{"gene.name":"thrA","gene.annotation":"aspartokinase I/homoserine dehydrogenase I","operon.name":"thr","operon.comments":"threonine biosynthesis"}
{"gene.name":"thrB","gene.annotation":"homoserine kinase","operon.name":"thr","operon.comments":"threonine biosynthesis"}
{"gene.name":"thrC","gene.annotation":"threonine synthase","operon.name":"thr","operon.comments":"threonine biosynthesis"}
{"gene.name":"dnaK","gene.annotation":"DNA biosynthesis; heat shock protein","operon.name":"dnaK","operon.comments":"DNA biosynthesis"}
{"gene.name":"dnaJ","gene.annotation":"DNA biosynthesis; heat shock protein","operon.name":"dnaK","operon.comments":"DNA biosynthesis"}
{"gene.name":"yaaC","gene.annotation":"35K hypothetical","operon.name":"ileS-lsp","operon.comments":"tRNA synthetase & peptidase"}
{"gene.name":"ileS","gene.annotation":"isoleucine tRNA synthetase (EC 6.1.1.5)","operon.name":"ileS-lsp","operon.comments":"tRNA synthetase & peptidase"}
{"gene.name":"lspA","gene.annotation":"prolipoprotein signal peptidase (SPaseII) (EC 3.4 99 35)","operon.name":"ileS-lsp","operon.comments":"tRNA synthetase & peptidase"}
{"gene.name":"carA","gene.annotation":"carbamoyl-phosphate synthetase subunit A","operon.name":"carAB","operon.comments":"carbamoyl-phosphate synthetase"}
{"gene.name":"carB","gene.annotation":"carbamoyl-phosphate synthetase subunit B","operon.name":"carAB","operon.comments":"carbamoyl-phosphate synthetase"}
{"gene.name":"caiT","gene.annotation":"probable carnitine transporter","operon.name":"cai","operon.comments":"probable carnitine operon"}
{"gene.name":"caiA","gene.annotation":"probable carnitine operon oxidoreductase CaiA","operon.name":"cai","operon.comments":"probable carnitine operon"}
{"gene.name":"caiB","gene.annotation":"L-carnitine dehydratase","operon.name":"cai","operon.comments":"probable carnitine operon"}
{"gene.name":"caiC","gene.annotation":"probable crotonobetaine/carnitine-CoA ligase","operon.name":"cai","operon.comments":"probable carnitine operon"}
{"gene.name":"caiD","gene.annotation":"carnitine racemase","operon.name":"cai","operon.comments":"probable carnitine operon"}
{"gene.name":"caiE","gene.annotation":"carnitine operon protein CaiE","operon.name":"cai","operon.comments":"probable carnitine operon"}
{"gene.name":"fixA","gene.annotation":"FixA protein","operon.name":"fix","operon.comments":"may play a role in a redox process"}
{"gene.name":"fixB","gene.annotation":"FixB protein","operon.name":"fix","operon.comments":"may play a role in a redox process"}
{"gene.name":"fixC","gene.annotation":"FixC protein (similar to the ORF at 1784259)","operon.name":"fix","operon.comments":"may play a role in a redox process"}
{"gene.name":"surA","gene.annotation":"peptidyl prolyl isomerase; survival protein SurA precursor","operon.name":"surA-pdxA-ksgA-apaGH","operon.comments":"16S ribosomal RNA modification & chaperone"}
{"gene.name":"pdxA","gene.annotation":"pyridoxine and pyridoxal phosphate biosynthesis","operon.name":"surA-pdxA-ksgA-apaGH","operon.comments":"16S ribosomal RNA modification & chaperone"}
{"gene.name":"ksgA","gene.annotation":"6-m-2-A methyltransferase; put. 16S rRNA methyltransferase","operon.name":"surA-pdxA-ksgA-apaGH","operon.comments":"16S ribosomal RNA modification & chaperone"}
{"gene.name":"apaG","gene.annotation":"ApaG protein","operon.name":"surA-pdxA-ksgA-apaGH","operon.comments":"16S ribosomal RNA modification & chaperone"}
{"gene.name":"apaH","gene.annotation":"diadenosine tetraphosphatase","operon.name":"surA-pdxA-ksgA-apaGH","operon.comments":"16S ribosomal RNA modification & chaperone"}
{"gene.name":"araB","gene.annotation":"L-ribulokinase","operon.name":"araBAD","operon.comments":"arabinose catabolic pathway"}
{"gene.name":"araA","gene.annotation":"L-arabinose isomerase","operon.name":"araBAD","operon.comments":"arabinose catabolic pathway"}
{"gene.name":"araD","gene.annotation":"L-ribulose 5 phosphate 4-epimerase (similar to the ORF at 3744844)","operon.name":"araBAD","operon.comments":"arabinose catabolic pathway"}
{"gene.name":"leuA","gene.annotation":"2-isopropylmalate synthase ;alpha-isopropylmalate synthase","operon.name":"leu","operon.comments":"leucine biosynthesis"}
{"gene.name":"leuB","gene.annotation":"3-isopropylmalate dehydrogenase (EC 1.1.1.85)","operon.name":"leu","operon.comments":"leucine biosynthesis"}
{"gene.name":"leuC","gene.annotation":"3-isopropylmalate dehydratase (EC 4.2.1.33)","operon.name":"leu","operon.comments":"leucine biosynthesis"}
{"gene.name":"leuD","gene.annotation":"3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)","operon.name":"leu","operon.comments":"leucine biosynthesis"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"ilvIH","operon.comments":"acetolactate synthase III"}
{"gene.name":"ilvI","gene.annotation":"acetolactate synthase III (EC 4.1.3.18), valine sensitive, large subunit","operon.name":"ilvIH","operon.comments":"acetolactate synthase III"}
{"gene.name":"ilvH","gene.annotation":"acetolactate synthase III (EC 4.1.3.18), valine sensitive, small subunit","operon.name":"ilvIH","operon.comments":"acetolactate synthase III"}
{"gene.name":"murG","gene.annotation":"transferase in peptidoglycan synthesis","operon.name":"murGC","operon.comments":"peptidoglycan synthesis"}
{"gene.name":"murC","gene.annotation":"L-alanine-adding enzyme (EC 6.3.2.8)","operon.name":"murGC","operon.comments":"peptidoglycan synthesis"}
{"gene.name":"ddlB","gene.annotation":"(ddl) D-alanine-D-alanine ligase B (EC 6.3.2.4)","operon.name":"murGC","operon.comments":"peptidoglycan synthesis"}
{"gene.name":"ampD","gene.annotation":"AmpD protein; a repressor for ampC transcription","operon.name":"ampDE","operon.comments":"putative signalling protein in beta-lactamase regulation"}
{"gene.name":"ampE","gene.annotation":"AmpE protein","operon.name":"ampDE","operon.comments":"putative signalling protein in beta-lactamase regulation"}
{"gene.name":"aceE","gene.annotation":"pyruvate dehydrogenase (decarboxylase component) (EC 1.2.4.1)","operon.name":"aceEF","operon.comments":"pyruvate dehydrogenase"}
{"gene.name":"aceF","gene.annotation":"pyruvate dehydrogenase (dihydrolipoyltransacetylase component)(EC 2.3.1.12)","operon.name":"aceEF","operon.comments":"pyruvate dehydrogenase"}
{"gene.name":"lpdA","gene.annotation":"(lpd) pyruvate dehydrogenase (lipoamide dehydrogenase)","operon.name":"aceEF","operon.comments":"pyruvate dehydrogenase"}
{"gene.name":"speE","gene.annotation":"spermidine synthase","operon.name":"speED","operon.comments":"biosynthesis of spermidine"}
{"gene.name":"speD","gene.annotation":"adenosylmethionine decarboxylase","operon.name":"speED","operon.comments":"biosynthesis of spermidine"}
{"gene.name":"ecpD","gene.annotation":"periplasmic protein","operon.name":"htrE","operon.comments":"periplasmic protein"}
{"gene.name":"htrE","gene.annotation":"outer membrane usher protein htrE precursor (heat shock protein E)","operon.name":"htrE","operon.comments":"periplasmic protein"}
{"gene.name":"fhuA","gene.annotation":"ferrichrome-iron receptor precursor","operon.name":"fhuACDB","operon.comments":"ferrichrome-iron transport"}
{"gene.name":"fhuC","gene.annotation":"ferrichrome-iron transport protein","operon.name":"fhuACDB","operon.comments":"ferrichrome-iron transport"}
{"gene.name":"fhuD","gene.annotation":"ferrichrome-iron transport protein","operon.name":"fhuACDB","operon.comments":"ferrichrome-iron transport"}
{"gene.name":"fhuB","gene.annotation":"ferrichrome-iron transport protein","operon.name":"fhuACDB","operon.comments":"ferrichrome-iron transport"}
{"gene.name":"rpsB","gene.annotation":"ribosomal protein S2","operon.name":"rpsB","operon.comments":"ribosomal-protein"}
{"gene.name":"tsf","gene.annotation":"translation elongation factor EF-Ts","operon.name":"rpsB","operon.comments":"ribosomal-protein"}
{"gene.name":"pyrH","gene.annotation":"uridylate kinase","operon.name":"rpsB","operon.comments":"ribosomal-protein"}
{"gene.name":"frr","gene.annotation":"ribosome releasing factor operon?","operon.name":"rpsB","operon.comments":"ribosomal-protein"}
{"gene.name":"lpxD","gene.annotation":"UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase","operon.name":"lpx","operon.comments":"lipid biosynthesis"}
{"gene.name":"fabZ","gene.annotation":"(3R)-hydroxymyristol acyl carrier protein dehydrase","operon.name":"lpx","operon.comments":"lipid biosynthesis"}
