequences of the algae species Galdieria sulphuraria
    rda| rds
    AAStringSet
  5620. planttfhunter::gsu_annotation
    Domain annotation for the algae species Galdieria sulphuraria The data set was created using the function 'annotate_domains()'.
    csv| json| rda| rds
    list
  5621. planttfhunter::planttfclass_scheme
    Correspondence table between TAPscan and Plant-TFClass
    csv| xlsx| json| ndjson| rda| rds
    data.frame|73 x 6
  5622. planttfhunter::planttfdb_scheme
    Data frame of PlantTFDB's TF family classification scheme
    csv| xlsx| json| ndjson| rda| rds
    data.frame|58 x 5
  5623. planttfhunter::tap_class
    Classes of transcription-associated proteins (TAPs) in TAPscan
    csv| xlsx| json| ndjson| rda| rds
    data.frame|137 x 4
  5624. planttfhunter::tapscan_scheme
    Data frame of TAPscan's classification scheme
    csv| xlsx| json| ndjson| rda| rds
    data.frame|143 x 6
  5625. plasmut::crcseq
    This data is an example dataset to show how to use the package
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|8 x 7
  5626. plgem::LPSeset
    ExpressionSet for Testing PLGEM
    rda| rds
    ExpressionSet
  5627. PlinkMatrix::example_GRanges
    sample GRanges coordinated with example_PlinkMatrix
    rda| rds
    GRanges
  5628. PlinkMatrix::g445samples
    sample characteristics of 445 GEUVADIS samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|445 x 5
  5629. plotgardenerData::COVID_NY_FL_tracking
    plotgardener example data for tracked COVID-19 cases in New York and Florida
    csv| xlsx| json| ndjson| rda| rds
    data.frame|775 x 3
  5630. plotgardenerData::COVID_NY_FL_vaccines
    plotgardener example data for COVID-19 vaccinations in New York and Florida
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 4
  5631. plotgardenerData::COVID_USA_cases
    plotgardener example map data for COVID-19 cases in the United States
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15537 x 7
  5632. plotgardenerData::GM12878_ChIP_CTCF_signal
    plotgardener example GM12878 CTCF ChIP signal data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26751 x 4
  5633. plotgardenerData::GM12878_ChIP_H3K27ac_signal
    plotgardener example GM12878 H3K27ac ChIP signal data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12939 x 4
  5634. plotgardenerData::GM12878_HiC_10kb
    plotgardener example GM12878 Hi-C data at 10 Kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26785 x 3
  5635. plotgardenerData::hg19_insulin_GWAS
    plotgardener example insulin GWAS data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22000 x 5
  5636. plotgardenerData::IMR90_ChIP_CTCF_reads
    plotgardener example CTCF read data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15092 x 4
  5637. plotgardenerData::IMR90_ChIP_CTCF_signal
    plotgardener example IMR90 CTCF ChIP signal data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|119512 x 4
  5638. plotgardenerData::IMR90_ChIP_H3K27ac_signal
    plotgardener example IMR90 H3K27ac ChIP signal data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|113172 x 4
  5639. plotgardenerData::IMR90_DNAloops_pairs
    plotgardener example DNA loop pair data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 6
  5640. plotgardenerData::IMR90_HiC_10kb
    plotgardener example IMR90 Hi-C data at 10 Kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26407 x 3
  5641. PLPE::plateletSet
    LCMS proteomic data for platelte MPs
    rda| rds
    ExpressionSet
  5642. PLSDAbatch::AD_data
    Anaerobic digestion study
    rda| rds
    list
  5643. PLSDAbatch::sponge_data
    Sponge _A. aerophoba_ study
    rda| rds
    TreeSummarizedExperiment
  5644. plyinteractions::ce10_ARCC
    Data files provided in the plyinteractions package
    rda| rds
    GInteractions
  5645. plyinteractions::ce10_REs
    Data files provided in the plyinteractions package
    rda| rds
    GRanges
  5646. plyinteractions::GM12878_HiCCUPS
    Data files provided in the plyinteractions package
    rda| rds
    GInteractions
  5647. plyxp::se_simple
    Plyxp Simple Example Summarized Experiment
    rda| rds
    PlySummarizedExperiment
  5648. pmm::kinome
    Example Data from InfectX
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79296 x 8
  5649. pmp::MTBLS79
    Direct-infusion mass spectrometry (DIMS) data set
    rda| rds
    SummarizedExperiment
  5650. PoDCall::thrTable
    PoDCall Example Threshold Table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 15
  5651. podkat::b36Unmasked
    Unmasked Regions of Human Genomes
    rda| rds
    CompressedGRangesList
  5652. podkat::b37Unmasked
    Unmasked Regions of Human Genomes
    rda| rds
    CompressedGRangesList
  5653. podkat::hg18Unmasked
    Unmasked Regions of Human Genomes
    rda| rds
    CompressedGRangesList
  5654. podkat::hg19Unmasked
    Unmasked Regions of Human Genomes
    rda| rds
    CompressedGRangesList
  5655. podkat::hg38Unmasked
    Unmasked Regions of Human Genomes
    rda| rds
    CompressedGRangesList
  5656. podkat::hgA
    Artificial Human Chromosome for Testing Purposes
    rda| rds
    GRanges
  5657. poem::metric_info
    Metrics Information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|65 x 4
  5658. poem::noisy_moon
    The noisy moon dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 5
  5659. poem::sp_toys
    Toy examples of spatial data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|240 x 11
  5660. poem::toyExamples
    Toy embedding examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|880 x 4
  5661. pogos::CCLE_drts
    compounds_v1: serialization of compounds info from PharmacoDb v1
    rda| rds
    DRTraceSet
  5662. pogos::cell_lines_v1
    compounds_v1: serialization of compounds info from PharmacoDb v1
    rda| rds
    DFrame
  5663. pogos::compounds_v1
    compounds_v1: serialization of compounds info from PharmacoDb v1
    rda| rds
    DFrame
  5664. pogos::datasets_v1
    compounds_v1: serialization of compounds info from PharmacoDb v1
    rda| rds
    DFrame
  5665. pogos::tissues_v1
    compounds_v1: serialization of compounds info from PharmacoDb v1
    rda| rds
    DFrame
  5666. PolySTest::liver_example
    Example data set liver_example for PolySTest
    rda| rds
    SummarizedExperiment
  5667. Polytect::BPV
    BPV data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25461 x 3
  5668. Polytect::CA
    CA data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23863 x 2
  5669. Polytect::CNV5plex
    CNV 5-plex data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24827 x 5
  5670. Polytect::CNV6plex
    CNV 6-plex data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24483 x 6
  5671. Polytect::HIV
    HIV data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16946 x 4
  5672. Polytect::HR
    HR data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18233 x 2
  5673. Polytect::LR
    LR data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22723 x 2
  5674. Polytect::MM
    MM data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14203 x 2
  5675. POMA::st000284
    Colorectal Cancer Detection Using Targeted Serum Metabolic Profiling
    rda| rds
    SummarizedExperiment
  5676. POMA::st000336
    Targeted LC/MS of urine from boys with DMD and controls
    rda| rds
    SummarizedExperiment
  5677. postNet::humanSignatures
    Human gene signatures of translational control
    json| rda| rds
    list
  5678. postNet::mouseSignatures
    Mouse gene signatures of translational control
    json| rda| rds
    list
  5679. postNet::postNetExample
    An example dataset for demonstrating the usage of postNet functions
    rda| rds
    list
  5680. postNet::postNetVignette
    An example dataset for demonstrating the workflow of a postNet ananlysis
    json| rda| rds
    list
  5681. powerTCR::repertoires
    Two toy examples of sample TCR repertoires.
    json| rda| rds
    list
  5682. POWSC::es_mef_sce
    sample data for POWSC
    rda| rds
    SingleCellExperiment
  5683. POWSC::sce
    sample data for GSE67835
    rda| rds
    SingleCellExperiment
  5684. ppcseq::counts
    counts
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|394821 x 9
  5685. preciseTAD::arrowhead_gm12878_5kb
    Domain data from ARROWHEAD TAD-caller for GM12878 at 5 kb
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8409 x 3
  5686. preciseTAD::tfbsList
    A list of the chromosomal coordinates for 26 transcription factor binding sites from the Gm12878 cell line
    rda| rds
    CompressedGRangesList
  5687. PREDAsampledata::AffybatchRCC
    AffyBatch object for clear cell renal carcinoma (RCC) sample dataset
    rda| rds
    AffyBatch
  5688. PREDAsampledata::ExpressionSetRCC
    ExpressionSet object for clear cell renal carcinoma (RCC) sample dataset
    rda| rds
    ExpressionSet
  5689. PREDAsampledata::GEanalysisResults
    RCC gene expression sample dataset - PREDA analysis results
    rda| rds
    PREDADataAndResults
  5690. PREDAsampledata::SODEGIRCNanalysisResults
    SODEGIR analysis results on Copy Number data
    rda| rds
    PREDAResults
  5691. PREDAsampledata::SODEGIRCNDataForPREDA
    Copy Number input data for PREDA analysis
    rda| rds
    DataForPREDA
  5692. PREDAsampledata::SODEGIRGEanalysisResults
    SODEGIR analysis results on Gene Expression data
    rda| rds
    PREDADataAndResults
  5693. PREDAsampledata::SODEGIRGEDataForPREDA
    Gene Expression input data for PREDA analysis
    rda| rds
    DataForPREDA
  5694. PrInCE::gold_standard
    Reference set of human protein complexes
    json| rda| rds
    list
  5695. PrInCE::kristensen
    Interactome of HeLa cells
    csv| json| rda| rds
    matrix|1875 x 48
  5696. PrInCE::kristensen_gaussians
    Fitted Gaussian mixture models for the 'kristensen' dataset
    json| rda| rds
    list
  5697. PrInCE::scott
    Cytoplasmic interactome of Jurkat T cells during apoptosis
    csv| json| rda| rds
    matrix|1560 x 55
  5698. PrInCE::scott_gaussians
    Fitted Gaussian mixture models for the 'scott' dataset
    json| rda| rds
    list
  5699. proActiv::promoterAnnotation.gencode.v34.subset
    Promoter annotation for Gencode.v34 (subset)
    rda| rds
    PromoterAnnotation
  5700. proBatch::example_ecoli_data
    Example multi-center DIA LFQ E. coli proteomics (DIA-NN)
    json| rda| rds
    list
  5701. proBatch::example_peptide_annotation
    Peptide annotation data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|366 x 3
  5702. proBatch::example_proteome
    Example protein data in long format
    csv| xlsx| json| ndjson| rda| rds
    data.frame|85278 x 5
  5703. proBatch::example_proteome_matrix
    Example protein data in matrix
    csv| json| rda| rds
    matrix|366 x 0
  5704. proBatch::example_sample_annotation
    Sample annotation data version 1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|233 x 11
  5705. procoil::PrOCoilModel
    Class "CCModel"
    rda| rds
    CCModel
  5706. procoil::PrOCoilModelBA
    Class "CCModel"
    rda| rds
    CCModel
  5707. ProData::f45cbmk
    A SELDI-TOF data of 167 breast cancer and normal samples from the Miron Laboratory
    rda| rds
    ExpressionSet
  5708. profileplyr::chipExampleBig
    Example ChIPprofile object
    rda| rds
    ChIPprofile
  5709. profileplyr::gene_list_character
    Character vector of the top differentially expressed genes from hindbrain versus liver as measured by RNA-seq
    json| rda| rds
    list
  5710. profileplyr::gene_list_dataframe
    Dataframe of top differentially expressed genes from hindbrain versus liver as measured by RNA-seq
    csv| json| rda| rds
    list
  5711. profileplyr::ik_Profiles
    Example ChIPprofile object (Ikaros profiles)
    rda| rds
    ChIPprofile
  5712. profileplyr::K27ac_GRlist_hind_liver_top5000
    GRangesList of the top 5000 H3K27ac peaks from hindbrain and liver downloaded from ENCODE
    rda| rds
    CompressedGRangesList
  5713. profileScoreDist::INR
    The position count matrix for INR.
    csv| json| rda| rds
    matrix|4 x 0
  5714. progeny::model_human_full
    The full human linear model underlying PROGENy
    csv| xlsx| json| ndjson| rda| rds
    data.frame|274143 x 4
  5715. progeny::model_mouse_full
    The full mouse linear model underlying PROGENy
    csv| xlsx| json| ndjson| rda| rds
    data.frame|219067 x 4
  5716. progeny::vignette_data
    The RNA data used in the progeny vignette
    json| rda| rds
    list
  5717. projectR::AP.RNAseq6l3c3t
    CoGAPS patterns and genes weights for p.RNAseq6l3c3t
    json| rda| rds
    list
  5718. projectR::cr_microglial
    CogapsResult object for microglial_counts
    rda| rds
    CogapsResult
  5719. projectR::CR.RNAseq6l3c3t
    CogapsResult object for p.RNAseq6l3c3t
    rda| rds
    CogapsResult
  5720. projectR::glial_counts
    log-normalized count data from astrocytes and oligodendrocytes in the p6 mouse cortex.
    rda| rds
    dgTMatrix
  5721. projectR::map.ESepiGen4c1l
    RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|93 x 9
  5722. projectR::map.RNAseq6l3c3t
    RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
    csv| xlsx| json| ndjson| rda| rds
    data.frame|108 x 6
  5723. projectR::microglial_counts
    log-normalized count data from microglial cells in the p6 mouse cortex.
    rda| rds
    dgTMatrix
  5724. projectR::multivariateAnalysisR_seurat_test
    Truncated Seurat Object with latent space projection done to unspecified cells in different stages for multivariateAnalysisR analysis
    rda| rds
    Seurat
  5725. projectR::p.ESepiGen4c1l
    RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
    json| rda| rds
    list
  5726. projectR::p.RNAseq6l3c3t
    RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
    csv| xlsx| json| ndjson| rda| rds
    data.frame|108 x 54
  5727. projectR::pd.ESepiGen4c1l
    RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 2
  5728. projectR::pd.RNAseq6l3c3t
    RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
    csv| xlsx| json| ndjson| rda| rds
    data.frame|54 x 38
  5729. projectR::retinal_patterns
    CoGAPS patterns learned from the developing mouse retina.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3290 x 80
  5730. pRoloc::andy2011params
    rda| rds
    AnnotationParams
  5731. pRoloc::dunkley2006params
    rda| rds
    AnnotationParams
  5732. pRolocdata::andreyev2010
    Six sub-cellular fraction data from mouse macrophage-like RAW264.7 cells from Andreyev et al. (2009)
    rda| rds
    MSnSet
  5733. pRolocdata::andreyev2010activ
    Six sub-cellular fraction data from mouse macrophage-like RAW264.7 cells from Andreyev et al. (2009)
    rda| rds
    MSnSet
  5734. pRolocdata::andreyev2010rest
    Six sub-cellular fraction data from mouse macrophage-like RAW264.7 cells from Andreyev et al. (2009)
    rda| rds
    MSnSet
  5735. pRolocdata::andy2011
    LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al. (2013)
    rda| rds
    MSnSet
  5736. pRolocdata::andy2011goCC
    LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al. (2013)
    rda| rds
    MSnSet
  5737. pRolocdata::andy2011hpa
    LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al. (2013)
    rda| rds
    MSnSet
  5738. pRolocdata::at_chloro
    The AT_CHLORO data base
    rda| rds
    MSnSet
  5739. pRolocdata::baers2018
    Synechocystis spatial proteomics
    rda| rds
    MSnSet
  5740. pRolocdata::Barylyuk2020ToxoLopit
    Whole-cell spatial proteome of Toxoplasma: molecular anatomy of an apicomplexan cell
    rda| rds
    MSnSet
  5741. pRolocdata::beltran2016HCMV120
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5742. pRolocdata::beltran2016HCMV24
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5743. pRolocdata::beltran2016HCMV48
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5744. pRolocdata::beltran2016HCMV72
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5745. pRolocdata::beltran2016HCMV96
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5746. pRolocdata::beltran2016MOCK120
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5747. pRolocdata::beltran2016MOCK24
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5748. pRolocdata::beltran2016MOCK48
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5749. pRolocdata::beltran2016MOCK72
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5750. pRolocdata::beltran2016MOCK96
    Data from Beltran et al. 2016
    rda| rds
    MSnSet
  5751. pRolocdata::courtland_control
    Genetic Disruption of WASHC4 Drives Endo-lysosomal Dysfunction and Cognitive-Movement Impairments in Mice and Humans
    rda| rds
    MSnSet
  5752. pRolocdata::courtland_mutant
    Genetic Disruption of WASHC4 Drives Endo-lysosomal Dysfunction and Cognitive-Movement Impairments in Mice and Humans
    rda| rds
    MSnSet
  5753. pRolocdata::davies2018ap4b1
    AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A
    rda| rds
    MSnSet
  5754. pRolocdata::davies2018ap4e1
    AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A
    rda| rds
    MSnSet
  5755. pRolocdata::davies2018wt
    AP-4 vesicles contribute to spatial control of autophagy via RUSC-dependent peripheral delivery of ATG9A
    rda| rds
    MSnSet
  5756. pRolocdata::dunkley2006
    LOPIT data from Dunkley et al. (2006)
    rda| rds
    MSnSet
  5757. pRolocdata::dunkley2006goCC
    LOPIT data from Dunkley et al. (2006)
    rda| rds
    MSnSet
  5758. pRolocdata::E14TG2aR
    LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al. (2016)
    rda| rds
    MSnSet
  5759. pRolocdata::E14TG2aS1
    LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al. (2016)
    rda| rds
    MSnSet
  5760. pRolocdata::E14TG2aS1goCC
    LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al. (2016)
    rda| rds
    MSnSet
  5761. pRolocdata::E14TG2aS1yLoc
    LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al. (2016)
    rda| rds
    MSnSet
  5762. pRolocdata::E14TG2aS2
    LOPIT experiment on Mouse E14TG2a Embryonic Stem Cells from Breckels et al. (2016)
    rda| rds
    MSnSet
  5763. pRolocdata::fabre2015r1
    Data from Fabre et al. 2015
    rda| rds
    MSnSet
  5764. pRolocdata::fabre2015r2
    Data from Fabre et al. 2015
    rda| rds
    MSnSet
  5765. pRolocdata::foster2006
    PCP data from Foster et al. (2006)
    rda| rds
    MSnSet
  5766. pRolocdata::groen2014cmb
    LOPIT experiments on Arabidopsis thaliana roots, from Groen et al. (2014)
    rda| rds
    MSnSet
  5767. pRolocdata::groen2014r1
    LOPIT experiments on Arabidopsis thaliana roots, from Groen et al. (2014)
    rda| rds
    MSnSet
  5768. pRolocdata::groen2014r1goCC
    LOPIT experiments on Arabidopsis thaliana roots, from Groen et al. (2014)
    rda| rds
    MSnSet
  5769. pRolocdata::groen2014r2
    LOPIT experiments on Arabidopsis thaliana roots, from Groen et al. (2014)
    rda| rds
    MSnSet
  5770. pRolocdata::groen2014r3
    LOPIT experiments on Arabidopsis thaliana roots, from Groen et al. (2014)
    rda| rds
    MSnSet
  5771. pRolocdata::hall2009
    LOPIT data from Hall et al. (2009)
    rda| rds
    MSnSet
  5772. pRolocdata::havugimana2012
    Data from Havugimana et al. 2012
    rda| rds
    MSnSet
  5773. pRolocdata::HEK293T2011
    LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al. (2013)
    rda| rds
    MSnSet
  5774. pRolocdata::HEK293T2011goCC
    LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al. (2013)
    rda| rds
    MSnSet
  5775. pRolocdata::HEK293T2011hpa
    LOPIT experiment on Human Embryonic Kidney fibroblast HEK293T cells from Breckels et al. (2013)
    rda| rds
    MSnSet
  5776. pRolocdata::hirst2018
    Data from Hirst et al. 2018
    rda| rds
    MSnSet
  5777. pRolocdata::hyperLOPIT2015
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5778. pRolocdata::hyperLOPIT2015_se
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    SummarizedExperiment
  5779. pRolocdata::hyperLOPIT2015goCC
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5780. pRolocdata::hyperLOPIT2015ms2
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5781. pRolocdata::hyperLOPIT2015ms2psm
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5782. pRolocdata::hyperLOPIT2015ms3r1
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5783. pRolocdata::hyperLOPIT2015ms3r1psm
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5784. pRolocdata::hyperLOPIT2015ms3r2
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5785. pRolocdata::hyperLOPIT2015ms3r2psm
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5786. pRolocdata::hyperLOPIT2015ms3r3
    Protein and PMS-level hyperLOPIT datasets on Mouse E14TG2a embryonic stem cells from Christoforou et al. (2016).
    rda| rds
    MSnSet
  5787. pRolocdata::hyperLOPITU2OS2017
    2017 and 2018 hyperLOPIT on U2OS cells
    rda| rds
    MSnSet
  5788. pRolocdata::hyperLOPITU2OS2017b
    2017 and 2018 hyperLOPIT on U2OS cells
    rda| rds
    MSnSet
  5789. pRolocdata::hyperLOPITU2OS2018
    2017 and 2018 hyperLOPIT on U2OS cells
    rda| rds
    MSnSet
  5790. pRolocdata::itzhak2016helaCtrl
    Global, quantitative and dynamic mapping of protein subcellular localization
    rda| rds
    MSnSet
  5791. pRolocdata::itzhak2016helaEgf
    Global, quantitative and dynamic mapping of protein subcellular localization
    rda| rds
    MSnSet
  5792. pRolocdata::itzhak2016stcSILAC
    Data from Itzhak et al. (2016)
    rda| rds
    MSnSet
  5793. pRolocdata::itzhak2017
    Data from Itzhak et al. 2017
    rda| rds
    MSnSet
  5794. pRolocdata::itzhak2017markers
    Data from Itzhak et al. 2017
    rda| rds
    MSnSet
  5795. pRolocdata::kirkwood2013
    Data from Kirkwood et al. 2013.
    rda| rds
    MSnSet
  5796. pRolocdata::Kozik_con
    Small molecule enhancers of endosome-to-cytosol import augment anti-tumour immunity
    rda| rds
    MSnSet
  5797. pRolocdata::Kozik_pra
    Small molecule enhancers of endosome-to-cytosol import augment anti-tumour immunity
    rda| rds
    MSnSet
  5798. pRolocdata::Kozik_tam
    Small molecule enhancers of endosome-to-cytosol import augment anti-tumour immunity
    rda| rds
    MSnSet
  5799. pRolocdata::krahmer2018pcp
    Subcellular Reorganization in Diet-Induced Hepatic Steatosis
    rda| rds
    MSnSet
  5800. pRolocdata::krahmer2018phosphopcp
    Subcellular Reorganization in Diet-Induced Hepatic Steatosis
    rda| rds
    MSnSet
  5801. pRolocdata::kristensen2012r1
    Data from Kristensen et al. 2012
    rda| rds
    MSnSet
  5802. pRolocdata::kristensen2012r2
    Data from Kristensen et al. 2012
    rda| rds
    MSnSet
  5803. pRolocdata::kristensen2012r3
    Data from Kristensen et al. 2012
    rda| rds
    MSnSet
  5804. pRolocdata::lopimsSyn1
    LOPIMS data for the Synapter 2.0 paper
    rda| rds
    MSnSet
  5805. pRolocdata::lopimsSyn2
    LOPIMS data for the Synapter 2.0 paper
    rda| rds
    MSnSet
  5806. pRolocdata::lopimsSyn2_0frags
    LOPIMS data for the Synapter 2.0 paper
    rda| rds
    MSnSet
  5807. pRolocdata::lopitdcU2OS2018
    2017 and 2018 hyperLOPIT on U2OS cells
    rda| rds
    MSnSet
  5808. pRolocdata::lpsTimecourse_mulvey2021
    Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
    rda| rds
    MSnSet
  5809. pRolocdata::lpsTimecourse_rep1_mulvey2021
    Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
    rda| rds
    MSnSet
  5810. pRolocdata::lpsTimecourse_rep2_mulvey2021
    Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
    rda| rds
    MSnSet
  5811. pRolocdata::lpsTimecourse_rep3_mulvey2021
    Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
    rda| rds
    MSnSet
  5812. pRolocdata::moloneyTbBSF
    Spatial proteomics datasets from two African trypanosome species
    rda| rds
    MSnSet
  5813. pRolocdata::moloneyTbPCF
    Spatial proteomics datasets from two African trypanosome species
    rda| rds
    MSnSet
  5814. pRolocdata::moloneyTcBSF
    Spatial proteomics datasets from two African trypanosome species
    rda| rds
    MSnSet
  5815. pRolocdata::moloneyTcPCF
    Spatial proteomics datasets from two African trypanosome species
    rda| rds
    MSnSet
  5816. pRolocdata::mulvey2015
    Data from Mulvey et al. 2015
    rda| rds
    MSnSet
  5817. pRolocdata::mulvey2015_se
    Data from Mulvey et al. 2015
    rda| rds
    SummarizedExperiment
  5818. pRolocdata::mulvey2015norm
    Data from Mulvey et al. 2015
    rda| rds
    MSnSet
  5819. pRolocdata::mulvey2015norm_se
    Data from Mulvey et al. 2015
    rda| rds
    SummarizedExperiment
  5820. pRolocdata::nikolovski2012
    Meta-analysis from Nikolovski et al. (2012)
    rda| rds
    MSnSet
  5821. pRolocdata::nikolovski2012imp
    Meta-analysis from Nikolovski et al. (2012)
    rda| rds
    MSnSet
  5822. pRolocdata::nikolovski2014
    LOPIMS data from Nikolovski et al. (2014)
    rda| rds
    MSnSet
  5823. pRolocdata::orre2019a431
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5824. pRolocdata::orre2019h322
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5825. pRolocdata::orre2019hcc827
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5826. pRolocdata::orre2019hcc827gef
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5827. pRolocdata::orre2019hcc827rep1
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5828. pRolocdata::orre2019hcc827rep2
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5829. pRolocdata::orre2019hcc827rep3
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5830. pRolocdata::orre2019mcf7
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5831. pRolocdata::orre2019u251
    SubCellBarCode: Proteome-wide Mapping of Protein Localization and Relocalization
    rda| rds
    MSnSet
  5832. pRolocdata::psms_lpsTimecourse_rep1_mulvey2021
    Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
    rda| rds
    MSnSet
  5833. pRolocdata::psms_lpsTimecourse_rep2_mulvey2021
    Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
    rda| rds
    MSnSet
  5834. pRolocdata::psms_lpsTimecourse_rep3_mulvey2021
    Protein and PMS-level datasets from temporal abundance profiling experiments of THP-1 human leukaema cells stimulated with LPS
    rda| rds
    MSnSet
  5835. pRolocdata::psms_thpLOPIT_lps_rep1_set1
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5836. pRolocdata::psms_thpLOPIT_lps_rep1_set2
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5837. pRolocdata::psms_thpLOPIT_lps_rep2_set1
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5838. pRolocdata::psms_thpLOPIT_lps_rep2_set2
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5839. pRolocdata::psms_thpLOPIT_lps_rep3_set1
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5840. pRolocdata::psms_thpLOPIT_lps_rep3_set2
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5841. pRolocdata::psms_thpLOPIT_unstim_rep1_set1
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5842. pRolocdata::psms_thpLOPIT_unstim_rep1_set2
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5843. pRolocdata::psms_thpLOPIT_unstim_rep2_set1
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5844. pRolocdata::psms_thpLOPIT_unstim_rep2_set2
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5845. pRolocdata::psms_thpLOPIT_unstim_rep3_set1
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5846. pRolocdata::psms_thpLOPIT_unstim_rep3_set2
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5847. pRolocdata::rodriguez2012r1
    Spatial proteomics of human inducible goblet-like LS174T cells from Rodriguez-Pineiro et al. (2012)
    rda| rds
    MSnSet
  5848. pRolocdata::rodriguez2012r2
    Spatial proteomics of human inducible goblet-like LS174T cells from Rodriguez-Pineiro et al. (2012)
    rda| rds
    MSnSet
  5849. pRolocdata::rodriguez2012r3
    Spatial proteomics of human inducible goblet-like LS174T cells from Rodriguez-Pineiro et al. (2012)
    rda| rds
    MSnSet
  5850. pRolocdata::Shin2019MitoControlrep1
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5851. pRolocdata::Shin2019MitoControlrep2
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5852. pRolocdata::Shin2019MitoControlrep3
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5853. pRolocdata::Shin2019MitoGcc88rep1
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5854. pRolocdata::Shin2019MitoGcc88rep2
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5855. pRolocdata::Shin2019MitoGcc88rep3
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5856. pRolocdata::Shin2019MitoGol97rep1
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5857. pRolocdata::Shin2019MitoGol97rep2
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5858. pRolocdata::Shin2019MitoGol97rep3
    Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers
    rda| rds
    MSnSet
  5859. pRolocdata::stekhoven2014
    Data from Stekhoven et al. 2014
    rda| rds
    MSnSet
  5860. pRolocdata::tan2009r1
    LOPIT data from Tan et al. (2009)
    rda| rds
    MSnSet
  5861. pRolocdata::tan2009r1goCC
    LOPIT data from Tan et al. (2009)
    rda| rds
    MSnSet
  5862. pRolocdata::tan2009r2
    LOPIT data from Tan et al. (2009)
    rda| rds
    MSnSet
  5863. pRolocdata::tan2009r3
    LOPIT data from Tan et al. (2009)
    rda| rds
    MSnSet
  5864. pRolocdata::thpLOPIT_lps_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5865. pRolocdata::thpLOPIT_lps_rep1_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5866. pRolocdata::thpLOPIT_lps_rep2_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5867. pRolocdata::thpLOPIT_lps_rep3_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5868. pRolocdata::thpLOPIT_unstimulated_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5869. pRolocdata::thpLOPIT_unstimulated_rep1_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5870. pRolocdata::thpLOPIT_unstimulated_rep2_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5871. pRolocdata::thpLOPIT_unstimulated_rep3_mulvey2021
    Protein and PMS-level hyperLOPIT datasets from THP-1 human leukaema cells
    rda| rds
    MSnSet
  5872. pRolocdata::trotter2010
    LOPIT data sets used in Trotter et al. (2010)
    rda| rds
    MSnSet
  5873. pRolocdata::trotter2010shallow
    LOPIT data sets used in Trotter et al. (2010)
    rda| rds
    MSnSet
  5874. pRolocdata::trotter2010steep
    LOPIT data sets used in Trotter et al. (2010)
    rda| rds
    MSnSet
  5875. pRolocdata::yeast2018
    Saccharomyces cerevisiae spatial proteomics (2018)
    rda| rds
    MSnSet
  5876. PROMISE::phPatt
    Phenotype Pattern Definition Set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 3
  5877. PROMISE::sampExprSet
    An Example Expression Set
    rda| rds
    ExpressionSet
  5878. PROMISE::sampGeneSet
    An Example Gene Set Collection
    rda| rds
    GeneSetCollection
  5879. PRONE::spike_in_de_res
    Example data.table of DE results of a spike-in proteomics data set
    csv| xlsx| json| ndjson| rda| rds
    data.table|7500 x 10
  5880. PRONE::spike_in_se
    Example SummarizedExperiment of a spike-in proteomics data set
    rda| rds
    SummarizedExperiment
  5881. PRONE::tuberculosis_TMT_de_res
    Example data.table of DE results of a real-world proteomics data set
    csv| xlsx| json| ndjson| rda| rds
    data.table|9030 x 9
  5882. PRONE::tuberculosis_TMT_se
    Example SummarizedExperiment of a real-world proteomics data set
    rda| rds
    SummarizedExperiment
  5883. PROPER::GE.human
    Some existing RNA-seq and gene expression microarray data
    json| rda| rds
    numeric
  5884. PROPER::param
    Some existing RNA-seq and gene expression microarray data
    json| rda| rds
    list
  5885. PROPER::param
    Some existing RNA-seq and gene expression microarray data
    json| rda| rds
    list
  5886. PROPER::param
    Some existing RNA-seq and gene expression microarray data
    json| rda| rds
    list
  5887. PROPER::param
    Some existing RNA-seq and gene expression microarray data
    json| rda| rds
    list
  5888. PROPER::pbmc
    Some existing RNA-seq and gene expression microarray data
    csv| json| rda| rds
    matrix|22215 x 2
  5889. PROPS::example_data
    Example data, 50 samples, 22600 genes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 4757
  5890. PROPS::example_edges
    Example pathway edges. Contains 3 randomly generated pathways.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 3
  5891. PROPS::example_healthy
    Example healthy data, 100 samples, 22600 genes.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 4757
  5892. PROPS::kegg_pathway_edges
    KEGG pathway edges
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80642 x 3
  5893. prostateCancerCamcap::camcap
    The Cambridge Cohort from Ross-Adams et al. (2015)
    rda| rds
    ExpressionSet
  5894. prostateCancerGrasso::grasso
    The Grasso Cohort from U. Michigan
    rda| rds
    ExpressionSet
  5895. prostateCancerStockholm::stockholm
    The Stockholm Cohort from Ross-Adams et al. (2015)
    rda| rds
    ExpressionSet
  5896. prostateCancerTaylor::taylor
    The MSKCC Cohort from Taylor et al. (2010)
    rda| rds
    ExpressionSet
  5897. prostateCancerVarambally::varambally
    The Varambally Cohort from U. Michigan et al. (2005)
    rda| rds
    ExpressionSet
  5898. proteinProfiles::annotation
    IPS sample data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|247 x 8
  5899. proteinProfiles::ratios
    IPS sample data
    csv| json| rda| rds
    matrix|247 x 10
  5900. ProteoDisco::ProteoDiscographyExample.hg19
    Example ProteoDiscography.
    rda| rds
    ProteoDiscography
  5901. ProteoMM::hs_peptides
    hs_peptides - peptide-level intensities for human
    csv| xlsx| json| ndjson| rda| rds
    data.frame|695 x 13
  5902. ProteoMM::mm_peptides
    mm_peptides - peptide-level intensities for mouse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1102 x 13
  5903. PtH2O2lipids::ptH2O2lipids
    P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)
    rda| rds
    list
  5904. PTMods::aminoacids
    Amminoacids data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 11
  5905. PTMods::elements
    Elements data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 4
  5906. PTMods::modifications
    Modifications data set.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3704 x 15
  5907. puma::Clust.exampleE
    The example data of the mean gene expression levels
    csv| json| rda| rds
    matrix|700 x 20
  5908. puma::Clust.exampleStd
    The example data of the standard deviation for gene expression levels
    csv| json| rda| rds
    matrix|700 x 20
  5909. puma::Clustii.exampleE
    The example data of the mean gene expression levels
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 80
  5910. puma::Clustii.exampleStd
    The example data of the standard deviation for gene expression levels
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 80
  5911. puma::eset_mmgmos
    An example ExpressionSet created from the Dilution data with mmgmos
    rda| rds
    exprReslt
  5912. puma::exampleE
    The example data of the mean gene expression levels
    csv| json| rda| rds
    matrix|200 x 6
  5913. puma::exampleStd
    The example data of the standard deviation for gene expression levels
    csv| json| rda| rds
    matrix|200 x 6
  5914. puma::hgu95aphis
    Estimated parameters of the distribution of phi
    json| rda| rds
    numeric
  5915. pumadata::affybatch.estrogen
    The data from the estrogen package as an AffyBatch object
    rda| rds
    AffyBatch
  5916. pumadata::eset_estrogen_comb
    The data from the estrogen package processed using the multi-mgMOS and PUMAcomb algorithms
    rda| rds
    ExpressionSet
  5917. pumadata::eset_estrogen_mmgmos
    The data from the estrogen package processed using the multi-mgMOS algorithm
    rda| rds
    exprReslt
  5918. pumadata::eset_estrogen_pmmmgmos
    The data from the estrogen package processed using the multi-mgMOS use PM intensities only
    rda| rds
    exprReslt
  5919. pumadata::eset_estrogen_rma
    The data from the estrogen package processed using the RMA algorithm
    rda| rds
    ExpressionSet
  5920. pumadata::HTA_Location
    The coordinates of probes and the mapped PM probes for hta2.0 chips
    csv| json| rda| rds
    matrix|1 x 0
  5921. pumadata::HTA_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for hta2.0 chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33413 x 2
  5922. pumadata::HTA_transcript_name
    The names of transcripts mapped to each gene for hta2.0 chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|225447 x 1
  5923. pumadata::HTA_transcript_NO
    The coordinates of probes and the mapped transcripts for hta2.0 chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20628686 x 3
  5924. pumadata::Human_Location
    The coordinates of probes and the mapped PM for human exon chips
    csv| json| rda| rds
    matrix|1 x 0
  5925. pumadata::Human_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for human exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40174 x 2
  5926. pumadata::Human_transcript_name
    The names of transcripts mapped to each gene for human exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|121741 x 1
  5927. pumadata::Human_transcript_NO
    The coordinates of probes and the mapped transcripts for human exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4598850 x 3
  5928. pumadata::Mouse_Location
    The coordinates of probes and the mapped PM for Mouse exon chips
    csv| json| rda| rds
    matrix|1 x 0
  5929. pumadata::Mouse_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for mouse exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27719 x 2
  5930. pumadata::Mouse_transcript_name
    The names of transcripts mapped to each gene for mouse exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|75751 x 1
  5931. pumadata::Mouse_transcript_NO
    The coordinates of probes and the mapped transcripts mapped for mouse exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2928488 x 3
  5932. pumadata::oligo.estrogen
    The data from the estrogen package as an ExpressionFeatureSet object
    rda| rds
    ExpressionFeatureSet
  5933. pumadata::pumapca_estrogen
    The data from the estrogen package processed using the pumaPCA algorithm
    rda| rds
    pumaPCARes
  5934. pumadata::Rat_Location
    The coordinates of probes and the mapped PM for Rat exon chips
    csv| json| rda| rds
    matrix|1 x 0
  5935. pumadata::Rat_probes_transcripts
    The number of probes and the number of transcripts mapped to each gene for rat exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23585 x 2
  5936. pumadata::Rat_transcript_name
    The names of transcripts mapped to each gene for rat exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33485 x 1
  5937. pumadata::Rat_transcript_NO
    The coordinates of probes and the mapped transcripts for rat exon chips
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1491570 x 3
  5938. PureCN::centromeres
    A list of data.frames containing centromere positions.