{"gene.name":"lpxA","gene.annotation":"acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase","operon.name":"lpx","operon.comments":"lipid biosynthesis"}
{"gene.name":"lpxB","gene.annotation":"lipid-A-disaccharide synthase","operon.name":"lpx","operon.comments":"lipid biosynthesis"}
{"gene.name":"rnhB","gene.annotation":"ribonuclease H II","operon.name":"lpx","operon.comments":"lipid biosynthesis"}
{"gene.name":"dnaE","gene.annotation":"DNA polymerase III, alpha chain","operon.name":"lpx","operon.comments":"lipid biosynthesis"}
{"gene.name":"accA","gene.annotation":"acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha","operon.name":"lpx","operon.comments":"lipid biosynthesis"}
{"gene.name":"proB","gene.annotation":"gamma-glutamate kinase (EC 2.7.2.11)","operon.name":"proBA","operon.comments":"proline biosynthesis"}
{"gene.name":"proA","gene.annotation":"gamma-glutamylphosphate reductase (EC 1.2.1.41)","operon.name":"proBA","operon.comments":"proline biosynthesis"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"codBA","operon.comments":"cytosine transport"}
{"gene.name":"codB","gene.annotation":"cytosine transport protein","operon.name":"codBA","operon.comments":"cytosine transport"}
{"gene.name":"codA","gene.annotation":"cytosine deaminase","operon.name":"codBA","operon.comments":"cytosine transport"}
{"gene.name":"cynT","gene.annotation":"carbonic anhydrase (EC 4.2.1.1)","operon.name":"cynTSX","operon.comments":"cyanate utilization"}
{"gene.name":"cynS","gene.annotation":"cyanate aminohydrolase (EC 3.5.5.3), cyanase","operon.name":"cynTSX","operon.comments":"cyanate utilization"}
{"gene.name":"cynX","gene.annotation":"cyanate transport protein cynX","operon.name":"cynTSX","operon.comments":"cyanate utilization"}
{"gene.name":"lacZ","gene.annotation":"beta-D-galactosidase (EC 3.2.1.23)","operon.name":"lac","operon.comments":"galactoside utilization"}
{"gene.name":"lacY","gene.annotation":"galactoside permease (M protein)","operon.name":"lac","operon.comments":"galactoside utilization"}
{"gene.name":"lacA","gene.annotation":"galactoside acetyltransferase (EC 2.3.1.18)","operon.name":"lac","operon.comments":"galactoside utilization"}
{"gene.name":"339","gene.annotation":"(mhpA) 3-(3-hydroxy-phenyl)propionate hydroxylase (EC 1.14.13.-)","operon.name":"mhp","operon.comments":"catechol dioxygenases"}
{"gene.name":"mhpB","gene.annotation":"2,3-dihydroxyphenylpropionate 1,2-dioxygenase","operon.name":"mhp","operon.comments":"catechol dioxygenases"}
{"gene.name":"341","gene.annotation":"(mhpC) 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase (EC 3.7.1.-)","operon.name":"mhp","operon.comments":"catechol dioxygenases"}
{"gene.name":"342","gene.annotation":"(mhpD) 2-keto-4-pentenoate hydratase (EC 4.2.-.-)","operon.name":"mhp","operon.comments":"catechol dioxygenases"}
{"gene.name":"mhpE","gene.annotation":"4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.-) (HOA)","operon.name":"mhp","operon.comments":"catechol dioxygenases"}
{"gene.name":"344","gene.annotation":"(mhpF) acetaldehyde dehydrogenase (EC 1.2.1.10)","operon.name":"mhp","operon.comments":"catechol dioxygenases"}
{"gene.name":"phoB","gene.annotation":"phosphate regulon transcriptional regulatory protein","operon.name":"phoBR","operon.comments":"positive regulator for the phosphate regulon"}
{"gene.name":"phoR","gene.annotation":"phosphate regulon sensor protein phoR","operon.name":"phoBR","operon.comments":"positive regulator for the phosphate regulon"}
{"gene.name":"queA","gene.annotation":"S-adenosylmethionine:tRNA ribosyltransferase-isomerase","operon.name":"secD","operon.comments":"tRNA modification & protein export"}
{"gene.name":"tgt","gene.annotation":"queuine tRNA-ribosyltransferase (EC 2.4.2.29)","operon.name":"secD","operon.comments":"tRNA modification & protein export"}
{"gene.name":"yajC","gene.annotation":"","operon.name":"secD","operon.comments":"tRNA modification & protein export"}
{"gene.name":"secD","gene.annotation":"protein-export membrane protein SecD","operon.name":"secD","operon.comments":"tRNA modification & protein export"}
{"gene.name":"secF","gene.annotation":"protein-export membrane protein SecF","operon.name":"secD","operon.comments":"tRNA modification & protein export"}
{"gene.name":"cyoA","gene.annotation":"cytochrome o ubiquinol oxidase subunit 11 (EC 1,10,3,-)","operon.name":"cyoABCDE","operon.comments":"cytochrome o ubiquinol oxidase"}
{"gene.name":"cyoB","gene.annotation":"cytochrome o ubiquinol oxidase subunit I (EC 1,10,3,-)","operon.name":"cyoABCDE","operon.comments":"cytochrome o ubiquinol oxidase"}
{"gene.name":"cyoC","gene.annotation":"cytochrome o ubiquinol oxidase subunit 111 (EC 1,10,3,-)","operon.name":"cyoABCDE","operon.comments":"cytochrome o ubiquinol oxidase"}
{"gene.name":"cyoD","gene.annotation":"cytochrome o ubiquinol oxidase operon protein CyoD","operon.name":"cyoABCDE","operon.comments":"cytochrome o ubiquinol oxidase"}
{"gene.name":"cyoE","gene.annotation":"cytochrome o ubiquinol oxidase operon protein CyoE","operon.name":"cyoABCDE","operon.comments":"cytochrome o ubiquinol oxidase"}
{"gene.name":"clpP","gene.annotation":"ATP-dependent clp protease proteolytic subunit","operon.name":"clpPX","operon.comments":"clp protease"}
{"gene.name":"clpX","gene.annotation":"ATP-dependent protease ATPase subunit","operon.name":"clpPX","operon.comments":"clp protease"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"clpPX","operon.comments":"clp protease"}
{"gene.name":"acrA","gene.annotation":"resistance to acriflavine, hydrophobic anibiotics, basic dyes, and detergents","operon.name":"acrAB","operon.comments":"resistance to acriflavine"}
{"gene.name":"acrB","gene.annotation":"resistance to acriflavine, hydrophobic anibiotics, basic dyes, and detergents","operon.name":"acrAB","operon.comments":"resistance to acriflavine"}
{"gene.name":"ybaB","gene.annotation":"hypothetical 12.0 kD protein","operon.name":"recR","operon.comments":"DNA recombination"}
{"gene.name":"recR","gene.annotation":"recombination protein RecR","operon.name":"recR","operon.comments":"DNA recombination"}
{"gene.name":"purE","gene.annotation":"phosphoribosylaminoimidazole carboxylase catalytic chain","operon.name":"purEK","operon.comments":"phosphoribosylaminoimidazole carboxylase"}
{"gene.name":"purK","gene.annotation":"phosphoribosylaminoimidazole carboxylase ATPase subunit","operon.name":"purEK","operon.comments":"phosphoribosylaminoimidazole carboxylase"}
{"gene.name":"561","gene.annotation":"(copR) sensor","operon.name":"copRS","operon.comments":"two-component system"}
{"gene.name":"560","gene.annotation":"(copS) activator","operon.name":"copRS","operon.comments":"two-component system"}
{"gene.name":"fepD","gene.annotation":"ferric enterobactin (enterochelin) uptake","operon.name":"fepDGC","operon.comments":"ferric enterobactin uptake"}
{"gene.name":"fepG","gene.annotation":"ferric enterobactin transport protein","operon.name":"fepDGC","operon.comments":"ferric enterobactin uptake"}
{"gene.name":"fepC","gene.annotation":"ferric enterobactin (enterochelin) uptake; cytoplasmic membrane component","operon.name":"fepDGC","operon.comments":"ferric enterobactin uptake"}
{"gene.name":"entC","gene.annotation":"isochorismate synthase","operon.name":"entCEBA","operon.comments":"enterobactin biosynthesis"}
{"gene.name":"entE","gene.annotation":"enterochelin synthetase component E","operon.name":"entCEBA","operon.comments":"enterobactin biosynthesis"}
{"gene.name":"entB","gene.annotation":"isochorismatase (2,3-dihydro-2,3-dihydroxybenzoate synthase)","operon.name":"entCEBA","operon.comments":"enterobactin biosynthesis"}
{"gene.name":"entA","gene.annotation":"2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase","operon.name":"entCEBA","operon.comments":"enterobactin biosynthesis"}
{"gene.name":"mrdA","gene.annotation":"(pbpA) penicillin-binding protein 2","operon.name":"mrdAB","operon.comments":"responsible for the rod shape"}
{"gene.name":"mrdB","gene.annotation":"(rodA) rod-shape-determining protein","operon.name":"mrdAB","operon.comments":"responsible for the rod shape"}
{"gene.name":"gltJ","gene.annotation":"glutamate/aspartate transport system permease","operon.name":"gltJKL","operon.comments":"glutamate/aspartate transport"}
{"gene.name":"gltK","gene.annotation":"glutamate/aspartate transport system permease","operon.name":"gltJKL","operon.comments":"glutamate/aspartate transport"}
{"gene.name":"gltL","gene.annotation":"glutamate/aspartate transport ATP-binding protein","operon.name":"gltJKL","operon.comments":"glutamate/aspartate transport"}
{"gene.name":"nagB","gene.annotation":"glucosamine-6-phosphate deaminase (EC 5.3.1.10)","operon.name":"nagBACD","operon.comments":"N-acetylglucosamine uptake"}
{"gene.name":"nagA","gene.annotation":"N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)","operon.name":"nagBACD","operon.comments":"N-acetylglucosamine uptake"}
{"gene.name":"nagC","gene.annotation":"repressor for the nag regulon","operon.name":"nagBACD","operon.comments":"N-acetylglucosamine uptake"}
{"gene.name":"nagD","gene.annotation":"","operon.name":"nagBACD","operon.comments":"N-acetylglucosamine uptake"}
{"gene.name":"speF","gene.annotation":"ornithine decarboxylase, inducible","operon.name":"speFpotE","operon.comments":"ornithine uptake"}
{"gene.name":"potE","gene.annotation":"putrescine-ornithine antiporter","operon.name":"speFpotE","operon.comments":"ornithine uptake"}
{"gene.name":"kdpA","gene.annotation":"","operon.name":"kdpABC","operon.comments":"membrane K transport ATPases"}
{"gene.name":"kdpB","gene.annotation":"","operon.name":"kdpABC","operon.comments":"membrane K transport ATPases"}
{"gene.name":"kdpC","gene.annotation":"","operon.name":"kdpABC","operon.comments":"membrane K transport ATPases"}
{"gene.name":"kdpD","gene.annotation":"transmembrane protein","operon.name":"kdpABC","operon.comments":"membrane K transport ATPases"}
{"gene.name":"kdpE","gene.annotation":"cytoplasmic protein (similar to the ORF at 717096 in part)","operon.name":"kdpABC","operon.comments":"membrane K transport ATPases"}
{"gene.name":"sdhC","gene.annotation":"succinate dehydrogenase (EC 1.3.99.1), cytochrome b556","operon.name":"sdhCDAB","operon.comments":"succinate dehydrogenase"}
{"gene.name":"sdhD","gene.annotation":"succinate dehydrogenase (EC 1.3.99.1), hydrophobic subunit","operon.name":"sdhCDAB","operon.comments":"succinate dehydrogenase"}
{"gene.name":"sdhA","gene.annotation":"succinate dehydrogenase (EC 1.3.99.1), flavoprotein subunit","operon.name":"sdhCDAB","operon.comments":"succinate dehydrogenase"}
{"gene.name":"sdhB","gene.annotation":"succinate dehydrogenase (EC 1.3.99.1), iron sulfur protein","operon.name":"sdhCDAB","operon.comments":"succinate dehydrogenase"}
{"gene.name":"sucA","gene.annotation":"2-0xoglutarate dehydrogenase complex (decarboxylase component) (EC 1.2.4.2)","operon.name":"sucABCD","operon.comments":"TCA cycle"}
{"gene.name":"sucB","gene.annotation":"2-0xoglutarate dehydrogenase complex (dihydrolipoyl transsuccinase component) (EC 2.3.1.61)","operon.name":"sucABCD","operon.comments":"TCA cycle"}
{"gene.name":"sucC","gene.annotation":"succinyl-CoA synthetase (EC 6.2.1.5), beta subunit","operon.name":"sucABCD","operon.comments":"TCA cycle"}
{"gene.name":"sucD","gene.annotation":"succinyl-CoA synthetase (EC 6.2.1.5), alpha subunit","operon.name":"sucABCD","operon.comments":"TCA cycle"}
{"gene.name":"cydA","gene.annotation":"cytochrome oxidase d subunit I","operon.name":"cyd","operon.comments":"cytochrome d oxidase subunits I and II"}
{"gene.name":"cydB","gene.annotation":"cytochrome oxidase d subunit II","operon.name":"cyd","operon.comments":"cytochrome d oxidase subunits I and II"}
{"gene.name":"tolQ","gene.annotation":"membrane toporogy","operon.name":"tolQRA","operon.comments":"colicin uptake"}
{"gene.name":"tolR","gene.annotation":"","operon.name":"tolQRA","operon.comments":"colicin uptake"}
{"gene.name":"tolA","gene.annotation":"","operon.name":"tolQRA","operon.comments":"colicin uptake"}
{"gene.name":"tolB","gene.annotation":"","operon.name":"tolQRA","operon.comments":"colicin uptake"}
{"gene.name":"galE","gene.annotation":"UDP-galactose 4-epimerase (5.1.3.2)","operon.name":"gal","operon.comments":"galactose metabolism"}
{"gene.name":"galT","gene.annotation":"galactose-l-phosphate uridylyltransferase (EC 2.7.7.10)","operon.name":"gal","operon.comments":"galactose metabolism"}
{"gene.name":"galK","gene.annotation":"galactokinase (EC 2.7.1.6)","operon.name":"gal","operon.comments":"galactose metabolism"}
{"gene.name":"galM","gene.annotation":"mutarotase","operon.name":"gal","operon.comments":"galactose metabolism"}
{"gene.name":"modA","gene.annotation":"molybdate-binding periplasmic protein","operon.name":"modABC","operon.comments":"molybdate transport"}
{"gene.name":"modB","gene.annotation":"molybdenum transport system permease","operon.name":"modABC","operon.comments":"molybdate transport"}
{"gene.name":"modC","gene.annotation":"molybdenum transport ATP binding","operon.name":"modABC","operon.comments":"molybdate transport"}
{"gene.name":"Regulation","gene.annotation":"biotin operon promoter","operon.name":"bioBFCD","operon.comments":"biotin biosynthesis"}
{"gene.name":"bioB","gene.annotation":"(bioH) biotin synthetase","operon.name":"bioBFCD","operon.comments":"biotin biosynthesis"}
{"gene.name":"bioF","gene.annotation":"7-keto-8-aminopelargonic acid synthetase (EC 2.3.1.47)","operon.name":"bioBFCD","operon.comments":"biotin biosynthesis"}
{"gene.name":"bioC","gene.annotation":"biotin biosynthesis; reaction prior to pimeloyl-CoA","operon.name":"bioBFCD","operon.comments":"biotin biosynthesis"}
{"gene.name":"bioD","gene.annotation":"dethiobiotin synthetase (EC 6.3.3.3)","operon.name":"bioBFCD","operon.comments":"biotin biosynthesis"}
{"gene.name":"moaA","gene.annotation":"molybdenum cofactor biosynthesis protein A","operon.name":"moaABCDE","operon.comments":"molybdenum cofactor biosynthesis"}
{"gene.name":"moaB","gene.annotation":"","operon.name":"moaABCDE","operon.comments":"molybdenum cofactor biosynthesis"}
{"gene.name":"moaC","gene.annotation":"","operon.name":"moaABCDE","operon.comments":"molybdenum cofactor biosynthesis"}
{"gene.name":"moaD","gene.annotation":"molybdopterin-converting factor subunit 1","operon.name":"moaABCDE","operon.comments":"molybdenum cofactor biosynthesis"}
{"gene.name":"moaE","gene.annotation":"molybdopterin-converting factor 16K chain","operon.name":"moaABCDE","operon.comments":"molybdenum cofactor biosynthesis"}
{"gene.name":"glnH","gene.annotation":"periplasmic glutamine-binding protein","operon.name":"glnHPQ","operon.comments":"glutamine transport"}
{"gene.name":"glnP","gene.annotation":"glutamine high-affinity transport system; membrane component","operon.name":"glnHPQ","operon.comments":"glutamine transport"}
{"gene.name":"glnQ","gene.annotation":"glutamine high-affinity transport system","operon.name":"glnHPQ","operon.comments":"glutamine transport"}
{"gene.name":"moeA","gene.annotation":"molybdopterin biosynthesis","operon.name":"moeAB","operon.comments":"molybdopterin biosynthesi"}
{"gene.name":"moeB","gene.annotation":"molybdopterin biosynthesis","operon.name":"moeAB","operon.comments":"molybdopterin biosynthesi"}
{"gene.name":"potF","gene.annotation":"putrescine-binding periplasmic protein","operon.name":"potFGHI","operon.comments":"putrescine transport"}
{"gene.name":"potG","gene.annotation":"","operon.name":"potFGHI","operon.comments":"putrescine transport"}
{"gene.name":"potH","gene.annotation":"transmembrane protein","operon.name":"potFGHI","operon.comments":"putrescine transport"}
{"gene.name":"potI","gene.annotation":"transmembrane protein","operon.name":"potFGHI","operon.comments":"putrescine transport"}
{"gene.name":"artP","gene.annotation":"arginine transport ATP-binding protein","operon.name":"artPIQMJ","operon.comments":"arginine transport"}
{"gene.name":"artI","gene.annotation":"arginine binding periplasmic protein 1","operon.name":"artPIQMJ","operon.comments":"arginine transport"}
{"gene.name":"artQ","gene.annotation":"arginine transport system permease","operon.name":"artPIQMJ","operon.comments":"arginine transport"}
{"gene.name":"artM","gene.annotation":"arginine transport system permease","operon.name":"artPIQMJ","operon.comments":"arginine transport"}
{"gene.name":"artJ","gene.annotation":"arginine binding periplasmic protein 2","operon.name":"artPIQMJ","operon.comments":"arginine transport"}
{"gene.name":"dmsA","gene.annotation":"anaerobic dimethyl sulfoxide reductase chain A","operon.name":"dmsABC","operon.comments":"dimethyl sulfoxide reductase"}
{"gene.name":"dmsB","gene.annotation":"anaerobic dimethyl sulfoxide reductase chain B","operon.name":"dmsABC","operon.comments":"dimethyl sulfoxide reductase"}