    rda| rds
    list
  5939. PureCN::purecn.DNAcopy.bdry
    DNAcopy boundary data
    json| rda| rds
    integer
  5940. PureCN::purecn.example.output
    Example output
    rda| rds
    list
  5941. pwalign::BLOSUM100
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  5942. pwalign::BLOSUM45
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  5943. pwalign::BLOSUM50
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  5944. pwalign::BLOSUM62
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  5945. pwalign::BLOSUM80
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  5946. pwalign::PAM120
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  5947. pwalign::PAM250
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  5948. pwalign::PAM30
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  5949. pwalign::PAM40
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  5950. pwalign::PAM70
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  5951. pwalign::phiX174Phage
    Versions of bacteriophage phiX174 complete genome and sample short reads
    rda| rds
    DNAStringSet
  5952. pwalign::quPhiX174
    Versions of bacteriophage phiX174 complete genome and sample short reads
    rda| rds
    BStringSet
  5953. pwalign::srPhiX174
    Versions of bacteriophage phiX174 complete genome and sample short reads
    rda| rds
    DNAStringSet
  5954. pwalign::wtPhiX174
    Versions of bacteriophage phiX174 complete genome and sample short reads
    json| rda| rds
    integer
  5955. PWMEnrich.Dmelanogaster.background::dm3.upstream2000
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    DNAStringSet
  5956. PWMEnrich.Dmelanogaster.background::MotifDb.Dmel
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    list
  5957. PWMEnrich.Dmelanogaster.background::MotifDb.Dmel.PFM
    PWMEnrich.Dmelanogaster.background package overview
    json| rda| rds
    list
  5958. PWMEnrich.Dmelanogaster.background::PWMCutoff4.dm3.MotifDb.Dmel
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    PWMCutoffBackground
  5959. PWMEnrich.Dmelanogaster.background::PWMCutoff5.dm3.MotifDb.Dmel
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    PWMCutoffBackground
  5960. PWMEnrich.Dmelanogaster.background::PWMLogn.dm3.MotifDb.Dmel
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    PWMLognBackground
  5961. PWMEnrich.Dmelanogaster.background::PWMPvalueCutoff1e2.dm3.MotifDb.Dmel
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    PWMCutoffBackground
  5962. PWMEnrich.Dmelanogaster.background::PWMPvalueCutoff1e3.dm3.MotifDb.Dmel
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    PWMCutoffBackground
  5963. PWMEnrich.Dmelanogaster.background::PWMPvalueCutoff1e4.dm3.MotifDb.Dmel
    PWMEnrich.Dmelanogaster.background package overview
    rda| rds
    PWMCutoffBackground
  5964. PWMEnrich.Hsapiens.background::hg19.upstream2000
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    DNAStringSet
  5965. PWMEnrich.Hsapiens.background::MotifDb.Hsap
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    list
  5966. PWMEnrich.Hsapiens.background::MotifDb.Hsap.PFM
    PWMEnrich.Hsapiens.background package overview
    json| rda| rds
    list
  5967. PWMEnrich.Hsapiens.background::PWMCutoff4.hg19.MotifDb.Hsap
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    PWMCutoffBackground
  5968. PWMEnrich.Hsapiens.background::PWMCutoff5.hg19.MotifDb.Hsap
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    PWMCutoffBackground
  5969. PWMEnrich.Hsapiens.background::PWMLogn.hg19.MotifDb.Hsap
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    PWMLognBackground
  5970. PWMEnrich.Hsapiens.background::PWMPvalueCutoff1e2.hg19.MotifDb.Hsap
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    PWMCutoffBackground
  5971. PWMEnrich.Hsapiens.background::PWMPvalueCutoff1e3.hg19.MotifDb.Hsap
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    PWMCutoffBackground
  5972. PWMEnrich.Hsapiens.background::PWMPvalueCutoff1e4.hg19.MotifDb.Hsap
    PWMEnrich.Hsapiens.background package overview
    rda| rds
    PWMCutoffBackground
  5973. PWMEnrich.Mmusculus.background::mm9.upstream2000
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    DNAStringSet
  5974. PWMEnrich.Mmusculus.background::MotifDb.Mmus
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    list
  5975. PWMEnrich.Mmusculus.background::MotifDb.Mmus.PFM
    PWMEnrich.Mmusculus.background package overview
    json| rda| rds
    list
  5976. PWMEnrich.Mmusculus.background::PWMCutoff4.mm9.MotifDb.Mmus
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    PWMCutoffBackground
  5977. PWMEnrich.Mmusculus.background::PWMCutoff5.mm9.MotifDb.Mmus
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    PWMCutoffBackground
  5978. PWMEnrich.Mmusculus.background::PWMLogn.mm9.MotifDb.Mmus
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    PWMLognBackground
  5979. PWMEnrich.Mmusculus.background::PWMPvalueCutoff1e2.mm9.MotifDb.Mmus
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    PWMCutoffBackground
  5980. PWMEnrich.Mmusculus.background::PWMPvalueCutoff1e3.mm9.MotifDb.Mmus
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    PWMCutoffBackground
  5981. PWMEnrich.Mmusculus.background::PWMPvalueCutoff1e4.mm9.MotifDb.Mmus
    PWMEnrich.Mmusculus.background package overview
    rda| rds
    PWMCutoffBackground
  5982. qcmetrics::psm
    15N example data
    rda| rds
    MSnSet
  5983. QDNAseq::LGG150
    LGG150 chromosomes 7-10
    rda| rds
    QDNAseqReadCounts
  5984. QDNAseq.hg19::hg19.1000kbp.SR50
    Hg19 1000kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5985. QDNAseq.hg19::hg19.100kbp.SR50
    Hg19 100kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5986. QDNAseq.hg19::hg19.10kbp.SR50
    Hg19 10kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5987. QDNAseq.hg19::hg19.15kbp.SR50
    Hg19 15kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5988. QDNAseq.hg19::hg19.1kbp.SR50
    Hg19 1kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5989. QDNAseq.hg19::hg19.30kbp.SR50
    Hg19 30kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5990. QDNAseq.hg19::hg19.500kbp.SR50
    Hg19 500kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5991. QDNAseq.hg19::hg19.50kbp.SR50
    Hg19 50kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5992. QDNAseq.hg19::hg19.5kbp.SR50
    Hg19 5kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5993. QDNAseq.mm10::mm10.1000kbp.SR50
    Mm10 1000kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5994. QDNAseq.mm10::mm10.100kbp.SR50
    Mm10 100kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5995. QDNAseq.mm10::mm10.10kbp.SR50
    Mm10 10kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5996. QDNAseq.mm10::mm10.15kbp.SR50
    Mm10 15kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5997. QDNAseq.mm10::mm10.1kbp.SR50
    Mm10 1kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5998. QDNAseq.mm10::mm10.30kbp.SR50
    Mm10 30kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  5999. QDNAseq.mm10::mm10.500kbp.SR50
    Mm10 500kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  6000. QDNAseq.mm10::mm10.50kbp.SR50
    Mm10 50kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  6001. QDNAseq.mm10::mm10.5kbp.SR50
    Mm10 5kbp bin annotations
    rda| rds
    AnnotatedDataFrame
  6002. QFeatures::feat1
    Feature example data
    rda| rds
    QFeatures
  6003. QFeatures::feat2
    Feature example data
    rda| rds
    QFeatures
  6004. QFeatures::feat3
    Example 'QFeatures' object after processing
    rda| rds
    QFeatures
  6005. QFeatures::feat4
    Example 'QFeatures'
    rda| rds
    QFeatures
  6006. QFeatures::ft_na
    Feature example data
    rda| rds
    QFeatures
  6007. QFeatures::hlpsms
    hyperLOPIT PSM-level expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3010 x 28
  6008. QFeatures::se_na2
    Feature example data
    rda| rds
    SummarizedExperiment
  6009. QFeaturesGUI::inputTable
    Example MaxQuant/SCoPE2 output
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1361 x 149
  6010. QFeaturesGUI::sampleTable
    Single-cell sample annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64 x 6
  6011. qmtools::faahko_se
    FAAH knockout LC/MS data SummarizedExperiment
    rda| rds
    SummarizedExperiment
  6012. qpcrNorm::qpcrBatch.object
    qpcrBatch instance qpcrBatch.object
    rda| rds
    qpcrBatch
  6013. qpgraph::filtered.regulon6.1
    Preprocessed microarray oxygen deprivation data and filtered RegulonDB data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3283 x 5
  6014. qpgraph::gds680.eset
    Preprocessed microarray oxygen deprivation data and filtered RegulonDB data
    rda| rds
    ExpressionSet
  6015. qpgraph::subset.filtered.regulon6.1
    Preprocessed microarray oxygen deprivation data and filtered RegulonDB data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|681 x 5
  6016. qpgraph::subset.gds680.eset
    Preprocessed microarray oxygen deprivation data and filtered RegulonDB data
    rda| rds
    ExpressionSet
  6017. qPLEXanalyzer::ER_ARID1A_KO_MCF7
    ER_ARID1A_KO_MCF7 dataset
    json| rda| rds
    list
  6018. qPLEXanalyzer::exp2_Xlink
    exp2_Xlink dataset
    json| rda| rds
    list
  6019. qPLEXanalyzer::exp3_OHT_ESR1
    exp3_OHT_ESR1 dataset
    json| rda| rds
    list
  6020. qPLEXanalyzer::human_anno
    human_anno dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20386 x 4
  6021. qPLEXanalyzer::mouse_anno
    mouse_anno dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17119 x 4
  6022. qPLEXdata::exp1_specificity
    exp1_specificity dataset
    json| rda| rds
    list
  6023. qPLEXdata::exp2_Xlink
    exp2_Xlink dataset
    json| rda| rds
    list
  6024. qPLEXdata::exp3_OHT_ESR1
    exp3_OHT_ESR1 dataset
    json| rda| rds
    list
  6025. qPLEXdata::exp4_OHT_FP
    exp4_OHT_FP dataset
    json| rda| rds
    list
  6026. qPLEXdata::exp5_PDX
    exp5_PDX dataset
    json| rda| rds
    list
  6027. qPLEXdata::exp6_ER
    exp6_ER dataset
    json| rda| rds
    list
  6028. qPLEXdata::exp7_NCOA3
    exp7_NCOA3 dataset
    json| rda| rds
    list
  6029. qPLEXdata::exp8_CBP
    exp8_CBP dataset
    json| rda| rds
    list
  6030. qPLEXdata::exp9_PolII
    exp9_PolII dataset
    json| rda| rds
    list
  6031. QRscore::example_dataset
    Example Dataset for MOCHIS DEG Analysis
    json| rda| rds
    list
  6032. QRscore::example_dataset_raw_3000_genes
    Example Dataset for MOCHIS DEG Analysis with Raw Counts
    json| rda| rds
    list
  6033. qsmooth::gc
    csv| json| rda| rds
    matrix|18629 x 2
  6034. qsvaR::degradation_tstats
    Degradation time t-statistics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45082 x 1
  6035. qsvaR::rse_tx
    Example of RSE object with RNA-seq transcript quantification data
    rda| rds
    RangedSummarizedExperiment
  6036. qsvaR::transcripts
    Transcripts for Degradation Models
    csv| json| rda| rds
    list
  6037. quantiseqr::dataset_racle
    An exemplary dataset with samples from four patients with metastatic melanoma
    rda| rds
    environment
  6038. quantiseqr::ti_quant_sim1700mixtures
    quanTIseq output for the simulation data of 1700 mixtures for RNA-seq data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1700 x 12
  6039. quantro::flowSorted
    A subset of FlowSorted.DLPFC.450k data set
    rda| rds
    MethylSet
  6040. quantsmooth::affy.cn
    Example data from several quantitative genomic methods
    csv| xlsx| json| ndjson| rda| rds
    data.frame|358 x 3
  6041. quantsmooth::affy.pos
    Example data from several quantitative genomic methods
    json| rda| rds
    numeric
  6042. quantsmooth::bac.cn
    Example data from several quantitative genomic methods
    csv| json| rda| rds
    matrix|112 x 3
  6043. quantsmooth::bac.pos
    Example data from several quantitative genomic methods
    json| rda| rds
    numeric
  6044. quantsmooth::chrom.bands
    Dataset of human chromosomes and their banding patterns
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4068 x 12
  6045. quantsmooth::chrom.bands.hg18
    Dataset of human chromosomes and their banding patterns
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 5
  6046. quantsmooth::chrom.bands.hg19
    Dataset of human chromosomes and their banding patterns
    csv| xlsx| json| ndjson| rda| rds
    data.frame|931 x 5
  6047. quantsmooth::chrom.bands.hg38
    Dataset of human chromosomes and their banding patterns
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1293 x 5
  6048. quantsmooth::chrom.bands.mm10
    Dataset of human chromosomes and their banding patterns
    csv| xlsx| json| ndjson| rda| rds
    data.frame|448 x 5
  6049. quantsmooth::ill.cn
    Example data from several quantitative genomic methods
    csv| json| rda| rds
    matrix|207 x 3
  6050. quantsmooth::ill.pos
    Example data from several quantitative genomic methods
    json| rda| rds
    integer
  6051. QUBICdata::ecoli
    E.coli
    csv| json| rda| rds
    matrix|4297 x 0
  6052. QUBICdata::ecoli.weight
    E.coli Weight
    rda| rds
    dgCMatrix
  6053. qusage::BTM.geneSets
    Example Gene Sets
    json| rda| rds
    list
  6054. qusage::eset.full
    Example gene expression set
    csv| json| rda| rds
    matrix|4147 x 252
  6055. qusage::flu.meta
    Example gene expression set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|252 x 7
  6056. qusage::fluVaccine
    Gene expression sets from Flu Vaccine trials
    json| rda| rds
    list
  6057. qusage::ISG.geneSet
    Example Gene Sets
    json| rda| rds
    character
  6058. qusage::MSIG.geneSets
    Example Gene Sets
    json| rda| rds
    list
  6059. qvalue::hedenfalk
    P-values and test-statistics from the Hedenfalk et al. (2001) gene expression dataset
    json| rda| rds
    list
  6060. R3CPET::Chromosoms
    Human chromosom lenghts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 2
  6061. R3CPET::geneLocations.nucleus
    Nucleus located genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5736 x 11
  6062. R3CPET::PPI.Biogrid
    Biogrid Network
    rda| rds
    igraph
  6063. R3CPET::PPI.HPRD
    HPRD protein interaction Network
    rda| rds
    igraph
  6064. R3CPET::RPKMS
    A gene expression dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30627 x 2
  6065. R453Plus1Toolbox::avaSetExample
    Amplicon Variant Analyzer data import
    rda| rds
    AVASet
  6066. R453Plus1Toolbox::avaSetFiltered
    Amplicon Variant Analyzer data import
    rda| rds
    AVASet
  6067. R453Plus1Toolbox::avaSetFiltered_annot
    AVASet variant annotations
    rda| rds
    AnnotatedVariants
  6068. R453Plus1Toolbox::breakpoints
    Putative breakpoints of chimeric reads
    rda| rds
    Breakpoints
  6069. R453Plus1Toolbox::captureArray
    Custom capture array design
    rda| rds
    CompressedIRangesList
  6070. R453Plus1Toolbox::mapperSetExample
    GS Reference Mapper data import
    rda| rds
    MapperSet
  6071. R453Plus1Toolbox::mutationInfo
    Example data for 'plotVariants'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 3
  6072. R453Plus1Toolbox::regions
    Example data for 'plotVariants'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 4
  6073. R453Plus1Toolbox::variants
    Example data for 'plotVariants'
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 4
  6074. R4RNA::fasta
    Helices predicted by TRANSAT with p-values
    json| rda| rds
    character
  6075. R4RNA::helix
    Helices predicted by TRANSAT with p-values
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56 x 4
  6076. R4RNA::known
    Helices predicted by TRANSAT with p-values
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 4
  6077. RadioGx::clevelandSmall
    Cleaveland_mut RadioSet subsetted
    rda| rds
    RadioSet
  6078. RAIDS::demoKnownSuperPop1KG
    The known super population ancestry of the demo 1KG reference profiles.
    json| rda| rds
    character
  6079. RAIDS::demoPCA1KG
    The PCA results of the demo 1KG reference dataset for demonstration purpose. Beware that the PCA has been run on a very small subset of the 1KG reference dataset and should not be used to call ancestry inference on a real profile.
    rda| rds
    list
  6080. RAIDS::demoPCASyntheticProfiles
    The PCA result of demo synthetic profiles projected on the demo subset 1KG reference PCA.
    json| rda| rds
    list
  6081. RAIDS::demoPedigreeEx1
    The pedigree information about a demo profile called 'ex1'.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 5
  6082. RAIDS::matKNNSynthetic
    A small 'data.frame' containing the inferred ancestry on the synthetic profiles.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10192 x 4
  6083. RAIDS::pedSynthetic
    A small 'data.frame' containing the information related to synthetic profiles. The ancestry of the profiles used to generate the synthetic profiles must be present.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52 x 7
  6084. RAIDS::snpPositionDemo
    A small 'data.frame' containing the SNV information.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 17
  6085. rain::menetRNASeqMouseLiver
    Time courses of gene expression in mouse liver
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20069 x 12
  6086. ramr::ramr.data
    Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
    rda| rds
    GRanges
  6087. ramr::ramr.samples
    Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
    json| rda| rds
    character
  6088. ramr::ramr.tp.nonunique
    Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
    rda| rds
    GRanges
  6089. ramr::ramr.tp.unique
    Simulated Illumina HumanMethylation 450k data set with 3000 CpGs and 100 samples
    rda| rds
    GRanges
  6090. randPack::alltabs
    demonstration data for use with randPack
    csv| json| rda| rds
    matrix|10 x 0
  6091. randPack::CT1
    demonstration data for use with randPack
    rda| rds
    ClinicalTrial
  6092. randPack::pD1
    demonstration data for use with randPack
    rda| rds
    PatientData
  6093. randPack::SampleData
    Randomly generated data representing a potential patient cohort.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|78 x 7
  6094. randPack::sco
    demonstration data for use with randPack
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 4
  6095. RankProd::apples.cl
    Metabolomics data on spiked apples
    json| rda| rds
    numeric
  6096. RankProd::apples.data
    Metabolomics data on spiked apples
    json| rda| rds
    AsIs|197 x 20
  6097. RankProd::apples.data.vsn
    Metabolomics data on spiked apples
    csv| json| rda| rds
    matrix|197 x 20
  6098. RankProd::arab
    Genomic Response to Brassinosteroid in Arabidopsis
    csv| json| rda| rds
    matrix|500 x 10
  6099. RankProd::arab.cl
    Genomic Response to Brassinosteroid in Arabidopsis
    json| rda| rds
    numeric
  6100. RankProd::arab.gnames
    Genomic Response to Brassinosteroid in Arabidopsis
    json| rda| rds
    character
  6101. RankProd::arab.origin
    Genomic Response to Brassinosteroid in Arabidopsis
    json| rda| rds
    numeric
  6102. RankProd::Biom
    Metabolomics data on spiked apples
    json| rda| rds
    numeric
  6103. RankProd::golub
    A subset of the Gene expression dataset from Golub et al. (1999)
    csv| json| rda| rds
    matrix|500 x 0
  6104. RankProd::golub.cl
    A subset of the Gene expression dataset from Golub et al. (1999)
    json| rda| rds
    numeric
  6105. RankProd::golub.gnames
    A subset of the Gene expression dataset from Golub et al. (1999)
    csv| json| rda| rds
    matrix|500 x 0
  6106. RankProd::lym.exp
    Subset of the Intensity data for 8 cDNA slides with CLL and DLBL samples from the Alizadeh et al. paper in Nature 2000
    csv| json| rda| rds
    matrix|500 x 16
  6107. RankProd::mz
    Metabolomics data on spiked apples
    json| rda| rds
    numeric
  6108. RankProd::rt
    Metabolomics data on spiked apples
    json| rda| rds
    numeric
  6109. RAREsim::afs_afr
    African/African American target data from gnomAD v2.1 (Karczewski, 2020)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 3
  6110. RAREsim::nvariant_afr
    African target data for the Number of Variants function from gnomADv2.1 (Karczewski, 2020)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 2
  6111. RbcBook1::bcr.cor
    Illustrative datasets for distance measures
    rda| rds
    dist
  6112. RbcBook1::bcr.euc
    Illustrative datasets for distance measures
    rda| rds
    dist
  6113. RbcBook1::bcr.kldist
    Illustrative datasets for distance measures
    rda| rds
    dist
  6114. RbcBook1::bcr.man
    Illustrative datasets for distance measures
    rda| rds
    dist
  6115. RbcBook1::bcr.mi
    Illustrative datasets for distance measures
    rda| rds
    dist
  6116. RbcBook1::bcr.spear
    Illustrative datasets for distance measures
    rda| rds
    dist
  6117. RbcBook1::bcr.tau
    Illustrative datasets for distance measures
    rda| rds
    dist
  6118. RbcBook1::performance
    Results of tedious computations for computational inference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 4
  6119. RbcBook1::performance
    Results of tedious computations for computational inference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 4
  6120. RbcBook1::performance
    Results of tedious computations for computational inference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 2
  6121. RBGL::FileDep
    FileDep: a graphNEL object representing a file dependency dataset example in boost graph library
    rda| rds
    graphNEL
  6122. rBiopaxParser::biopax
    Biopax example data set
    rda| rds
    biopax
  6123. rBiopaxParser::biopaxLevel3Example
    Biopax example data set
    json| rda| rds
    biopax
  6124. RBM::ovarian_cancer_methylation
    ovarian cancer methylation example from United Kingdom Ovarian Cancer Population Study (UKOPS)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 9
  6125. rbsurv::gliomaSet
    Gene expression and survival data of the patients with gliomas
    rda| rds
    ExpressionSet
  6126. RCAS::gff
    Sample GFF file imported as a GRanges object
    rda| rds
    GRanges
  6127. RCAS::queryRegions
    Sample BED file imported as a GRanges object
    rda| rds
    GRanges
  6128. RCASPAR::Bergamaschi
    Gene expression data of 82 patients with 10 genes as covariates
    csv| json| rda| rds
    matrix|82 x 10
  6129. RCASPAR::survData
    Survial data of 82 patients
    csv| xlsx| json| ndjson| rda| rds
    data.frame|82 x 10
  6130. rcellminer::Drug_MOA_Key
    A data frame with descriptive information for all compound mechanism of action (MOA) abbreviations used in CellMiner.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|230 x 4
  6131. rcellminerData::drugData
    CellMiner compound data: NCI-60 activity and metadata
    rda| rds
    DrugData
  6132. rcellminerData::molData
    CellMiner molecular profiling data for the NCI-60 cell lines.
    rda| rds
    MolData
  6133. rCGH::agilentDB
    aCGH Agilent Probes GC Fraction
    csv| xlsx| json| ndjson| rda| rds
    data.frame|411056 x 2
  6134. rCGH::hg18
    Hg18 Chromosome Lengths and Centromere Locations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25 x 5
  6135. rCGH::hg19
    Hg19 Chromosome Lengths and Centromere Locations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 5
  6136. rCGH::hg38
    Hg38 Chromosome Lengths and Centromere Locations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 5
  6137. RCM::Zeller
    Microbiomes of colorectal cancer patients and healthy controls
    rda| rds
    phyloseq
  6138. Rcpi::AA2DACOR
    2D Autocorrelations Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 92
  6139. Rcpi::AA3DMoRSE
    3D-MoRSE Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 160
  6140. Rcpi::AAACF
    Atom-Centred Fragments Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 6
  6141. Rcpi::AABLOSUM100
    BLOSUM100 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6142. Rcpi::AABLOSUM45
    BLOSUM45 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6143. Rcpi::AABLOSUM50
    BLOSUM50 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6144. Rcpi::AABLOSUM62
    BLOSUM62 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6145. Rcpi::AABLOSUM80
    BLOSUM80 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6146. Rcpi::AABurden
    Burden Eigenvalues Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 62
  6147. Rcpi::AAConn
    Connectivity Indices Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 33
  6148. Rcpi::AAConst
    Constitutional Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 23
  6149. Rcpi::AACPSA
    CPSA Descriptors for 20 Amino Acids calculated by Discovery Studio
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 41
  6150. Rcpi::AADescAll
    All 2D Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 1171
  6151. Rcpi::AAEdgeAdj
    Edge Adjacency Indices Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 97
  6152. Rcpi::AAEigIdx
    Eigenvalue-Based Indices Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 44
  6153. Rcpi::AAFGC
    Functional Group Counts Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 5
  6154. Rcpi::AAGeom
    Geometrical Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 41
  6155. Rcpi::AAGETAWAY
    GETAWAY Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 194
  6156. Rcpi::AAindex
    AAindex Data of 544 Physicochemical and Biological Properties for 20 Amino Acids
    csv| xlsx| json| ndjson| rda| rds
    data.frame|544 x 26
  6157. Rcpi::AAInfo
    Information Indices Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 47
  6158. Rcpi::AAMetaInfo
    Meta Information for the 20 Amino Acids
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 6
  6159. Rcpi::AAMOE2D
    2D Descriptors for 20 Amino Acids calculated by MOE 2011.10
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 148
  6160. Rcpi::AAMOE3D
    3D Descriptors for 20 Amino Acids calculated by MOE 2011.10
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 143
  6161. Rcpi::AAMolProp
    Molecular Properties Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 12
  6162. Rcpi::AAPAM120
    PAM120 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6163. Rcpi::AAPAM250
    PAM250 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6164. Rcpi::AAPAM30
    PAM30 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6165. Rcpi::AAPAM40
    PAM40 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6166. Rcpi::AAPAM70
    PAM70 Matrix for 20 Amino Acids
    csv| json| rda| rds
    matrix|20 x 20
  6167. Rcpi::AARandic
    Randic Molecular Profiles Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 41
  6168. Rcpi::AARDF
    RDF Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 82
  6169. Rcpi::AATopo
    Topological Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 78
  6170. Rcpi::AATopoChg
    Topological Charge Indices Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 15
  6171. Rcpi::AAWalk
    Walk and Path Counts Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 40
  6172. Rcpi::AAWHIM
    WHIM Descriptors for 20 Amino Acids calculated by Dragon
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 99
  6173. RCSL::ann
    Cell type annotations of 'yan' datasets by Yan et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 1
  6174. RCSL::yan
    A public scRNA-seq dataset by Yan et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20214 x 90
  6175. Rdisop::isotopes
    isotope information.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|398 x 4
  6176. Rdisop::mono_masses
    Monoisotopic mass information..
    json| rda| rds
    numeric
  6177. ReactomeGSA.data::.Random.seed
    json| rda| rds
    integer
  6178. ReactomeGSA.data::griss_melanoma_proteomics
    Proteomics intensity-based quantitation data from the B-Cell melanoma induction study by Griss et al.
    json| rda| rds
    EList
  6179. ReactomeGSA.data::griss_melanoma_result
    Example Camera result created based on the melanoma induction study by Griss et al.
    rda| rds
    ReactomeAnalysisResult
  6180. ReactomeGSA.data::griss_melanoma_rnaseq
    Raw RNA-seq read counts from the B-Cell melanoma induction study by Griss et al.
    json| rda| rds
    DGEList
  6181. ReactomeGSA.data::jerby_b_cells
    Example Seurat object containing B cells extracted from the single-cell RNA-seq dataset published by Jerby-Arnon et al.
    rda| rds
    Seurat
  6182. REBET::genotypes
    Data for the example
    csv| json| rda| rds
    matrix|4000 x 0
  6183. REBET::response
    Data for the example
    json| rda| rds
    integer
  6184. REBET::subRegions
    Data for the example
    json| rda| rds
    integer
  6185. reconsi::Vandeputte
    Microbiomes of Crohn's disease patients and healthy controls
    rda| rds
    phyloseq
  6186. recount::recount_abstract
    Summary information at the project level for the recount project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2041 x 4
  6187. recount::recount_exons
    Exon annotation used in recount
    rda| rds
    CompressedGRangesList
  6188. recount::recount_genes
    Gene annotation used in recount
    rda| rds
    GRanges
  6189. recount::recount_url
    Files and URLs hosted by the recount project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|97229 x 6
  6190. recount::rse_gene_SRP009615
    RangedSummarizedExperiment at the gene level for study SRP009615
    rda| rds
    RangedSummarizedExperiment
  6191. recoup::test.design
    Reference and genomic sample regions for recoup testing
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 2
  6192. recoup::test.exons
    Reference and genomic sample regions for recoup testing
    rda| rds
    CompressedGRangesList
  6193. recoup::test.genome
    Reference and genomic sample regions for recoup testing
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 5
  6194. recoup::test.input
    Reference and genomic sample regions for recoup testing
    rda| rds
    list
  6195. RedeR::ER.limma
    Pre-processed dataset for RedeR case studies.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2900 x 12
  6196. RedeR::hs.inter
    Pre-processed igraph object for RedeR case studies.
    rda| rds
    igraph
  6197. REDseq::example.assignedREDseq
    an example assigned REDseq dataset
    json| rda| rds
    list
  6198. REDseq::example.map
    an example REmap dataset
    rda| rds
    GRanges
  6199. REDseq::example.REDseq
    an example sequencing dataset from a restoration enzyme digestion (RED) experiment
    rda| rds
    GRanges
  6200. RegEnrich::Lyme_GSE63085
    Example RNAseq dataset [Human]
    json| rda| rds
    list
  6201. RegEnrich::TFs
    Human gene regulators
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1712 x 2
  6202. RegionalST::example_sce
    Example single cell experiment for input
    rda| rds
    SingleCellExperiment
  6203. RegionalST::exampleRes
    Example DE output
    json| rda| rds
    list
  6204. RegionalST::pathways_hallmark
    Hallmark database
    json| rda| rds
    list
  6205. RegionalST::pathways_kegg
    KEGG database
    json| rda| rds
    list
  6206. RegionalST::pathways_reactome
    REACTOME database
    json| rda| rds
    list
  6207. regioneReloaded::AlienGenome
    AlienGenome
    rda| rds
    GRanges
  6208. regioneReloaded::AlienRSList_broad
    AlienRSList_broad
    rda| rds
    list
  6209. regioneReloaded::AlienRSList_narrow
    AlienRSList_narrow
    rda| rds
    list
  6210. regioneReloaded::cw_Alien_RaR
    cw_Alien_RaR
    rda| rds
    genoMatriXeR
  6211. regioneReloaded::cw_Alien_ReG
    cw_Alien_ReG
    rda| rds
    genoMatriXeR
  6212. regioneReloaded::cw_Alien_ReG_no_Square
    cw_Alien_ReG_no_Square
    rda| rds
    genoMatriXeR
  6213. regioneReloaded::cw_Alien_ReR
    cw_Alien_ReR
    rda| rds
    genoMatriXeR
  6214. regioneReloaded::mLZ_regA_ReG
    mLZ_regA_ReG
    rda| rds
    multiLocalZScore
  6215. regioneReloaded::mLZ_regA_ReG_br
    mLZ_regA_ReG_br
    rda| rds
    multiLocalZScore
  6216. regioneReloaded::mLZ_regD_ReG
    mLZ_regD_ReG
    rda| rds
    multiLocalZScore
  6217. REMP::Alu.hg19.demo
    Subset of Alu genomic location dataset (hg19)
    rda| rds
    GRanges
  6218. REMP::Alu.hg38.demo
    Subset of Alu genomic location dataset (hg38)
    rda| rds
    GRanges
  6219. ReportingTools::mockRnaSeqData
    A counts table of mock RNA-deq data in mouse.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18760 x 6
  6220. RESOLVE::association_mutations
    List providing mutations as binary variables and signatures assignments for 656 breast cancer patients
    json| rda| rds
    list
  6221. RESOLVE::association_survival
    List providing clinical data and signatures assignments for 359 pancreatic cancer patients
    json| rda| rds
    list
  6222. RESOLVE::background
    Germline replication error
    json| rda| rds
    numeric
  6223. RESOLVE::background2
    COSMIC replication error
    json| rda| rds
    numeric
  6224. RESOLVE::cn_example_reduced
    A reduced version of the copy number data for 5 TCGA samples in the format compatible with the import function
    csv| xlsx| json| ndjson| rda| rds
    data.frame|353 x 6
  6225. RESOLVE::id_example_reduced
    A reduced version of the indel data for 3 samples in the format compatible with the import function
    csv| xlsx| json| ndjson| rda| rds
    data.frame|489 x 6
  6226. RESOLVE::patients
    Point mutations for 560 breast tumors
    csv| json| rda| rds
    matrix|560 x 96
  6227. RESOLVE::plot_data_examples
    List data structure to run examples
    json| rda| rds
    list
  6228. RESOLVE::sbs_assignments
    SBS assignments for 560 breast tumors
    json| rda| rds
    list
  6229. RESOLVE::ssm560_reduced
    A reduced version of the point mutations for 560 breast tumors in the format compatible with the import function
    csv| xlsx| json| ndjson| rda| rds
    data.table|22828 x 6
  6230. retrofit::testSimulationData
    simulation data
    json| rda| rds
    list
  6231. retrofit::vignetteColonData
    colon vignette
    json| rda| rds
    list
  6232. retrofit::vignetteSimulationData
    simulation vignette
    json| rda| rds
    list
  6233. rexposome::ex_imp
    'imExposomeSet' for testing purpouses
    rda| rds
    imExposomeSet
  6234. rexposome::expo
    'ExposomeSet' for testing purpouses
    rda| rds
    ExposomeSet
  6235. rexposome::expo_c
    'ExposomeClust' for testing purpouses
    rda| rds
    ExposomeClust
  6236. rexposome::me
    'data.frame' for testing purpouses
    csv| xlsx| json| ndjson| rda| rds
    data.frame|654 x 57
  6237. RFLOMICS::ecoseed.df
    Ecoseed project data
    json| rda| rds
    list
  6238. RFLOMICS::ecoseed.mae
    Ecoseed project data
    rda| rds
    MultiAssayExperiment
  6239. rfPred::example_GRanges
    Toy example of GRanges object
    rda| rds
    GRanges
  6240. rfPred::variant_list_Y
    Toy example of data.frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 5
  6241. RGSEA::cmap
    Data from Connectivity map build 01
    csv| json| rda| rds
    matrix|22268 x 6
  6242. RGSEA::e1
    Data from GDS4102
    csv| json| rda| rds
    matrix|54675 x 2
  6243. RGSEA::e2
    Data from GDS4100
    csv| json| rda| rds
    matrix|54675 x 4
  6244. rgsepd::IlluminaBodymap
    Sample RNA-Seq Counts data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37653 x 16
  6245. rgsepd::IlluminaBodymapMeta
    Metadata table for the included sample data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 3
  6246. rheumaticConditionWOLLBOLD::wollbold
    Gene expression, annotations and clinical data from Wollbold et al. 2009
    rda| rds
    ExpressionSet
  6247. rhinotypeR::rhinovirusPrototypesVP4
    Rhinovirus VP4/2 prototype references (DNAStringSet)
    rda| rds
    DNAStringSet
  6248. rhinotypeR::rhinovirusVP4
    Example VP4/2 alignment (DNAStringSet)
    rda| rds
    DNAStringSet
  6249. RiboDiPA::data.binned
    An example of binned P-sites data
    json| rda| rds
    list
  6250. RiboDiPA::data.psite
    An example of P-site coverage data
    json| rda| rds
    list
  6251. RiboDiPA::result.exon
    An example of exon-level differential pattern analysis result
    json| rda| rds
    list
  6252. RiboDiPA::result.pst
    An example of differential pattern analysis result
    json| rda| rds
    list
  6253. rifi::example_input_e_coli
    An example SummarizedExperiment from E. coli An example SummarizedExperiment from RNA-seq containing information about the intensities at all time points (assay). Seqnames, IRanges and strand columns (rowRanges)and colData with time point series and replicates.