{"gene.name":"dmsC","gene.annotation":"anaerobic dimethyl sulfoxide reductase chain C","operon.name":"dmsABC","operon.comments":"dimethyl sulfoxide reductase"}
{"gene.name":"cmk","gene.annotation":"cytidine monophosphate kinase","operon.name":"rpsA","operon.comments":"ribosomal protein"}
{"gene.name":"rpsA","gene.annotation":"ribosomal protein S1","operon.name":"rpsA","operon.comments":"ribosomal protein"}
{"gene.name":"smtA","gene.annotation":"smtA protein","operon.name":"smtAmukFEB","operon.comments":"cell division"}
{"gene.name":"mukF","gene.annotation":"(kicB) killing factor MukF","operon.name":"smtAmukFEB","operon.comments":"cell division"}
{"gene.name":"mukE","gene.annotation":"(kicA) MukE protein","operon.name":"smtAmukFEB","operon.comments":"cell division"}
{"gene.name":"mukB","gene.annotation":"cell division protein MukB","operon.name":"smtAmukFEB","operon.comments":"cell division"}
{"gene.name":"pqiA","gene.annotation":"paraquat-inducible protein A","operon.name":"pqiAB","operon.comments":"paraquat, a superoxide radical-generating agent inducible"}
{"gene.name":"pqiB","gene.annotation":"paraquat-inducible protein B","operon.name":"pqiAB","operon.comments":"paraquat, a superoxide radical-generating agent inducible"}
{"gene.name":"hyaA","gene.annotation":"hydrogenase-1 small chain precursor","operon.name":"hya","operon.comments":"hydrogenase-1"}
{"gene.name":"hyaB","gene.annotation":"hydrogenase-1 large chain","operon.name":"hya","operon.comments":"hydrogenase-1"}
{"gene.name":"hyaC","gene.annotation":"HyaC protein","operon.name":"hya","operon.comments":"hydrogenase-1"}
{"gene.name":"hyaD","gene.annotation":"hydrogenase-1 operon protein HyaD","operon.name":"hya","operon.comments":"hydrogenase-1"}
{"gene.name":"hyaE","gene.annotation":"hydrogenase-1 operon protein HyaE","operon.name":"hya","operon.comments":"hydrogenase-1"}
{"gene.name":"hyaF","gene.annotation":"hydrogenase-1 operon protein HyaF","operon.name":"hya","operon.comments":"hydrogenase-1"}
{"gene.name":"Regulation","gene.annotation":"controled by appR (katF)","operon.name":"appCBA","operon.comments":"cytochrome bd terminal oxidase; stationary phase"}
{"gene.name":"appC","gene.annotation":"cytochrome bd-II oxidase subunit I","operon.name":"appCBA","operon.comments":"cytochrome bd terminal oxidase; stationary phase"}
{"gene.name":"appB","gene.annotation":"cytochrome bd-II oxidase subunit II","operon.name":"appCBA","operon.comments":"cytochrome bd terminal oxidase; stationary phase"}
{"gene.name":"appA","gene.annotation":"periplasmic phosphoanhydride phosphohydrolase precursor","operon.name":"appCBA","operon.comments":"cytochrome bd terminal oxidase; stationary phase"}
{"gene.name":"torC","gene.annotation":"cytochrome c-type protein TorC","operon.name":"torCAD","operon.comments":"part of the respiratory chain of trimethylamine-n-oxide reductase"}
{"gene.name":"torA","gene.annotation":"trimethylamine-N-oxide reductase precursor","operon.name":"torCAD","operon.comments":"part of the respiratory chain of trimethylamine-n-oxide reductase"}
{"gene.name":"torD","gene.annotation":"TorD protein","operon.name":"torCAD","operon.comments":"part of the respiratory chain of trimethylamine-n-oxide reductase"}
{"gene.name":"csgD","gene.annotation":"putative regulatory protein necessary for transcription of the csgBA","operon.name":"csgDEFG","operon.comments":"curli"}
{"gene.name":"csgE","gene.annotation":"assembly/transport component in curli","operon.name":"csgDEFG","operon.comments":"curli"}
{"gene.name":"csgF","gene.annotation":"assembly/transport component in curli","operon.name":"csgDEFG","operon.comments":"curli"}
{"gene.name":"csgG","gene.annotation":"assembly/transport component in curli","operon.name":"csgDEFG","operon.comments":"curli"}
{"gene.name":"csgB","gene.annotation":"nucleation component of curlin monomers","operon.name":"csgBA","operon.comments":"curlin"}
{"gene.name":"csgA","gene.annotation":"major curlin subunit precursor","operon.name":"csgBA","operon.comments":"curlin"}
{"gene.name":"mdoG","gene.annotation":"periplasmic glucans biosynthesis protein MdoG","operon.name":"mdoGH","operon.comments":"biosynthesis of periplasmic membrane-derived oligosaccharides"}
{"gene.name":"mdoH","gene.annotation":"periplasmic glucans biosynthesis protein MdoH","operon.name":"mdoGH","operon.comments":"biosynthesis of periplasmic membrane-derived oligosaccharides"}
{"gene.name":"flgA","gene.annotation":"","operon.name":"flgAMN","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgM","gene.annotation":"","operon.name":"flgAMN","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgN","gene.annotation":"","operon.name":"flgAMN","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgB","gene.annotation":"(flbA) putative flagellar basal-body rod protein FlgB (proximal rod protein)","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgC","gene.annotation":"(flaW) putative flagellar basal-body rod protein FlgC (proximal rod protein)","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgD","gene.annotation":"(flaV) flagellar biosynthesis, initiation of hook assembly","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgE","gene.annotation":"(flaK) flagellar biosynthesis, hook protein","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgF","gene.annotation":"(flaX) flagellar biosynthesis, cell-proximal portion of basal-body rod","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgG","gene.annotation":"(flaL) flagellar biosynthesis, cell-distal portion of basal-body rod","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgH","gene.annotation":"(flaY) flagellar biosynthesis, basal-body outer membrane L (lipopolysaccharide layer) ring protein","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgI","gene.annotation":"(flaM) flagellar biosynthesis, basal-body periplasmic P ring protein","operon.name":"flgBCDEFGHI","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgK","gene.annotation":"(flaS) flagellar biosynthesis; hook-filament junction protein","operon.name":"flgKL","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flgL","gene.annotation":"(flaT) flagellar biosynthesis; hook-filament junction protein","operon.name":"flgKL","operon.comments":"flagellar biosynthesis"}
{"gene.name":"yceD","gene.annotation":"g30k protein","operon.name":"rpmF","operon.comments":"ribosomal protein"}
{"gene.name":"rpmF","gene.annotation":"ribosomal protein L32","operon.name":"rpmF","operon.comments":"ribosomal protein"}
{"gene.name":"fabD","gene.annotation":"malonyl CoA-acyl carrier protein transacylase","operon.name":"fabDGacpP","operon.comments":"fatty acid biosynthesis"}
{"gene.name":"fabG","gene.annotation":"3-ketoacyl-acyl carrier protein reductase","operon.name":"fabDGacpP","operon.comments":"fatty acid biosynthesis"}
{"gene.name":"acpP","gene.annotation":"acyl carrier protein","operon.name":"fabDGacpP","operon.comments":"fatty acid biosynthesis"}
{"gene.name":"phoP","gene.annotation":"regulator","operon.name":"phoPQ","operon.comments":"two-component system"}
{"gene.name":"phoQ","gene.annotation":"sensor","operon.name":"phoPQ","operon.comments":"two-component system"}
{"gene.name":"umuD","gene.annotation":"","operon.name":"umuDC","operon.comments":"SOS response"}
{"gene.name":"umuC","gene.annotation":"","operon.name":"umuDC","operon.comments":"SOS response"}
{"gene.name":"dadA","gene.annotation":"D-amino acid dehydrogenase minor subunit","operon.name":"dadAX","operon.comments":"smaller subunit of D-amino acid dehydrogenase"}
{"gene.name":"dadX","gene.annotation":"catabolic alanine racemase","operon.name":"dadAX","operon.comments":"smaller subunit of D-amino acid dehydrogenase"}
{"gene.name":"hemA","gene.annotation":"delta-aminolevulinate synthase glutamyl-tRNA reductase","operon.name":"kdsA","operon.comments":"3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide"}
{"gene.name":"prfA","gene.annotation":"peptide chain release factor 1","operon.name":"kdsA","operon.comments":"3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide"}
{"gene.name":"hemK","gene.annotation":"possible protoporphyrinogen oxidase","operon.name":"kdsA","operon.comments":"3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide"}
{"gene.name":"1186","gene.annotation":"o130","operon.name":"kdsA","operon.comments":"3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide"}
{"gene.name":"ychA","gene.annotation":"hypothetical protein","operon.name":"kdsA","operon.comments":"3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide"}
{"gene.name":"kdsA ","gene.annotation":"3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase","operon.name":"kdsA","operon.comments":"3-deoxy-D-manno-octulosonic acid metabolism and biosynthesis of enterobacterial lipopolysaccharide"}
{"gene.name":"narX","gene.annotation":"nitrate/nitrite sensor protein narX","operon.name":"narXL","operon.comments":"two-compoment system"}
{"gene.name":"narL","gene.annotation":"nitrate/nitrite response regulator protein narL","operon.name":"narXL","operon.comments":"two-compoment system"}
{"gene.name":"narG","gene.annotation":"nitrate reductase alpha-subunit precursor","operon.name":"narGHJI","operon.comments":"nitrate reductase"}
{"gene.name":"narH","gene.annotation":"respiratory nitrate reductase 1 beta chain","operon.name":"narGHJI","operon.comments":"nitrate reductase"}
{"gene.name":"narJ","gene.annotation":"respiratory nitrate reductase 1 delta chain","operon.name":"narGHJI","operon.comments":"nitrate reductase"}
{"gene.name":"narI","gene.annotation":"respiratory nitrate reductase 1 gamma chain","operon.name":"narGHJI","operon.comments":"nitrate reductase"}
{"gene.name":"oppA","gene.annotation":"periplasmic oligopeptide binding protein","operon.name":"oppABCDF","operon.comments":"oligopeptide transport"}
{"gene.name":"oppB","gene.annotation":"oligopeptide transport system permease protein","operon.name":"oppABCDF","operon.comments":"oligopeptide transport"}
{"gene.name":"oppC","gene.annotation":"oligopeptide transport system permease protein","operon.name":"oppABCDF","operon.comments":"oligopeptide transport"}
{"gene.name":"oppD","gene.annotation":"oligopeptide transport ATP-binding protein","operon.name":"oppABCDF","operon.comments":"oligopeptide transport"}
{"gene.name":"oppF","gene.annotation":"oligopeptide transport ATP-binding protein","operon.name":"oppABCDF","operon.comments":"oligopeptide transport"}
{"gene.name":"trpE","gene.annotation":"anthranilate synthase component I (EC 4.1.3.27)","operon.name":"trp","operon.comments":"tryptophan biosynthesis"}
{"gene.name":"trpD","gene.annotation":"glutamine amidotransferase (EC 4.1.3.27) and phosphoribosylanthranilate transferase (EC 2.4.2.18)","operon.name":"trp","operon.comments":"tryptophan biosynthesis"}
{"gene.name":"trpC","gene.annotation":"N-(5-phosphoribosyl)anthranilate isomerase (EC 5.3.1.24) and indole-3-glycerolphosphate synthetase (EC 4.1.1.48)","operon.name":"trp","operon.comments":"tryptophan biosynthesis"}
{"gene.name":"trpB","gene.annotation":"tryptophan synthase (EC 4.2.1.20), B protein","operon.name":"trp","operon.comments":"tryptophan biosynthesis"}
{"gene.name":"trpA","gene.annotation":"tryptophan synthase (EC 4.2.1.20), A protein","operon.name":"trp","operon.comments":"tryptophan biosynthesis"}
{"gene.name":"pyrF","gene.annotation":"orotidine 5' monophosphate (OMP) decarboxylase","operon.name":"pyrF","operon.comments":"OMP decarboxylase"}
{"gene.name":"yciH","gene.annotation":"hypothetical 11.4 kD protein","operon.name":"pyrF","operon.comments":"OMP decarboxylase"}
{"gene.name":"sapA","gene.annotation":"peptide transport periplasmic protein SapA","operon.name":"sap","operon.comments":"peptide uptake"}
{"gene.name":"sapB","gene.annotation":"peptide transport system permease protein SapB","operon.name":"sap","operon.comments":"peptide uptake"}
{"gene.name":"sapC","gene.annotation":"peptide transport system permease protein SapC","operon.name":"sap","operon.comments":"peptide uptake"}
{"gene.name":"sapD","gene.annotation":"peptide transport system atp-binding protein SapD","operon.name":"sap","operon.comments":"peptide uptake"}
{"gene.name":"sapF","gene.annotation":"peptide transport system ATP-binding protein SapF","operon.name":"sap","operon.comments":"peptide uptake"}
{"gene.name":"pspA","gene.annotation":"shock protein, associated with inner membrane","operon.name":"pspABCDE","operon.comments":"phage shock protein"}
{"gene.name":"pspB","gene.annotation":"shock protein B","operon.name":"pspABCDE","operon.comments":"phage shock protein"}
{"gene.name":"pspC","gene.annotation":"shock protein activates psp operon expression","operon.name":"pspABCDE","operon.comments":"phage shock protein"}
{"gene.name":"pspD","gene.annotation":"shock protein D","operon.name":"pspABCDE","operon.comments":"phage shock protein"}
{"gene.name":"pspE","gene.annotation":"shock protein E","operon.name":"pspABCDE","operon.comments":"phage shock protein"}
{"gene.name":"tehA","gene.annotation":"tellurite resistance protein TehA","operon.name":"tehAB","operon.comments":"potassium tellurite resistance"}
{"gene.name":"tehB","gene.annotation":"tellurite resistance protein TehB","operon.name":"tehAB","operon.comments":"potassium tellurite resistance"}
{"gene.name":"narZ","gene.annotation":"second nitrate reductase subunit","operon.name":"narZYWV","operon.comments":"nitrate reductase"}
{"gene.name":"narY","gene.annotation":"","operon.name":"narZYWV","operon.comments":"nitrate reductase"}
{"gene.name":"narW","gene.annotation":"","operon.name":"narZYWV","operon.comments":"nitrate reductase"}
{"gene.name":"narV","gene.annotation":"","operon.name":"narZYWV","operon.comments":"nitrate reductase"}
{"gene.name":"fdnG","gene.annotation":"formate dehydrogenase nitrate-inducible major subunit","operon.name":"fdnGHI","operon.comments":"formate dehydrogenase"}
{"gene.name":"fdnH","gene.annotation":"formate dehydrogenase nitrate-inducible beta subunit","operon.name":"fdnGHI","operon.comments":"formate dehydrogenase"}
{"gene.name":"fdnI","gene.annotation":"formate dehydrogenase nitrate-inducible cytochrome b556 subunit","operon.name":"fdnGHI","operon.comments":"formate dehydrogenase"}
{"gene.name":"hipB","gene.annotation":"HipB protein","operon.name":"hip","operon.comments":"high-frequency persistence to the lethal effects"}
{"gene.name":"hipA","gene.annotation":"HipA protein","operon.name":"hip","operon.comments":"high-frequency persistence to the lethal effects"}
{"gene.name":"marR","gene.annotation":"multiple antibiotic resistance protein MarR","operon.name":"marRAB","operon.comments":"antibiotic resistance and oxidative stress genes"}
{"gene.name":"marA","gene.annotation":"multiple antibiotic resistance protein MarA","operon.name":"marRAB","operon.comments":"antibiotic resistance and oxidative stress genes"}
{"gene.name":"marB","gene.annotation":"multiple antibiotic resistance protein MarB","operon.name":"marRAB","operon.comments":"antibiotic resistance and oxidative stress genes"}
{"gene.name":"Regulation","gene.annotation":"transcription start; similar to phage P22 immC sequence","operon.name":"dicB","operon.comments":"cell division control"}
{"gene.name":"ydfA","gene.annotation":"hypothetical 5.8 kD protein","operon.name":"dicB","operon.comments":"cell division control"}
{"gene.name":"ydfB","gene.annotation":"","operon.name":"dicB","operon.comments":"cell division control"}
{"gene.name":"ydfC","gene.annotation":"hypothetical 8.3 kD protein","operon.name":"dicB","operon.comments":"cell division control"}
{"gene.name":"dicB","gene.annotation":"cell division inhibitor","operon.name":"dicB","operon.comments":"cell division control"}
{"gene.name":"ydfD","gene.annotation":"hypothetical 6.8 kD protein","operon.name":"dicB","operon.comments":"cell division control"}
{"gene.name":"ydfE","gene.annotation":"35 kD YdfE","operon.name":"dicB","operon.comments":"cell division control"}
{"gene.name":"rstA","gene.annotation":"(urpT) response regulator homolog","operon.name":"rst","operon.comments":"(urp) two-component system"}
{"gene.name":"rstB","gene.annotation":"(uspT) sensor kinase homolog","operon.name":"rst","operon.comments":"(urp) two-component system"}
{"gene.name":"uidA","gene.annotation":"(gusA) glucuronidase","operon.name":"uidABC","operon.comments":"beta-glucuronidase"}
{"gene.name":"uidB","gene.annotation":"(gusB) glucuronide permease","operon.name":"uidABC","operon.comments":"beta-glucuronidase"}
{"gene.name":"gusC","gene.annotation":"(uidC) membrane-associated protein","operon.name":"uidABC","operon.comments":"beta-glucuronidase"}
{"gene.name":"malX","gene.annotation":"phosphotransferase system enzyme II","operon.name":"malXY","operon.comments":"maltose metabolism"}
{"gene.name":"malY","gene.annotation":"abolishing the endogenous induction of the maltose system","operon.name":"malXY","operon.comments":"maltose metabolism"}