    rda| rds
    RangedSummarizedExperiment
  6254. rifi::example_input_minimal
    An artificial example SummarizedExperiment An example SummarizedExperiment containing information about the intensities at all time points (assay). Seqnames, IRanges and strand columns (rowRanges) and colData with time point series and replicates.
    rda| rds
    RangedSummarizedExperiment
  6255. rifi::example_input_synechocystis_6803
    An example input data frame from Synechocystis PCC 6803 A SummarizedExperiment from microarrays data containing information about the intensities at all time points (assay), Seqnames, IRanges and strand columns (rowRanges) and colData with time point series and averaged replicates.
    rda| rds
    RangedSummarizedExperiment
  6256. rifi::fit_e_coli
    The result of rifi_fit for E.coli example data A SummarizedExperiment containing the output from rifi_fit as an extension of rowRanges and metadata.
    rda| rds
    RangedSummarizedExperiment
  6257. rifi::fit_minimal
    The artificial result of rifi_fit for artificial example data A SummarizedExperiment containing the output from rifi_fit.
    rda| rds
    RangedSummarizedExperiment
  6258. rifi::fit_synechocystis_6803
    The result of rifi_fit for Synechocystis 6803 example data A SummarizedExperiment containing the output from rifi_fit as an extension of rowRanges and metadata.
    rda| rds
    RangedSummarizedExperiment
  6259. rifi::fragmentation_e_coli
    The result of rifi_fragmentation for E.coli example data A SummarizedExperiment containing the output from rifi_fragmentation as an extension of rowRanges
    rda| rds
    RangedSummarizedExperiment
  6260. rifi::fragmentation_minimal
    The result of rifi_fragmentation for artificial example data A SummarizedExperiment containing the output from rifi_fragmentation as an extension of rowRanges and metadata.
    rda| rds
    RangedSummarizedExperiment
  6261. rifi::fragmentation_synechocystis_6803
    The result of rifi_fragmentation for Synechocystis 6803 example data A SummarizedExperiment containing the output from rifi_fragmentation as an extension fo rowRanges
    rda| rds
    RangedSummarizedExperiment
  6262. rifi::penalties_e_coli
    The result of rifi_penalties for E.coli example data. A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata.
    rda| rds
    RangedSummarizedExperiment
  6263. rifi::penalties_minimal
    The result of rifi_penalties for artificial example data A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata.
    rda| rds
    RangedSummarizedExperiment
  6264. rifi::penalties_synechocystis_6803
    The result of rifi_penalties for Synechocystis 6803 example data. A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata.
    rda| rds
    RangedSummarizedExperiment
  6265. rifi::preprocess_e_coli
    The result of rifi_preprocess for E.coli example data A SummarizedExperiment containing the output from rifi_penalties including the logbook and the four penalty objects as metadata. A list containing the output from rifi_preprocess, including the inp and the modified input_df.
    rda| rds
    RangedSummarizedExperiment
  6266. rifi::preprocess_minimal
    The result of rifi_preprocess for artificial example data A SummarizedExperiment containing the output from rifi_preprocess
    rda| rds
    RangedSummarizedExperiment
  6267. rifi::preprocess_synechocystis_6803
    The result of rifi_preprocess for Synechocystis 6803 example data is a A SummarizedExperiment containing the output of rifi_preprocess as an extention to rowRanges
    rda| rds
    RangedSummarizedExperiment
  6268. rifi::res_minimal
    The result of event_dataframe for E.coli artificial example. A data frame combining the processed genome annotation and a SummarizedExperiment data from rifi_stats. The dataframe is
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 29
  6269. rifi::stats_e_coli
    The result of rifi_stats for E.coli example data A SummarizedExperiment containing the output from rifi_stats
    rda| rds
    RangedSummarizedExperiment
  6270. rifi::stats_minimal
    The result of rifi_stats for artificial example data A SummarizedExperiment containing the output of rifi_stats as an extention to rowRanges and metadata (gff file processed, see gff file documentation)
    rda| rds
    RangedSummarizedExperiment
  6271. rifi::stats_synechocystis_6803
    The result of rifi_stats for Synechocystis 6803 example data A SummarizedExperiment containing the output of rifi_stats as an extention to rowRanges
    rda| rds
    RangedSummarizedExperiment
  6272. rifi::summary_e_coli
    The result of rifi_summary for E.coli example data A SummarizedExperiment containing the output of rifi_stats as an extention to rowRanges
    rda| rds
    RangedSummarizedExperiment
  6273. rifi::summary_minimal
    The result of rifi_summary for artificial example data A SummarizedExperiment with the output from rifi_summary as metadata
    rda| rds
    RangedSummarizedExperiment
  6274. rifi::summary_synechocystis_6803
    The result of rifi_summary for Synechocystis 6803 example data A list containing the output from rifi_summary, including the fragment based data frame, bin based data frame, event data frame and the TI dataframe.
    rda| rds
    RangedSummarizedExperiment
  6275. rifi::wrapper_e_coli
    The result of rifi_wrapper for E.coli example data A list of SummarizedExperiment containing the output of rifi_wrapper. The list contains 6 elements of SummarizedExperiment output of rifi_preprocess, rifi_fit, rifi_penalties, rifi_fragmentation, rifi_stats and rifi_summary. The plot is generated from rifi_visualization. for more detail, please refer to each function separately.
    rda| rds
    list
  6276. rifi::wrapper_minimal
    The result of rifi_wrapper for E.coli artificial example. A list of SummarizedExperiment containing the output of rifi_wrapper. The list contains 6 elements of SummarizedExperiment output of rifi_preprocess, rifi_fit, rifi_penalties, rifi_fragmentation, rifi_stats and rifi_summary. The plot is generated from rifi_visualization. for more detail, please refer to each function separately.
    rda| rds
    list
  6277. rifi::wrapper_summary_synechocystis_6803
    The result of rifi_wrapper for summary_synechocystis_6803 example data A list of SummarizedExperiment containing the output of rifi_wrapper. The list contains 6 elements of SummarizedExperiment output of rifi_preprocess, rifi_fit, rifi_penalties, rifi_fragmentation, rifi_stats and rifi_summary. The plot is generated from rifi_visualization. for more detail, please refer to each function separately.
    rda| rds
    list
  6278. rifiComparative::annot_g
    The result of gff3_preprocessing of gff3 file A list containing all necessary information from a gff file for adjusting_HLToInt and visualization.
    rda| rds
    list
  6279. rifiComparative::data_combined_minimal
    The result of joining_by_row for inp_s and inp_f example data A data frame containing the output of joining_by_row as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 49
  6280. rifiComparative::df_comb_minimal
    The result of joining_by_column for data_combined_minimal example data A data frame containing the output of joining_by_row as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 18
  6281. rifiComparative::df_mean_minimal
    The result of adjusting_HLToInt for stats_df_comb_minimal and annotation example data A data frame containing the output of adjusting_HLToInt as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52 x 15
  6282. rifiComparative::differential_expression
    An example data frame from Synechosystis PCC 6803 differential probes expression obtained from limma package and only interesting variables were selected. The data frame was used entirely.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55508 x 4
  6283. rifiComparative::fragment_int
    The result of fragmentation for df_comb_minimal example data A data frame containing the output of fragmentation as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 24
  6284. rifiComparative::inp_f
    The result of loading_fun for stats_se_cdt2 example data Two data frame containing the output of loading_fun as second element of a list.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 49
  6285. rifiComparative::inp_s
    The result of loading_fun for stats_se_cdt1 example data Two data frame containing the output of loading_fun as first element of a list.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 49
  6286. rifiComparative::pen_HL
    The result of penalties for df_comb_minimal example data. A list containing the output from penalties including the logbook and two penalty objects.
    json| rda| rds
    list
  6287. rifiComparative::pen_int
    The result of penalties for df_comb_minimal example data. A list containing the output from penalties including the logbook and two penalty objects.
    json| rda| rds
    list
  6288. rifiComparative::penalties_df
    The result of penalties for df_comb_minimal example data A data frame containing the output of penalties as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 20
  6289. rifiComparative::stats_df_comb_minimal
    The result of statistics for fragment_int example data A data frame containing the output of statistics as a data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 26
  6290. rifiComparative::stats_se_cdt1
    An example SummarizedExperiment from Synechosystis PCC 6803 first condition obtained from rifi_statistics and used as input for rifiComparative
    rda| rds
    RangedSummarizedExperiment
  6291. rifiComparative::stats_se_cdt2
    An example SummarizedExperiment from Synechosystis PCC 6803 second condition obtained from rifi_statistics and used as input for rifiComparative
    rda| rds
    RangedSummarizedExperiment
  6292. RITAN::vac1.day0vs31.de.genes
    This dataset is included as an example in the package:
    json| rda| rds
    character
  6293. RITAN::vac1.day0vs56.de.genes
    This dataset is included as an example in the package:
    json| rda| rds
    character
  6294. RITAN::vac2.day0vs31.de.genes
    This dataset is included as an example in the package:
    json| rda| rds
    character
  6295. RITAN::vac2.day0vs56.de.genes
    This dataset is included as an example in the package:
    json| rda| rds
    character
  6296. RITANdata::cached_coding_genes
    cached_coding_genes.RData
    json| rda| rds
    character
  6297. RITANdata::geneset_list
    geneset_list.RData
    json| rda| rds
    list
  6298. RITANdata::network_list
    network_list.RData
    json| rda| rds
    list
  6299. RJMCMCNucleosomes::reads_demo_01
    Forward reads and reverse reads in 'GRanges' format (for demo purpose).
    rda| rds
    GRanges
  6300. RJMCMCNucleosomes::reads_demo_02
    Forward reads and reverse reads in 'GRanges' format (for demo purpose).
    rda| rds
    GRanges
  6301. RJMCMCNucleosomes::RJMCMC_result
    Nucleosomes obtained by running RJMCMC function using reads from reads_demo_02 dataset (for demo purpose).
    rda| rds
    rjmcmcNucleosomes
  6302. RJMCMCNucleosomes::syntheticNucleosomeReads
    Simulated dataset of reads generated by 'nucleoSim' package (for demo purpose).
    rda| rds
    syntheticNucReads
  6303. RLassoCox::dGMMirGraph
    The KEGG network
    rda| rds
    igraph
  6304. RLassoCox::mRNA_matrix
    The expression data
    csv| json| rda| rds
    matrix|314 x 670
  6305. RLassoCox::survData
    Survival data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|314 x 2
  6306. Rmagpie::vV70genes
    vV70genes: van't Veer et al. 70 best genes in an object of class dataset.
    rda| rds
    ExpressionSet
  6307. RmzTabM::se
    Quantified LC-MS preprocessing result test data from Metabonaut
    rda| rds
    SummarizedExperiment
  6308. RNAAgeCalc::fpkm
    An example of FPKM data
    csv| json| rda| rds
    matrix|24989 x 2
  6309. RNAAgeCalc::rawcount
    An example of RNASeq counts data
    csv| json| rda| rds
    matrix|24989 x 2
  6310. RNAdecay::decay_data
    Normalized RNA abundance RNA decay timecourse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15104 x 5
  6311. RNAdecay::models
    Example double exponential decay modeling results
    json| rda| rds
    list
  6312. RNAdecay::results
    Example double exponential decay modeling results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|118 x 21
  6313. RNAdecay::RPMs
    RNA abundance reads per million over RNA decay timecourse
    csv| xlsx| json| ndjson| rda| rds
    data.frame|118 x 128
  6314. rnaEditr::rnaedit_df
    Example breast cancer RNA editing dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|272 x 221
  6315. rnaEditr::t_rnaedit_df
    Transposed breast cancer example dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 20
  6316. RNAmodR::csd
    Example data in the RNAmodR package
    rda| rds
    CoverageSequenceData
  6317. RNAmodR::e3sd
    Example data in the RNAmodR package
    rda| rds
    End3SequenceData
  6318. RNAmodR::e5sd
    Example data in the RNAmodR package
    rda| rds
    End5SequenceData
  6319. RNAmodR::esd
    Example data in the RNAmodR package
    rda| rds
    EndSequenceData
  6320. RNAmodR::msi
    Example data in the RNAmodR package
    rda| rds
    ModSetInosine
  6321. RNAmodR::ne3sd
    Example data in the RNAmodR package
    rda| rds
    NormEnd3SequenceData
  6322. RNAmodR::ne5sd
    Example data in the RNAmodR package
    rda| rds
    NormEnd5SequenceData
  6323. RNAmodR::pesd
    Example data in the RNAmodR package
    rda| rds
    ProtectedEndSequenceData
  6324. RNAmodR::psd
    Example data in the RNAmodR package
    rda| rds
    PileupSequenceData
  6325. RNAmodR::sdl
    Example data in the RNAmodR package
    rda| rds
    SequenceDataList
  6326. RNAmodR::sds
    Example data in the RNAmodR package
    rda| rds
    SequenceDataSet
  6327. RNAmodR.AlkAnilineSeq::msaas
    Example data in the RNAmodR.AlkAnilineSeq package
    rda| rds
    ModSetAlkAnilineSeq
  6328. RNAmodR.ML::dmod
    Example data in the RNAmodR.ML package
    rda| rds
    GRanges
  6329. RNAmodR.ML::me
    Example data in the RNAmodR.ML package
    rda| rds
    ModMLExample
  6330. RNAmodR.ML::mod7
    Example data in the RNAmodR.ML package
    rda| rds
    GRanges
  6331. RNAmodR.ML::model
    Example data in the RNAmodR.ML package
    rda| rds
    ranger
  6332. RNAmodR.RiboMethSeq::msrms
    Example data in the RNAmodR.RiboMethSeq package
    rda| rds
    ModSetRiboMethSeq
  6333. RNAsense::MZsox
    Time resolved RNA seq data for early zygotic development of zebra fish.
    rda| rds
    SummarizedExperiment
  6334. rnaseqcomp::simdata
    Example of Quantifications on Simulation Data
    rda| rds
    list
  6335. RNAseqCovarImpute::example_data
    Simulated dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 5
  6336. RNAseqCovarImpute::example_DGE
    Simulated counts in DGE list
    json| rda| rds
    DGEList
  6337. rnaseqDTU::cts
    Estimated Salmon counts (6 vs 6)
    csv| json| rda| rds
    matrix|78164 x 12
  6338. rnaseqDTU::dge.genes
    Genes with differential gene expression
    json| rda| rds
    character
  6339. rnaseqDTU::disps
    Transcript-level dispersion parameter
    json| rda| rds
    numeric
  6340. rnaseqDTU::dte.genes
    Genes with differential transcript expression
    json| rda| rds
    character
  6341. rnaseqDTU::dtu.genes
    Genes with differential transcript usage
    json| rda| rds
    character
  6342. rnaseqDTU::dxr
    DEXSeq transcript-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20711 x 3
  6343. rnaseqDTU::dxr.g
    DEXSeq gene-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7764 x 2
  6344. rnaseqDTU::fold_changes
    Simulation fold changes
    csv| json| rda| rds
    matrix|47185 x 0
  6345. rnaseqDTU::frag_GC_bias
    Fragment GC bias
    csv| json| rda| rds
    matrix|101 x 15
  6346. rnaseqDTU::iso.dge
    Isoforms in the genes with DGE
    json| rda| rds
    logical
  6347. rnaseqDTU::iso.dte
    Isoforms with DTE
    json| rda| rds
    logical
  6348. rnaseqDTU::iso.dte.only
    Isoforms with DTE and not DTU
    json| rda| rds
    logical
  6349. rnaseqDTU::iso.dtu
    Isoforms with DTU
    json| rda| rds
    logical
  6350. rnaseqDTU::res
    DRIMSeq gene-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7764 x 5
  6351. rnaseqDTU::res.txp
    DRIMSeq transcript-level results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20711 x 6
  6352. rnaseqDTU::sim_counts
    Simulated counts for group 1
    json| rda| rds
    numeric
  6353. rnaseqDTU::sim.counts.mat
    Simulated counts
    csv| json| rda| rds
    matrix|47185 x 0
  6354. rnaseqDTU::tpms
    Simulated abundances
    csv| json| rda| rds
    matrix|203027 x 0
  6355. rnaseqDTU::txdf
    Transcript-to-gene data.frame
    csv| xlsx| rda| rds
    data.frame|203027 x 3
  6356. rnaseqDTU::txi.g
    Gene-level tximport object
    json| rda| rds
    list
  6357. RnaSeqSampleSizeData::TCGA_BLCA
    Read counts and dispersion distribution for genes in TCGA BLCA data.
    csv| json| rda| rds
    DGEList
  6358. RnaSeqSampleSizeData::TCGA_BRCA
    Read counts and dispersion distribution for genes in TCGA BRCA data.
    csv| json| rda| rds
    DGEList
  6359. RnaSeqSampleSizeData::TCGA_CESC
    Read counts and dispersion distribution for genes in TCGA CESC data.
    csv| json| rda| rds
    DGEList
  6360. RnaSeqSampleSizeData::TCGA_COAD
    Read counts and dispersion distribution for genes in TCGA COAD data.
    csv| json| rda| rds
    DGEList
  6361. RnaSeqSampleSizeData::TCGA_HNSC
    Read counts and dispersion distribution for genes in TCGA HNSC data.
    csv| json| rda| rds
    DGEList
  6362. RnaSeqSampleSizeData::TCGA_KIRC
    Read counts and dispersion distribution for genes in TCGA KIRC data.
    csv| json| rda| rds
    DGEList
  6363. RnaSeqSampleSizeData::TCGA_LGG
    Read counts and dispersion distribution for genes in TCGA LGG data.
    csv| json| rda| rds
    DGEList
  6364. RnaSeqSampleSizeData::TCGA_LUAD
    Read counts and dispersion distribution for genes in TCGA LUAD data.
    csv| json| rda| rds
    DGEList
  6365. RnaSeqSampleSizeData::TCGA_LUSC
    Read counts and dispersion distribution for genes in TCGA LUSC data.
    csv| json| rda| rds
    DGEList
  6366. RnaSeqSampleSizeData::TCGA_PRAD
    Read counts and dispersion distribution for genes in TCGA PRAD data.
    csv| json| rda| rds
    DGEList
  6367. RnaSeqSampleSizeData::TCGA_READ
    Read counts and dispersion distribution for genes in TCGA READ data.
    csv| json| rda| rds
    DGEList
  6368. RnaSeqSampleSizeData::TCGA_THCA
    Read counts and dispersion distribution for genes in TCGA THCA data.
    csv| json| rda| rds
    DGEList
  6369. RnaSeqSampleSizeData::TCGA_UCEC
    Read counts and dispersion distribution for genes in TCGA UCEC data.
    csv| json| rda| rds
    DGEList
  6370. RNAshapeQC::TOY_mrna_mat
    Toy mRNA-seq-like dataset for RNAshapeQC (matrix input)
    json| rda| rds
    list
  6371. RNAshapeQC::TOY_mrna_se
    Toy mRNA-seq-like dataset for RNAshapeQC (SE input)
    rda| rds
    SummarizedExperiment
  6372. RNAshapeQC::TOY_total_mat
    Toy total RNA-seq-like dataset for RNAshapeQC (matrix input)
    json| rda| rds
    list
  6373. RNAshapeQC::TOY_total_se
    Toy total RNA-seq-like dataset for RNAshapeQC (SE input)
    rda| rds
    SummarizedExperiment
  6374. RnBeads::epic_v1_manifest
    XenoMix EPICv1 (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|142137 x 5
  6375. RnBeads::epic_v2_manifest
    XenoMix EPICv2 (hg38)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|126967 x 8
  6376. RnBeads::interspecies_probes_v1
    XenoMix interspeciesprobes (v1)
    json| rda| rds
    character
  6377. RnBeads::interspecies_probes_v2
    XenoMix interspeciesprobes (v2)
    json| rda| rds
    character
  6378. RnBeads::lump.hg19
    LUMP Support
    json| rda| rds
    list
  6379. RnBeads::lump.hg38
    LUMP Support (hg38)
    csv| json| rda| rds
    list
  6380. RnBeads.hg19::hg19
    HG19 - Annotation tables
    json| rda| rds
    list
  6381. RnBeads.hg19::regions
    Names of the regions
    rda| rds
    list
  6382. RnBeads.hg19::rnb.set.example
    Example Data Set
    rda| rds
    RnBeadRawSet
  6383. RnBeads.hg19::sites
    Names of the sites
    rda| rds
    list
  6384. RnBeads.hg19::sites
    Names of the sites
    rda| rds
    list
  6385. RnBeads.hg19::sites
    Names of the sites
    rda| rds
    list
  6386. RnBeads.hg19::sites
    Names of the sites
    rda| rds
    list
  6387. RnBeads.hg38::hg38
    Annotation tables for hg38
    json| rda| rds
    list
  6388. RnBeads.hg38::regions
    Annotation tables for hg38
    rda| rds
    list
  6389. RnBeads.hg38::sites
    Annotation tables for hg38
    rda| rds
    list
  6390. RnBeads.hg38::sites
    Annotation tables for hg38
    rda| rds
    list
  6391. RnBeads.hg38::sites
    Annotation tables for hg38
    rda| rds
    list
  6392. RnBeads.hg38::sites
    Annotation tables for hg38
    rda| rds
    list
  6393. RnBeads.hg38::sites
    Annotation tables for hg38
    rda| rds
    list
  6394. RnBeads.mm10::mm10
    Annotation tables for mm10
    json| rda| rds
    list
  6395. RnBeads.mm10::regions
    Annotation tables for mm10
    rda| rds
    list
  6396. RnBeads.mm10::sites
    Annotation tables for mm10
    rda| rds
    list
  6397. RnBeads.mm9::mm9
    Annotation tables for mm9
    json| rda| rds
    list
  6398. RnBeads.mm9::regions
    Annotation tables for mm9
    rda| rds
    list
  6399. RnBeads.mm9::sites
    Annotation tables for mm9
    rda| rds
    list
  6400. RnBeads.rn5::regions
    Annotation tables for rn5
    rda| rds
    list
  6401. RnBeads.rn5::rn5
    Annotation tables for rn5
    json| rda| rds
    list
  6402. RnBeads.rn5::sites
    Annotation tables for rn5
    rda| rds
    list
  6403. Rnits::yeastchemostat
    Yeast chemostat data from Ronen and Botstein (Proc Natl Acad Sci U S A. 2006 Jan 10;103(2):389-94. Epub 2005 Dec 28.)
    rda| rds
    ExpressionSet
  6404. roastgsa::dragtable
    dragtable for html writings
    json| rda| rds
    character
  6405. roastgsa::expr.tcga
    Tumor Bladder TCGA data
    csv| json| rda| rds
    matrix|3621 x 38
  6406. roastgsa::fd.tcga
    Tumor Bladder TCGA data
    rda| rds
    DFrame
  6407. roastgsa::hallmarks.hs
    Hallmarks homo sapiens gene symbol
    json| rda| rds
    list
  6408. roastgsa::kegg.hs
    KEGG genesets homo sapiens entrez
    json| rda| rds
    list
  6409. roastgsa::pd.tcga
    Tumor Bladder TCGA data
    rda| rds
    DFrame
  6410. roastgsa::sorttable
    sorttable for html writings
    json| rda| rds
    character
  6411. RolDE::data1
    A proteomics dataset with random protein expression values - no missing values.
    csv| json| rda| rds
    matrix|1045 x 30
  6412. RolDE::data2
    A small dataset with 50 proteins and 30 samples for the example usage of RolDE
    csv| json| rda| rds
    matrix|50 x 30
  6413. RolDE::data3
    A semi-simulated UPS1 spike-in dataset with differences in longitudinal expression for the spike-in proteins - no missing values.
    csv| json| rda| rds
    matrix|1033 x 30
  6414. RolDE::des_matrix1
    A RolDE design matrix for data1
    csv| json| rda| rds
    matrix|30 x 4
  6415. RolDE::des_matrix2
    A RolDE design matrix for data2
    csv| json| rda| rds
    matrix|30 x 4
  6416. RolDE::des_matrix3
    A RolDE design matrix for data3
    csv| json| rda| rds
    matrix|30 x 4
  6417. RolDE::res1
    RolDE results for data1
    json| rda| rds
    list
  6418. RolDE::res3
    RolDE results for data3
    json| rda| rds
    list
  6419. ropls::aminoacids
    Amino-Acids Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19 x 9
  6420. ropls::cellulose
    NIR-Viscosity example data set to illustrate multivariate calibration using PLS, spectral filtering and OPLS
    json| rda| rds
    list
  6421. ropls::cornell
    Octane of various blends of gasoline
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 9
  6422. ropls::foods
    Food consumption patterns accross European countries (FOODS)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 21
  6423. ropls::linnerud
    Linnerud Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 7
  6424. ropls::lowarp
    A multi response optimization data set (LOWARP)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 19
  6425. ropls::mark
    'mark' Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9 x 5
  6426. ropls::NCI60
    Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms
    rda| rds
    list
  6427. ropls::sacurine
    Analysis of the human adult urinary metabolome variations with age, body mass index and gender
    rda| rds
    list
  6428. ROSeq::L_Tung_single
    Single cell samples for DE genes analysis
    json| rda| rds
    list
  6429. ROTS::affySpikeIn
    Gene expression data from the Affymetrix spike-in experiment
    csv| json| rda| rds
    matrix|1000 x 10
  6430. ROTS::affySpikeIn.gnames
    Gene expression data from the Affymetrix spike-in experiment
    json| rda| rds
    character
  6431. ROTS::affySpikeIn.L
    Gene expression data from the Affymetrix spike-in experiment
    json| rda| rds
    numeric
  6432. ROTS::spikedgene
    Gene expression data from the Affymetrix spike-in experiment
    json| rda| rds
    integer
  6433. ROTS::upsSpikeIn
    Protein expression data from the CPTAC Technology Assessment (Study 6)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|736 x 6
  6434. rprimer::exampleRprimerAlignment
    Example datasets
    rda| rds
    DNAMultipleAlignment
  6435. rprimer::exampleRprimerAssay
    Example datasets
    rda| rds
    RprimerAssay
  6436. rprimer::exampleRprimerMatchAssay
    Example datasets
    rda| rds
    RprimerMatchAssay
  6437. rprimer::exampleRprimerMatchOligo
    Example datasets
    rda| rds
    RprimerMatchOligo
  6438. rprimer::exampleRprimerOligo
    Example datasets
    rda| rds
    RprimerOligo
  6439. rprimer::exampleRprimerProfile
    Example datasets
    rda| rds
    RprimerProfile
  6440. RRBSdata::diffMethCpGs
    The differentially methylated CpG sites.
    rda| rds
    GRanges
  6441. RRBSdata::islands
    CpG islands with information on DMRs.
    rda| rds
    GRanges
  6442. RRBSdata::rrbs
    An RRBS data set with 12 samples and 10,000 simulated DMRs.
    rda| rds
    BSraw
  6443. RRHO::HNP
    RRHO comparison data sets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15144 x 2
  6444. RRHO::My
    RRHO comparison data sets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15144 x 2
  6445. RRHO::Sestan
    RRHO comparison data sets.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15144 x 2
  6446. rsemmed::g_mini
    Example data for the rsemmed package
    rda| rds
    igraph
  6447. rsemmed::g_small
    Example data for the rsemmed package
    rda| rds
    igraph
  6448. RSVSim::segDups
    Segmental duplications
    rda| rds
    GRanges
  6449. RSVSim::weightsMechanisms
    Weights for SV formation mechanisms
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 5
  6450. RSVSim::weightsRepeats
    Weights for repeat region bias
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 5
  6451. RTCGAToolbox::accmini
    A subset of the Adrenocortical Carcinoma (ACC) dataset
    rda| rds
    FirehoseData
  6452. RTN::pksData
    Pre-processed datasets for the RTN package.
    csv| json| rda| rds
    list
  6453. RTN::stni
    A pre-processed TNI for demonstration purposes only.
    rda| rds
    TNI
  6454. RTN::tfsData
    Pre-processed datasets for the RTN package.
    csv| json| rda| rds
    list
  6455. RTN::tnaData
    Pre-processed datasets for the RTN package.
    json| rda| rds
    list
  6456. RTN::tniData
    Pre-processed datasets for the RTN package.
    json| rda| rds
    list
  6457. RTNsurvival::survival.data
    A pre-processed dataset for demonstration purposes only.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 19
  6458. RTopper::dat
    A test dataset for the RTopper package
    csv| json| rda| rds
    list
  6459. RTopper::fgsList
    A list of Functional Gene Set (FGS) to be used to run the examples in the RTopper package
    csv| json| rda| rds
    list
  6460. RTopper::gseResultsSep
    A list of separated gene set enrichment p-values to be used to run the examples in the RTopper package
    csv| json| rda| rds
    list
  6461. RTopper::intScores
    A list of genomic scores integrated across distinct data sets to be used to run the examples in the RTopper package
    csv| json| rda| rds
    list
  6462. RTopper::pheno
    A test dataset for the RTopper package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|95 x 2
  6463. RTopper::sepScores
    A list of separate gene-to-phenotype association scores, obtained indipendently for each distinct data set to be used to run the examples in the RTopper package
    csv| json| rda| rds
    list
  6464. Rtpca::ori_et_al_complex_ppis
    Data frame of eukaryotic protein-protein interactions inferred from annotated protein complexes by Ori et al. and StringDB interations with a combined score of at least 900
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|8953 x 5
  6465. Rtpca::ori_et_al_complexes_df
    Data frame of annotated protein complexes by Ori et al.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|2597 x 3
  6466. Rtpca::string_ppi_df
    Data frame of annotated human protein-protein interactions retrieved from stringDB with a combined interaction score equal or higher than 700
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|252558 x 4
  6467. rtracklayer::cpneTrack
    CPNE1 SNP track
    rda| rds
    GRanges
  6468. rtracklayer::targets
    microRNA target sites
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2981 x 6
  6469. rTRM::biogrid_hs
    Network dataset of class 'igraph'
    rda| rds
    igraph
  6470. rTRM::biogrid_mm
    Network dataset of class 'igraph'
    rda| rds
    igraph
  6471. RUCova::HNSCC_data
    HNSCC data set
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|8000 x 56
  6472. RUCova::sce
    SingleCellExperiment Object with HNSCC Data Set
    rda| rds
    SingleCellExperiment
  6473. RUVnormalizeData::gender
    Gene expression matrix and sample annotation of the Vawter et al., 2004 study.
    rda| rds
    ExpressionSet
  6474. RVS::ex.ped.mat
    matrix of pedigree information and genotype data from famVCF stored in the LINKAGE format
    csv| json| rda| rds
    matrix|32 x 0
  6475. RVS::fam15157.vcf
    VCF objects containing genotype data for two families: fam15157 and fam28003 (corresponding to the secondCousinTriple and firstAndSecondCousinsTriple families in samplePedigrees)
    rda| rds
    CollapsedVCF
  6476. RVS::fam28003.vcf
    VCF objects containing genotype data for two families: fam15157 and fam28003 (corresponding to the secondCousinTriple and firstAndSecondCousinsTriple families in samplePedigrees)
    rda| rds
    CollapsedVCF
  6477. RVS::samplePedigrees
    list of 8 sample pedigree objects
    rda| rds
    list
  6478. RVS::snpMat
    SnpMatrix with genotype information from famVCF for fam15157
    rda| rds
    SnpMatrix|17 x 179
  6479. safe::p53.stat
    p53 Mutation Status
    csv| xlsx| json| ndjson| rda| rds
    data.frame|251 x 2
  6480. sagenhaft::SAGEartifacts
    Functions for SAGE library extraction
    csv| xlsx| json| ndjson| rda| rds
    data.frame|329 x 2
  6481. sampleClassifierData::se_micro_refmat
    microarray gene expression data set
    rda| rds
    SummarizedExperiment
  6482. sampleClassifierData::se_micro_testmat
    microarray gene expression data set
    rda| rds
    SummarizedExperiment
  6483. sampleClassifierData::se_rnaseq_refmat
    RNA-seq gene expression data set
    rda| rds
    SummarizedExperiment
  6484. sampleClassifierData::se_rnaseq_testmat
    RNA-seq gene expression data set
    rda| rds
    SummarizedExperiment
  6485. sangeranalyseR::qualityReportData
    QualityReport instance
    rda| rds
    QualityReport
  6486. sangeranalyseR::sangerAlignmentData
    SangerAlignment instance
    rda| rds
    SangerAlignment
  6487. sangeranalyseR::sangerContigData
    SangerContig instance
    rda| rds
    SangerContig
  6488. sangeranalyseR::sangerReadFData
    SangerRead instance
    rda| rds
    SangerRead
  6489. SANTA::edgelist.humannet
    Pre-processed dataset for the SANTA vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|58636 x 3
  6490. SANTA::edgelist.intact
    Pre-processed dataset for the SANTA vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21291 x 2
  6491. SANTA::g.bandyopadhyay.treated
    Pre-processed dataset for the SANTA vignette
    rda| rds
    igraph
  6492. SANTA::g.bandyopadhyay.untreated
    Pre-processed dataset for the SANTA vignette
    rda| rds
    igraph
  6493. SANTA::g.costanzo.cor
    Pre-processed dataset for the SANTA vignette
    rda| rds
    igraph
  6494. SANTA::g.costanzo.raw
    Pre-processed dataset for the SANTA vignette
    rda| rds
    igraph
  6495. SANTA::g.srivas.high
    Pre-processed dataset for the SANTA vignette
    rda| rds
    igraph
  6496. SANTA::g.srivas.untreated
    Pre-processed dataset for the SANTA vignette
    rda| rds
    igraph
  6497. SANTA::go.entrez
    Pre-processed dataset for the SANTA vignette
    json| rda| rds
    character
  6498. SANTA::rnai.cheung
    Pre-processed dataset for the SANTA vignette
    csv| json| rda| rds
    matrix|10690 x 6
  6499. sarks::simulatedScores
    Scores associated with simulated sequences from SArKS paper.
    json| rda| rds
    integer
  6500. sarks::simulatedSeqs
    Simulated sequences from SArKS paper.
    json| rda| rds
    character
  6501. saseR::ASpliSE
    ASpliSE
    rda| rds
    SummarizedExperiment
  6502. saseR::features
    features
    rda| rds
    ASpliFeatures
  6503. saseR::SEbins
    SEbins
    rda| rds
    SummarizedExperiment
  6504. saseR::SEgenes
    SEgenes
    rda| rds
    SummarizedExperiment
  6505. saseR::SEjunctions
    SEjunctions
    rda| rds
    SummarizedExperiment
  6506. satuRn::sumExp_example
    A 'SummarizedExperiment' derived from our case study which builds on the dataset of Tasic et al. It contains the same cells as the data object used in the vignette (see '?Tasic_counts_vignette' for more information). In this SummarizedExperiment, we performed a filtering with 'filterByExpr' of edgeR with more stringent than default parameter settings (min.count = 100,min.total.count = 200, large.n = 50, min.prop = 0.9) to reduced the number of retained transcripts. We used this object to create an executable example in the help files of satuRn.