{"gene.name":"pdxH","gene.annotation":"pyridoxamine 5'-phosphate oxidase","operon.name":"pdxH-tyrS","operon.comments":"tRNA synthetase & oxidase"}
{"gene.name":"tyrS","gene.annotation":"transfer RNA-Tyr synthetase","operon.name":"pdxH-tyrS","operon.comments":"tRNA synthetase & oxidase"}
{"gene.name":"btuC","gene.annotation":"vitamin Bl2 transport; cytoplasmic membrane","operon.name":"btuCED","operon.comments":"vitamin Bl2 transport"}
{"gene.name":"btuE","gene.annotation":"periplasmic protein","operon.name":"btuCED","operon.comments":"vitamin Bl2 transport"}
{"gene.name":"btuD","gene.annotation":"vitamin Bl2 transport, membrane-associated protein","operon.name":"btuCED","operon.comments":"vitamin Bl2 transport"}
{"gene.name":"pheS","gene.annotation":"phenylalanine tRNA synthetase (EC 6.1.1.20), alpha subunit","operon.name":"pheST","operon.comments":"phenylalanine tRNA synthetase"}
{"gene.name":"pheT","gene.annotation":"phenylalanine tRNA synthetase (EC 6.1.1.20), beta subunit","operon.name":"pheST","operon.comments":"phenylalanine tRNA synthetase"}
{"gene.name":"celA","gene.annotation":"unknown product","operon.name":"celABCDF","operon.comments":"cellobiose uptake"}
{"gene.name":"celB","gene.annotation":"PEP dependent phosphotransferase enzyme II cellobiose","operon.name":"celABCDF","operon.comments":"cellobiose uptake"}
{"gene.name":"celC","gene.annotation":"enzyme III - cellobiose","operon.name":"celABCDF","operon.comments":"cellobiose uptake"}
{"gene.name":"celD","gene.annotation":"repressor of the cel opern","operon.name":"celABCDF","operon.comments":"cellobiose uptake"}
{"gene.name":"celF","gene.annotation":"phospho-beta-blucosidase","operon.name":"celABCDF","operon.comments":"cellobiose uptake"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"manXYZ","operon.comments":"mannose uptake"}
{"gene.name":"manX","gene.annotation":"mannose permease subunit III-Man","operon.name":"manXYZ","operon.comments":"mannose uptake"}
{"gene.name":"manY","gene.annotation":"mannose permease subunit II-P-Man","operon.name":"manXYZ","operon.comments":"mannose uptake"}
{"gene.name":"manZ","gene.annotation":"mannose permease subunit II-M-Man","operon.name":"manXYZ","operon.comments":"mannose uptake"}
{"gene.name":"edd","gene.annotation":"6-phosphogluconate dehydratase","operon.name":"edd-eda","operon.comments":"Entner-Doudoroff pathway"}
{"gene.name":"eda","gene.annotation":"KDPG aldolase","operon.name":"edd-eda","operon.comments":"Entner-Doudoroff pathway"}
{"gene.name":"ruvA","gene.annotation":"holliday junction DNA helicase RuvA","operon.name":"ruvAB","operon.comments":"DNA repair and recombination"}
{"gene.name":"ruvB","gene.annotation":"holliday junction DNA helicase RuvB","operon.name":"ruvAB","operon.comments":"DNA repair and recombination"}
{"gene.name":"1848","gene.annotation":"(flhB) flagellar biosynthesis protein","operon.name":"flhBA","operon.comments":"flagellar biosynthesis"}
{"gene.name":"flhA","gene.annotation":"flagellar biosynthesis protein","operon.name":"flhBA","operon.comments":"flagellar biosynthesis"}
{"gene.name":"tar","gene.annotation":"(cheM) ethyl-accepting chemotaxis protein 11, chemoreceptor for aspartate","operon.name":"cheRBYZ","operon.comments":"motilily and chemotaxis"}
{"gene.name":"tap","gene.annotation":"methyl-accepting chemotaxis protein IV, peptide receptor","operon.name":"cheRBYZ","operon.comments":"motilily and chemotaxis"}
{"gene.name":"cheR","gene.annotation":"response regulator for chemotaxis; protein glutamate methyltransferase activity (EC 2.1.1.80) methylates receptors","operon.name":"cheRBYZ","operon.comments":"motilily and chemotaxis"}
{"gene.name":"cheB","gene.annotation":"response regulator for chemotaxis (cheA sensor); protein methyl-esterase (EC 3.1.1.61) demethylates receptors","operon.name":"cheRBYZ","operon.comments":"motilily and chemotaxis"}
{"gene.name":"cheY","gene.annotation":"response regulator for chemotactic response (cheA sensor); switch regulator placing it in counterclockwisc state","operon.name":"cheRBYZ","operon.comments":"motilily and chemotaxis"}
{"gene.name":"cheZ","gene.annotation":"chemotactic response; CheY protein phosphatase; antagonist of CheY as switch regulator","operon.name":"cheRBYZ","operon.comments":"motilily and chemotaxis"}
{"gene.name":"motA","gene.annotation":"proton conductor component of motor; no effect on switching","operon.name":"motABcheAW","operon.comments":"chemotaxis"}
{"gene.name":"motB","gene.annotation":"enables flagellar motor rotation, linking torque machillery to cell wall; no effect on switching","operon.name":"motABcheAW","operon.comments":"chemotaxis"}
{"gene.name":"cheA","gene.annotation":"sensor for cheY and cheB chemotactic response; histidine protein kinase (EC 2.7.1.-)","operon.name":"motABcheAW","operon.comments":"chemotaxis"}
{"gene.name":"cheW","gene.annotation":"positive regulator of CheA protein activity","operon.name":"motABcheAW","operon.comments":"chemotaxis"}
{"gene.name":"flhD","gene.annotation":"(flbB) flagellar transcriptional activator","operon.name":"flhDC","operon.comments":"flagellar transcriptional activators"}
{"gene.name":"flhC","gene.annotation":"(flaI) flagellar transcriptional activator","operon.name":"flhDC","operon.comments":"flagellar transcriptional activators"}
{"gene.name":"otsB","gene.annotation":"trehalose-6-phosphate phosphatase","operon.name":"otsBA","operon.comments":"trehalose synthesis"}
{"gene.name":"otsA","gene.annotation":"trehalose-6-phosphate synthase","operon.name":"otsBA","operon.comments":"trehalose synthesis"}
{"gene.name":"araF ","gene.annotation":"L-arabinose binding preprotein","operon.name":"araFGH","operon.comments":"periplasmic binding protein inner membrane protein controled by araC"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"araFGH","operon.comments":"periplasmic binding protein inner membrane protein controled by araC"}
{"gene.name":"araG","gene.annotation":"high-affinity L-arabinose transport system","operon.name":"araFGH","operon.comments":"periplasmic binding protein inner membrane protein controled by araC"}
{"gene.name":"1867","gene.annotation":"","operon.name":"araFGH","operon.comments":"periplasmic binding protein inner membrane protein controled by araC"}
{"gene.name":"araH","gene.annotation":"high-affinity L-arabinose transport system; membrane protein","operon.name":"araFGH","operon.comments":"periplasmic binding protein inner membrane protein controled by araC"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"araFGH","operon.comments":"periplasmic binding protein inner membrane protein controled by araC"}
{"gene.name":"uvrY","gene.annotation":"23.9 kD protein","operon.name":"uvrYC","operon.comments":"DNA repair"}
{"gene.name":"uvrC","gene.annotation":"excinuclease ABC subunit C","operon.name":"uvrYC","operon.comments":"DNA repair"}
{"gene.name":"fliA","gene.annotation":"(flaD) RNA polymerase sigma factor for flagellar operon","operon.name":"fliAZY","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliZ","gene.annotation":"FliZ protein","operon.name":"fliAZY","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliY","gene.annotation":"member of the extracellular solute-binding protein family 3","operon.name":"fliAZY","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliD","gene.annotation":"","operon.name":"fliDST","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliS","gene.annotation":"","operon.name":"fliDST","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliT","gene.annotation":"","operon.name":"fliDST","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliF","gene.annotation":"(flaBI) flagellar m-ring protein","operon.name":"fliFGHIJK","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliG","gene.annotation":"(flaBII) flagellar motor switch protein FliG","operon.name":"fliFGHIJK","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliH","gene.annotation":"(flaBIII) flagellar assembly protein FliH","operon.name":"fliFGHIJK","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliI","gene.annotation":"(flaC) flagellar biosynthesis; export of flagellar proteins?","operon.name":"fliFGHIJK","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliJ","gene.annotation":"(flaO) flagellar biosynthesis","operon.name":"fliFGHIJK","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliK","gene.annotation":"(flaE) flagellar biosynthesis, hook length control","operon.name":"fliFGHIJK","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliL","gene.annotation":"(flaAI) FliL protein","operon.name":"fliLMNOPQR","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliM","gene.annotation":"(flaAII) flagellar motor switch protein FliM","operon.name":"fliLMNOPQR","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliN","gene.annotation":"(motD) flagellar motor switch protein FliN","operon.name":"fliLMNOPQR","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliO","gene.annotation":"(flbD) flagellar protein FliO","operon.name":"fliLMNOPQR","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliP","gene.annotation":"(flaR) flagellar biosynthesis","operon.name":"fliLMNOPQR","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliQ","gene.annotation":"(flaQ) flagellar biosynthesis","operon.name":"fliLMNOPQR","operon.comments":"flagellar biosynthesis"}
{"gene.name":"fliR","gene.annotation":"(flaP) flagellar biosynthesis","operon.name":"fliLMNOPQR","operon.comments":"flagellar biosynthesis"}
{"gene.name":"dcm","gene.annotation":"DNA-cytosine methyltransferase","operon.name":"dcm-vsr","operon.comments":"DNA processing"}
{"gene.name":"vsr","gene.annotation":"very short patch repair by repairing the mismatches in favor of the G-containing strand","operon.name":"dcm-vsr","operon.comments":"DNA processing"}
{"gene.name":"cobU","gene.annotation":"cobinamide kinase and guanylyltransferase","operon.name":"cobUST","operon.comments":"cobalamin (coenzyme B12) biosynthesis"}
{"gene.name":"cobS","gene.annotation":"cobalamin (5'-phosphate) synthase","operon.name":"cobUST","operon.comments":"cobalamin (coenzyme B12) biosynthesis"}
{"gene.name":"cobT","gene.annotation":"nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyl transferase","operon.name":"cobUST","operon.comments":"cobalamin (coenzyme B12) biosynthesis"}
{"gene.name":"hisG","gene.annotation":"ATP phosphoribosyltransferase (EC 2.4.2.17)","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"hisD","gene.annotation":"L-histidinol:NAD+ oxidoreductase (EC 1.1.1.23)","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"hisC","gene.annotation":"histidinol-phosphate aminotransferase (EC 2.6.1.9)","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"hisB","gene.annotation":"imidazoleglycerolphosphate dehydratase (EC 4.2.1.19) and histidinol phosphate phosphatase (EC 3.1.3.15)","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"hisH","gene.annotation":"amidotransferase (EC 2.4.2.-)","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"hisA","gene.annotation":"N-(5'-phospho-L-ribosyl-formimino)-5-amino-l-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase (EC 5.3.1.16)","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"hisF","gene.annotation":"cyclase","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"hisI","gene.annotation":"(hisIE) phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) and phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)","operon.name":"hisGDCBHAFE","operon.comments":"histidine biosynthesis"}
{"gene.name":"rfbB","gene.annotation":"TDP-glucose oxidoreductase","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"rfbD","gene.annotation":"TDP-rhamnose synthetase","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"rfbA","gene.annotation":"TDP-glucose pyrophosphorylase","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"rfbC","gene.annotation":"","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"rfbX","gene.annotation":"putative O-antigen transporter","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"yefE","gene.annotation":"hypothetical 43.0 kD protein; putative Galf synthesis pathway protein","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"rfc","gene.annotation":"putative O-antigen polymerase","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"yefG","gene.annotation":"hypothetical 37.8 kD protein; putative Galf transferase","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"yefH","gene.annotation":"putative O-acetyl transferase","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"yefI","gene.annotation":"putative glucose transferase","operon.name":"rfb","operon.comments":"O-specific lipopolysaccharide biosynthesis"}
{"gene.name":"dcd","gene.annotation":"deoxycytidine triphosphate deaminase","operon.name":"dcd","operon.comments":"deoxycytidine triphosphate deaminase"}
{"gene.name":"yegA","gene.annotation":"ORF; may be in an operon with dcd gene","operon.name":"dcd","operon.comments":"deoxycytidine triphosphate deaminase"}
{"gene.name":"baeS","gene.annotation":"kinase","operon.name":"baeSR","operon.comments":"two-component system"}
{"gene.name":"baeR","gene.annotation":"regulator","operon.name":"baeSR","operon.comments":"two-component system"}
{"gene.name":"gatY","gene.annotation":"unknown","operon.name":"gat","operon.comments":"galactitol uptake"}
{"gene.name":"gatZ","gene.annotation":"unknown","operon.name":"gat","operon.comments":"galactitol uptake"}
{"gene.name":"gatA","gene.annotation":"EIIA domain;PTS-dependent Gat transport and phosphorylation","operon.name":"gat","operon.comments":"galactitol uptake"}
{"gene.name":"gatB","gene.annotation":"EIIB","operon.name":"gat","operon.comments":"galactitol uptake"}
{"gene.name":"gatC","gene.annotation":"EIIC","operon.name":"gat","operon.comments":"galactitol uptake"}
{"gene.name":"gatD","gene.annotation":"galactitol-1-phosphate dehydrogenase","operon.name":"gat","operon.comments":"galactitol uptake"}
{"gene.name":"mglB","gene.annotation":"galactose-binding protein; receptor for galactose taxis","operon.name":"mglBA","operon.comments":"galactose transport"}
{"gene.name":"mglA","gene.annotation":"methyl-galactoside transport and galactose taxis, cytoplasmic membrane protein","operon.name":"mglBA","operon.comments":"galactose transport"}
{"gene.name":"mglC","gene.annotation":"methyl-galactoside transport and galactose taxis","operon.name":"mglBA","operon.comments":"galactose transport"}
{"gene.name":"fruB","gene.annotation":"fructose-specific IIBC component","operon.name":"fru","operon.comments":"fructose uptake"}
{"gene.name":"fruK","gene.annotation":"1-phosphofructokinase","operon.name":"fru","operon.comments":"fructose uptake"}
{"gene.name":"fruA","gene.annotation":"fructose-specific IIA/FPR component","operon.name":"fru","operon.comments":"fructose uptake"}
{"gene.name":"ccmA","gene.annotation":"ABC-type ATP-dependent transporter heme exporter protein A","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"ccmB","gene.annotation":"heme exporter protein B","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"ccmC","gene.annotation":"heme exporter protein C","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"ccmD","gene.annotation":"heme exporter protein D","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"ccmE","gene.annotation":"required for the biogenesis of c-type cytochromes","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"ccmF","gene.annotation":"required for the biogenesis of c-type cytochromes","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"dsbE","gene.annotation":"(ccmG) probable thioredoxin","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"ccmH","gene.annotation":"required for the biogenesis of c-type cytochromes","operon.name":"ccmABCDEFGH","operon.comments":"biogenesis of c-type cytochrome"}
{"gene.name":"napA","gene.annotation":"probable nitrate reductase","operon.name":"napAGHBC","operon.comments":"electron transfer"}
{"gene.name":"napG","gene.annotation":"ferredoxin-type protein","operon.name":"napAGHBC","operon.comments":"electron transfer"}
{"gene.name":"napH","gene.annotation":"ferredoxin-type protein","operon.name":"napAGHBC","operon.comments":"electron transfer"}
{"gene.name":"napB","gene.annotation":"cytochrome c-type protein","operon.name":"napAGHBC","operon.comments":"electron transfer"}
{"gene.name":"napC","gene.annotation":"cytochrome c-type protein","operon.name":"napAGHBC","operon.comments":"electron transfer"}
{"gene.name":"ada","gene.annotation":"O6-methylguanine-DNA methyltransferase; regulatory protein which activates the transcription of alkA, alkB and aidB","operon.name":"ada-alkB","operon.comments":"DNA repair"}
{"gene.name":"alkB","gene.annotation":"AlkB protein; repairing DNA alkylation damage","operon.name":"ada-alkB","operon.comments":"DNA repair"}