    rda| rds
    SummarizedExperiment
  6507. satuRn::Tasic_counts_vignette
    A 'Matrix' with transcript-level counts derived from our case study which builds on the dataset of Tasic et al. We used Salmon (V1.1.0) to quantify all L5IT cells (both for ALM and VISp tissue) from mice with a normal eye condition. From these cells, we randomly sampled 20 cells of each of the following cell types to use for this vignette; L5_IT_VISp_Hsd11b1_Endou, L5_IT_ALM_Tmem163_Dmrtb1 and L5_IT_ALM_Tnc. The data has already been leniently filtered with the 'filterByExpr' function of edgeR.
    csv| json| rda| rds
    matrix|22273 x 60
  6508. satuRn::Tasic_metadata_vignette
    Metadata associated with the expression matrix 'Tasic_counts_vignette'. See '?Tasic_counts_vignette' for more information on the dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 3
  6509. SBGNview::mapped.ids
    IDs mappable by SBGNview
    json| rda| rds
    list
  6510. SBGNview::pathways.info
    Information of collected pathways
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5200 x 8
  6511. SBGNview::pathways.stats
    Number of pathways collected
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 3
  6512. SBGNview::SBGNhub.id.mapping.tables
    Mapping tables available in SBGNhub
    csv| json| rda| rds
    matrix|822 x 1
  6513. SBGNview.data::cancer.ds
    A demo microarray dataset from a cancer study
    rda| rds
    SummarizedExperiment
  6514. SBGNview.data::chebi_compound.name
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|285207 x 2
  6515. SBGNview.data::chebi_kegg
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20692 x 2
  6516. SBGNview.data::chebi_metacyc.SBGN
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|60659 x 2
  6517. SBGNview.data::chebi_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|79911 x 2
  6518. SBGNview.data::chebi_pathwayCommons
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|60425 x 2
  6519. SBGNview.data::compound.name_kegg
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|61143 x 2
  6520. SBGNview.data::compound.name_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|571283 x 2
  6521. SBGNview.data::compound.name_pathwayCommons
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|298727 x 2
  6522. SBGNview.data::ENZYME_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16601 x 2
  6523. SBGNview.data::hsa_ENTREZID_pathwayCommons
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|384671 x 2
  6524. SBGNview.data::hsa_KO_ENTREZID
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10446 x 3
  6525. SBGNview.data::hsa_pathwayCommons_ENSEMBL
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|383983 x 2
  6526. SBGNview.data::IFNg
    RNA-Seq result from a mouse IFNG knockout experiment
    rda| rds
    SummarizedExperiment
  6527. SBGNview.data::kegg_pathwayCommons
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6448 x 2
  6528. SBGNview.data::KO_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47719 x 2
  6529. SBGNview.data::KO_pathwayCommons
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|88148 x 2
  6530. SBGNview.data::mmu_KO_ENSEMBL
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|11016 x 2
  6531. SBGNview.data::mmu_KO_ENTREZID
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11105 x 3
  6532. SBGNview.data::mmu_pathwayCommons_ENSEMBL
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|619656 x 2
  6533. SBGNview.data::mmu_pathwayCommons_ENTREZID
    Mapping table between two types of IDs
    csv| json| rda| rds
    matrix|628413 x 2
  6534. SBGNview.data::pathway.completeness.cutoff.info
    Cutoffs of pathway completeness used for defining existance of pathway in a species
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3529 x 4
  6535. SBGNview.data::pathway.species.pct_Mapped
    Pathway completeness in a species
    csv| xlsx| rda| rds
    data.frame|6939443 x 5
  6536. SBGNview.data::pathwayCommons_SYMBOL
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|406940 x 3
  6537. SBGNview.data::sbgn.xmls
    XML code of a SBGN-ML file
    csv| json| rda| rds
    list
  6538. SBGNview.data::SYMBOL_pathway.id
    Mapping table between two types of IDs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|252730 x 2
  6539. SC3::ann
    Cell type annotations for data extracted from a publication by Yan et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 1
  6540. SC3::yan
    Single cell RNA-Seq data extracted from a publication by Yan et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20214 x 90
  6541. Scale4C::liverData
    Example 4C-seq data set of fetal liver data
    rda| rds
    Scale4C
  6542. Scale4C::liverDataVP
    Example 4C-seq data set of fetal liver data, with added VP
    rda| rds
    Scale4C
  6543. scanMiR::SampleKdModel
    Example KdModel (hsa-miR-155-5p)
    json| rda| rds
    KdModel
  6544. scanMiR::SampleTranscript
    Example transcript sequence
    json| rda| rds
    character
  6545. scanMiRData::hsa
    KdModelList for human miRNAs
    csv| json| rda| rds
    KdModelList
  6546. scanMiRData::mmu
    KdModelList for mouse miRNAs
    csv| json| rda| rds
    KdModelList
  6547. scanMiRData::rno
    KdModelList for rat miRNAs
    csv| json| rda| rds
    KdModelList
  6548. scAnnotatR::tirosh_mel80_example
    A Seurat Object Sample
    rda| rds
    Seurat
  6549. SCANVIS::GBM
    list of 3 TCGA glioblastoma samples, parts thereof, outputs of SCANVISscan and SCANVISlinkvar functions with toy variants supplied for the variant-SJ mapping
    json| rda| rds
    list
  6550. SCANVIS::gbm3
    part of a TCGA glioblastoma sample from STAR alignment SJ.tab file
    csv| json| rda| rds
    matrix|131 x 4
  6551. SCANVIS::gbm3.vcf
    a toy set of 6 variants that pair up with the gbm3 data example
    csv| json| rda| rds
    matrix|8 x 4
  6552. SCANVIS::gen19
    parts of the annotation object created by the SCANVISannotation function when used with the url ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_19/ which references the gencode v19 GTF file for human hg19
    json| rda| rds
    list
  6553. SCANVIS::LUAD
    list of 3 TCGA lung adenocarcinoma samples, parts thereof, outputs of SCANVISscan
    json| rda| rds
    list
  6554. SCANVIS::LUSC
    list of 3 TCGA lung squamous cell carcinoma samples, parts thereof, both outputs of SCANVISscan with the second sample being variant-mapped via SCANVISlinkvar
    json| rda| rds
    list
  6555. scatterHatch::pdacData
    Tissue-CyCIF data of Pancreatic Ductal Adenocarcinoma (PDAC)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158159 x 3
  6556. scBFA::celltype
    Cell types as labels of example scRNA-seq dataset(exprdata)
    json| rda| rds
    character
  6557. scBFA::celltype_toy
    toy cell type vector with 3 cell types generated for 5 cells in toy dataset
    json| rda| rds
    factor
  6558. scBFA::disperPlot
    Reference dataset(disperPlot)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|53198 x 4
  6559. scBFA::exprdata
    scRNA-seq dataset(exprdata)
    csv| json| rda| rds
    matrix|100 x 950
  6560. scBFA::zinb_toy
    example zinb object after fitting a toy dataset with 5 cells and 10 genes
    rda| rds
    ZinbModel
  6561. SCBN::orthgenes
    A real dataset of orthologous genes between the different species.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27821 x 9
  6562. SCBN::sim_data
    A simulation dataset of orthologous genes between the different species.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4143 x 4
  6563. scBubbletree::d_500
    Dataset: 500 PBMCs
    json| rda| rds
    list
  6564. scBubbletree::d_ccl
    Dataset: scRNA-seq data of 3,918 cells from 5 adenocarcinoma cell lines
    json| rda| rds
    list
  6565. scCB2::mbrainSub
    Subset of 1k Brain Cells from an E18 Mouse
    rda| rds
    dgCMatrix
  6566. scClassify::scClassify_example
    Example data used in scClassify package
    rda| rds
    list
  6567. scClassify::trainClassExample_wang
    Subset of pretrained model of Wang et al.
    rda| rds
    scClassifyTrainModel
  6568. scClassify::trainClassExample_xin
    Subset of pretrained model of Xin et al.
    rda| rds
    scClassifyTrainModel
  6569. sccomp::counts_obj
    counts_obj
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|720 x 6
  6570. sccomp::no_significance_df
    no_significance_df
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|34 x 4
  6571. sccomp::sce_obj
    sce_obj
    rda| rds
    SingleCellExperiment
  6572. sccomp::seurat_obj
    seurat_obj
    rda| rds
    Seurat
  6573. scDD::scDatEx
    Data: Toy example data
    rda| rds
    SingleCellExperiment
  6574. scDD::scDatExList
    Data: Toy example data list
    json| rda| rds
    list
  6575. scDD::scDatExSim
    Data: Toy example of simulated data
    rda| rds
    SingleCellExperiment
  6576. scDDboost::sim_dat
    scDDboost
    rda| rds
    SingleCellExperiment
  6577. scde::es.mef.small
    Sample data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14897 x 40
  6578. scde::knn
    Sample error model
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64 x 12
  6579. scde::o.ifm
    Sample error model
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 6
  6580. scde::pollen
    Sample data
    csv| json| rda| rds
    matrix|23710 x 64
  6581. scde::scde.edff
    Internal model data
    rda| rds
    gam
  6582. scDesign3::example_count
    A sparse matrix with example data
    rda| rds
    dgCMatrix
  6583. scDesign3::example_sce
    A SingleCellExperiment object containing both cell type and pseudotime
    rda| rds
    SingleCellExperiment
  6584. scDesign3::pseudotime
    A numeric vector of pseudotime values
    json| rda| rds
    numeric
  6585. scDiagnostics::covid_query_data
    COVID-19 PBMC Query (Severe COVID-19) Single-Cell RNA-Seq Dataset
    rda| rds
    SingleCellExperiment
  6586. scDiagnostics::covid_reference_data
    COVID-19 PBMC Reference (Healthy) Single-Cell RNA-Seq Dataset
    rda| rds
    SingleCellExperiment
  6587. scDiagnostics::merfish_query_data
    MERFISH Colitis Query (Day 9 Colitis) Spatial Dataset
    rda| rds
    SpatialExperiment
  6588. scDiagnostics::merfish_reference_data
    MERFISH Colitis Reference (Healthy) Spatial Dataset
    rda| rds
    SpatialExperiment
  6589. scDiagnostics::qc_data
    Quality Control Single-Cell RNA-Seq Dataset
    rda| rds
    SingleCellExperiment
  6590. scDiagnostics::query_data
    Query Single-Cell RNA-Seq Dataset
    rda| rds
    SingleCellExperiment
  6591. scDiagnostics::reference_data
    Reference Single-Cell RNA-Seq Dataset
    rda| rds
    SingleCellExperiment
  6592. scDiagnostics::zeisel_benchmark_results
    Zeisel Brain Anomaly Detection Benchmark Results
    json| rda| rds
    list
  6593. scDiagnostics::zeisel_query_data
    Zeisel Brain Query Single-Cell RNA-Seq Dataset
    rda| rds
    SingleCellExperiment
  6594. scDiagnostics::zeisel_reference_data
    Zeisel Brain Reference Single-Cell RNA-Seq Dataset
    rda| rds
    SingleCellExperiment
  6595. scds::sce_chcl
    Example single cell experiment ('SingleCellExperiment') object
    rda| rds
    SingleCellExperiment
  6596. scECODA::example_data
    Example Data for scECODA
    json| rda| rds
    list
  6597. SCFA::GBM
    GBM
    json| rda| rds
    list
  6598. scFeatureFilter::scData_hESC
    Expression data from 32 human embryonic stem cells
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|60468 x 33
  6599. scFeatures::example_scrnaseq
    Example of scRNA-seq data
    rda| rds
    Seurat
  6600. scFeatures::scfeatures_result
    Example of scFeatures() output
    csv| json| rda| rds
    list
  6601. scGPS::day_2_cardio_cell_sample
    One of the two example single-cell count matrices to be used for training 'scGPS' model
    json| rda| rds
    list
  6602. scGPS::day_5_cardio_cell_sample
    One of the two example single-cell count matrices to be used for 'scGPS' prediction
    json| rda| rds
    list
  6603. scGPS::training_gene_sample
    Input gene list for training 'scGPS', e.g. differentially expressed genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|158 x 1
  6604. scGraphVerse::toy_adj_matrix
    Toy adjacency matrix for examples
    csv| json| rda| rds
    matrix|35 x 35
  6605. scGraphVerse::toy_counts
    Toy MultiAssayExperiment for Network Inference
    rda| rds
    MultiAssayExperiment
  6606. scHiCcompare::ODC.bandnorm_chr20_1
    scHi-C data from oligodendrocyte (ODC) cell type - chromosome 20 at 1 MB resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|335 x 5
  6607. scHiCcompare::scHiC.table_MG_chr22
    scHi-C table from microglia (MG) cell type - chromosome 22 at 1 MB resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|666 x 14
  6608. scHiCcompare::scHiC.table_ODC_chr22
    scHi-C table from oligodendrocyte (ODC) cell type - chromosome 22 at 1 MB resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|666 x 14
  6609. scHOT::liver
    Liver trajectory example data
    json| rda| rds
    list
  6610. scHOT::MOB_subset
    MOB_subset spatial example data
    rda| rds
    list
  6611. scider::spe
    Description of the scider example datasets
    rda| rds
    SpatialExperiment
  6612. scLANE::scLANE_models
    An object of class 'scLANE'.
    rda| rds
    scLANE
  6613. scLANE::sim_counts
    A 'SingleCellExperiment' object containing simulated counts.
    rda| rds
    SingleCellExperiment
  6614. scLANE::sim_pseudotime
    A data.frame containing ground-truth pseudotime.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1198 x 1
  6615. scmap::ann
    Cell type annotations for data extracted from a publication by Yan et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 1
  6616. scmap::yan
    Single cell RNA-Seq data extracted from a publication by Yan et al.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20214 x 90
  6617. scMerge::example_sce
    Subsetted mouse ESC 'SingleCellExperiment' object
    rda| rds
    SingleCellExperiment
  6618. scMerge::segList
    Stably expressed gene list in official gene symbols for both human and mouse
    csv| json| rda| rds
    list
  6619. scMerge::segList_ensemblGeneID
    Stably expressed gene list in EnsemblGeneID for both human and mouse
    csv| json| rda| rds
    list
  6620. scMET::scmet_diff_dt
    Synthetic methylation data from two groups of cells
    rda| rds
    scmet_simulate_diff
  6621. scMET::scmet_dt
    Synthetic methylation data from a single population
    rda| rds
    scmet_simulate
  6622. scMultiSim::dens_nonzero
    this is the density function of log(x+1), where x is the non-zero values for ATAC-SEQ data
    rda| rds
    density
  6623. scMultiSim::gene_len_pool
    a pool of gene lengths to sample from
    json| rda| rds
    integer
  6624. scMultiSim::GRN_params_100
    100_gene_GRN is a matrix of GRN params consisting of 100 genes where: # - column 1 is the target gene ID, # - column 2 is the gene ID which acts as a transcription factor for the target (regulated) gene # - column 3 is the effect of the column 2 gene ID on the column 1 gene ID
    csv| xlsx| json| ndjson| rda| rds
    data.frame|130 x 3
  6625. scMultiSim::GRN_params_1139
    GRN_params_1139 is a matrix of GRN params consisting of 1139 genes where: # - column 1 is the target gene ID, # - column 2 is the gene ID which acts as a transcription factor for the target (regulated) gene # - column 3 is the effect of the column 2 gene ID on the column 1 gene ID
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1432 x 3
  6626. scMultiSim::len2nfrag
    from transcript length to number of fragments (for the nonUMI protocol)
    csv| json| rda| rds
    matrix|8118 x 0
  6627. scMultiSim::match_params
    distribution of kinetic parameters learned from the Zeisel UMI cortex datasets
    csv| json| rda| rds
    matrix|78120 x 3
  6628. SCnorm::ExampleSimSCData
    Example datasets for SCnorm
    csv| json| rda| rds
    matrix|5000 x 90
  6629. scone::cellcycle_genes
    Data: Positive and Negative Control Genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|603 x 2
  6630. scone::cortical_markers
    Data: Positive and Negative Control Genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|65 x 2
  6631. scone::housekeeping
    Data: Positive and Negative Control Genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|553 x 1
  6632. scone::housekeeping_revised
    Data: Positive and Negative Control Genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3804 x 2
  6633. Sconify::bz.gmcsf.final
    Bodenmiller-Zunder GM-CSF post-SCONE final data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 69
  6634. Sconify::bz.gmcsf.final.norm.scale
    Bodenmiller-Zunder GM-CSF post-SCONE final data, that's been quantile normalized and z scored.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 69
  6635. Sconify::exist
    Random musing
    json| rda| rds
    character
  6636. Sconify::funct.markers
    Functional markers from the Wanderlust dataset.
    json| rda| rds
    character
  6637. Sconify::input.markers
    Input markers for the Wanderlust dataset
    json| rda| rds
    character
  6638. Sconify::markers
    Markers for the Wanderlust dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27 x 2
  6639. Sconify::wand.combined
    Wanderlust data combined basal and IL7 cells
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 51
  6640. Sconify::wand.final
    Post-scone output of the "combiend" Wanderlust data.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 87
  6641. Sconify::wand.ideal.k
    A named vector to help the user determine the ideal k for the Wanderlust dataset.
    json| rda| rds
    numeric
  6642. Sconify::wand.il7
    Wanderlust IL7 data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 51
  6643. Sconify::wand.scone
    Wanderlust scone output
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|1000 x 34
  6644. SCOPE::coverageObj.scopeDemo
    Pre-stored coverageObj.scope data for demonstration purposes
    csv| json| rda| rds
    list
  6645. SCOPE::iCN_sim
    A post cross-sample segmentation integer copy number matrix returned by SCOPE in the demo
    csv| json| rda| rds
    matrix|1544 x 5
  6646. SCOPE::normObj.scopeDemo
    Pre-stored normObj.scope data for demonstration purposes
    csv| json| rda| rds
    list
  6647. SCOPE::QCmetric.scopeDemo
    Pre-stored QCmetric data for demonstration purposes
    csv| json| rda| rds
    matrix|3 x 8
  6648. SCOPE::ref_sim
    A reference genome in the toy dataset
    rda| rds
    GRanges
  6649. SCOPE::ref.scopeDemo
    Pre-stored 500kb-size reference genome for demonstration purposes
    rda| rds
    GRanges
  6650. SCOPE::Y_sim
    A read count matrix in the toy dataset
    csv| json| rda| rds
    matrix|1544 x 5
  6651. scoreInvHap::hetRefs
    Heterozygote genotypes in the references
    json| rda| rds
    list
  6652. scoreInvHap::info
    SNP reference description
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19416 x 6
  6653. scoreInvHap::inversionGR
    Inversions' description
    rda| rds
    GRanges
  6654. scoreInvHap::Refs
    Genotype frequency in references
    json| rda| rds
    list
  6655. scoreInvHap::SNPsR2
    R2 between the SNPs and the inversion status
    json| rda| rds
    list
  6656. scp::leduc_minimal
    Minimally processed single-cell proteomics data set
    rda| rds
    SingleCellExperiment
  6657. scp::mqScpData
    Example MaxQuant/SCoPE2 output
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1361 x 149
  6658. scp::sampleAnnotation
    Single cell sample annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|64 x 6
  6659. scp::scp1
    Single Cell QFeatures data
    rda| rds
    QFeatures
  6660. scPCA::background_df
    Simulated Background Data for cPCA and scPCA
    csv| xlsx| json| ndjson| rda| rds
    data.frame|400 x 30
  6661. scPCA::toy_df
    Simulated Target Data for cPCA and scPCA
    csv| xlsx| json| ndjson| rda| rds
    data.frame|400 x 31
  6662. scPipe::cell_barcode_matching
    cell barcode demultiplex statistics for a small sample scRNA-seq dataset to demonstrate capabilities of scPipe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 2
  6663. scPipe::sc_sample_data
    a small sample scRNA-seq counts dataset to demonstrate capabilities of scPipe
    csv| json| rda| rds
    matrix|1000 x 0
  6664. scPipe::sc_sample_qc
    quality control information for a small sample scRNA-seq dataset to demonstrate capabilities of scPipe.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|383 x 12
  6665. scPipe::UMI_duplication
    UMI duplication statistics for a small sample scRNA-seq dataset to demonstrate capabilities of scPipe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1001 x 2
  6666. scQTLtools::EQTL_obj
    The package includes five examplt datasets: a gene expression matrix, two SNP genotype matrices, a Seurat object, and an eQTL object.
    rda| rds
    eQTLObject
  6667. scQTLtools::GeneData
    The package includes five examplt datasets: a gene expression matrix, two SNP genotype matrices, a Seurat object, and an eQTL object.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 2705
  6668. scQTLtools::Seurat_obj
    The package includes five examplt datasets: a gene expression matrix, two SNP genotype matrices, a Seurat object, and an eQTL object.
    rda| rds
    Seurat
  6669. scQTLtools::SNPData
    The package includes five examplt datasets: a gene expression matrix, two SNP genotype matrices, a Seurat object, and an eQTL object.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 2705
  6670. scQTLtools::SNPData2
    The package includes five examplt datasets: a gene expression matrix, two SNP genotype matrices, a Seurat object, and an eQTL object.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 500
  6671. scReClassify::gse87795_subset_sce
    GSE827795 subset data
    rda| rds
    SingleCellExperiment
  6672. ScreenR::annotation_table
    Table for the annotation of Barcode
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5320 x 5
  6673. ScreenR::count_table
    Table of the count table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5323 x 15
  6674. scRepertoire::contig_list
    A List of Eight Single-cell TCR Sequencing Runs.
    csv| json| rda| rds
    list
  6675. scRepertoire::scRep_example
    A Seurat Object of 500 Single T cells,
    rda| rds
    Seurat
  6676. scruff::bamExample
    Example GAlignments Object
    rda| rds
    GAlignments
  6677. scruff::barcodeExample
    A vector of example cell barcodes.
    json| rda| rds
    character
  6678. scruff::cbtop10000
    Top 10,000 rows for v1, v2, and v3 cell barcode whitelist files
    csv| xlsx| json| ndjson| rda| rds
    data.table|10000 x 3
  6679. scruff::sceExample
    Example SingleCellExperiment Object
    rda| rds
    SingleCellExperiment
  6680. scruff::validCb
    Cell barcode whitelist (737K-august-2016.txt)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|737280 x 1
  6681. scShapes::scData
    Sample data for analysis
    json| rda| rds
    list
  6682. scTensor::GermMale
    The matrix which is used as test data of scTensor.
    csv| json| rda| rds
    matrix|242 x 852
  6683. scTensor::labelGermMale
    The vector contains the celltype information and color scheme of GermMale
    json| rda| rds
    character
  6684. scTensor::m
    The gene-wise mean vector of Quartz-Seq data.
    json| rda| rds
    numeric
  6685. scTensor::tsneGermMale
    The result of Rtsne against GermMale
    json| rda| rds
    list
  6686. scTensor::v
    The gene-wise variance vector of Quartz-Seq data.
    json| rda| rds
    numeric
  6687. scTGIF::DistalLungEpithelium
    Gene expression matrix of DistalLungEpithelium dataset containing five cluster.
    csv| json| rda| rds
    matrix|3397 x 80
  6688. scTGIF::label.DistalLungEpithelium
    Cellular label of DistalLungEpithelium dataset containing five cluster.
    json| rda| rds
    character
  6689. scTGIF::pca.DistalLungEpithelium
    The result of PCA of the DistalLungEpithelium dataset.
    csv| json| rda| rds
    matrix|80 x 2
  6690. scTHI.data::H3K27
    Example expression matrix for scTHI.
    csv| json| rda| rds
    matrix|21673 x 0
  6691. scTHI.data::H3K27.meta
    Annotation for the H3K27 e expression matrix for scTHI.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|527 x 9
  6692. scTHI.data::MGH45
    Example expression matrix for scTHI.
    csv| json| rda| rds
    matrix|17584 x 0
  6693. scTHI.data::MGH45.annotation
    Annotation for Example expression matrix for scTHI.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|608 x 2
  6694. scTHI.data::scExample
    Example expression matrix for scTHI.
    csv| json| rda| rds
    matrix|2000 x 100
  6695. scToppR::ifnb.de
    IFNB DE results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|92860 x 7
  6696. scToppR::ifnb.markers.df
    IFNB Marker DF
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|100 x 14
  6697. scToppR::ifnb.markers.list.CD8T
    IFNB Marker DF
    json| rda| rds
    character
  6698. scToppR::pbmc.markers
    PBMC markers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11629 x 7
  6699. scToppR::toppdata.airway
    toppData example using the airway dataset results
    csv| xlsx| json| ndjson| rda| rds
    data.frame|902 x 15
  6700. scToppR::toppdata.ifnb
    toppData example for ifnb.de
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12227 x 15
  6701. scToppR::toppdata.pbmc
    toppData example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8550 x 14
  6702. scTypeEval::black_list
    Default Gene Blacklist for scTypeEval
    json| rda| rds
    list
  6703. SDAMS::exampleSingleCell
    Two example datasets for SDAMS package
    rda| rds
    SummarizedExperiment
  6704. SDAMS::exampleSumExp
    Two example datasets for SDAMS package
    rda| rds
    SummarizedExperiment
  6705. seahtrue::revive_output_donor_A
    Dataset PBMC donor A
    rda| rds
    tbl_df|1 x 9
  6706. sechm::Chen2017
    Example dataset
    rda| rds
    SummarizedExperiment
  6707. segmenter::test_obj
    A segmentation object generated from the test data
    rda| rds
    segmentation
  6708. segmenter::test_objs
    A a list of segmentation objects generated from the test data
    rda| rds
    list
  6709. segmentSeq::hSL
    Preprocessed 'lociData' object containing likelihoods of methylation at each locus.
    rda| rds
    lociData
  6710. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6711. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6712. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6713. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6714. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6715. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6716. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6717. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6718. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6719. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6720. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6721. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6722. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6723. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6724. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6725. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6726. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6727. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6728. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6729. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6730. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6731. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6732. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6733. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6734. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6735. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6736. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6737. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6738. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6739. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6740. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6741. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6742. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6743. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6744. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6745. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6746. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6747. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6748. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6749. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6750. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6751. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6752. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6753. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6754. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6755. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6756. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6757. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6758. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6759. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6760. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6761. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6762. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6763. SemDist::IAccr
    Information Accretion Data
    json| rda| rds
    numeric
  6764. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6765. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6766. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6767. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6768. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6769. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6770. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6771. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6772. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6773. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6774. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6775. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6776. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6777. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6778. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6779. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6780. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6781. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6782. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6783. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6784. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6785. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6786. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6787. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6788. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6789. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6790. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6791. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6792. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6793. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6794. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6795. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6796. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6797. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6798. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6799. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6800. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6801. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6802. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6803. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6804. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6805. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6806. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6807. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6808. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6809. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6810. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6811. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6812. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6813. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6814. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6815. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6816. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6817. SemDist::parentcnt
    Parent Count Data
    json| rda| rds
    numeric
  6818. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6819. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6820. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6821. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6822. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6823. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6824. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6825. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6826. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6827. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6828. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6829. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6830. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6831. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6832. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6833. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6834. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6835. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6836. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6837. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6838. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6839. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6840. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6841. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6842. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6843. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6844. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6845. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6846. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6847. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6848. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6849. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6850. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6851. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6852. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6853. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6854. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6855. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6856. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6857. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6858. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6859. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6860. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6861. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6862. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6863. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6864. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6865. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6866. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6867. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6868. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6869. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6870. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6871. SemDist::termcnt
    Term Count Data
    json| rda| rds
    numeric
  6872. semisup::toydata
    Toydata
    json| rda| rds
    list
  6873. SEMPLR::SEMC
    Default SNP Effect Matrix Data Collection
    rda| rds
    SNPEffectMatrixCollection
  6874. seq.hotSPOT::mutation_data
    Single Nucleotide Variants in Clinically-Normal Epidermis
    csv| xlsx| json| ndjson| rda| rds
    data.frame|201 x 3
  6875. seq2pathway::Chipseq_Peak_demo
    chip seq loci data example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 5
  6876. seq2pathway::dat_chip
    chip seq data example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|639 x 1
  6877. seq2pathway::dat_RNA
    RNA sequence data example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5000 x 5
  6878. seq2pathway::GRanges_demo
    loci information with GRanges format
    rda| rds
    GRanges
  6879. seq2pathway.data::dat_gene2path_chip
    demo result of gene2pathway function from chip seq data
    json| rda| rds
    list
  6880. seq2pathway.data::dat_gene2path_RNA
    demo result of gene2pathway function from RNA seq data
    json| rda| rds
    list
  6881. seq2pathway.data::dat_seq2pathway_GOterms
    demo result of seq2pathway function from chip seq data
    json| rda| rds
    list
  6882. seq2pathway.data::dat_seq2pathway_Msig
    demo result of seq2pathway function from chip seq data
    json| rda| rds
    list
  6883. seq2pathway.data::Des_BP_list
    Description of GO term BP
    csv| json| rda| rds
    list
  6884. seq2pathway.data::Des_CC_list
    Description of GO term CC
    csv| json| rda| rds
    list
  6885. seq2pathway.data::Des_MF_list
    Description of GO term MF
    csv| json| rda| rds
    list
  6886. seq2pathway.data::gencode_coding
    Coding gene list in GENCODE 20.
    json| rda| rds
    factor
  6887. seq2pathway.data::gene_description
    demo data of adding gene description
    csv| xlsx| json| ndjson| rda| rds
    data.frame|561 x 2
  6888. seq2pathway.data::GO_BP_list
    Gene symbol list of GO term BP
    json| rda| rds
    list
  6889. seq2pathway.data::GO_CC_list
    Gene symbol list of GO term CC
    json| rda| rds
    list
  6890. seq2pathway.data::GO_GENCODE_df_hg_v19
    intersection genes of GO terms and GENCODE 19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17998 x 1
  6891. seq2pathway.data::GO_GENCODE_df_mm_vM1
    intersection genes of GO terms and GENCODE vM1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14328 x 1
  6892. seq2pathway.data::GO_MF_list
    Gene symbol list of GO term MF
    json| rda| rds
    list
  6893. seq2pathway.data::Msig_GENCODE_df_hg_v19
    intersection genes of MSigDB collection and GENCODE 19
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22751 x 1
  6894. seq2pathway.data::Msig_GENCODE_df_mm_vM1
    intersection genes of MSigDB collection and GENCODE vM1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15420 x 1
  6895. seq2pathway.data::MsigDB_C5
    MsigDB data set
    csv| rda| rds
    GSA.genesets
  6896. SeqArray::KG_P1_SampData
    Simulated sample data for 1000 Genomes Phase 1
    rda| rds
    AnnotatedDataFrame
  6897. seqc::ILM_aceview_gene_AGR
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6898. seqc::ILM_aceview_gene_BGI
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6899. seqc::ILM_aceview_gene_CNL
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6900. seqc::ILM_aceview_gene_COH
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 132
  6901. seqc::ILM_aceview_gene_MAY
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6902. seqc::ILM_aceview_gene_NVS
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6903. seqc::ILM_junction_AGR_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|630537 x 4
  6904. seqc::ILM_junction_AGR_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|591525 x 4
  6905. seqc::ILM_junction_AGR_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|663230 x 4
  6906. seqc::ILM_junction_AGR_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|638315 x 4
  6907. seqc::ILM_junction_BGI_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|540654 x 4
  6908. seqc::ILM_junction_BGI_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|498972 x 4
  6909. seqc::ILM_junction_BGI_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|574159 x 4
  6910. seqc::ILM_junction_BGI_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|549652 x 4
  6911. seqc::ILM_junction_CNL_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|522487 x 4
  6912. seqc::ILM_junction_CNL_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|505538 x 4
  6913. seqc::ILM_junction_CNL_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|608753 x 4
  6914. seqc::ILM_junction_CNL_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|564660 x 4
  6915. seqc::ILM_junction_COH_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|535458 x 4
  6916. seqc::ILM_junction_COH_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|494030 x 4
  6917. seqc::ILM_junction_COH_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|556186 x 4
  6918. seqc::ILM_junction_COH_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|544376 x 4
  6919. seqc::ILM_junction_MAY_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|566100 x 4
  6920. seqc::ILM_junction_MAY_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|507903 x 4
  6921. seqc::ILM_junction_MAY_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|548429 x 4
  6922. seqc::ILM_junction_MAY_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|544192 x 4
  6923. seqc::ILM_junction_NVS_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|593306 x 4
  6924. seqc::ILM_junction_NVS_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|549679 x 4
  6925. seqc::ILM_junction_NVS_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|622968 x 4
  6926. seqc::ILM_junction_NVS_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|620024 x 4
  6927. seqc::ILM_refseq_gene_AGR
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6928. seqc::ILM_refseq_gene_BGI
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6929. seqc::ILM_refseq_gene_CNL
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6930. seqc::ILM_refseq_gene_COH
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 132
  6931. seqc::ILM_refseq_gene_MAY
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6932. seqc::ILM_refseq_gene_NVS
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6933. seqc::LIF_aceview_gene_LIV
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 54
  6934. seqc::LIF_aceview_gene_NWU
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6935. seqc::LIF_aceview_gene_PSU
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6936. seqc::LIF_aceview_gene_SQW
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 0
  6937. seqc::LIF_junction_LIV_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|180651 x 4
  6938. seqc::LIF_junction_LIV_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|166972 x 4
  6939. seqc::LIF_junction_LIV_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|175386 x 4
  6940. seqc::LIF_junction_LIV_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|186716 x 4
  6941. seqc::LIF_junction_NWU_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20711 x 4
  6942. seqc::LIF_junction_NWU_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|14510 x 4
  6943. seqc::LIF_junction_NWU_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17795 x 4
  6944. seqc::LIF_junction_NWU_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17664 x 4
  6945. seqc::LIF_junction_PSU_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19357 x 4
  6946. seqc::LIF_junction_PSU_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17340 x 4
  6947. seqc::LIF_junction_PSU_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20829 x 4
  6948. seqc::LIF_junction_PSU_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19559 x 4
  6949. seqc::LIF_junction_SQW_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19100 x 4
  6950. seqc::LIF_junction_SQW_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16815 x 4
  6951. seqc::LIF_junction_SQW_C
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19997 x 4
  6952. seqc::LIF_junction_SQW_D
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18900 x 4
  6953. seqc::LIF_refseq_gene_LIV
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 54
  6954. seqc::LIF_refseq_gene_NWU
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6955. seqc::LIF_refseq_gene_PSU
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6956. seqc::LIF_refseq_gene_SQW
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 0
  6957. seqc::ROC_aceview_gene_MGP
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 8
  6958. seqc::ROC_aceview_gene_NYU
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 8
  6959. seqc::ROC_aceview_gene_SQW
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|56042 x 8
  6960. seqc::ROC_junction_MGP_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42537 x 4
  6961. seqc::ROC_junction_MGP_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55589 x 4
  6962. seqc::ROC_junction_NYU_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55158 x 4
  6963. seqc::ROC_junction_NYU_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60496 x 4
  6964. seqc::ROC_junction_SQW_A
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42176 x 4
  6965. seqc::ROC_junction_SQW_B
    Junction tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37293 x 4
  6966. seqc::ROC_refseq_gene_MGP
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 8
  6967. seqc::ROC_refseq_gene_NYU
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 8
  6968. seqc::ROC_refseq_gene_SQW
    Read count tables from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25794 x 8
  6969. seqc::taqman
    TaqMan RT-PCR results from the SEQC project
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1044 x 34
  6970. seqCAT::test_comparison
    Overlapping and compared SNVs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|51 x 27
  6971. seqCAT::test_profile_1
    SNV profile 1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|377 x 19
  6972. seqCAT::test_profile_2
    SNV profile 2
    csv| xlsx| json| ndjson| rda| rds
    data.frame|375 x 19
  6973. seqCAT::test_profile_3
    SNV profile 3
    csv| xlsx| json| ndjson| rda| rds
    data.frame|99 x 11
  6974. seqCAT::test_similarities
    Collated similarities object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 8
  6975. seqCAT::test_variant_list
    Modified variant list object
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 2
  6976. SeqGate::data_MiTF_1000genes
    Extract of a Transciptome Dataset from Human Melanoma Cell Line
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 6
  6977. SeqGSEA::DEscore
    Pre-calculated DE/DS scores
    json| rda| rds
    numeric
  6978. SeqGSEA::DEscore.perm
    Pre-calculated DE/DS scores
    csv| json| rda| rds
    matrix|182 x 100
  6979. SeqGSEA::DSscore
    Pre-calculated DE/DS scores
    json| rda| rds
    numeric
  6980. SeqGSEA::DSscore.perm
    Pre-calculated DE/DS scores
    csv| json| rda| rds
    matrix|182 x 100
  6981. SeqGSEA::GS_example
    SeqGeneSet object example
    rda| rds
    SeqGeneSet
  6982. SeqGSEA::RCS_example
    ReadCountSet object example
    rda| rds
    ReadCountSet
  6983. seqPattern::TBPpwm
    Position-weight matrix for TATA-box binding protein motif
    csv| json| rda| rds
    matrix|4 x 0
  6984. seqPattern::zebrafishPromoters
    Zebrafish promoters sequences
    rda| rds
    DNAStringSet
  6985. seqPattern::zebrafishPromoters24h
    Zebrafish promoters genomic coordinates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10785 x 7
  6986. seqsetvis::Bcell_peaks
    4 random peaks for paired-end data
    rda| rds
    GRanges
  6987. seqsetvis::chromHMM_demo_bw_states_gr
    MCF10A CTCF profiles at 20 windows per chromHMM state, hg38.
    rda| rds
    GRanges
  6988. seqsetvis::chromHMM_demo_chain_url
    URL to download hg19ToHg38 liftover chain from UCSC
    json| rda| rds
    character
  6989. seqsetvis::chromHMM_demo_overlaps_gr
    overlap of MCF10A CTCF with MCF7 chromHMM states, hg38.
    rda| rds
    GRanges
  6990. seqsetvis::chromHMM_demo_segmentation_url
    URL to download hg19 MCF7 chromHMM segmentation
    json| rda| rds
    character
  6991. seqsetvis::chromHMM_demo_state_colors
    original state name to color mappings stored in segmentation bed
    json| rda| rds
    character
  6992. seqsetvis::chromHMM_demo_state_total_widths
    state name to total width mappings, hg38
    json| rda| rds
    numeric
  6993. seqsetvis::CTCF_in_10a_bigWig_urls
    FTP URL path for vignette data.
    json| rda| rds
    character
  6994. seqsetvis::CTCF_in_10a_narrowPeak_grs
    list of GRanges that results in 100 random subset when overlapped
    rda| rds
    list
  6995. seqsetvis::CTCF_in_10a_narrowPeak_urls
    FTP URL path for vignette data. from
    json| rda| rds
    character
  6996. seqsetvis::CTCF_in_10a_overlaps_gr
    100 randomly selected regions from overlapping CTCF peaks in 10a cell ChIP-seq
    rda| rds
    GRanges
  6997. seqsetvis::CTCF_in_10a_profiles_dt
    Profiles for 100 randomly selected regions from overlapping CTCF peaks in 10a cell ChIP-seq Results from fetching bigwigs with CTCF_in_10a_overlaps_gr.
    csv| xlsx| json| ndjson| rda| rds
    data.table|4200 x 9
  6998. seqsetvis::CTCF_in_10a_profiles_gr
    Profiles for 100 randomly selected regions from overlapping CTCF peaks in 10a cell ChIP-seq Results from CTCF_in_10a_overlaps_gr
    rda| rds
    GRanges
  6999. seqsetvis::test_peaks
    4 random peaks for single-end data and 4 control regions 30kb downstream from each peak.
    rda| rds
    GRanges
  7000. SeqVarTools::pedigree
    Pedigree for example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 6
  7001. SEraster::merfish_mousePOA
    Preprocessed MERFISH dataset of the mouse preoptic area for a bregma -0.29 slice from a female naive animal (Animal ID = 1, Animal Sex = "Female", Behavior = "Naive", Bregma = "-0.29").
    rda| rds
    SpatialExperiment
  7002. serumStimulation::serumStimulation
    Data set from serum stimulation DNA micro array
    csv| json| rda| rds
    matrix|54675 x 13
  7003. SEtools::SE
    Example dataset
    rda| rds
    SummarizedExperiment
  7004. sevenC::cutoffBest10
    Default optimal cutoff value of logistic regression.
    json| rda| rds
    numeric
  7005. sevenC::cutoffByTF
    Optimal cutoff values for logistic regression models.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|124 x 3
  7006. sevenC::modelBest10Avg
    Default parameters for logistic regression model in sevenC.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 2
  7007. sevenC::motif.hg19.CTCF
    CTCF motif locations in human genome hg19.
    rda| rds
    GRanges
  7008. sevenC::motif.hg19.CTCF.chr22
    CTCF motif locations on chromosome 22 in human genome hg19.
    rda| rds
    GRanges
  7009. sevenC::motif.hg19.CTCF.chr22.cov
    CTCF motifs on human chromosome 22 with example coverage.
    rda| rds
    GRanges
  7010. sevenC::TFspecificModels
    TF specific parameters for logistic regression in sevenC
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|868 x 6
  7011. seventyGeneData::vanDeVijver
    Gene expression, annotations and clinical information for the Van de Vijver cohort
    rda| rds
    ExpressionSet
  7012. seventyGeneData::vantVeer
    Gene expression, annotations and clinical information for the van't Veer cohort
    rda| rds
    ExpressionSet
  7013. sfi::sfi
    Demo sfi data
    csv| xlsx| json| ndjson| rda| rds
    data.table|113801 x 3
  7014. SGSeq::gr
    Example genomic region of interest
    rda| rds
    GRanges
  7015. SGSeq::sgf_ann
    Example splice graph features (annotation-based)
    rda| rds
    SGFeatures
  7016. SGSeq::sgf_pred
    Example splice graph features (predicted)
    rda| rds
    SGFeatures
  7017. SGSeq::sgfc_ann
    Example splice graph feature counts (annotation-based)
    rda| rds
    SGFeatureCounts
  7018. SGSeq::sgfc_pred
    Example splice graph feature counts (predicted)
    rda| rds
    SGFeatureCounts
  7019. SGSeq::sgv_ann
    Example splice variants (annotation-based)
    rda| rds
    SGVariants
  7020. SGSeq::sgv_pred
    Example splice variants (predicted)
    rda| rds
    SGVariants
  7021. SGSeq::sgvc_ann
    Example splice variant counts (annotated)
    rda| rds
    SGVariantCounts
  7022. SGSeq::sgvc_ann_from_bam
    Example splice variant counts (annotated) from BAM files
    rda| rds
    SGVariantCounts
  7023. SGSeq::sgvc_pred
    Example splice variant counts (predicted)
    rda| rds
    SGVariantCounts
  7024. SGSeq::sgvc_pred_from_bam
    Example splice variant counts (predicted) from BAM files
    rda| rds
    SGVariantCounts
  7025. SGSeq::si
    Example sample information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 6
  7026. SGSeq::tx
    Example transcripts
    rda| rds
    CompressedGRangesList
  7027. SGSeq::txf_ann
    Example transcript features (annotation-based)
    rda| rds
    TxFeatures
  7028. SGSeq::txf_pred
    Example transcript features (predicted)
    rda| rds
    TxFeatures
  7029. SIAMCAT::feat.crc.zeller
    Example feature matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1754 x 141
  7030. SIAMCAT::meta.crc.zeller
    Example metadata matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|141 x 6
  7031. SIAMCAT::siamcat_example
    SIAMCAT example
    rda| rds
    siamcat
  7032. SigCheck::knownSignatures
    Previously identified gene signatures for use in 'sigCheckKnown'
    json| rda| rds
    list
  7033. SigCheck::nkiResults
    Precomputed list of results for a call to 'sigCheckAll' using the 'breastCancerNKI' dataset.
    json| rda| rds
    list
  7034. sigFeature::ExampleRawData
    Example dataset to test the performance of the sigFeature package.
    rda| rds
    SummarizedExperiment
  7035. sigFeature::featsweepSigFe
    Processed output data after using the function named "sigCVError()".
    json| rda| rds
    list
  7036. sigFeature::featureRankedList
    Processed output data after using the function named "svmrfeFeatureRanking()".
    json| rda| rds
    integer
  7037. sigFeature::results
    Processed output data after using the function named "sigFeature.enfold()".
    csv| json| rda| rds
    list
  7038. sigFeature::sigfeatureRankedList
    Processed output data after using the function named "sigFeature()".
    json| rda| rds
    integer
  7039. sights::ex_dataMatrix
    High-Throughput Screening example data - CMBA
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80 x 10
  7040. sights::inglese
    High-Throughput Screening example data - Inglese
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1280 x 45
  7041. signatureSearch::cell_info
    LINCS 2017 Cell Type Information
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|30 x 5
  7042. signatureSearch::cell_info2
    LINCS 2020 Cell Type Information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|240 x 5
  7043. signatureSearch::chembl_moa_list
    MOA to Gene Mappings
    json| rda| rds
    list
  7044. signatureSearch::clue_moa_list
    MOA to Drug Name Mappings
    json| rda| rds
    list
  7045. signatureSearch::drugs10
    Drug Names Used in Examples
    json| rda| rds
    character
  7046. signatureSearch::lincs_expr_inst_info
    Instance Information of LINCS Expression Database
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|38824 x 3
  7047. signatureSearch::lincs_pert_info
    LINCS 2017 Perturbation Information
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|8140 x 40
  7048. signatureSearch::lincs_pert_info2
    LINCS 2020 Perturbation Information
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|34419 x 48
  7049. signatureSearch::lincs_sig_info
    LINCS Signature Information
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|45956 x 3
  7050. signatureSearch::targetList
    Target Sample Data Set
    json| rda| rds
    numeric
  7051. signeR::cosmic_data
    COSMIC Mutational Signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 75
  7052. signeR::tcga_similarities
    TCGA Cosmic similarities
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|112 x 80
  7053. signeR::tcga_tumors
    TCGA tumors used on TCGA Explorer
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|37 x 2
  7054. signifinder::ovse
    Example expression data.
    rda| rds
    SummarizedExperiment
  7055. SigsPack::cosmicSigs
    COSMIC Signature Profiles
    csv| json| rda| rds
    matrix|96 x 30
  7056. SigsPack::hg19context_freq
    Trinuecleotide frequencies of the human reference genome hg19
    csv| json| rda| rds
    matrix|32 x 0
  7057. SigsPack::sigProfiler20190522
    COSMIC v3 whole genome SBS Signature Profiles
    csv| json| rda| rds
    matrix|96 x 67
  7058. SigsPack::sigProfilerExome
    COSMIC v3 exome SBS Signature Profiles
    csv| json| rda| rds
    matrix|96 x 67
  7059. sigsquared::BrCa443
    Breast Cancer 443 Data Set
    rda| rds
    ExpressionSet
  7060. sigvar::all_sig_pal
    Color palette for mutational signatures analyzed in the study by Morrison et al.
    json| rda| rds
    character
  7061. sigvar::carcinogens_mice_SBS
    Single base substitution signature attributions found in mice exposed to 20 known or suspected carcinogens.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|181 x 47
  7062. sigvar::carcinogens_mice_SBS.refs
    Reference single base substitution signatures found in mice exposed to 20 known or suspected carcinogens.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|96 x 13
  7063. sigvar::COSMIC3.0_ID
    Indel reference signatures for COSMIC3.0
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|83 x 18
  7064. sigvar::COSMIC3.0_SBS
    Single base substitution reference signatures for COSMIC3.0
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|96 x 68
  7065. sigvar::COSMIC3.1_CN
    Copy Number reference signatures for COSMIC3.1
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|48 x 8
  7066. sigvar::COSMIC3.3_CN
    Copy Number reference signatures for COSMIC3.3
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|48 x 25
  7067. sigvar::COSMIC3.3_DBS
    Double base reference signatures for COSMIC3.0
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|78 x 12
  7068. sigvar::COSMIC3.3_DBS_mm10
    Mice Double base reference signatures for COSMIC3.0
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|78 x 12
  7069. sigvar::COSMIC3.3_ID
    Indel reference signatures for COSMIC3.3.1
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|83 x 19
  7070. sigvar::COSMIC3.3.1_SBS
    Single base substitution reference signatures for COSMIC3.3.1
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|96 x 80
  7071. sigvar::COSMIC3.3.1_SBS_mm10
    Mice Single base substitution reference signatures for COSMIC3.3.1
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|96 x 80
  7072. sigvar::EGFR_context_counts_ordered
    Counts of each context class for the main transcript of gene EGFR
    rda| rds
    table
  7073. sigvar::EGFR_drivers_intogen_SBS96
    SBS96 spectrum from the intogen website for gene EGFR in lung adenocarcinomas
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|96 x 4
  7074. sigvar::ESCC_countries_SBS
    Single base substitution signature attributions found in esophageal squamous cell carcinoma across countries with varying incidence.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|552 x 31
  7075. sigvar::ESCC_countries_SBS.refs
    Reference COSMIC Single base substitution signatures found in esophageal squamous cell carcinoma across countries with varying incidence.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|96 x 30
  7076. sigvar::ESCC_sig_activity
    Activity of SBS, DBS, and ID mutational signatures in a global sample of esophageal squamous cell carcinoma cases.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|552 x 46
  7077. sigvar::ESCC_sig_similarity
    Cosine similarity of SBS, DBS, and ID mutational signatures found in a global sample of esophageal squamous cell carcinoma cases.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|43 x 43
  7078. sigvar::Intogen_EGFR_LUAD
    Driver mutations from the intogen website for gene EGFR in lung adenocarcinomas
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|25 x 13
  7079. sigvar::MESOMICS_CN_SBS
    Copy Number and Single Base Substitution mutational signatures for 120 malignant pleural mesothelioma from the MESOMICS cohort
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|120 x 41
  7080. sigvar::mutsig_carcinogens_mice_bootstrap_p_vals
    Bootstrap p-values comparing SVA results for carcinogen-exposed murine tumors to spontaneous tumors
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|29 x 7
  7081. sigvar::mutsig_carcinogens_mice_SBS
    Single Base Substitution mutational signatures for 181 mice exposed to known or suspected carcinogens
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|181 x 47
  7082. sigvar::mutsig_carcinogens_mice_SBS.refs
    Definitions of murine single base substitution mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|96 x 13
  7083. sigvar::PCAWG_SigProfiler_COSMIC_DBS
    Double Base Substitution COSMIC mutational signatures for 2780 tumors
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|2670 x 14
  7084. sigvar::PCAWG_SigProfiler_COSMIC_ID
    Indel COSMIC mutational signatures for 2780 tumors
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|2780 x 20
  7085. sigvar::PCAWG_SigProfiler_COSMIC_SBS
    Single Base Substitution COSMIC mutational signatures for 2780 tumors
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|2780 x 68
  7086. sigvar::radiation_sigs_morton
    Single base substitution signature attributions found in papillary thyroid carcinoma from Chernobyl incident survivors.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|356 x 16
  7087. sigvar::radiation_sigs_morton_cossim
    Cosine similarity matrix of Single base substitution signatures found in papillary thyroid carcinoma from Chernobyl incident survivors.
    csv| json| rda| rds
    matrix|13 x 13
  7088. sigvar::rcc_sig_activity
    Activity of SBS, DBS, and ID mutational signatures in a global sample of renal cell carcinoma cases.
    csv| xlsx| json| ndjson| rda| rds
    data.table|962 x 31
  7089. sigvar::rcc_sim
    Activity of SBS, DBS, and ID mutational signatures in a global sample of renal cell carcinoma cases.
    csv| json| rda| rds
    matrix|28 x 28
  7090. sigvar::sbs_palette
    Single Base Substitution COSMIC mutational signatures for 2780 tumors
    json| rda| rds
    character
  7091. sigvar::Sherlock_LCINS_SBS
    Single base substitution signature attributions found in Lung cancer in never smokers.
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|232 x 15
  7092. sigvar::Sherlock_LCINS_SBS.refs
    Reference COSMIC Single base substitution signatures found in Lung cancer in never smokers.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|96 x 16
  7093. sigvar::Sherlock_LCINS.metadata
    Metadata accompanying mutational signatures for lung cancer in never smokers.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|232 x 24
  7094. sigvar::smoker_sigs_chen
    Activity of Smoking, APOBEC, and Ageing mutational signatures in a sample of East Asian lung adenocarcinoma patients.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|88 x 9
  7095. sigvar::smoker_sigs_chen_cossim
    Cosine similarity of smoking, APOBEC, and ageing mutational signatures found in a sample of East Asian lung adenocarcinoma patients.
    csv| json| rda| rds
    matrix|3 x 3
  7096. sigvar::TP53_context_counts_ordered
    Counts of each context class for the main transcript of gene TP53
    rda| rds
    table
  7097. sigvar::TP53_drivers_intogen_LUAD
    Driver mutations from the intogen website for gene TP53 in lung adenocarcinomas
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|202 x 10
  7098. sigvar::TP53_drivers_intogen_SBS96
    SBS96 spectrum from the intogen website for gene TP53 in lung adenocarcinomas
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|96 x 4
  7099. sigvar::zhang_sig_activity
    Activity of SBS mutational signatures in samples of lung cancer in never smokers
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|213 x 39
  7100. sigvar::zhang_sig_similarity
    Cosine similarity of SBS mutational signatures found in samples of lung cancer in never smokers
    csv| json| rda| rds
    matrix|14 x 14
  7101. SIM::acgh.data
    Array Comparative Genomic Hybridization data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|99 x 46
  7102. SIM::chrom.table
    Table with chromosome information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|862 x 6
  7103. SIM::expr.data
    Expression data example
    csv| xlsx| json| ndjson| rda| rds
    data.frame|99 x 46
  7104. SIM::samples
    Samples for example data
    json| rda| rds
    character
  7105. SIMAT::Library
    Extracted compound information from an MSL library.
    csv| json| rda| rds
    list
  7106. SIMAT::RItable
    Extracted RI standard information from a 'csv' file.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|13 x 2
  7107. SIMAT::Run
    Extracted peaks from one SIM run.
    csv| json| rda| rds
    list
  7108. SIMAT::target.table
    Extracted target information from a 'csv' file.
    csv| json| rda| rds
    list
  7109. SIMAT::Targets
    Targets information in a list.
    csv| json| rda| rds
    list
  7110. SIMD::all_CpGsite_bin_chr18
    A simulation dataset of CpG sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 4
  7111. SIMD::EM_H1ESB1_MeDIP_sigleCpG
    A simulation dataset of MeDIP CpG sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 4
  7112. SIMD::EM2_H1ESB1_MeDIP_sigleCpG
    A simulation dataset of MeDIP CpG sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 4
  7113. SIMD::EM2_H1ESB2_MeDIP_sigleCpG
    A simulation dataset of MeDIP CpG sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 4
  7114. SIMD::H1ESB1_MRE_sigleCpG
    A simulation dataset of MRE CpG sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 4
  7115. SIMD::H1ESB2_MRE_sigleCpG
    A simulation dataset of MRE CpG sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 4
  7116. SIMD::three_mre_cpg
    A simulation dataset of MRE CpG sites.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2000 x 4
  7117. similaRpeak::chr7Profiles
    ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1 (for demonstration purpose)
    csv| json| rda| rds
    list
  7118. similaRpeak::demoProfiles
    ChIP-Seq profiles of region chr7:61968807-61969730 related to enhancers H3K27ac and H3K4me1 (for demonstration purpose)
    csv| json| rda| rds
    list
  7119. SIMLR::BuettnerFlorian
    test dataset for SIMLR
    rda| rds
    list
  7120. SIMLR::ZeiselAmit
    test dataset for SIMLR large scale
    rda| rds
    list
  7121. simpIntLists::ArabidopsisBioGRIDInteractionEntrezId
    BioGRID interactions for thale cress (Arabidopsis thaliana), entrez ids are used as identifiers
    csv| json| rda| rds
    list
  7122. simpIntLists::ArabidopsisBioGRIDInteractionOfficial
    BioGRID interactions for thale cress (Arabidopsis thaliana), official names are used as identifiers
    csv| json| rda| rds
    list
  7123. simpIntLists::ArabidopsisBioGRIDInteractionUniqueId
    BioGRID interactions for thale cress (Arabidopsis thaliana), unique ids are used as identifiers
    csv| json| rda| rds
    list
  7124. simpIntLists::C.ElegansBioGRIDInteractionEntrezId
    BioGRID interactions for C.elegans (Caenorhabditis elegans), entrez ids are used as identifiers
    csv| json| rda| rds
    list
  7125. simpIntLists::C.ElegansBioGRIDInteractionOfficial
    BioGRID interactions for C.elegans (Caenorhabditis elegans), official names are used as identifiers
    csv| json| rda| rds
    list
  7126. simpIntLists::C.ElegansBioGRIDInteractionUniqueId
    BioGRID interactions for C.elegans (Caenorhabditis elegans), unique ids are used as identifiers
    csv| json| rda| rds
    list
  7127. simpIntLists::FruitFlyBioGRIDInteractionEntrezId
    BioGRID interactions for Fruit fly (Drosophila melanogaster), entrez ids are used as identifiers
    csv| json| rda| rds
    list
  7128. simpIntLists::FruitFlyBioGRIDInteractionOfficial
    BioGRID interactions for Fruit fly (Drosophila melanogaster), official names are used as identifiers
    csv| json| rda| rds
    list
  7129. simpIntLists::FruitFlyBioGRIDInteractionUniqueId
    BioGRID interactions for Fruit fly (Drosophila melanogaster), unique ids (systematic names) are used as identifiers
    csv| json| rda| rds
    list
  7130. simpIntLists::HumanBioGRIDInteractionEntrezId
    BioGRID interactions for human (Homo sapiens), entrez ids are used as identifiers
    csv| json| rda| rds
    list
  7131. simpIntLists::HumanBioGRIDInteractionOfficial
    BioGRID interactions for human (Homo sapiens), official names are used as identifiers
    csv| json| rda| rds
    list
  7132. simpIntLists::HumanBioGRIDInteractionUniqueId
    BioGRID interactions for human (Homo sapiens), unique ids (systematic names) are used as identifiers
    csv| json| rda| rds
    list
  7133. simpIntLists::MouseBioGRIDInteractionEntrezId
    BioGRID interactions for Mouse (Mus musculus), entrez ids are used as identifiers
    csv| json| rda| rds
    list
  7134. simpIntLists::MouseBioGRIDInteractionOfficial
    BioGRID interactions for Mouse (Mus musculus), official names ids are used as identifiers
    csv| json| rda| rds
    list
  7135. simpIntLists::MouseBioGRIDInteractionUniqueId
    BioGRID interactions for Mouse (Mus musculus), unique ids (systematic names) are used as identifiers
    csv| json| rda| rds
    list
  7136. simpIntLists::S.PombeBioGRIDInteractionEntrezId
    BioGRID interactions for fission yeast (Schizosaccharomyces pombe), entrez ids are used as identifiers
    csv| json| rda| rds
    list
  7137. simpIntLists::S.PombeBioGRIDInteractionOfficial
    BioGRID interactions for fission yeast (Schizosaccharomyces pombe), official names are used as identifiers
    csv| json| rda| rds
    list
  7138. simpIntLists::S.PombeBioGRIDInteractionUniqueId
    BioGRID interactions for fission yeast (Schizosaccharomyces pombe), unique ids (systematic names) are used as identifiers
    csv| json| rda| rds
    list
  7139. simpIntLists::YeastBioGRIDInteractionEntrezId
    BioGRID interactions for budding yeast (Saccharomyces cerevisiae), entrez ids are used as identifiers
    csv| json| rda| rds
    list
  7140. simpIntLists::YeastBioGRIDInteractionOfficial
    BioGRID interactions for budding yeast (Saccharomyces cerevisiae), official names are used as identifiers
    csv| json| rda| rds
    list
  7141. simpIntLists::YeastBioGRIDInteractionUniqueId
    BioGRID interactions for budding yeast (Saccharomyces cerevisiae), unique ids (systematic names) are used as identifiers
    csv| json| rda| rds
    list
  7142. sincell::ExpressionMatrix
    Single-cell expression data for genes differentially expressed in differentiating human skeletal muscle myoblasts cells
    csv| json| rda| rds
    matrix|575 x 0
  7143. sincell::geneset.list
    Example of a geneset collection
    json| rda| rds
    list
  7144. Single.mTEC.Transcriptomes::aireDependentSansom
    List of Aire-dependent genes
    json| rda| rds
    character
  7145. Single.mTEC.Transcriptomes::biotype
    Mouse biotypes
    json| rda| rds
    character
  7146. Single.mTEC.Transcriptomes::biotype
    Mouse biotypes
    json| rda| rds
    character
  7147. Single.mTEC.Transcriptomes::cea1Coexpression
    Cea1 co-expression group data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48701 x 12
  7148. Single.mTEC.Transcriptomes::corMatSp
    Gene-gene correlation network
    csv| json| rda| rds
    matrix|2129 x 0
  7149. Single.mTEC.Transcriptomes::corMatSpNoMarker
    Gene-gene correlation network
    csv| rda| rds
    matrix|17511 x 0
  7150. Single.mTEC.Transcriptomes::deGenesNone
    Highly variable genes.
    json| rda| rds
    character
  7151. Single.mTEC.Transcriptomes::deGenesSansom
    Highly variable genes from Sansom et al.
    json| rda| rds
    character
  7152. Single.mTEC.Transcriptomes::dxd
    Count data from the single-mTEC data.
    rda| rds
    DESeqDataSet
  7153. Single.mTEC.Transcriptomes::dxdATAC
    ATAC-seq summarized counts.
    rda| rds
    DESeqDataSet
  7154. Single.mTEC.Transcriptomes::dxdFANTOM
    FANTOM dataset
    rda| rds
    DESeqDataSet
  7155. Single.mTEC.Transcriptomes::geneNames
    Mouse gene names
    json| rda| rds
    character
  7156. Single.mTEC.Transcriptomes::geneNames
    Mouse gene names
    json| rda| rds
    character
  7157. Single.mTEC.Transcriptomes::geneRanges
    Genomic range coordinates.
    rda| rds
    GRanges
  7158. Single.mTEC.Transcriptomes::muc1Coexpression
    Muc1 co-expression group data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|48701 x 12
  7159. Single.mTEC.Transcriptomes::nomarkerCellsClustering
    Clustering results
    rda| rds
    list
  7160. Single.mTEC.Transcriptomes::percentsGG
    Mapping statistics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1380 x 5
  7161. Single.mTEC.Transcriptomes::permsAllClusters
    Permutation results
    csv| json| rda| rds
    list
  7162. Single.mTEC.Transcriptomes::realAllClusters
    Permutation results
    json| rda| rds
    numeric
  7163. Single.mTEC.Transcriptomes::tras
    Tissue restricted antigens lists.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4117 x 10
  7164. Single.mTEC.Transcriptomes::Ycorr
    Output from scLVM
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17511 x 0
  7165. SingleCellSignalR::example_dataset
    An example of single-cell RNA-seq data set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1629 x 0
  7166. singleCellTK::MitoGenes
    List of mitochondrial genes of multiple reference
    csv| json| rda| rds
    list
  7167. singleCellTK::mouseBrainSubsetSCE
    Example Single Cell RNA-Seq data in SingleCellExperiment Object, GSE60361 subset
    rda| rds
    SingleCellExperiment
  7168. singleCellTK::msigdb_table
    MSigDB gene get Category table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 5
  7169. singleCellTK::sce
    Example Single Cell RNA-Seq data in SingleCellExperiment Object, subset of 10x public dataset
    rda| rds
    SingleCellExperiment
  7170. singleCellTK::sceBatches
    Example Single Cell RNA-Seq data in SingleCellExperiment object, with different batches annotated
    rda| rds
    SingleCellExperiment
  7171. singleCellTK::SEG
    Stably Expressed Gene (SEG) list obect, with SEG sets for human and mouse.
    json| rda| rds
    list
  7172. singscore::scoredf_ccle_epi
    Pre-computed scores of the CCLE dataset against an epithelial gene signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55 x 2
  7173. singscore::scoredf_ccle_mes
    Pre-computed scores of the CCLE dataset against a mesenchymal gene signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|55 x 2
  7174. singscore::scoredf_tcga_epi
    Pre-computed scores of the TCGA breast cancer gene expression matrix against an epithelial signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1119 x 2
  7175. singscore::scoredf_tcga_mes
    Pre-computed scores of the TCGA breast cancer gene expression matrix against a mesenchymal signature
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1119 x 2
  7176. singscore::tgfb_expr_10_se
    An example gene expression dataset
    rda| rds
    SummarizedExperiment
  7177. singscore::tgfb_gs_dn
    Gene set of down-regulated genes for the TGFb-induced EMT gene signature
    rda| rds
    GeneSet
  7178. singscore::tgfb_gs_up
    Gene set of up-regulated genes for the TGFb-induced EMT gene signature
    rda| rds
    GeneSet
  7179. singscore::toy_expr_se
    A toy gene expression dataset of two samples
    rda| rds
    SummarizedExperiment
  7180. singscore::toy_gs_dn
    A gene set object of down-regulated genes for the toy dataset
    rda| rds
    GeneSet
  7181. singscore::toy_gs_up
    A gene set object of up-regulated genes for the toy dataset
    rda| rds
    GeneSet
  7182. SingscoreAMLMutations::AMLPatientMutationsTCGA
    Mutation data for 4 genes for the TCGA AML patients
    csv| xlsx| json| ndjson| rda| rds
    data.frame|151 x 4
  7183. sitePath::h3n2_align
    Multiple sequence alignment of H3N2's HA protein
    rda| rds
    alignment
  7184. sitePath::h3n2_align_reduced
    Multiple sequence alignment of H3N2's HA protein
    rda| rds
    alignment
  7185. sitePath::h3n2_tree
    Phylogenetic tree of H3N2's HA protein
    rda| rds
    phylo
  7186. sitePath::h3n2_tree_reduced
    Phylogenetic tree of H3N2's HA protein
    rda| rds
    phylo
  7187. sitePath::sars2_align
    Multiple sequence alignment of SARS-CoV-2 genome CDS
    rda| rds
    alignment
  7188. sitePath::sars2_tree
    Phylogenetic tree of SARS-CoV-2 genome CDS
    rda| rds
    phylo
  7189. sitePath::zikv_align
    Multiple sequence alignment of Zika virus polyprotein
    rda| rds
    alignment
  7190. sitePath::zikv_align_reduced
    Multiple sequence alignment of Zika virus polyprotein
    rda| rds
    alignment
  7191. sitePath::zikv_tree
    Phylogenetic tree of Zika virus polyprotein
    rda| rds
    phylo
  7192. sitePath::zikv_tree_reduced
    Phylogenetic tree of Zika virus polyprotein
    rda| rds
    phylo
  7193. slalom::mesc
    A single-cell expression dataset to demonstrate capabilities of slalom from mouse embryonic stem cells (mESCs)
    rda| rds
    SingleCellExperiment
  7194. slingshot::slingshotExample
    Bifurcating lineages data
    json| rda| rds
    list
  7195. SLqPCR::SLqPCRdata
    SIRS-Lab inhouse qPCR data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 4
  7196. SLqPCR::vandesompele
    Data set of Vandesompele et al (2002)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|85 x 10
  7197. SMAD::TestDatInput
    Test data for SMAD
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5000 x 5
  7198. smartid::sim_sce_test
    scRNA-seq test data of 4 groups simulated by 'splatter'.
    rda| rds
    SingleCellExperiment
  7199. SmartPhos::dda_example
    dda_example
    rda| rds
    MultiAssayExperiment
  7200. SmartPhos::dia_example
    dia_example
    rda| rds
    MultiAssayExperiment
  7201. SmartPhos::Homo_sapien_kinase_substrate_network
    Homo_sapien_kinase_substrate_network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32103 x 4
  7202. SmartPhos::Mus_musculus_kinase_substrate_network
    Mus_musculus_kinase_substrate_network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|25144 x 4
  7203. SmartPhos::swissProt
    swissProt
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|37532 x 5
  7204. SMITE::expression_curated
    A toy dataset ofcurated RNA-seq to test within SMITE
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20819 x 2
  7205. SMITE::genes
    A small set of RefSeq genes for converting
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 1
  7206. SMITE::h3k4me1
    A toy dataset of H3k4me1 peaks to test within SMITE
    csv| xlsx| json| ndjson| rda| rds
    data.frame|75448 x 3
  7207. SMITE::hg19_genes
    A bed file annotating Refseq genes for the hg19 genome build
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41633 x 6
  7208. SMITE::methylation
    A toy dataset of DNA methylation to test within SMITE
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30000 x 5
  7209. SMITE::REACTOME
    An Igraph network for REACTOME with nodes as gene symbols
    rda| rds
    igraph
  7210. SMITE::test_annotation
    A toy PvalueAnnotation
    rda| rds
    PvalueAnnotation
  7211. smoppix::Eng
    Spatial transcriptomics data of mouse fibroblast cells
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 5
  7212. smoppix::EngRois
    Spatial transcriptomics data of mouse fibroblast cells
    rda| rds
    list
  7213. smoppix::Yang
    Spatial transcriptomics data of Selaginella moellendorffii roots
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150432 x 6
  7214. SNAData::acqTime1
    Freeman's EIES Network
    rda| rds
    graphNEL
  7215. SNAData::acqTime2
    Freeman's EIES Network
    rda| rds
    graphNEL
  7216. SNAData::advice
    Krackhardt's High-tech Managers
    rda| rds
    graphNEL
  7217. SNAData::basicGoods
    Countries Trade Data
    rda| rds
    graphNEL
  7218. SNAData::business
    Padgett's Florentine Families
    rda| rds
    graphNEL
  7219. SNAData::CEOclubsAM
    Galaskiewicz's CEO and Clubs Network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 15
  7220. SNAData::CEOclubsBPG
    Galaskiewicz's CEO and Clubs Network
    rda| rds
    graphNEL
  7221. SNAData::countriesAttrs
    Countries Trade Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 4
  7222. SNAData::crudeMaterials
    Countries Trade Data
    rda| rds
    graphNEL
  7223. SNAData::diplomats
    Countries Trade Data
    rda| rds
    graphNEL
  7224. SNAData::florentineAttrs
    Padgett's Florentine Families
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 3
  7225. SNAData::food
    Countries Trade Data
    rda| rds
    graphNEL
  7226. SNAData::freemanAttrs
    Freeman's EIES Network
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32 x 4
  7227. SNAData::friendship
    Krackhardt's High-tech Managers
    rda| rds
    graphNEL
  7228. SNAData::krackhardtAttrs
    Krackhardt's High-tech Managers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|21 x 4
  7229. SNAData::marital
    Padgett's Florentine Families
    rda| rds
    graphNEL
  7230. SNAData::messages
    Freeman's EIES Network
    rda| rds
    graphNEL
  7231. SNAData::minerals
    Countries Trade Data
    rda| rds
    graphNEL
  7232. SNAData::reportsTo
    Krackhardt's High-tech Managers
    rda| rds
    graphNEL
  7233. SNPhood::SNPhood.o
    SNPhood example data
    rda| rds
    SNPhood
  7234. SNPRelate::hapmap_geno
    SNP genotypes of HapMap samples
    json| rda| rds
    list
  7235. snpStats::Asnps
    Test data for the snpStats package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9445 x 2
  7236. snpStats::Autosomes
    Test data for the snpStats package
    rda| rds
    SnpMatrix|400 x 9445
  7237. snpStats::ceph.1mb
    Datasets to illustrate calculation of linkage disequilibrium statistics
    rda| rds
    SnpMatrix|90 x 603
  7238. snpStats::genotypes
    Test data for family association tests
    rda| rds
    SnpMatrix|3017 x 43
  7239. snpStats::pedData
    Test data for family association tests
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3017 x 6
  7240. snpStats::snp.support
    Data for exercise in use of the snpStats package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28501 x 4
  7241. snpStats::snps.10
    Data for exercise in use of the snpStats package
    rda| rds
    SnpMatrix|1000 x 28501
  7242. snpStats::subject.data
    Test data for the snpStats package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|400 x 4
  7243. snpStats::subject.support
    Data for exercise in use of the snpStats package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 2
  7244. snpStats::support.ld
    Datasets to illustrate calculation of linkage disequilibrium statistics
    csv| xlsx| json| ndjson| rda| rds
    data.frame|603 x 5
  7245. snpStats::Xchromosome
    Test data for the snpStats package
    rda| rds
    XSnpMatrix|400 x 155
  7246. snpStats::Xsnps
    Test data for the snpStats package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|155 x 1
  7247. snpStats::yri.1mb
    Datasets to illustrate calculation of linkage disequilibrium statistics
    rda| rds
    SnpMatrix|90 x 603
  7248. SomatiCAData::glio
    Sequencing data for a tumor sample with control.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3458745 x 7
  7249. SomaticCancerAlterations::gbm_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7250. SomaticCancerAlterations::hnsc_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7251. SomaticCancerAlterations::kirc_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7252. SomaticCancerAlterations::luad_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7253. SomaticCancerAlterations::lusc_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7254. SomaticCancerAlterations::meta
    Somatic Cancer Alterations Data Sets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 9
  7255. SomaticCancerAlterations::ov_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7256. SomaticCancerAlterations::skcm_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7257. SomaticCancerAlterations::thca_tcga
    Somatic Cancer Alterations Data Sets
    rda| rds
    GRanges
  7258. SomaticSignatures::k3we
    Kmer datasets
    rda| rds
    table
  7259. SomaticSignatures::k3wg
    Kmer datasets
    json| rda| rds
    array
  7260. SomaticSignatures::sca_mm
    SomaticCancerAlterations Results
    csv| json| rda| rds
    matrix|96 x 8
  7261. SomaticSignatures::sca_motifs_tiny
    SomaticCancerAlterations Results
    rda| rds
    VRanges
  7262. SomaticSignatures::signatures21
    21 Signatures
    csv| json| rda| rds
    matrix|96 x 27
  7263. SomaticSignatures::sigs_nmf
    SomaticCancerAlterations Results
    rda| rds
    MutationalSignatures
  7264. SomaticSignatures::sigs_pca
    SomaticCancerAlterations Results
    rda| rds
    MutationalSignatures
  7265. SOMNiBUS::RAdat
    A simulated methylation dataset based on a real data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5289 x 6
  7266. SOMNiBUS::RAdat2
    A simulated methylation dataset based on a real data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6140 x 13
  7267. sosta::sostaSPE
    Example SpatialExperiment Object with Simulated Tissue Images and Point Patterns
    rda| rds
    SpatialExperiment
  7268. SpaceMarkers::curated_genes
    Curated Genes for example purposes
    json| rda| rds
    character
  7269. SpaceMarkers::optParams
    Optimal paramters of 5 patterns from CoGAPS.
    csv| json| rda| rds
    matrix|2 x 2
  7270. spacexr::rctdSim
    Simulated spatial transcriptomics dataset
    rda| rds
    list
  7271. spammR::oneKSoilsCoords
    Soil sample coordinates for the sample information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|127 x 3
  7272. spammR::oneKSoilsMeta
    Soil samples from the 1000 soils project Row names indiciate KEGG Orthologs, Column names indicate locations Soil samples metadata for the sample information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|142 x 21
  7273. spammR::pancMeta
    Here is the data to be included in the spammR package
    csv| xlsx| json| ndjson| rda| rds
    data.frame|63 x 15
  7274. spammR::protMeta
    Protein metadata for general uniprot data, including the pancProts column for the panc data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6662 x 6
  7275. spammR::smallPancData
    Pancreatic proteomics measurements from Gosline et al. proteomics study. Row names indicate individual proteins, columns indicate sample identifiers described in 'pancMeta'. Individual values show un-transformed abundance values for each protein. List of proteomic measurements in a list sorted from individual regions of the pancreas. A subset of the data at https://figshare.com/articles/dataset/spammR_Files/29250962
    csv| json| rda| rds
    list
  7276. SpaNorm::HumanDLPFC
    Human dorsolateral prefrontal cortex (DLPFC) visium sample
    rda| rds
    SpatialExperiment
  7277. spARI::spARI_example_data
    Example data for spARI
    json| rda| rds
    list
  7278. sparsenetgls::bandprec
    bandprec data for vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 50
  7279. SparseSignatures::background
    germline replication error
    json| rda| rds
    numeric
  7280. SparseSignatures::background2
    COSMIC replication error
    json| rda| rds
    numeric
  7281. SparseSignatures::cv_example
    example of results obtained with the function nmf.LassoCV on the counts input from Nik-Zainal, Serena, et al. (2016).
    json| rda| rds
    list
  7282. SparseSignatures::imported_data
    example of imported data from Nik-Zainal, Serena, et al. (2016).
    csv| json| rda| rds
    matrix|3 x 96
  7283. SparseSignatures::lambda_range_example
    example of results obtained with the function lambdaRangeBetaEvaluation on the counts input from Nik-Zainal, Serena, et al. (2016).
    json| rda| rds
    matrix|1 x 7
  7284. SparseSignatures::mutation_categories
    trinucleotides mutation categories
    csv| xlsx| json| ndjson| rda| rds
    data.table|96 x 3
  7285. SparseSignatures::nmf_LassoK_example
    example of results obtained with the function nmf.LassoK on the counts input from Nik-Zainal, Serena, et al. (2016).
    json| rda| rds
    list
  7286. SparseSignatures::patients
    point mutations for 560 breast tumors
    csv| json| rda| rds
    matrix|560 x 96
  7287. SparseSignatures::ssm560_reduced
    a reduced version of the point mutations for 560 breast tumors in the format compatible with the import function
    csv| xlsx| json| ndjson| rda| rds
    data.table|22828 x 6
  7288. SparseSignatures::starting_betas_example
    example of results obtained with the function starting.betas.estimation on the counts input from Nik-Zainal, Serena, et al. (2016).
    csv| json| rda| rds
    matrix|10 x 1
  7289. spaSim::bg1
    Background cells (4915 cells in a 2000*2000 window)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4951 x 3
  7290. SpatialArtifacts::spe_vignette
    Example SpatialExperiment for Vignettes
    rda| rds
    SpatialExperiment
  7291. spatialDE::MOB_sample_info
    Mouse Olfactory Bulb sample metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|260 x 3
  7292. spatialDE::Rep11_MOB_0
    Mouse Olfactory Bulb spatial gene expression data
    csv| json| rda| rds
    matrix|16218 x 0
  7293. SpatialDecon::cellcols
    Default colors for the cell types in the safeTME matrix
    json| rda| rds
    character
  7294. SpatialDecon::mean.resid.sd
    Genes' biological variability in immune deconvolution from TCGA.
    json| rda| rds
    numeric
  7295. SpatialDecon::mini_geomx_dataset
    Small example GeoMx data
    json| rda| rds
    list
  7296. SpatialDecon::mini_singleCell_dataset
    Mini human colon single cell dataset
    rda| rds
    list
  7297. SpatialDecon::nsclc
    Large example GeoMx data
    rda| rds
    NanoStringGeoMxSet
  7298. SpatialDecon::safeTME
    SafeTME matrix
    csv| json| rda| rds
    matrix|906 x 18
  7299. SpatialDecon::safeTME.matches
    Mapping from granularly-defined cell populations to broaded cell populations
    json| rda| rds
    list
  7300. SpatialFeatureExperiment::visium_row_col
    Row and columns of Visium barcodes on the slide
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4992 x 3
  7301. spatialHeatmap::aSVG.remote.repo
    A list of URLs of remote aSVG repos
    csv| json| rda| rds
    list
  7302. spatialLIBD::libd_layer_colors
    Vector of LIBD layer colors
    json| rda| rds
    character
  7303. spatialLIBD::tstats_Human_DLPFC_snRNAseq_Nguyen_topLayer
    Cell cluster t-statistics from Tran et al
    csv| json| rda| rds
    matrix|692 x 31
  7304. speckle::pbmc_props
    Cell type proportions from single cell PBMC data
    json| rda| rds
    list
  7305. specL::iRTpeptides
    iRT peptides - independent retention time peptides
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31 x 2
  7306. specL::ms1.p2069
    ms1 mass
    json| rda| rds
    numeric
  7307. specL::peptideStd
    Peptide standard
    csv| rda| rds
    psmSet
  7308. specL::peptideStd.redundant
    Peptide standard
    csv| rda| rds
    psmSet
  7309. SpeCond::expressionSpeCondExample
    The expression matrix example used in the SpeCond package
    csv| json| rda| rds
    matrix|220 x 32
  7310. SpeCond::expSetSpeCondExample
    An ExpressionSet example object used in the SpeCond package
    rda| rds
    ExpressionSet
  7311. SpeCond::simulatedSpeCondData
    An example of simulated expression matrix used in the SpeCond package
    csv| json| rda| rds
    matrix|600 x 30
  7312. Spectra::fft_spectrum
    Fast fourier transform artefact filter
    rda| rds
    Spectra
  7313. SpectralTAD::rao_chr20_25_rep
    Contact matrix from Rao 2014, chromosome 20, 25kb resolution
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2125980 x 3
  7314. SPEM::sos
    SOS pathway time series data
    rda| rds
    ExpressionSet
  7315. SPIA::ALL_Colorectal
    Results from a microarray experiment comparing colorectal cancer samples and normal tissue samples.
    json| rda| rds
    character
  7316. SPIA::ALL_Vessels
    Results from a microarray expriment comparing umbilical veins and arteries tissues
    json| rda| rds
    character
  7317. SPIA::DE_Colorectal
    Results from a microarray experiment comparing colorectal cancer samples and normal tissue samples.
    json| rda| rds
    numeric
  7318. SPIA::DE_Vessels
    Results from a microarray expriment comparing umbilical veins and arteries tissues
    json| rda| rds
    numeric
  7319. SPIA::top
    Results from a microarray experiment comparing colorectal cancer samples and normal tissue samples.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18045 x 8
  7320. SPIAT::defined_image
    SPE object of a simulated image with defined cell types based on marker combinations.
    rda| rds
    SpatialExperiment
  7321. SPIAT::image_no_markers
    SPE object of a formatted image without marker intensities (simulated by 'spaSim' package)
    rda| rds
    SpatialExperiment
  7322. SPIAT::simulated_image
    SPE object of a formatted image (simulated by 'spaSim' package)
    rda| rds
    SpatialExperiment
  7323. SPICEY::atac
    Example single-cell ATAC-seq differential accessibility data
    rda| rds
    CompressedGRangesList
  7324. SPICEY::cicero_links
    Example Cicero co-accessibility links
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5080 x 3
  7325. SPICEY::rna
    Example single-cell RNA-seq differential expression data
    json| rda| rds
    list
  7326. spicyR::diabetesData
    Imaging mass cytometry of human pancreas in type 1 diabetes (Damond et al. 2019)
    rda| rds
    SingleCellExperiment
  7327. spicyR::spicyTest
    Results of the image-level test on diabetesData
    rda| rds
    SpicyResults
  7328. SpiecEasi::amgut1.filt
    American Gut Project
    csv| json| rda| rds
    matrix|289 x 127
  7329. SpiecEasi::amgut2.filt.phy
    American Gut Project
    rda| rds
    phyloseq
  7330. SpiecEasi::hmp216S
    Human Microbiome Project 2
    rda| rds
    phyloseq
  7331. SpiecEasi::hmp2prot
    Human Microbiome Project 2
    rda| rds
    phyloseq
  7332. SpikeIn::SpikeIn133
    Affymetrix SpikeIn Experiment Data
    rda| rds
    AffyBatch
  7333. SpikeIn::SpikeIn95
    Affymetrix SpikeIn Experiment Data
    rda| rds
    AffyBatch
  7334. SpikeInSubset::hgu133a.spikein.xhyb
    Cross hybridizers
    json| rda| rds
    list
  7335. SpikeInSubset::mas133
    Subset of Affymetrix SpikeIn Experiment Data
    rda| rds
    ExpressionSet
  7336. SpikeInSubset::mas95
    Subset of Affymetrix SpikeIn Experiment Data
    rda| rds
    ExpressionSet
  7337. SpikeInSubset::rma133
    Subset of Affymetrix SpikeIn Experiment Data
    rda| rds
    ExpressionSet
  7338. SpikeInSubset::rma95
    Subset of Affymetrix SpikeIn Experiment Data
    rda| rds
    ExpressionSet
  7339. SpikeInSubset::spikein133
    Subset of Affymetrix SpikeIn Experiment Data
    rda| rds
    AffyBatch
  7340. SpikeInSubset::spikein95
    Subset of Affymetrix SpikeIn Experiment Data
    rda| rds
    AffyBatch
  7341. spikeLI::conc133
    Concentration 95
    json| rda| rds
    numeric
  7342. spikeLI::conc95
    Concentration 95
    json| rda| rds
    numeric
  7343. spikeLI::hgu
    Selected Probe Set data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11452 x 9
  7344. spikeLI::SPIKE_IN
    Spike-in Probe-Set Names
    json| rda| rds
    character
  7345. spikeLI::SPIKE_IN95
    set of spike-in genes contained in the HGU95 dataset
    json| rda| rds
    character
  7346. spikeLI::SPIKE_INA
    Artificial Spike-in probesets
    json| rda| rds
    character
  7347. spikeLI::SPIKE_INB
    Bacteria Spike-in probeset names
    json| rda| rds
    character
  7348. spikeLI::SPIKE_INH
    Human Spike-in probe-set names
    json| rda| rds
    character
  7349. spiky::dedup
    spike-in counts for two samples, as a wide data.frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|26 x 3
  7350. spiky::genbank_mito
    various mitochondrial genomes sometimes used as endogenous spike-ins
    rda| rds
    DFrame
  7351. spiky::genomic_res
    A Granges object with genomic coverage from chr21q22, binned every 300bp for the genomic contigs then averaged across the bin. (In other words, the default output of scan_genomic_contigs or scan_genomic_bedpe, restricted to a small enough set of genomic regions to be practical for examples.) This represents what most users will want to generate from their own genomic BAMs or BEDPEs, and is used repeatedly in downstream examples throughout the package.
    rda| rds
    GRanges
  7352. spiky::phage
    lambda and phiX phage sequences, sometimes used as spike-ins
    rda| rds
    DFrame
  7353. spiky::spike
    spike-in contig properties for Sam's cfMeDIP spikes
    rda| rds
    DFrame
  7354. spiky::spike_cram_counts
    spike-in counts, as a long data.frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|312 x 3
  7355. spiky::spike_read_counts
    spike-in counts, as a long data.frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|52 x 3
  7356. spiky::spike_res
    A Granges object with spike-in sequence coverage, and summarized for each spike contig as (the default) 'max' coverage. (In other words, the default output of scan_spike_contigs or scan_spike_bedpe) This represents what most users will want to generate from their own spike-in BAMs or BEDPEs, and is used repeatedly in downstream examples throughout the package.
    rda| rds
    GRanges
  7357. spiky::ssb_res
    scan_spiked_bam results from a merged cfMeDIP CRAM file (chr22 and spikes)
    rda| rds
    CompressedGRangesList
  7358. spiky::testGR
    a test GRanges with UMI'ed genomic sequences used as controls
    rda| rds
    GRanges
  7359. spkTools::affy
    SpikeInExpressionSet of Affymetrix Spike-in Experiment Data
    rda| rds
    SpikeInExpressionSet
  7360. SplicingFactory::tcga_brca_luma_dataset
    TCGA Luminal A breast cancer dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1100 x 41
  7361. splineTimeR::TCsimData
    Simulated time-course gene expression data set
    rda| rds
    ExpressionSet
  7362. SPLINTER::acceptor.m
    acceptor.m
    csv| json| rda| rds
    matrix|4 x 15
  7363. SPLINTER::compatible_cds
    compatible_cds
    rda| rds
    list
  7364. SPLINTER::compatible_tx
    compatible_tx
    rda| rds
    list
  7365. SPLINTER::donor.m
    donor.m
    csv| json| rda| rds
    matrix|4 x 9
  7366. SPLINTER::pcr_result1
    pcr_result1
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 2
  7367. SPLINTER::primers
    primers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 28
  7368. SPLINTER::region_minus_exon
    region_minus_exon
    rda| rds
    CompressedGRangesList
  7369. SPLINTER::roi
    roi
    rda| rds
    list
  7370. SPLINTER::splice_data
    splice_data
    json| rda| rds
    list
  7371. SPLINTER::splice_fasta
    splice_fasta
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 2
  7372. SPLINTER::thecds
    thecds
    rda| rds
    CompressedGRangesList
  7373. SPLINTER::theexons
    theexons
    rda| rds
    CompressedGRangesList
  7374. SPLINTER::valid_cds
    valid_cds
    rda| rds
    CompressedGRangesList
  7375. SPLINTER::valid_tx
    valid_tx
    rda| rds
    CompressedGRangesList
  7376. SPONGE::ceRNA_interactions
    ceRNA interactions
    csv| xlsx| json| ndjson| rda| rds
    data.table|191 x 6
  7377. SPONGE::ensembl.df
    example potential central nodes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|68005 x 3
  7378. SPONGE::gene_expr
    Gene expression test data set
    csv| json| rda| rds
    matrix|364 x 25
  7379. SPONGE::mir_expr
    miRNA expression test data set
    csv| json| rda| rds
    matrix|364 x 50
  7380. SPONGE::mir_interactions
    miRNA / gene interactions
    json| rda| rds
    list
  7381. SPONGE::mircode_ensg
    mircode predicted miRNA gene interactions
    csv| json| rda| rds
    matrix|50665 x 186
  7382. SPONGE::mircode_symbol
    mircode predicted miRNA gene interactions
    csv| json| rda| rds
    matrix|47458 x 186
  7383. SPONGE::precomputed_cov_matrices
    covariance matrices under the null hypothesis that sensitivity correlation is zero
    json| rda| rds
    list
  7384. SPONGE::precomputed_null_model
    A null model for testing purposes
    json| rda| rds
    list
  7385. SPONGE::targetscan_ensg
    targetscan predicted miRNA gene interactions
    csv| json| rda| rds
    matrix|12262 x 0
  7386. SPONGE::targetscan_symbol
    targetscan predicted miRNA gene interactions
    csv| json| rda| rds
    matrix|12238 x 0
  7387. SPONGE::test_cancer_gene_expr
    example test expression data for spongEffects
    csv| json| rda| rds
    matrix|1961 x 95
  7388. SPONGE::test_cancer_metadata
    example test sample meta data for spongEffects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|95 x 39
  7389. SPONGE::test_cancer_mir_expr
    example test miRNA data for spongEffects
    csv| json| rda| rds
    matrix|215 x 95
  7390. SPONGE::train_cancer_gene_expr
    example training expression data for spongEffects
    csv| json| rda| rds
    matrix|1961 x 96
  7391. SPONGE::train_cancer_metadata
    example training sample meta data for spongEffects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 39
  7392. SPONGE::train_cancer_mir_expr
    example training miRNA data for spongEffects
    csv| json| rda| rds
    matrix|215 x 96
  7393. SPONGE::train_ceRNA_interactions
    example train ceRNA interactions for spongEffects
    csv| xlsx| json| ndjson| rda| rds
    data.frame|44759 x 8
  7394. SPONGE::train_genes_miRNA_candidates
    example candidate genes for miRNA filtering
    json| rda| rds
    list
  7395. SPONGE::train_network_centralities
    example train network centralities for spongEffects
    csv| xlsx| json| ndjson| rda| rds
    data.table|259 x 5
  7396. SpotClean::mbrain_raw
    Example 10x Visium spatial data: raw count matrix
    rda| rds
    dgCMatrix
  7397. SpotSweeper::biased_spots
    Biased Spots Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 3
  7398. SpotSweeper::DLPFC_artifact
    human DLPFC dataset with a technical artifact (hangnail).
    rda| rds
    SpatialExperiment
  7399. spqnData::gtex.4k
    Example data for the spqn package.
    rda| rds
    RangedSummarizedExperiment
  7400. SPsimSeq::scNGP.data
    Neuroblastoma NGP cells single-cell RNA-seq.
    rda| rds
    SingleCellExperiment
  7401. SPsimSeq::zhang.data.sub
    Neuroblastoma bulk RNA-seq data retrieved from Zhang et (2015).
    json| rda| rds
    list
  7402. sRACIPE::allTypesDemoCircuit
    A circuit with every interaction type for simulations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 3
  7403. sRACIPE::cellCycle
    A circuit for modeling the yeast cell cycle
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38 x 3
  7404. sRACIPE::configData
    Configuration Data
    json| rda| rds
    list
  7405. sRACIPE::CoupledToggleSwitchSA
    Five coupled toggle switches
    csv| xlsx| json| ndjson| rda| rds
    data.frame|18 x 3
  7406. sRACIPE::demoCircuit
    A toggle switch circuit for demonstrations
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 3
  7407. sRACIPE::EMT1
    A circuit for epithelial to mesenchymal transition
    csv| xlsx| json| ndjson| rda| rds
    data.frame|59 x 3
  7408. sRACIPE::EMT2
    A circuit for epithelial to mesenchymal transition including microRNAs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|82 x 3
  7409. sRACIPE::repressilator
    A loop motif for demonstrating limit cycles in gene expression
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3 x 3
  7410. sSeq::countsTable
    An Example Simulation Data
    csv| json| rda| rds
    matrix|10000 x 2
  7411. sSeq::countsTable
    An Example Simulation Data
    csv| json| rda| rds
    matrix|29516 x 4
  7412. sSeq::countsTable
    An Example Simulation Data
    csv| json| rda| rds
    matrix|52580 x 4
  7413. sSeq::countsTable
    An Example Simulation Data
    csv| json| rda| rds
    matrix|10453 x 6
  7414. ssize::exp.sd
    Example baseline variability for gene expression experiment
    json| rda| rds
    numeric
  7415. sSNAPPY::gsAnnotation_df
    gsAnnotation_df: Categorization of KEGG pathways used for community annotation
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|549 x 2
  7416. sSNAPPY::logCPM_example
    logCPM_example: Normalised logCPM of patient-derived explant models obtained from 5 ER-positive primamry breast cancer tumours (GSE80098)
    csv| json| rda| rds
    matrix|7672 x 15
  7417. sSNAPPY::metadata_example
    metadata_example: Sample metadata for malignant breast cancer tumours PDE from 5 ER+ breast cancer tumour (GSE80098)
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|15 x 4
  7418. ssPATHS::expected_score_output
    Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 2
  7419. ssPATHS::gene_weights_reference
    Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia
    csv| xlsx| json| ndjson| rda| rds
    data.frame|34 x 2
  7420. ssPATHS::new_samp_df
    Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 27
  7421. ssPATHS::tcga_expr_df
    Gene Expression Values for PDAC Cancer Cell Lines exposed to Hypoxia
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9461 x 54
  7422. ssrch::docset_cancer68
    DocSet instance with metadata from 68 cancer studies
    rda| rds
    DocSet
  7423. ssrch::study_publ_dates
    publication dates for 6000 SRA transcriptome studies
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6212 x 2
  7424. ssrch::titles68
    titles for 68 cancer studies
    json| rda| rds
    character
  7425. ssrch::urls68
    pubmed URLs for subset of 68 cancer studies
    json| rda| rds
    character
  7426. ssviz::counts
    counts data
    json| rda| rds
    numeric
  7427. ssviz::ctrlbam
    ctrlbam data
    rda| rds
    DFrame
  7428. ssviz::pctrlbam
    pctrlbam data
    rda| rds
    DFrame
  7429. ssviz::ptreatbam
    ptreatbam data
    rda| rds
    DFrame
  7430. ssviz::treatbam
    treatbam data
    rda| rds
    DFrame
  7431. stageR::esetProstate
    Transcript-level abundance estimates in 14 Chinese prostate cancer patients
    rda| rds
    ExpressionSet
  7432. stageR::hammer.eset
    Hammer dataset
    rda| rds
    ExpressionSet
  7433. standR::dkd_spe_subset
    Description of the standR example datasets
    rda| rds
    SpatialExperiment
  7434. STATegRa::Block1
    STATegRa data
    csv| json| rda| rds
    matrix|1740 x 169
  7435. STATegRa::Block1.PCA
    STATegRa data
    csv| json| rda| rds
    matrix|600 x 0
  7436. STATegRa::Block2
    STATegRa data
    csv| json| rda| rds
    matrix|443 x 169
  7437. STATegRa::Block2.PCA
    STATegRa data
    csv| json| rda| rds
    matrix|300 x 0
  7438. STATegRa::ed
    STATegRa data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|169 x 1
  7439. STATegRa::ed.PCA
    STATegRa data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|169 x 1
  7440. STATegRa::mapdata
    STATegRa data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7082 x 2
  7441. STATegRa::TCGA_BRCA_Data
    STATegRa data
    rda| rds
    list
  7442. Statial::kerenKontextual
    Kontextual results from kerenSCE
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16000 x 6
  7443. Statial::kerenSCE
    MIBI-TOF Breast cancer intensities
    rda| rds
    SingleCellExperiment
  7444. STRINGdb::diff_exp_example1
    example of microarray data (data processed from GEO GSE9008)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20861 x 3
  7445. STRINGdb::interactions_example
    example of a protein-protein interactions sorted data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|70000 x 3
  7446. Structstrings::dbs
    Structstrings example data
    rda| rds
    DotBracketStringSet
  7447. Structstrings::nseq
    Structstrings example data
    rda| rds
    DNAStringSet
  7448. SubCellBarCode::hcc827Ctrl
    HCC827 Control Cell Line
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10480 x 10
  7449. SubCellBarCode::hcc827CtrlPSMCount
    Minimum PSM Count in HCC827Ctrl Cell Line.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10480 x 2
  7450. SubCellBarCode::hcc827exon
    HCC827 Control Exon Cell Line
    csv| xlsx| json| ndjson| rda| rds
    data.frame|600 x 12
  7451. SubCellBarCode::hcc827GEF
    Gefitinib treated HCC827 Cell Line
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10398 x 10
  7452. SubCellBarCode::hcc827GEFClass
    Gefitinib treated HCC827 Cell Line Classification
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10398 x 3
  7453. SubCellBarCode::hcc827GefPSMCount
    Minimum PSM Count in HCC827 Gefitinib Cell Line.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10398 x 2
  7454. SubCellBarCode::markerProteins
    Marker Proteins Source
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3365 x 8
  7455. SubcellularSpatialData::tx_small
    Sample annotated sub-cellular localised spatial 'omics dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100000 x 13
  7456. subSeq::hammer
    ExpressionSet results from Hammer et al 2010
    rda| rds
    ExpressionSet
  7457. subSeq::ss
    Subsampling results using the hammer dataset
    csv| xlsx| json| ndjson| rda| rds
    subsamples|135189 x 9
  7458. SUITOR::plotData
    Example data for plotting
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 3
  7459. SUITOR::results
    suitor return object
    json| rda| rds
    list
  7460. SUITOR::SimData
    Data for examples
    csv| json| rda| rds
    matrix|96 x 300
  7461. Summix::ancestryData
    ancestryData
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1000 x 10
  7462. SurfR::countData
    countData
    csv| json| rda| rds
    matrix|2500 x 4
  7463. SurfR::enrichedList
    enrichedList
    json| rda| rds
    list
  7464. SurfR::ind_deg
    ind_deg
    csv| json| rda| rds
    list
  7465. SurfR::metadata
    metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 3
  7466. survClust::simdat
    Simulated dataset with 3-class solution
    csv| json| rda| rds
    list
  7467. survClust::simsurvdat
    Simulated survival dataset with accompanying 'simdat'
    csv| json| rda| rds
    matrix|150 x 2
  7468. survClust::uvm_dat
    TCGA UVM Mutation and Copy Number datasets
    json| rda| rds
    list
  7469. survClust::uvm_survClust_cv.fit
    survClust cv.survclust output of integrated TCGA UVM Mutation and Copy Number datasets.
    json| rda| rds
    list
  7470. survClust::uvm_survdat
    TCGA UVM Clinical file
    csv| json| rda| rds
    matrix|80 x 2
  7471. survcomp::mainz7g
    Subset of MAINZ dataset containing gene expression, annotations and clinical data.
    rda| rds
    ExpressionSet
  7472. survcomp::nki7g
    Subset of NKI dataset containing gene expression, annotations and clinical data.
    rda| rds
    ExpressionSet
  7473. survcomp::transbig7g
    Subset of the TRANSBIG dataset containing gene expression, annotations and clinical data.
    rda| rds
    ExpressionSet
  7474. survcomp::unt7g
    Subset of UNT dataset containing gene expression, annotations and clinical data.
    rda| rds
    ExpressionSet
  7475. survcomp::upp7g
    Subset of UPP dataset containing gene expression, annotations and clinical data.
    rda| rds
    ExpressionSet
  7476. survcomp::vdx7g
    Subset of VDX dataset containing gene expression, annotations and clinical data.
    rda| rds
    ExpressionSet
  7477. SVM2CRMdata::CD4_matrixInputSVMbin100window1000
    Histone modification map from CD4
    csv| xlsx| rda| rds
    data.frame|123625 x 0
  7478. SVM2CRMdata::train_negative
    Random genomic regions of ChIP-seq without enhancers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3224 x 85
  7479. SVM2CRMdata::train_positive
    ChIP-seq signal in correspondence of enhancers
    csv| xlsx| json| ndjson| rda| rds
    data.frame|517 x 85
  7480. SVP::CancerSEAEnsemble
    The Gene List of Cancer Single-cell State Atlas (CancerSEA)
    json| rda| rds
    list
  7481. SVP::CancerSEASymbol
    The Gene List of Cancer Single-cell State Atlas (CancerSEA)
    json| rda| rds
    list
  7482. SVP::CellCycle.Hs
    the Cell Cycle gene set
    json| rda| rds
    list
  7483. SVP::hpda_spe_cell_dec
    an example of result of runSGSA by extracting with gsvaExp
    rda| rds
    SpatialExperiment
  7484. SVP::sceSubPbmc
    a subset data of pbmck3 from SeuratData
    rda| rds
    SingleCellExperiment
  7485. SVP::SenMayoSymbol
    A gene set identifies senescent cells and predicts senescence-associated pathways across tissues
    csv| json| rda| rds
    list
  7486. SwarnSeq::SpikeInData
    Spike-in counts data for the SwarnSeqToyData.
    rda| rds
    SingleCellExperiment
  7487. SwarnSeq::SwarnSeqToyData
    A test scRNA-seq Real Dataset for SwarnSeq
    rda| rds
    SingleCellExperiment
  7488. SWATH2stats::data
    Testing dataset from OpenSWATH.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|38272 x 13
  7489. SWATH2stats::MSstats_data
    Testing dataset in MSstats format.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 11
  7490. SWATH2stats::OpenSWATH_data
    Testing dataset from OpenSWATH.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2369 x 58
  7491. SWATH2stats::Study_design
    A table containing the meta-data defining the study design of the OpenSWATH data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 4
  7492. swfdr::BMI_GIANT_GWAS_sample
    Subset of SNPs from meta-analysis of BMI GWAS study.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|50000 x 9
  7493. swfdr::journals_pVals
    P-values from abstracts from articles in 5 biomedical journals (American Journal of Epidemiology, BMJ, JAMA, Lancet, New England Journal of Medicine), over 11 years (2000-2010).
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|15653 x 5
  7494. switchBox::matTesting
    Gene expression matrix for test set data
    csv| json| rda| rds
    matrix|70 x 307
  7495. switchBox::matTraining
    Gene expression matrix for training set data
    csv| json| rda| rds
    matrix|70 x 78
  7496. switchBox::testingGroup
    Testing set phenotypes
    json| rda| rds
    factor
  7497. switchBox::trainingGroup
    Training set phenotypes
    json| rda| rds
    factor
  7498. switchde::ex_pseudotime
    Synthetic gene pseudotimes
    json| rda| rds
    array
  7499. switchde::synth_gex
    Synthetic gene expression matrix
    csv| json| rda| rds
    matrix|12 x 100
  7500. synergyfinder::mathews_screening_data
    A high-throughput drug combination screening data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|72 x 8
  7501. synergyfinder::NCATS_screening_data
    A high-throughput 3 drug combination screening data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2400 x 11
  7502. synergyfinder::ONEIL_screening_data
    A high-throughput 2 drugs combination screening data with replication
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 8
  7503. SynExtend::BuiltInEnsembles
    Pretrained EvoWeaver Ensemble Models
    rda| rds
    list
  7504. SynExtend::ExampleStreptomycesData
    Example EvoWeaver Input Data from _Streptomyces_ Species
    rda| rds
    list
  7505. SynExtend::genecalls
    Example genecall data
    rda| rds
    list
  7506. SynExtend::Generic
    Model for predicting PID based on k-mer statistics
    rda| rds
    glm
  7507. SynExtend::init_pairs
    Example genecall data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|493 x 17
  7508. SynExtend::linked_features
    Example genecall data
    rda| rds
    LinkedPairs|3 x 3
  7509. SynExtend::syn
    Example genecall data
    rda| rds
    Synteny|3 x 3
  7510. synlet::example_dt
    Synthetic lethal RNAi screen example data.
    csv| xlsx| json| ndjson| rda| rds
    data.table|4320 x 8
  7511. syntenet::angiosperm_phylogeny
    Microsynteny-based angiosperm phylogeny.
    rda| rds
    phylo
  7512. syntenet::annotation
    Filtered genome annotation for Ostreococcus sp. species
    rda| rds
    CompressedGRangesList
  7513. syntenet::blast_list
    List of data frames containing BLAST-like tabular output
    csv| json| rda| rds
    list
  7514. syntenet::clusters
    Synteny network clusters of BUSCO genes for 25 eudicot species
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32653 x 2
  7515. syntenet::edges
    Synteny network of Ostreococcus genomes represented as an edge list
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1064 x 2
  7516. syntenet::network
    Synteny network of BUSCO genes for 25 eudicot species
    csv| xlsx| json| ndjson| rda| rds
    data.frame|226677 x 2
  7517. syntenet::proteomes
    Filtered proteomes of Ostreococcus sp. species
    rda| rds
    list
  7518. syntenet::scerevisiae_annot
    Genome annotation of the yeast species S. cerevisiae
    rda| rds
    list
  7519. syntenet::scerevisiae_diamond
    Intraspecies DIAMOND output for S. cerevisiae
    csv| json| rda| rds
    list
  7520. tadar::chr1_genes
    Genomic feature example data
    rda| rds
    GRanges
  7521. tadar::chr1_tt
    Differential expression example data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|716 x 5
  7522. TADCompare::GM12878.40kb.raw.chr2
    A subset of chomosome 2 contact matrix, GM12878 cell line.
    csv| json| rda| rds
    matrix|1001 x 1001
  7523. TADCompare::IMR90.40kb.raw.chr2
    A subset of chomosome 2 contact matrix, IMR90 cell line.
    csv| json| rda| rds
    matrix|1001 x 1001
  7524. TADCompare::rao_chr22_prim
    Chromosome 22 combined intrachromosomal primary contact matrix from Rao et al. 2014.
    csv| json| rda| rds
    matrix|704 x 704
  7525. TADCompare::rao_chr22_rep
    Chromosome 22 combined intrachromosomal replicate contact matrix from Rao et al. 2014.
    csv| json| rda| rds
    matrix|704 x 704
  7526. TADCompare::time_mats
    Chromosome 22 time-varying contact matrices from Rao et al. 2017.
    csv| json| rda| rds
    list
  7527. TAPseq::bone_marrow_genex
    Mouse bone marrow 10x data
    rda| rds
    Seurat
  7528. TAPseq::chr11_genes
    Chromosome 11 genes
    rda| rds
    GRanges
  7529. TAPseq::chr11_polyA_sites
    Chromosome 11 polyA sites
    rda| rds
    GRanges
  7530. TAPseq::chr11_primers
    Chromosome 11 primers
    rda| rds
    TsIOList
  7531. TAPseq::chr11_truncated_txs
    Chromosome 11 truncated transcripts
    rda| rds
    CompressedGRangesList
  7532. TAPseq::chr11_truncated_txs_seq
    Chromosome 11 truncated transcript sequences
    rda| rds
    DNAStringSet
  7533. target::real_peaks
    AR peaks in LNCaP cell line
    rda| rds
    GRanges
  7534. target::real_transcripts
    Differential expression of DHT treated LNCaP cell line
    rda| rds
    GRanges
  7535. target::sim_peaks
    Simulated peaks
    rda| rds
    GRanges
  7536. target::sim_transcripts
    Simulated transcripts The transcripts chromosome 1 of the mm10 mouse genome with randomly singed statistics assigned to each.
    rda| rds
    GRanges
  7537. TargetDecoy::ModSwiss
    Swiss-Prot MS-GF+ data
    rda| rds
    mzID
  7538. TargetDecoy::ModSwissXT
    Swiss-Prot X!Tandem data
    rda| rds
    mzID
  7539. TargetSearch::corRI
    Example GC-MS data for TargetSearch Package
    csv| json| rda| rds
    matrix|12 x 15
  7540. TargetSearch::metabProfile
    Example GC-MS data for TargetSearch Package
    rda| rds
    tsProfile
  7541. TargetSearch::peakData
    Example GC-MS data for TargetSearch Package
    rda| rds
    tsMSdata
  7542. TargetSearch::refLibrary
    Example GC-MS data for TargetSearch Package
    rda| rds
    tsLib
  7543. TargetSearch::RImatrix
    Example GC-MS data for TargetSearch Package
    csv| json| rda| rds
    matrix|3 x 15
  7544. TargetSearch::rimLimits
    Class for representing retention index markers
    rda| rds
    tsRim
  7545. TargetSearch::sampleDescription
    Example GC-MS data for TargetSearch Package
    rda| rds
    tsSample
  7546. TaxSEA::NCBI_ids
    NCBI IDs Dataset
    json| rda| rds
    list
  7547. TaxSEA::TaxSEA_db
    TaxSEA Database A dataset containing taxon sets. Each item in the list is a taxon set, and each member within a taxon set is a taxon.
    json| rda| rds
    list
  7548. TaxSEA::TaxSEA_test_data
    TaxSEA Test Data
    json| rda| rds
    numeric
  7549. TBSignatureProfiler::common_sigAnnotData
    Annotation information for published TB signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80 x 3
  7550. TBSignatureProfiler::COVIDsignatures
    A list of published/pre-print COVID-19 signatures.
    json| rda| rds
    list
  7551. TBSignatureProfiler::OriginalTrainingData
    Discovery datasets for corresponding gene signatures.
    rda| rds
    list
  7552. TBSignatureProfiler::sigAnnotData
    Annotation information for published TB signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|80 x 3
  7553. TBSignatureProfiler::TB_hiv
    An example TB dataset with TB/HIV data.
    rda| rds
    SummarizedExperiment
  7554. TBSignatureProfiler::TB_indian
    An example TB dataset with Indian population data.
    rda| rds
    SummarizedExperiment
  7555. TBSignatureProfiler::TBcommon
    A list of published TB signatures, using author-given names.
    json| rda| rds
    list
  7556. TBSignatureProfiler::TBsignatures
    A list of published TB signatures.
    json| rda| rds
    list
  7557. TBSignatureProfiler::TBsignaturesSplit
    Up/Down-regulated genes information for selected TB signatures.
    csv| json| rda| rds
    list
  7558. TCC::arab
    Arabidopsis RNA-Seq data set
    csv| json| rda| rds
    matrix|26222 x 6
  7559. TCC::hypoData
    A simulation dataset for comparing two-group tag count data, focusing on RNA-seq
    csv| json| rda| rds
    matrix|1000 x 6
  7560. TCC::hypoData_mg
    A simulation dataset for comparing three-group tag count data, focusing on RNA-seq
    csv| json| rda| rds
    matrix|1000 x 9
  7561. TCC::hypoData_ts
    A sample microarray data for detecting tissue-specific patterns.
    csv| json| rda| rds
    matrix|8 x 10
  7562. TCC::nakai
    DNA microarray data set
    csv| json| rda| rds
    matrix|31099 x 8
  7563. TCGAbiolinks::bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf
    TCGA CHOL MAF
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|3555 x 34
  7564. TCGAbiolinks::chol_maf
    TCGA CHOL MAF transformed to maftools object
    rda| rds
    MAF
  7565. TCGAbiolinks::clinical.biotab
    A list of data frames with clinical data parsed from XML (code in vignettes)
    json| rda| rds
    list
  7566. TCGAbiolinks::dataBRCA
    TCGA data matrix BRCA
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20530 x 10
  7567. TCGAbiolinks::dataDEGsFiltLevel
    TCGA data matrix BRCA DEGs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3649 x 6
  7568. TCGAbiolinks::dataREAD
    TCGA data SummarizedExperiment READ
    rda| rds
    RangedSummarizedExperiment
  7569. TCGAbiolinks::dataREAD_df
    TCGA data matrix READ
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20531 x 2
  7570. TCGAbiolinks::DE_PCBC_stemSig
    A numeric vector with SC-derived definitive endoderm (DE) signature trained on PCBC's dataset
    json| rda| rds
    numeric
  7571. TCGAbiolinks::EB_PCBC_stemSig
    A numeric vector with stem cell (SC)-derived embryoid bodies (EB) signature trained on PCBC's dataset
    json| rda| rds
    numeric
  7572. TCGAbiolinks::ECTO_PCBC_stemSig
    A numeric vector with SC-derived ectoderm (ECTO) signature trained on PCBC's dataset
    json| rda| rds
    numeric
  7573. TCGAbiolinks::gbm.exp.harmonized
    A RangedSummarizedExperiment two samples with gene expression data from vignette aligned against hg38
    rda| rds
    RangedSummarizedExperiment
  7574. TCGAbiolinks::gbm.exp.legacy
    A RangedSummarizedExperiment two samples with gene expression data from vignette aligned against hg19
    rda| rds
    RangedSummarizedExperiment
  7575. TCGAbiolinks::geneInfo
    geneInfo for normalization of RNAseq data
    csv| json| rda| rds
    matrix|20531 x 3
  7576. TCGAbiolinks::geneInfoHT
    geneInfoHT for normalization of HTseq data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|68016 x 2
  7577. TCGAbiolinks::MESO_PCBC_stemSig
    A numeric vector with SC-derived mesoderm (MESO) signature trained on PCBC's dataset
    json| rda| rds
    numeric
  7578. TCGAbiolinks::met.gbm.27k
    A DNA methylation RangedSummarizedExperiment for 8 samples (only first 20 probes) aligned against hg19
    rda| rds
    RangedSummarizedExperiment
  7579. TCGAbiolinks::msi_results
    MSI data for two samples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 4
  7580. TCGAbiolinks::SC_PCBC_stemSig
    A numeric vector with stem cell-like signature trained on PCBC's dataset
    json| rda| rds
    numeric
  7581. TCGAbiolinks::TabSubtypesCol_merged
    TCGA samples with their Pam50 subtypes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4768 x 3
  7582. TCGAbiolinks::tabSurvKMcompleteDEGs
    tabSurvKMcompleteDEGs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|200 x 7
  7583. TCGAbiolinks::Tumor.purity
    TCGA samples with their Tumor Purity measures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|9364 x 7
  7584. TCGAcrcmiRNA::TCGAmirna
    miRNA profile of colorectal cancer TCGA
    rda| rds
    ExpressionSet
  7585. TCGAcrcmRNA::TCGAmrna
    mrna profile of colorectal cancer TCGA
    rda| rds
    ExpressionSet
  7586. TCGAutils::clinicalNames
    Clinical dataset names in TCGA
    rda| rds
    CompressedCharacterList
  7587. TCGAutils::diseaseCodes
    TCGA Cancer Disease Codes Table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37 x 4
  7588. TCGAutils::sampleTypes
    Barcode Sample Type Table
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22 x 3
  7589. TCGAWorkflowData::exp
    A gene expression matrix for 10 GBM and 10 LGG samples prepared for the creation of an ELMER object.
    rda| rds
    RangedSummarizedExperiment
  7590. TCGAWorkflowData::exp_gbm
    A gene expression matrix with 20 GBM samples
    rda| rds
    RangedSummarizedExperiment
  7591. TCGAWorkflowData::exp_lgg
    A gene expression matrix with 20 LGG samples
    rda| rds
    RangedSummarizedExperiment
  7592. TCGAWorkflowData::gbm.samples
    Identifiers for the 10 GBM samples in the ELMER objects
    json| rda| rds
    character
  7593. TCGAWorkflowData::genes
    A data frame object with gene information (hg19)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60482 x 4
  7594. TCGAWorkflowData::genes_GR
    A GRanges object with gene information (hg19)
    rda| rds
    GRanges
  7595. TCGAWorkflowData::gistic_allbygene
    A subset of GBM GISTIC2 results, which is used to identify genes targeted by somatic copy-number alterations (SCNAs) From: GDAC firehose, downloaded with RTCGAtoolbox
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24776 x 0
  7596. TCGAWorkflowData::gistic_thresholedbygene
    A subset of GBM GISTIC2 results, which is used to identify genes targeted by somatic copy-number alterations (SCNAs) From: GDAC firehose, downloaded with RTCGAtoolbox
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24776 x 0
  7597. TCGAWorkflowData::histone.marks
    histone marks specific for brain tissue from the Roadmap database.
    rda| rds
    list
  7598. TCGAWorkflowData::lgg.samples
    Identifiers for the 10 LGG samples in the ELMER objects
    json| rda| rds
    character
  7599. TCGAWorkflowData::maf
    Merged LGG and GBM GDC MAF files from GDC workflow: Aliquot Ensemble Somatic Variant Merging and Masking
    csv| xlsx| json| ndjson| rda| rds
    data.frame|87957 x 141
  7600. TCGAWorkflowData::met
    A SummarizedExperiment containing TCGA data: DNA methylation platform 450K chromossome 9 for 10 LGG samples and 10 GBM samples
    rda| rds
    RangedSummarizedExperiment
  7601. TCGAWorkflowData::met
    A SummarizedExperiment containing TCGA data: DNA methylation platform 450K chromossome 9 for 10 LGG samples and 10 GBM samples
    rda| rds
    RangedSummarizedExperiment
  7602. TCGAWorkflowData::tmp.biogrid
    Biogrid information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1379810 x 24
  7603. TCseq::countsTable
    An example read Counts table
    csv| json| rda| rds
    matrix|2751 x 12
  7604. TCseq::experiment
    An example experiment design without BAM file infomration
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 3
  7605. TCseq::experiment_BAMfile
    An example experiment design with BAM file infomration
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 4
  7606. TCseq::genomicIntervals
    An example reference genomic regions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2751 x 4
  7607. TCseq::tca_ATAC
    An example TCA object
    csv| rda| rds
    TCA
  7608. TEKRABber::ctInputDE
    Input expression data of gene/TE for differentially expressed analysis within same species
    csv| json| rda| rds
    list
  7609. TEKRABber::fetchDataHmChimp
    Example output comparing human and chimpanzee data using orhtologScale()
    json| rda| rds
    list
  7610. TEKRABber::hg38_panTro6_rmsk
    Repeatmasker track annotations with human and chimpanzee
    csv| xlsx| json| ndjson| rda| rds
    grouped_df|12550 x 4
  7611. TEKRABber::speciesCounts
    Gene/TE expression data from human/chimpanzee brain RNA-seq
    csv| json| rda| rds
    list
  7612. TENET::humanTranscriptionFactorDb
    Human transcription factor database
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2765 x 28
  7613. TENET::humanTranscriptionFactorList
    Human transcription factor list
    json| rda| rds
    character
  7614. tenXplore::CellTypes
    cellTypes: data.frame with ids and terms
    rda| rds
    TermSet
  7615. tenXplore::tenx500
    tenx500: serialized full SummarizedExperiment for demonstration
    rda| rds
    SummarizedExperiment
  7616. TFARM::DELTA
    Contains the delta variations of support, confidence and lift.
    csv| json| rda| rds
    list
  7617. TFARM::I_c_2
    Contains the mean Importance Index of pairs of transcription factors which are present in at least one association rule.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|67 x 2
  7618. TFARM::IMP
    Contains the mean Importance Index of each co-regulator.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 4
  7619. TFARM::imp_FOSL2
    Contains the set of Importance Indexes of FOSL2 in a given set of rules.
    json| rda| rds
    list
  7620. TFARM::IMP_Z
    Contains the Importance Index associated with each co-regulator which is present in at least one association rule.
    json| rda| rds
    list
  7621. TFARM::MCF7_chr1
    Contains genomic regions in the first chromosome of the MCF-7 human breast adenocarcinoma cell line at the ranges side, and the presence indexes of transcription factors in such regions at the metadata side.
    rda| rds
    GRanges
  7622. TFARM::p_TFs
    Contains co-regulators found in at least one association rule.
    json| rda| rds
    character
  7623. TFARM::r_FOSL2
    Represents an example of rulesTF output, i.e. the subset of rules whose left-hand-sides contain FOSL2, and the correspondent quality measures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28 x 5
  7624. TFARM::r_noFOSL2
    Represents an example of rulesTF0 output, where the presence of FOSL2 was replaced with its absence.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28 x 5
  7625. TFARM::r_TEAD4
    Contains the association rules for the prediction of the presence of the transcription factor TEAD4 in the considered genomic regions, i.e., with TEAD4 in the right-hand-side of the association rules.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 6
  7626. TFARM::TF_Imp
    Contains the candidate co-regulators and the number of rules associated with them.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 3
  7627. TFBSTools::MA0003.2
    Some example PFM matrices.
    rda| rds
    PFMatrix
  7628. TFBSTools::MA0004.1
    Some example PFM matrices.
    rda| rds
    PFMatrix
  7629. TFBSTools::MA0043
    Some example PFM matrices.
    rda| rds
    PFMatrix
  7630. TFBSTools::MA0048
    Some example PFM matrices.
    rda| rds
    PFMatrix
  7631. TFEA.ChIP::ARNT.metadata
    Metadata data frame
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 7
  7632. TFEA.ChIP::ARNT.peaks.bed
    ChIP-Seq dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2140 x 4
  7633. TFEA.ChIP::chip_metadata
    ChIP-seq transcription factor metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1267 x 3
  7634. TFEA.ChIP::ChIPDB
    TF-Gene List
    json| rda| rds
    list
  7635. TFEA.ChIP::DnaseHS_db
    DHS databse
    rda| rds
    GRanges
  7636. TFEA.ChIP::Entrez.gene.IDs
    List of Entrez Gene IDs
    json| rda| rds
    character
  7637. TFEA.ChIP::Genes.Upreg
    List of Entrez Gene IDs
    json| rda| rds
    character
  7638. TFEA.ChIP::gr.list
    List of one ChIP-Seq dataset
    rda| rds
    list
  7639. TFEA.ChIP::GSEA.result
    Output of the function GSEA.run from the TFEA.ChIP package
    json| rda| rds
    list
  7640. TFEA.ChIP::hypoxia
    RNA-Seq experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17527 x 4
  7641. TFEA.ChIP::hypoxia_DESeq
    RNA-Seq experiment
    rda| rds
    DESeqResults
  7642. TFEA.ChIP::log2.FC
    List of Entrez Gene IDs
    json| rda| rds
    numeric
  7643. TFEA.ChIP::MetaData
    TF-gene binding DB metadata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8103 x 6
  7644. TFEA.ChIP::TF_ranking2
    Meta-analysis ranking of transcription factors
    rda| rds
    list
  7645. TFHAZ::base_dense_w_10
    Contains an output of the dense_zones function.
    rda| rds
    list
  7646. TFHAZ::Ishikawa
    Contains genomic regions of transcription factors at the ranges side and the name of the transcription factors at the metadata side.
    rda| rds
    GRanges
  7647. TFHAZ::reg_dense_w_10
    Contains an output of the dense_zones function.
    rda| rds
    list
  7648. TFHAZ::TF_acc_w_0
    Contains an output of the accumulation function.
    rda| rds
    list
  7649. TFHAZ::TF_dense_w_0
    Contains an output of the dense_zones function.
    rda| rds
    list
  7650. TFHAZ::TF_dense_w_10
    Contains an output of the dense_zones function.
    rda| rds
    list
  7651. TFHAZ::TF_dense_w_100
    Contains an output of the dense_zones function.
    rda| rds
    list
  7652. TFHAZ::TF_dense_w_1000
    Contains an output of the dense_zones function.
    rda| rds
    list
  7653. TFHAZ::TF_dense_w_10000
    Contains an output of the dense_zones function.
    rda| rds
    list
  7654. TFutils::cisbpTFcat
    cisbpTFcat: data.frame with information on CISBP TFs for human, retained for reproducibility support; see cisbpTFcat_2.0 for a more recent catalog
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7592 x 28
  7655. TFutils::cisbpTFcat_2.0
    cisbpTFcat_2.0: data.frame with information on CISBP TFs for human, described in PMID 31133749
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5861 x 28
  7656. TFutils::demo_fimo_granges
    a list of GRanges instances with TF FIMO scores returned by 'fimo_granges'
    rda| rds
    list
  7657. TFutils::encode690
    encode690: DataFrame extending AnnotationHub metadata about ENCODE cell line x TF ranges
    rda| rds
    DFrame
  7658. TFutils::fimo16
    fimo16: GenomicFiles instance to AWS S3-resident FIMO bed for 16 TFs
    rda| rds
    GenomicFiles
  7659. TFutils::fimoMap
    fimoMap: table with Mnnnn (motif PWM tags) and HGNC symbols for TFs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|689 x 2
  7660. TFutils::gwascat_hg19_chr17
    gwascat_hg19: GRanges of march 21 2018 EBI gwascat, limit to chr17
    rda| rds
    GRanges
  7661. TFutils::hocomoco.mono
    hocomoco.mono: data.frame with information on HOCOMOCO TFs for human
    csv| xlsx| json| ndjson| rda| rds
    data.frame|771 x 9
  7662. TFutils::hocomoco.mono.sep2018
    hocomoco.mono.sep2018: data.frame with information on HOCOMOCO TFs for human, Sept 2018 download
    csv| xlsx| json| ndjson| rda| rds
    data.frame|769 x 9
  7663. TFutils::lambert_snps
    lambert_snps is Table S3 of Lambert et al PMID 29425488
    csv| xlsx| json| ndjson| rda| rds
    data.frame|143864 x 6
  7664. TFutils::metadata_tf
    metadata_tf: list with metadata (motif_if and hgnc_symbol) about all the CISBP FIMO scan TF bed files
    csv| json| rda| rds
    list
  7665. TFutils::named_tf
    named_tf: named list with the names being the hgnc_symbol of the motif_id
    csv| json| rda| rds
    list
  7666. TFutils::seqinfo_hg19_chr17
    a Seqinfo instance for a chr17 in hg19
    rda| rds
    Seqinfo
  7667. TFutils::tfhash
    tfhash: data.frame with MSigDb TFs, TF targets as symbol or ENTREZ
    csv| xlsx| json| ndjson| rda| rds
    data.frame|164130 x 3
  7668. TFutils::tftColl
    tftColl: GSEABase GeneSetCollection for transcription factor targets
    rda| rds
    GeneSetCollection
  7669. TFutils::tftCollMap
    tftCollMap: data.frame with information on MSigDb TFs for human
    csv| xlsx| json| ndjson| rda| rds
    data.frame|615 x 3
  7670. TiDEomics::example_go
    'enrichGO_list()' output object for runnable examples
    rda| rds
    list
  7671. TiDEomics::example_net
    'run_WGCNA()' output object for runnable examples
    rda| rds
    list
  7672. TiDEomics::example_obj
    SummarizedExperiment object for runnable examples
    rda| rds
    SummarizedExperiment
  7673. TiDEomics::example_res_list
    'run_Trendy' output object for runnable examples
    json| rda| rds
    list
  7674. TiDEomics::tutorial_data
    Dataset for TiDEomics tutorial, expression matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 41
  7675. TiDEomics::tutorial_sample_info
    Dataset for TiDEomics tutorial, sample information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 5
  7676. tidybulk::tximeta_summarizeToGene_object
    Needed for tests tximeta_summarizeToGene_object, It is SummarizedExperiment from tximeta
    rda| rds
    RangedSummarizedExperiment
  7677. tidybulk::vignette_manuscript_signature_boxplot
    Needed for vignette vignette_manuscript_signature_boxplot
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|899 x 12
  7678. tidybulk::vignette_manuscript_signature_tsne
    Needed for vignette vignette_manuscript_signature_tsne
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|283 x 10
  7679. tidybulk::vignette_manuscript_signature_tsne2
    Needed for vignette vignette_manuscript_signature_tsne2
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|283 x 9
  7680. tidybulk::X_cibersort
    Cibersort reference
    csv| xlsx| json| ndjson| rda| rds
    data.frame|547 x 22
  7681. tidyCoverage::ac
    Example 'CoverageExperiment' and 'AggregatedCoverage' objects
    rda| rds
    AggregatedCoverage
  7682. tidyCoverage::ce
    Example 'CoverageExperiment' and 'AggregatedCoverage' objects
    rda| rds
    CoverageExperiment
  7683. tidyexposomics::tidyexposomics_example
    Example exposome multi-omics dataset
    json| rda| rds
    list
  7684. tidyFlowCore::metal_masterlist
    A character vector of CyTOF metal name patterns supported by tidyFlowCore
    json| rda| rds
    character
  7685. tidyprint::se_airway
    Example SummarizedExperiment dataset
    rda| rds
    SummarizedExperiment
  7686. tidySingleCellExperiment::cell_type_df
    Cell types of 80 PBMC single cells
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|80 x 2
  7687. tidySingleCellExperiment::pbmc_small
    pbmc_small
    rda| rds
    SingleCellExperiment
  7688. tidySingleCellExperiment::pbmc_small_nested_interactions
    Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|100 x 9
  7689. tidySpatialExperiment::demo_brush_data
    Demo brush data
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|30 x 3
  7690. tidySpatialExperiment::demo_select_data
    Demo select data
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|5 x 4
  7691. tidySummarizedExperiment::pasilla
    Read counts of RNA-seq samples of Pasilla knock-down by Brooks et al.
    rda| rds
    SummarizedExperiment
  7692. tidySummarizedExperiment::se
    Read counts of RNA-seq samples derived from Pasilla knock-down by Brooks et al.
    rda| rds
    RangedSummarizedExperiment
  7693. tidytof::ddpr_data
    CyTOF data from two samples: 5,000 B-cell lineage cells from a healthy patient and 5,000 B-cell lineage cells from a B-cell precursor Acute Lymphoblastic Leukemia (BCP-ALL) patient.
    csv| xlsx| json| ndjson| rda| rds
    tof_tbl|5000 x 21
  7694. tidytof::ddpr_metadata
    Clinical metadata for each patient sample in Good & Sarno et al. (2018).
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|73 x 12
  7695. tidytof::metal_masterlist
    A character vector of metal name patterns supported by tidytof.
    json| rda| rds
    character
  7696. tidytof::phenograph_data
    CyTOF data from 6,000 healthy immune cells from a single patient.
    csv| xlsx| json| ndjson| rda| rds
    tof_tbl|3000 x 25
  7697. tigre::drosophila_gpsim_fragment
    Fragment of 12 time point Drosophila embryonic development microarray gene expression time series
    rda| rds
    ExpressionTimeSeries
  7698. tigre::drosophila_mmgmos_fragment
    Fragment of 12 time point Drosophila embryonic development microarray gene expression time series
    rda| rds
    exprReslt
  7699. tilingArray::gffSub
    Example of a genomic feature object
    csv| xlsx| json| ndjson| rda| rds
    GenomeFeature|28 x 10
  7700. tilingArray::segnf
    Example of a segmentation output object
    rda| rds
    environment
  7701. timecourse::fruitfly
    Drosophila microarray time course data in Tomancak et al. (2002)
    csv| json| rda| rds
    matrix|2000 x 36
  7702. timecoursedata::shoemaker2015
    Time course transcriptomic from mouse lung tissues infected with influenza
    json| rda| rds
    list
  7703. timecoursedata::varoquaux2019leaf
    Time course transcriptomic data from leaf and root tissues exposed to drought stress
    json| rda| rds
    list
  7704. timecoursedata::varoquaux2019root
    Time course transcriptomic data from leaf and root tissues exposed to drought stress
    json| rda| rds
    list
  7705. timeOmics::timeOmics.simdata
    rda| rds
    list
  7706. TimerQuant::FRETdata
    FRET Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|33 x 2
  7707. TimerQuant::maturationData
    Maturation Data
    json| rda| rds
    array
  7708. TimerQuant::profileGradients
    Profile Gradients
    json| rda| rds
    array
  7709. TIN::geneAnnotation
    geneAnnotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22011 x 2
  7710. TIN::geneSets
    geneSets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1454 x 0
  7711. TIN::sampleSetFirmaScores
    sampleSetFirmaScores
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10000 x 16
  7712. TIN::sampleSetGeneSummaries
    sampleSetGeneSummaries
    csv| xlsx| json| ndjson| rda| rds
    data.frame|22011 x 16
  7713. TIN::splicingFactors
    A list of 280 splicing factor genes
    csv| xlsx| json| ndjson| rda| rds
    data.frame|280 x 2
  7714. tinesath1cdf::tinesath1cdf
    environment containing the location probe set membership mapping
    rda| rds
    environment
  7715. tinesath1probe::tinesath1probe
    Probe sequence for microarrays of type tinesath1.
    csv| xlsx| json| ndjson| rda| rds
    probetable|221802 x 6
  7716. TMixClust::best_clust_toy_obj
    TMixClust object containing the optimal clustering solution for the toy data with 3 clusters.
    rda| rds
    list
  7717. TMixClust::best_clust_yeast_obj
    TMixClust object containing the optimal clustering solution for the yeast data.
    rda| rds
    list
  7718. TMixClust::toy_data_df
    Simulated time-series gene expression data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|91 x 6
  7719. TOAST::beta_emp
    Simulated methylation 450K array data with related
    json| rda| rds
    list
  7720. TOAST::CBS_PBMC_array
    An example dataset for partial reference-free cell composition estimation from tissue gene expression
    json| rda| rds
    list
  7721. TOAST::RA_100samples
    An example dataset for cellular proportion estimation and multiple factor design
    json| rda| rds
    list
  7722. tomoda::zh.data
    A raw read count matrix of zebrafish injured heart.
    csv| json| rda| rds
    matrix|16495 x 40
  7723. tomoseqr::mask
    A matrix containing mask data.
    json| rda| rds
    array
  7724. tomoseqr::testx
    A data.frame object containing a simulated Tomo-seq data for x-axis sections.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4 x 51
  7725. tomoseqr::testy
    A data.frame object containing a simulated Tomo-seq data for y-axis sections.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4 x 51
  7726. tomoseqr::testz
    A data.frame object containing a simulated Tomo-seq data for z-axis sections.
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4 x 51
  7727. tomoseqr::tomoObj
    A tomoSeq object.
    rda| rds
    tomoSeq
  7728. TOP::TOP_data_binary
    A simulated binary data
    json| rda| rds
    list
  7729. topdownr::tds
    TopDownSet Example Data
    rda| rds
    TopDownSet
  7730. topGO::affyLib
    A toy example of a list of gene identifiers and the respective p-values
    json| rda| rds
    character
  7731. topGO::geneList
    A toy example of a list of gene identifiers and the respective p-values
    json| rda| rds
    numeric
  7732. topGO::GOdata
    Sample topGOdata and topGOresult objects
    rda| rds
    topGOdata
  7733. topGO::resultFisher
    Sample topGOdata and topGOresult objects
    rda| rds
    topGOresult
  7734. topGO::resultKS
    Sample topGOdata and topGOresult objects
    rda| rds
    topGOresult
  7735. topGO::topDiffGenes
    A toy example of a list of gene identifiers and the respective p-values
    json| rda| rds
    function
  7736. ToxicoGx::HCC_sig
    HCC_sig dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7158 x 2
  7737. ToxicoGx::TGGATESsmall
    TGGATESsmall dataset
    rda| rds
    ToxicoSet
  7738. TPP::hdacCCR_config
    The configuration table to analyze hdacCCR_data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2 x 11
  7739. TPP::hdacCCR_data
    TPP-CCR example dataset (replicates 1 and 2)
    json| rda| rds
    list
  7740. TPP::hdacTR_config
    The configuration table to analyze hdacTR_data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4 x 14
  7741. TPP::hdacTR_data
    TPP-TR example dataset.
    csv| json| rda| rds
    list
  7742. TPP::panobinostat_2DTPP_config
    The configuration table to analyze panobinostat_2DTPP_data.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 15
  7743. TPP::panobinostat_2DTPP_data
    2D-TPP-CCR example dataset
    csv| json| rda| rds
    list
  7744. TPP::resultTable
    Example of a TPP-TR result table.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|510 x 91
  7745. TPP::tppRefData
    Example of a reference dataset for 2D-TPP experiments.
    json| rda| rds
    list
  7746. TPP2D::config_tab
    Example config table for a import of a simulated 2D-TPP cell extract dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 14
  7747. TPP2D::raw_dat_list
    Example raw data for a subset of a simulated 2D-TPP cell extract dataset
    csv| json| rda| rds
    list
  7748. TPP2D::simulated_cell_extract_df
    Example subset of a simulated 2D-TPP cell extract dataset
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|820 x 15
  7749. tracktables::Intervals
    Example genomic intervals
    rda| rds
    GRanges
  7750. tradeSeq::celltype
    A vector defining cell types, used in the package vignette.
    json| rda| rds
    character
  7751. tradeSeq::countMatrix
    A count matrix, used in the package vignette.
    rda| rds
    dgCMatrix
  7752. tradeSeq::crv
    A SlingshotDataset object, used in the package vignette.
    rda| rds
    SlingshotDataSet
  7753. tradeSeq::gamList
    A list of GAM models, used to demonstrate the various tests.
    rda| rds
    list
  7754. tradeSeq::sds
    A SlingshotDataset object, used in the package unit tests.
    rda| rds
    SlingshotDataSet
  7755. TrajectoryGeometry::chol_answers
    chol_answers
    json| rda| rds
    list
  7756. TrajectoryGeometry::chol_attributes
    chol_attributes
    csv| json| rda| rds
    matrix|229 x 10
  7757. TrajectoryGeometry::chol_branch_point_results
    chol_branch_point_results
    json| rda| rds
    list
  7758. TrajectoryGeometry::chol_pseudo_time
    chol_pseudo_time
    json| rda| rds
    numeric
  7759. TrajectoryGeometry::chol_pseudo_time_normalised
    chol_pseudo_time_normalised
    json| rda| rds
    numeric
  7760. TrajectoryGeometry::crooked_path
    Crooked path
    csv| json| rda| rds
    matrix|14 x 0
  7761. TrajectoryGeometry::crooked_path_center
    Crooked path center
    json| rda| rds
    numeric
  7762. TrajectoryGeometry::crooked_path_projection
    Crooked path projection
    csv| json| rda| rds
    matrix|8 x 0
  7763. TrajectoryGeometry::crooked_path_radius
    Crooked path radius
    json| rda| rds
    numeric
  7764. TrajectoryGeometry::hep_answers
    hep_answers
    json| rda| rds
    list
  7765. TrajectoryGeometry::hep_attributes
    hep_attributes
    csv| json| rda| rds
    matrix|360 x 10
  7766. TrajectoryGeometry::hep_pseudo_time
    hep_pseudo_time
    json| rda| rds
    numeric
  7767. TrajectoryGeometry::hep_pseudo_time_normalised
    hep_pseudo_time_normalised
    json| rda| rds
    numeric
  7768. TrajectoryGeometry::oscillation
    Oscillation
    csv| json| rda| rds
    matrix|20 x 0
  7769. TrajectoryGeometry::single_cell_matrix
    single_cell_matrix
    csv| json| rda| rds
    matrix|447 x 10
  7770. TrajectoryGeometry::straight_path
    Straight path
    csv| json| rda| rds
    matrix|14 x 0
  7771. TrajectoryGeometry::straight_path_center
    Straight path center
    json| rda| rds
    numeric
  7772. TrajectoryGeometry::straight_path_projection
    Straight path projection
    csv| json| rda| rds
    matrix|13 x 0
  7773. TrajectoryGeometry::straight_path_radius
    Straight path radius
    json| rda| rds
    numeric
  7774. transcriptogramer::association
    Association
    csv| xlsx| json| ndjson| rda| rds
    data.frame|648304 x 2
  7775. transcriptogramer::DEsymbols
    Dictionary Protein2Symbol
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12306 x 2
  7776. transcriptogramer::GPL570
    Dictionary Protein2Probe
    csv| xlsx| json| ndjson| rda| rds
    data.frame|37020 x 2
  7777. transcriptogramer::GSE9988
    Dataset containing expression values
    csv| xlsx| json| ndjson| rda| rds
    data.frame|27828 x 6
  7778. transcriptogramer::Hs700
    Ordered Homo sapiens proteins of combined score greater than or equal to 700
    json| rda| rds
    character
  7779. transcriptogramer::Hs800
    Ordered Homo sapiens proteins of combined score greater than or equal to 800
    json| rda| rds
    character
  7780. transcriptogramer::Hs900
    Ordered Homo sapiens proteins of combined score greater than or equal to 900
    json| rda| rds
    character
  7781. transcriptogramer::HsBPTerms
    Dictionary Protein2GO
    csv| xlsx| json| ndjson| rda| rds
    data.frame|125465 x 2
  7782. transcriptogramer::Mm700
    Ordered Mus musculus proteins of combined score greater than or equal to 700
    json| rda| rds
    character
  7783. transcriptogramer::Mm800
    Ordered Mus musculus proteins of combined score greater than or equal to 800
    json| rda| rds
    character
  7784. transcriptogramer::Mm900
    Ordered Mus musculus proteins of combined score greater than or equal to 900
    json| rda| rds
    character
  7785. transcriptogramer::Rn700
    Ordered Rattus norvegicus proteins of combined score greater than or equal to 700
    json| rda| rds
    character
  7786. transcriptogramer::Rn800
    Ordered Rattus norvegicus proteins of combined score greater than or equal to 800
    json| rda| rds
    character
  7787. transcriptogramer::Rn900
    Ordered Rattus norvegicus proteins of combined score greater than or equal to 900
    json| rda| rds
    character
  7788. transcriptogramer::Sc700
    Ordered Saccharomyces cerevisiae proteins of combined score greater than or equal to 700
    json| rda| rds
    character
  7789. transcriptogramer::Sc800
    Ordered Saccharomyces cerevisiae proteins of combined score greater than or equal to 800
    json| rda| rds
    character
  7790. transcriptogramer::Sc900
    Ordered Saccharomyces cerevisiae proteins of combined score greater than or equal to 900
    json| rda| rds
    character
  7791. transcriptR::annot
    Reference annotation (knownGene from UCSC)
    rda| rds
    GRanges
  7792. transcriptR::cds
    Example of 'ChipDataSet' object.
    rda| rds
    ChipDataSet
  7793. transcriptR::tds
    Example of 'TranscriptionDataSet' object.
    rda| rds
    TranscriptionDataSet
  7794. transite::ge
    Toy Gene Expression Data Set
    csv| json| rda| rds
    list
  7795. transite::kmers_enrichment
    Example _k_-mer Enrichment Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4096 x 6
  7796. transite::motifs
    Transite Motif Database
    rda| rds
    list
  7797. transite::toy_motif_matrix
    Toy Motif Matrix
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 4
  7798. tRanslatome::CCComparison
    Sample data set for tRanslatome
    rda| rds
    GOsims
  7799. tRanslatome::CCEnrichment
    Sample data set for tRanslatome
    rda| rds
    GOsets
  7800. tRanslatome::expressionMatrix
    Sample data set for tRanslatome
    csv| json| rda| rds
    matrix|1000 x 12
  7801. tRanslatome::limma.DEGs
    Sample data set for tRanslatome
    rda| rds
    DEGs
  7802. tRanslatome::regulatory.elements.counts
    Sample data set for tRanslatome
    csv| xlsx| json| ndjson| rda| rds
    data.frame|849 x 3
  7803. tRanslatome::regulatory.elements.regulated
    Sample data set for tRanslatome
    csv| xlsx| json| ndjson| rda| rds
    data.frame|849 x 2
  7804. tRanslatome::translatome.analysis
    Sample data set for tRanslatome
    rda| rds
    TranslatomeDataset
  7805. traseR::CEU
    Sampled SNPs from all SNPs of CEU population in 1000 genome project
    rda| rds
    GRanges
  7806. traseR::taSNP
    trait-associated SNPs in dbGaP and NHGRI downloaded from Association Results Browser
    rda| rds
    GRanges
  7807. traseR::taSNPLD
    linkage disequilibrium (>0.8) within 100kb SNPs of all trait-associated SNPs from dbGaP and NHGRI
    rda| rds
    GRanges
  7808. traseR::Tcell
    Peak regions of H3K4me1 in Peripheral blood T cell
    rda| rds
    GRanges
  7809. TreeAndLeaf::phylo_species
    Species metadata from STRING-db v11
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5090 x 4
  7810. TreeAndLeaf::phylo_tree
    Species tree from STRING-db v11
    rda| rds
    phylo
  7811. TreeAndLeaf::spdata
    Genome statistics for eukaryotes with complete genome sequence
    csv| xlsx| json| ndjson| rda| rds
    data.frame|507 x 5
  7812. treekoR::DeBiasi_COVID_CD8_samp
    COVID-19 Sample data
    rda| rds
    SingleCellExperiment
  7813. TreeSummarizedExperiment::tinyTree
    A simulated phylogenetic tree with 10 tips and 9 internal nodes
    rda| rds
    phylo
  7814. TREG::sce_zero_test
    Test SummarizedExperiment data
    rda| rds
    SummarizedExperiment
  7815. Trendy::trendyExampleData
    Example dataset for Trendy
    csv| json| rda| rds
    matrix|50 x 40
  7816. TRESS::Basal
    Bin-level and region-level data from basal mouse brain samples
    json| rda| rds
    list
  7817. TRESS::DMR_M3vsWT
    Transcriptome location and read counts of 200 candidate DMRs, and size factors.
    json| rda| rds
    list
  7818. TRESS::DMR_SixWeekvsTwoWeek
    Transcriptome location and read counts of 200 candidate DMRs.
    json| rda| rds
    list
  7819. tricycle::neuroRef
    Pre-learned reference projection matrix from the Neurosphere dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 5
  7820. tricycle::neurosphere_example
    Example SingleCellExperiment dataset
    rda| rds
    SingleCellExperiment
  7821. tricycle::RevelioGeneList
    5 stage cell cycle gene marker list from Revelio
    json| rda| rds
    list
  7822. TrIdent::gffSample
    gffSample
    rda| rds
    DFrame
  7823. TrIdent::TrIdentSampleOutput
    TrIdentSampleOutput
    json| rda| rds
    list
  7824. TrIdent::VLPFractionSamplePileup
    VLP-Fraction of Sample Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10805 x 4
  7825. TrIdent::WholeCommunitySamplePileup
    Whole-Community Fraction of Sample Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10805 x 4
  7826. trio::freq.hap
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|20 x 3
  7827. trio::LDdata
    Case-Parent Trio Data
    csv| json| rda| rds
    matrix|500 x 50
  7828. trio::mat.test
    Case-Parent Trio Data
    csv| json| rda| rds
    matrix|300 x 6
  7829. trio::prob.mat.test
    Case-Parent Trio Data
    csv| json| rda| rds
    matrix|334 x 0
  7830. trio::simuBkMap
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|66 x 3
  7831. trio::step3way
    Case-Parent Trio Data
    json| rda| rds
    list
  7832. trio::trio.gen.err
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 7
  7833. trio::trio.gen1
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 12
  7834. trio::trio.gen2
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 12
  7835. trio::trio.ped.err
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 26
  7836. trio::trio.ped1
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 26
  7837. trio::trio.ped2
    Case-Parent Trio Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|300 x 26
  7838. tRNA::gr
    tRNA example data
    rda| rds
    GRanges
  7839. tRNA::gr_eco
    tRNA example data
    rda| rds
    GRanges
  7840. tRNA::gr_human
    tRNA example data
    rda| rds
    GRanges
  7841. tRNA::gr_human2
    tRNA example data
    rda| rds
    GRanges
  7842. TRONCO::aCML
    Atypical chronic myeloid leukemia dataset
    json| rda| rds
    list
  7843. TRONCO::crc_gistic
    GISTIC example data
    csv| json| rda| rds
    matrix|9 x 6
  7844. TRONCO::crc_maf
    MAF example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|17 x 55
  7845. TRONCO::crc_plain
    Plain mutation dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 6
  7846. TRONCO::maf
    MAF example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 66
  7847. TRONCO::muts
    Simple mutation dataset
    json| rda| rds
    list
  7848. TRONCO::stage
    Stage information for test_dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40 x 1
  7849. TRONCO::test_dataset
    A complete dataset with hypotheses
    json| rda| rds
    list
  7850. TRONCO::test_dataset_no_hypos
    A complete dataset
    json| rda| rds
    list
  7851. TRONCO::test_model
    A complete dataset with a reconstructed model
    rda| rds
    list
  7852. TRONCO::test_model_kfold
    A complete dataset with a reconstructed model and crossvalidation informations
    rda| rds
    list
  7853. TSAR::example_normalized_data
    Example normalized TSA dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|63544 x 14
  7854. TSAR::example_tsar_data
    Example tsar_data file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28290 x 11
  7855. TSAR::qPCR_data1
    qPCR_data1 Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29544 x 5
  7856. TSAR::qPCR_data2
    qPCR_data2 Dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|29544 x 5
  7857. TSAR::well_information
    example well information Data
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|9 x 25
  7858. TSAR::well_information_template
    Well Information Template
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|9 x 25
  7859. TSCAN::lpsdata
    Sinlge-cell RNA-seq data for BMDC cells before and after LPS stimulation
    csv| json| rda| rds
    matrix|16776 x 131
  7860. TSENAT::effective_length
    Example transcript-level read counts dataset
    json| rda| rds
    numeric
  7861. TSENAT::readcounts
    Example transcript-level read counts dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3089 x 16
  7862. TSENAT::tpm
    Example transcript-level read counts dataset
    csv| json| rda| rds
    matrix|3089 x 16
  7863. TSSr::exampleTSSr
    TSSr example data
    rda| rds
    TSSr
  7864. TumourMethData::TumourMethDatasets
    TumourMethDatasets
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6 x 11
  7865. TurboNorm::methylation
    CpG island DNA methylation array data
    json| rda| rds
    RGList
  7866. tweeDEseq::seizure
    Epileptic seizure counts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|236 x 6
  7867. tweeDEseqCountData::annotEnsembl63
    Annotation data from Ensemble Release 63
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50451 x 8
  7868. tweeDEseqCountData::hkGenes
    Housekeeping Genes from Eisenberg and Levanon (2003)
    json| rda| rds
    character
  7869. twilight::exfdr
    Example of twilight result
    rda| rds
    twilight
  7870. twilight::expval
    Example of twilight.pval result
    rda| rds
    twilight
  7871. twoddpcr::KRAScounts
    KRAS mutant and wild type droplet counts and Poisson estimates.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 17
  7872. twoddpcr::KRAScountsQS
    KRAS mutant and wild type droplet counts and Poisson estimates.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 63
  7873. twoddpcr::KRAScountsWellCol
    KRAS mutant and wild type droplet counts and Poisson estimates.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|12 x 18
  7874. twoddpcr::KRASdata
    Droplet amplitude data for KRAS mutant and wild type molecules.
    csv| json| rda| rds
    list
  7875. UCell::sample.matrix
    Sample dataset to test UCell installation
    rda| rds
    dgCMatrix
  7876. UMI4Cats::ex_ciita_umi4c
    Contacts with CIITA promoter
    rda| rds
    UMI4C
  7877. UNDO::BiologicalMixMCF7HS27
    MCF7 and HS27 biologically mixed
    rda| rds
    ExpressionSet
  7878. UNDO::NumericalMixingMatrix
    mixing matrix of data NumericalMixMCF7HS27
    csv| json| rda| rds
    matrix|2 x 2
  7879. UNDO::NumericalMixMCF7HS27
    MCF7 and HS27 numerically mixed
    rda| rds
    ExpressionSet
  7880. UNDO::PureMCF7HS27
    pure MCF7 and HS27
    rda| rds
    ExpressionSet
  7881. unifiedWMWqPCR::NBdata
    Documentation for the dataset NBdata
    csv| xlsx| json| ndjson| rda| rds
    data.frame|19703 x 4
  7882. unifiedWMWqPCR::NBgroups
    Documentation for the dataset NBdata
    json| rda| rds
    factor
  7883. unifiedWMWqPCR::NBmat
    Documentation for the dataset NBdata
    csv| json| rda| rds
    matrix|323 x 61
  7884. universalmotif::ArabidopsisMotif
    Arabidopsis motif in 'universalmotif' format.
    rda| rds
    universalmotif
  7885. universalmotif::ArabidopsisPromoters
    Arabidopsis promoters as a 'DNAStringSet'.
    rda| rds
    DNAStringSet
  7886. universalmotif::examplemotif
    Example motif in 'universalmotif' format.
    rda| rds
    universalmotif
  7887. universalmotif::examplemotif2
    Another example motif in 'universalmotif' format.
    rda| rds
    universalmotif
  7888. universalmotif::fontDFroboto
    Polygon coordinates for plotting letters.
    rda| rds
    DFrame
  7889. universalmotif::JASPAR2018_CORE_DBSCORES
    JASPAR2018 CORE database scores
    rda| rds
    DFrame
  7890. UPDhmm::hmm
    HMM data for predicting UPD events in trio genomic data
    json| rda| rds
    list
  7891. VanillaICE::snp_exp
    An example SnpArrayExperiment
    rda| rds
    SnpArrayExperiment
  7892. VarCon::gene2transcript
    Small data frame specifying a transcript to certain genes for synonymous use.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1 x 3
  7893. VarCon::hbg
    Donor sequences and their HBS
    csv| xlsx| json| ndjson| rda| rds
    data.frame|262144 x 2
  7894. VarCon::hex
    Hexamers and Z scores
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|4096 x 7
  7895. VarCon::referenceDnaStringSet
    Small DNAStringset as exemplary reference genome sequence
    rda| rds
    DNAStringSet
  7896. VarCon::transCoord
    Small table as exemplary transcript table with exon coordinates
    csv| xlsx| json| ndjson| rda| rds
    data.frame|5 x 12
  7897. variancePartition::countMatrix
    A simulated dataset of gene counts
    csv| json| rda| rds
    matrix|19364 x 24
  7898. variancePartition::geneCounts
    Simulation dataset for examples
    csv| json| rda| rds
    matrix|200 x 100
  7899. variancePartition::geneExpr
    Simulation dataset for examples
    csv| json| rda| rds
    matrix|200 x 100
  7900. variancePartition::info
    Simulation dataset for examples
    csv| xlsx| json| ndjson| rda| rds
    data.frame|100 x 6
  7901. variancePartition::metadata
    A simulated dataset of gene counts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|24 x 5
  7902. VariantTools::coverage_H1993
    Vignette Data
    rda| rds
    SimpleRleList
  7903. VariantTools::coverage_H2073
    Vignette Data
    rda| rds
    SimpleRleList
  7904. VariantTools::genome_p53
    Vignette Data
    rda| rds
    GRanges
  7905. VariantTools::p53
    Vignette Data
    rda| rds
    GRanges
  7906. VariantTools::tallies_H1993
    Vignette Data
    rda| rds
    VRanges
  7907. VariantTools::tallies_H2073
    Vignette Data
    rda| rds
    VRanges
  7908. VariantToolsData::geno
    Reference genotypes
    rda| rds
    VRanges
  7909. VariantToolsData::repeats
    Simple repeats
    rda| rds
    GRanges
  7910. VariantToolsData::tallies
    Tally VRanges
    rda| rds
    SimpleVRangesList
  7911. vbmp::BRCA12
    BRCA tumour dataset
    rda| rds
    ExpressionSet
  7912. VDJdive::contigs
    SplitDataFrameList containing AIRR-seq (TCR) data for six cells
    rda| rds
    CompressedSplitDFrameList
  7913. veloviz::pancreas
    Pancreas scRNA-seq data
    json| rda| rds
    list
  7914. veloviz::vel
    MERFISH velocity subset
    csv| json| rda| rds
    list
  7915. VennDetail::T2DM
    T2DM Dataset
    csv| json| rda| rds
    list
  7916. VERSO::inference
    Results obtained running VERSO on the provided input dataset.
    rda| rds
    list
  7917. VERSO::variants
    Mutation data obtained by variant calling from raw data of a selected set of SARS-CoV-2 samples available from NCBI BioProject PRJNA610428.
    csv| json| rda| rds
    matrix|15 x 6
  7918. vidger::df.cuff
    A 'cuffdiff' example dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1200 x 14
  7919. vidger::df.deseq
    A 'DESeq2' example dataset
    rda| rds
    DESeqDataSet
  7920. vidger::df.edger
    A 'edgeR' example dataset
    json| rda| rds
    DGEList
  7921. ViSEAGO::myGOs
    myGOs dataset
    rda| rds
    GO_SS
  7922. vissE::hgsc
    The Hallmark collection from the MSigDB
    rda| rds
    GeneSetCollection
  7923. VISTA::count_data
    Example RNA-seq count matrix shipped with VISTA
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|63677 x 9
  7924. VISTA::sample_metadata
    Sample metadata accompanying the VISTA airway example counts
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|8 x 13
  7925. vmrseq::cell_1
    cell_1
    csv| xlsx| json| ndjson| rda| rds
    data.table|10000 x 5
  7926. vmrseq::cell_2
    cell_2
    csv| xlsx| json| ndjson| rda| rds
    data.table|10000 x 5
  7927. vmrseq::cell_3
    cell_3
    csv| xlsx| json| ndjson| rda| rds
    data.table|10000 x 5
  7928. vmrseq::toy.gr
    toy.gr
    rda| rds
    GRanges
  7929. vmrseq::toy.results
    toy.results
    rda| rds
    list
  7930. Voyager::ditto_colors
    Colorblind friendly palette from dittoSeq
    json| rda| rds
    character
  7931. VplotR::ABF1_sacCer3
    ABF1_sacCer3
    rda| rds
    GRanges
  7932. VplotR::ATAC_ce11_Serizay2020
    ATAC_ce11_Serizay2020
    rda| rds
    list
  7933. VplotR::bam_test
    bam_test
    rda| rds
    GRanges
  7934. VplotR::ce11_all_REs
    ce11_all_REs
    rda| rds
    GRanges
  7935. VplotR::ce11_proms
    ce11_proms
    rda| rds
    GRanges
  7936. VplotR::CTCF_hg38
    CTCF_hg38
    rda| rds
    GRanges
  7937. VplotR::MNase_sacCer3_Henikoff2011
    MNase_sacCer3_Henikoff2011
    rda| rds
    GRanges
  7938. VplotR::MNase_sacCer3_Henikoff2011_subset
    MNase_sacCer3_Henikoff2011_subset
    rda| rds
    GRanges
  7939. VplotR::REB1_sacCer3
    REB1_sacCer3
    rda| rds
    GRanges
  7940. vsclust::artificial_clusters
    Synthetic/artificial data comprising 5 clusters
    csv| xlsx| json| ndjson| rda| rds
    data.frame|500 x 50
  7941. vsclust::protein_expressions
    Data from a typical proteomics experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|574 x 12
  7942. vsn::kidney
    Intensity data for one cDNA slide with two adjacent tissue samples from a nephrectomy (kidney)
    rda| rds
    ExpressionSet
  7943. vsn::lymphoma
    Intensity data for 8 cDNA slides with CLL and DLBL samples from the Alizadeh et al. paper in Nature 2000
    rda| rds
    ExpressionSet
  7944. vtpnet::cancerMap
    variant-transcription factor-phenotype networks
    csv| xlsx| json| ndjson| rda| rds
    data.frame|50 x 2
  7945. vtpnet::maurGWAS
    variant-transcription factor-phenotype networks
    rda| rds
    GRanges
  7946. vtpnet::pax4
    variant-transcription factor-phenotype networks
    rda| rds
    GRanges
  7947. vtpnet::pax4_75
    variant-transcription factor-phenotype networks
    rda| rds
    GRanges
  7948. vtpnet::pax4_85
    variant-transcription factor-phenotype networks
    rda| rds
    GRanges
  7949. wateRmelon::ageCoefs
    json| rda| rds
    list
  7950. wateRmelon::coef
    Age Prediction from methylomic expression data
    json| rda| rds
    numeric
  7951. wateRmelon::epic.controls
    readEPIC
    csv| xlsx| json| ndjson| rda| rds
    data.frame|635 x 4
  7952. wateRmelon::epicV2.controls
    csv| xlsx| json| ndjson| rda| rds
    data.frame|635 x 4
  7953. wateRmelon::hannumCoef
    Age Prediction from methylomic expression data
    json| rda| rds
    numeric
  7954. wateRmelon::iDMR
    Imprinting differentially methylated region probes of Illumina 450 arrays
    json| rda| rds
    character
  7955. wateRmelon::melon
    Small MethyLumi data set for examples and testing
    rda| rds
    MethyLumiSet
  7956. wateRmelon::sex_coef
    csv| xlsx| json| ndjson| rda| rds
    data.frame|453152 x 5
  7957. wateRmelon::smokp_cpgs
    Smoking Prediction from methylomic expression data
    json| rda| rds
    list
  7958. wavClusteR::model
    Components of the non-parametric mixture moodel fitted on Ago2 PAR-CLIP data
    json| rda| rds
    list
  7959. weitrix::simwei
    Simulated weitrix dataset.
    rda| rds
    SummarizedExperiment
  7960. WGSmapp::mapp_hg19
    GRanges with mappability scores for hg19
    rda| rds
    GRanges
  7961. WGSmapp::mapp_hg38
    GRanges with mappability scores for hg38
    rda| rds
    GRanges
  7962. wiggleplotr::ncoa7_cdss
    Coding sequences from 9 protein coding transcripts of NCOA7
    rda| rds
    CompressedGRangesList
  7963. wiggleplotr::ncoa7_exons
    Exons from 9 protein coding transcripts of NCOA7
    rda| rds
    CompressedGRangesList
  7964. wiggleplotr::ncoa7_metadata
    Gene metadata for NCOA7
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|9 x 4
  7965. wpm::data_test
    Fictitious clinical data for demonstration.
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|193 x 7
  7966. wSIR::sample1_cell_types
    Mouse Gastrulation Data
    json| rda| rds
    character
  7967. wSIR::sample1_coords
    Mouse Gastrulation Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3848 x 2
  7968. wSIR::sample1_exprs
    Mouse Gastrulation Data
    rda| rds
    dgCMatrix
  7969. wSIR::sample2_cell_types
    Mouse Gastrulation Data
    json| rda| rds
    character
  7970. wSIR::sample2_coords
    Mouse Gastrulation Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2986 x 2
  7971. wSIR::sample2_exprs
    Mouse Gastrulation Data
    rda| rds
    dgCMatrix
  7972. wSIR::sample3_cell_types
    Mouse Gastrulation Data
    json| rda| rds
    character
  7973. wSIR::sample3_coords
    Mouse Gastrulation Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4607 x 2
  7974. wSIR::sample3_exprs
    Mouse Gastrulation Data
    rda| rds
    dgCMatrix
  7975. xCell2::BlueprintEncode.xCell2Ref
    Blueprint and ENCODE Projects Reference
    rda| rds
    xCell2Object
  7976. xCell2::dice_demo_ref
    Subset of the DICE Reference
    rda| rds
    SummarizedExperiment
  7977. xCell2::DICE_demo.xCell2Ref
    Demo xCell2 Reference Object
    rda| rds
    xCell2Object
  7978. xCell2::ImmGenData.xCell2Ref
    Immunologic Genome Project Reference
    rda| rds
    xCell2Object
  7979. xCell2::ImmuneCompendium.xCell2Ref
    Immune Compendium Reference
    rda| rds
    xCell2Object
  7980. xCell2::LM22.xCell2Ref
    LM22 Reference
    rda| rds
    xCell2Object
  7981. xCell2::mix_demo
    Demo Bulk Gene Expression Data
    csv| json| rda| rds
    matrix|1000 x 3
  7982. xCell2::MouseRNAseqData.xCell2Ref
    Mouse RNA-Seq Data Reference
    rda| rds
    xCell2Object
  7983. xCell2::PanCancer.xCell2Ref
    PanCancer Reference
    rda| rds
    xCell2Object
  7984. xCell2::TabulaMurisBlood.xCell2Ref
    Tabula Muris Blood Reference
    rda| rds
    xCell2Object
  7985. xCell2::TabulaSapiensBlood.xCell2Ref
    Tabula Sapiens Blood Reference
    rda| rds
    xCell2Object
  7986. xCell2::TMECompendium.xCell2Ref
    Tumor Microenvironment Compendium Reference
    rda| rds
    xCell2Object
  7987. xcms::faahko_sub
    LC-MS preprocessing result test data sets
    rda| rds
    XCMSnExp
  7988. xcms::faahko_sub2
    LC-MS preprocessing result test data sets
    rda| rds
    XcmsExperiment
  7989. xcms::xdata
    LC-MS preprocessing result test data sets
    rda| rds
    XCMSnExp
  7990. xcms::xmse
    LC-MS preprocessing result test data sets
    rda| rds
    XcmsExperiment
  7991. xcore::remap_mini
    xcore example molecular signatures
    rda| rds
    dgCMatrix
  7992. xcore::rinderpest_mini
    xcore example expression data
    csv| json| rda| rds
    matrix|14191 x 9
  7993. XDE::expressionSetList
    Example of ExpressionSetList
    rda| rds
    ExpressionSetList
  7994. XDE::xmcmc
    Object of class XdeMcmc
    rda| rds
    XdeMcmc
  7995. xenLite::e79sym
    mapping from ENSG to symbols based on EnsDb.Hsapiens.v79
    json| rda| rds
    character
  7996. Xeva::brca
    PDXE breast cancer dataset
    rda| rds
    XevaSet
  7997. Xeva::PDXMI
    PDX-MI data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|45 x 4
  7998. Xeva::repdx
    Example PDX dataset
    rda| rds
    XevaSet
  7999. XhybCasneuf::AffysTissue
    Affymetrix' CDF probe set pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42826 x 6
  8000. XhybCasneuf::AffysTissue.noBl
    Affymetrix' CDF probe set pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|11361 x 6
  8001. XhybCasneuf::AffysTissueMC
    Affymetrix' CDF probe set pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|42815 x 7
  8002. XhybCasneuf::CustomsTissue
    Custom-made CDF's probe set pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|40094 x 4
  8003. XhybCasneuf::CustomsTissue.noBl
    Custom-made CDF's probe set pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10702 x 4
  8004. XhybCasneuf::CustomsTissueMC
    Custom-made CDF's probe set pairs
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39424 x 5
  8005. XhybCasneuf::ex1
    Cross-hybridisation example
    rda| rds
    XhybExamples
  8006. XhybCasneuf::ex2
    Cross-hybridisation example
    rda| rds
    XhybExamples
  8007. XhybCasneuf::ex3
    Cross-hybridisation example
    rda| rds
    XhybExamples
  8008. XINA::example_clusters
    Randomly generated example datasets for XINA users. A dataset containing the XINA clustering results.
    json| rda| rds
    list
  8009. XINA::gn
    A character vector containing 19,396 human genes This is for the randome data generation of XINA
    json| rda| rds
    character
  8010. XINA::gn_desc
    A character vector containing 19,396 human gene descriptions This is for the randome data generation of XINA
    json| rda| rds
    character
  8011. XINA::hprd_ppi
    Protein-protein interaction resource downloaded from HPRD DB A data frame containing HRPD protein-protein interaction data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|39240 x 3
  8012. XINA::string_example
    Protein-protein interaction resource downloaded from STRING DB for XINA's example dataset A data frame containing protein-protein interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7984 x 3
  8013. XINA::xina_result_example
    Previously processed xina analysis using XINA's random example data A list containing 'xina_analysis' results
    rda| rds
    list
  8014. xmapbridge::exon.data
    Sample exon array dataset
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8888 x 18
  8015. yamss::cmsRawExample
    An example cmsRaw object
    rda| rds
    CMSraw
  8016. YAPSA::AlexCosmicArtif_sig_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 35
  8017. YAPSA::AlexCosmicArtif_sigInd_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 8
  8018. YAPSA::AlexCosmicValid_sig_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 40
  8019. YAPSA::AlexCosmicValid_sig_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 30
  8020. YAPSA::AlexCosmicValid_sigInd_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|31 x 8
  8021. YAPSA::AlexInitialArtif_sig_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 27
  8022. YAPSA::AlexInitialArtif_sigInd_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|28 x 8
  8023. YAPSA::AlexInitialValid_sig_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 22
  8024. YAPSA::AlexInitialValid_sigInd_df
    Data for mutational signatures
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 8
  8025. YAPSA::chosen_signatures_indices_df
    Test and example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 4
  8026. YAPSA::COSMIC_subgroups_df
    Test and example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 8
  8027. YAPSA::cutoffCosmicArtif_abs_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 35
  8028. YAPSA::cutoffCosmicArtif_rel_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 35
  8029. YAPSA::cutoffCosmicValid_abs_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 30
  8030. YAPSA::cutoffCosmicValid_rel_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 30
  8031. YAPSA::cutoffInitialArtif_abs_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 27
  8032. YAPSA::cutoffInitialArtif_rel_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 27
  8033. YAPSA::cutoffInitialValid_abs_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 22
  8034. YAPSA::cutoffInitialValid_rel_df
    Cutoffs for a supervised analysis of mutational signatures.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 22
  8035. YAPSA::cutoffPCAWG_ID_WGS_Pid_df
    Opt. cutoffs, PCAWG SNV signatures, including artifacts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10 x 16
  8036. YAPSA::cutoffPCAWG_SBS_WGSWES_artifPid_df
    Opt. cutoffs, PCAWG SNV signatures, including artifacts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 65
  8037. YAPSA::cutoffPCAWG_SBS_WGSWES_realPid_df
    Opt. cutoffs, PCAWG SNV signatures, including artifacts
    csv| xlsx| json| ndjson| rda| rds
    data.frame|15 x 47
  8038. YAPSA::exchange_colour_vector
    Colours codes for displaying SNVs
    json| rda| rds
    character
  8039. YAPSA::exome_mutCatRaw_df
    Example mutational catalog for the exome vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 70
  8040. YAPSA::GenomeOfNl_raw
    Example data for the Indel vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|591 x 8
  8041. YAPSA::lymphoma_Nature2013_COSMIC_cutoff_exposures_df
    Test and example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 23
  8042. YAPSA::lymphoma_Nature2013_raw_df
    Test and example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|128639 x 8
  8043. YAPSA::lymphoma_PID_df
    Test and example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|23 x 1
  8044. YAPSA::lymphoma_test_df
    Test and example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10113 x 10
  8045. YAPSA::lymphomaNature2013_mutCat_df
    Example mutational catalog for the SNV vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 23
  8046. YAPSA::MutCat_indel_df
    Example mutational catalog for the Indel vignette
    csv| xlsx| json| ndjson| rda| rds
    data.frame|83 x 15
  8047. YAPSA::PCAWG_SP_ID_sigInd_df
    Data for PCAWG SNV signatures (COSMIC v3), including artifacts 'PCAWG_SP_SBS_sigs_Artif_df': Data frame of the signatures published by Alexandrov et al. (Biorxiv 2013) which were decomposed with the method SigProfiler. SNV signatures are labeled with SBS, single base signature. There are 67 signatures which constitute the columns, 47 of which were validated by a bayesian NFM mehtod, SignatureAnayzer. Validated signatures are SBS1-SBS26,SBS28-SBS42 and SBS44. SBS7 is split up into 7 a/b/c and d. SBS10 ans SBS17 are both split up into a and b. Resulting in a 47 validated sigantures. Please note, unlike the paper by Alexandrov et al. (Biorxiv 2018) the data sets do not contain a SBS84 and SBS85 as not all were availiablt to perfom supervised signature analysis. In total there are 96 different features and therefore 96 rows when dealing with a trinucleotide context.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|16 x 4
  8048. YAPSA::PCAWG_SP_ID_sigs_df
    Data for PCAWG SNV signatures (COSMIC v3), including artifacts 'PCAWG_SP_SBS_sigs_Artif_df': Data frame of the signatures published by Alexandrov et al. (Biorxiv 2013) which were decomposed with the method SigProfiler. SNV signatures are labeled with SBS, single base signature. There are 67 signatures which constitute the columns, 47 of which were validated by a bayesian NFM mehtod, SignatureAnayzer. Validated signatures are SBS1-SBS26,SBS28-SBS42 and SBS44. SBS7 is split up into 7 a/b/c and d. SBS10 ans SBS17 are both split up into a and b. Resulting in a 47 validated sigantures. Please note, unlike the paper by Alexandrov et al. (Biorxiv 2018) the data sets do not contain a SBS84 and SBS85 as not all were availiablt to perfom supervised signature analysis. In total there are 96 different features and therefore 96 rows when dealing with a trinucleotide context.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|83 x 16
  8049. YAPSA::PCAWG_SP_SBS_sigInd_Artif_df
    Data for PCAWG SNV signatures (COSMIC v3), including artifacts 'PCAWG_SP_SBS_sigs_Artif_df': Data frame of the signatures published by Alexandrov et al. (Biorxiv 2013) which were decomposed with the method SigProfiler. SNV signatures are labeled with SBS, single base signature. There are 67 signatures which constitute the columns, 47 of which were validated by a bayesian NFM mehtod, SignatureAnayzer. Validated signatures are SBS1-SBS26,SBS28-SBS42 and SBS44. SBS7 is split up into 7 a/b/c and d. SBS10 ans SBS17 are both split up into a and b. Resulting in a 47 validated sigantures. Please note, unlike the paper by Alexandrov et al. (Biorxiv 2018) the data sets do not contain a SBS84 and SBS85 as not all were availiablt to perfom supervised signature analysis. In total there are 96 different features and therefore 96 rows when dealing with a trinucleotide context.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|67 x 4
  8050. YAPSA::PCAWG_SP_SBS_sigInd_Real_df
    Data for PCAWG SNV signatures (COSMIC v3), including artifacts 'PCAWG_SP_SBS_sigs_Artif_df': Data frame of the signatures published by Alexandrov et al. (Biorxiv 2013) which were decomposed with the method SigProfiler. SNV signatures are labeled with SBS, single base signature. There are 67 signatures which constitute the columns, 47 of which were validated by a bayesian NFM mehtod, SignatureAnayzer. Validated signatures are SBS1-SBS26,SBS28-SBS42 and SBS44. SBS7 is split up into 7 a/b/c and d. SBS10 ans SBS17 are both split up into a and b. Resulting in a 47 validated sigantures. Please note, unlike the paper by Alexandrov et al. (Biorxiv 2018) the data sets do not contain a SBS84 and SBS85 as not all were availiablt to perfom supervised signature analysis. In total there are 96 different features and therefore 96 rows when dealing with a trinucleotide context.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47 x 4
  8051. YAPSA::PCAWG_SP_SBS_sigs_Artif_df
    Data for PCAWG SNV signatures (COSMIC v3), including artifacts 'PCAWG_SP_SBS_sigs_Artif_df': Data frame of the signatures published by Alexandrov et al. (Biorxiv 2013) which were decomposed with the method SigProfiler. SNV signatures are labeled with SBS, single base signature. There are 67 signatures which constitute the columns, 47 of which were validated by a bayesian NFM mehtod, SignatureAnayzer. Validated signatures are SBS1-SBS26,SBS28-SBS42 and SBS44. SBS7 is split up into 7 a/b/c and d. SBS10 ans SBS17 are both split up into a and b. Resulting in a 47 validated sigantures. Please note, unlike the paper by Alexandrov et al. (Biorxiv 2018) the data sets do not contain a SBS84 and SBS85 as not all were availiablt to perfom supervised signature analysis. In total there are 96 different features and therefore 96 rows when dealing with a trinucleotide context.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 67
  8052. YAPSA::PCAWG_SP_SBS_sigs_Real_df
    Data for PCAWG SNV signatures (COSMIC v3), including artifacts 'PCAWG_SP_SBS_sigs_Artif_df': Data frame of the signatures published by Alexandrov et al. (Biorxiv 2013) which were decomposed with the method SigProfiler. SNV signatures are labeled with SBS, single base signature. There are 67 signatures which constitute the columns, 47 of which were validated by a bayesian NFM mehtod, SignatureAnayzer. Validated signatures are SBS1-SBS26,SBS28-SBS42 and SBS44. SBS7 is split up into 7 a/b/c and d. SBS10 ans SBS17 are both split up into a and b. Resulting in a 47 validated sigantures. Please note, unlike the paper by Alexandrov et al. (Biorxiv 2018) the data sets do not contain a SBS84 and SBS85 as not all were availiablt to perfom supervised signature analysis. In total there are 96 different features and therefore 96 rows when dealing with a trinucleotide context.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|96 x 47
  8053. YAPSA::rel_lymphoma_Nature2013_COSMIC_cutoff_exposures_df
    Test and example data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7 x 23
  8054. YAPSA::targetCapture_cor_factors
    Correction factors for different target capture kits
    csv| rda| rds
    list
  8055. yarn::bladder
    Bladder RNA-seq data from the GTEx consortium
    rda| rds
    ExpressionSet
  8056. yarn::skin
    Skin RNA-seq data from the GTEx consortium
    rda| rds
    ExpressionSet
  8057. yeastCC::breeden
    Breeden et al. yeast cell cycle experiment
    rda| rds
    ExpressionSet
  8058. yeastCC::orf800
    Cell cycle regulated genes from Spellman et al. (1998)
    json| rda| rds
    character
  8059. yeastCC::spYCCES
    Data from the Spellman et al. (1998) yeast cell cycle microarray experiment
    rda| rds
    ExpressionSet
  8060. yeastCC::spYCCmeta
    metadata on yeast cell cycle microarray experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|800 x 75
  8061. yeastCC::yeastCC
    Data from the Spellman et al. (1998) yeast cell cycle microarray experiment
    rda| rds
    ExpressionSet
  8062. yeastExpData::ccyclered
    ~~ data name/kind ... ~~
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2885 x 11
  8063. yeastExpData::fcabundance
    Yeast protein abundance
    csv| xlsx| json| ndjson| rda| rds
    data.frame|4159 x 6
  8064. yeastExpData::gfp
    Yeast GFP Fusion Data
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6234 x 33
  8065. yeastExpData::litG
    Literature and Y2H interaction graphs
    rda| rds
    graphNEL
  8066. yeastExpData::nPdist
    Counts from a node permutation experiment.
    json| rda| rds
    numeric
  8067. yeastExpData::proteinProperties
    Properties of Yeast proteins
    csv| xlsx| json| ndjson| rda| rds
    data.frame|6717 x 33
  8068. yeastExpData::y2hG
    Literature and Y2H interaction graphs
    rda| rds
    graphNEL
  8069. yeastGSData::BayesFactorNGS
    The Binary Negative Gold Standard Developed via Bayes Factor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7739 x 5
  8070. yeastGSData::BayesFactorPGS
    The Binary Positive Gold Standard Developed via Bayes Factor
    csv| xlsx| json| ndjson| rda| rds
    data.frame|10200 x 5
  8071. yeastGSData::BinaryGS
    The Binary Gold Standard Data set Reported by Yu et al
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1318 x 2
  8072. yeastGSData::MIPSGS
    MIPS Gold Standard Protein Interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8617 x 5
  8073. yeastGSData::Mpact
    Protein Interaction Data from Mpact
    csv| json| rda| rds
    matrix|15456 x 7
  8074. yeastGSData::MpactEvidenceCodes
    MIPS Evidence Codes
    json| rda| rds
    character
  8075. yeastGSData::NEGGS
    A Gold Standard for Negative Interactions
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2708746 x 4
  8076. yeastGSData::POSPS
    A Platinum Standard Data Set
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1867 x 2
  8077. yeastGSData::PRS
    The Positive Reference Set Reported by Yu et al
    csv| xlsx| json| ndjson| rda| rds
    data.frame|188 x 2
  8078. yeastRNASeq::geneLevelData
    Yeast gene-level counts from: Lee et al. PloS Genetics 2008.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7065 x 4
  8079. yeastRNASeq::yeastAligned
    AlignedRead list
    rda| rds
    list
  8080. yeastRNASeq::yeastAnno
    Yeast Annotation
    csv| xlsx| json| ndjson| rda| rds
    data.frame|7124 x 6
  8081. zebrafishRNASeq::zfGenes
    Zebrafish RNA-Seq Experimental Data from Ferreira et al. (2014)
    csv| xlsx| json| ndjson| rda| rds
    data.frame|32561 x 6
  8082. zinbwave::toydata
    Toy dataset to check the model
    csv| json| rda| rds
    matrix|96 x 500
  8083. zitools::mtx
    Matrix Data
    csv| json| rda| rds
    matrix|100 x 0
  8084. ZygosityPredictor::GR_GENE_MODEL
    germline small variant object
    rda| rds
    GRanges
  8085. ZygosityPredictor::GR_GERM_SMALL_VARS
    germline small variant object
    rda| rds
    GRanges
  8086. ZygosityPredictor::GR_HAPLOBLOCKS
    haploblocks
    rda| rds
    GRanges
  8087. ZygosityPredictor::GR_SCNA
    copynumber object
    rda| rds
    GRanges
  8088. ZygosityPredictor::GR_SOM_SMALL_VARS
    somatic small variant object
    rda| rds
    GRanges