{"gene.name":"atoS","gene.annotation":"kinase","operon.name":"atoSC","operon.comments":"two-component system"}
{"gene.name":"atoC","gene.annotation":"regulator; ornithine decarboxylase antizyme","operon.name":"atoSC","operon.comments":"two-component system"}
{"gene.name":"atoD","gene.annotation":"acetyl-CoA:acetoacetyl-CoA transferase (EC 2.8.3.8) subunit A","operon.name":"atoDAB","operon.comments":"short-chain fatty acids metabolism"}
{"gene.name":"atoA","gene.annotation":"acetyl-CoA:acetoacetyl-CoA transferase (EC 2.8.3.8) subunit B","operon.name":"atoDAB","operon.comments":"short-chain fatty acids metabolism"}
{"gene.name":"atoB","gene.annotation":"acetyl-CoA acetyltransferase (EC 2.3.1.9)","operon.name":"atoDAB","operon.comments":"short-chain fatty acids metabolism"}
{"gene.name":"nrdA","gene.annotation":"ribonucleoside diphosphate reductase B1 subunit","operon.name":"nrdAB","operon.comments":"ribonucleoside diphosphate reductase"}
{"gene.name":"nrdB","gene.annotation":"ribonucleoside diphosphate reductase B2 subunit","operon.name":"nrdAB","operon.comments":"ribonucleoside diphosphate reductase"}
{"gene.name":"glpT","gene.annotation":"sn-glycerol-3-phosphate permease","operon.name":"glpTQ","operon.comments":"sn-glycerol-3-phosphate uptake"}
{"gene.name":"glpQ","gene.annotation":"glycerophosphodiester diesterase (EC 3.1.4.46)","operon.name":"glpTQ","operon.comments":"sn-glycerol-3-phosphate uptake"}
{"gene.name":"glpA","gene.annotation":"glycerol-3-phosphate dehydrogenase subunit A","operon.name":"glpABC","operon.comments":"glycerol-3-phosphate dehydrogenase"}
{"gene.name":"glpB","gene.annotation":"glycerol-3-phosphate dehydrogenase subunit B","operon.name":"glpABC","operon.comments":"glycerol-3-phosphate dehydrogenase"}
{"gene.name":"glpC","gene.annotation":"glycerol-3-phosphate dehydrogenase subunit C","operon.name":"glpABC","operon.comments":"glycerol-3-phosphate dehydrogenase"}
{"gene.name":"menF","gene.annotation":"","operon.name":"menFDBCE","operon.comments":"menaquinone (vitamin K2) biosynthesis"}
{"gene.name":"menD","gene.annotation":"","operon.name":"menFDBCE","operon.comments":"menaquinone (vitamin K2) biosynthesis"}
{"gene.name":"yfbB","gene.annotation":"","operon.name":"menFDBCE","operon.comments":"menaquinone (vitamin K2) biosynthesis"}
{"gene.name":"menB","gene.annotation":"","operon.name":"menFDBCE","operon.comments":"menaquinone (vitamin K2) biosynthesis"}
{"gene.name":"menC","gene.annotation":"OSB synthase; o-succinylbenzoate synthase","operon.name":"menFDBCE","operon.comments":"menaquinone (vitamin K2) biosynthesis"}
{"gene.name":"menE","gene.annotation":"OSB-CoA synthase; o-succinylbenzoate-CoA synthase","operon.name":"menFDBCE","operon.comments":"menaquinone (vitamin K2) biosynthesis"}
{"gene.name":"nuoA","gene.annotation":"NADH dehydrogenase I, subunit NuoA","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoB","gene.annotation":"NADH dehydrogenase I, subunit NuoB","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"2244","gene.annotation":"(nuoD) NADH dehydrogenase I, subunit NuoD","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoE","gene.annotation":"NADH dehydrogenase I, subunit NuoE","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoF","gene.annotation":"NADH dehydrogenase I, subunit NuoF","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoG","gene.annotation":"NADH dehydrogenase I, subunit NuoG","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoH","gene.annotation":"NADH dehydrogenase I, subunit NuoH","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoI","gene.annotation":"NADH dehydrogenase I, subunit NuoI","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoJ","gene.annotation":"NADH dehydrogenase I, subunit NuoJ","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoK","gene.annotation":"NADH dehydrogenase I, subunit NuoK","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoL","gene.annotation":"NADH dehydrogenase I, subunit NuoL","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoM","gene.annotation":"NADH dehydrogenase I, subunit NuoM","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"nuoN","gene.annotation":"NADH dehydrogenase I, subunit NuoN","operon.name":"nuo","operon.comments":"NADH dehydrogenase"}
{"gene.name":"ackA","gene.annotation":"acetate kinase","operon.name":"ackA-pta","operon.comments":"the activation of acetate to acetyl CoA"}
{"gene.name":"pta","gene.annotation":"phosphoacetyltransferase","operon.name":"ackA-pta","operon.comments":"the activation of acetate to acetyl CoA"}
{"gene.name":"hisM","gene.annotation":"histidine transport system permease protein HisM","operon.name":"hisMP","operon.comments":"histidine transport"}
{"gene.name":"hisP ","gene.annotation":"histidine transport ATP-binding protein HisP","operon.name":"hisMP","operon.comments":"histidine transport"}
{"gene.name":"cvpA","gene.annotation":"dedE;colicin V production protein","operon.name":"purF","operon.comments":"de novo purine nucleotide biosynthes"}
{"gene.name":"purF","gene.annotation":"amidophosphoribosyltransferase (EC 2.4.2.14)","operon.name":"purF","operon.comments":"de novo purine nucleotide biosynthes"}
{"gene.name":"ubiX","gene.annotation":"dedF;3-octaprenyl-4-hydroxybenzoate carboxy-lyase","operon.name":"purF","operon.comments":"de novo purine nucleotide biosynthes"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"purF","operon.comments":"de novo purine nucleotide biosynthes"}
{"gene.name":"folC","gene.annotation":"(dedC) folylpolyglutamate synthase (EC 6.3.2.17)","operon.name":"dedCD","operon.comments":"folylpolyglutamate synthase"}
{"gene.name":"dedD","gene.annotation":"DedD protein","operon.name":"dedCD","operon.comments":"folylpolyglutamate synthase"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"dedCD","operon.comments":"folylpolyglutamate synthase"}
{"gene.name":"pdxB","gene.annotation":"pseudouridine synthase I","operon.name":"hisT","operon.comments":"pseudouridine synthase"}
{"gene.name":"usg","gene.annotation":"(usg1) Usg protein","operon.name":"hisT","operon.comments":"pseudouridine synthase"}
{"gene.name":"truA","gene.annotation":"(hisT) pseudouridine synthase 1","operon.name":"hisT","operon.comments":"pseudouridine synthase"}
{"gene.name":"dedA","gene.annotation":"Dsg protein","operon.name":"hisT","operon.comments":"pseudouridine synthase"}
{"gene.name":"accD","gene.annotation":"(dedB) acetyl-CoA carboxylase beta subunit","operon.name":"hisT","operon.comments":"pseudouridine synthase"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"hisT","operon.comments":"pseudouridine synthase"}
{"gene.name":"dsdX","gene.annotation":"probable permease for an unknown substrate","operon.name":"dsdXA","operon.comments":"D-serine uptake"}
{"gene.name":"dsdA","gene.annotation":"D-serine deaminase","operon.name":"dsdXA","operon.comments":"D-serine uptake"}
{"gene.name":"xapA","gene.annotation":"xanthosine phosphorylase","operon.name":"xapAB","operon.comments":"xanthosine uptake"}
{"gene.name":"xapB","gene.annotation":"xanthosine permease","operon.name":"xapAB","operon.comments":"xanthosine uptake"}
{"gene.name":"ptsH","gene.annotation":"sugar phosphotransferase HPr","operon.name":"pts","operon.comments":"sugar uptake"}
{"gene.name":"ptsI","gene.annotation":"enzyme I","operon.name":"pts","operon.comments":"sugar uptake"}
{"gene.name":"crr","gene.annotation":"enzyme III for glucose","operon.name":"pts","operon.comments":"sugar uptake"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"pts","operon.comments":"sugar uptake"}
{"gene.name":"cysP","gene.annotation":"thiosulfate binding protein","operon.name":"cysPTWAM","operon.comments":"thiosulfate transport"}
{"gene.name":"cysU","gene.annotation":"(cysT) sulfate permease T protein","operon.name":"cysPTWAM","operon.comments":"thiosulfate transport"}
{"gene.name":"cysW","gene.annotation":"sulfate permease W protein","operon.name":"cysPTWAM","operon.comments":"thiosulfate transport"}
{"gene.name":"cysA","gene.annotation":"sulfate permease A protein; chromate resistance","operon.name":"cysPTWAM","operon.comments":"thiosulfate transport"}
{"gene.name":"cysM","gene.annotation":"O-acetylserine sulfhydrolase B (EC 4.2.99.8)","operon.name":"cysPTWAM","operon.comments":"thiosulfate transport"}
{"gene.name":"amiA","gene.annotation":"probable n-acetylmuramoyl-l-alanine amidase","operon.name":"amiAhemF","operon.comments":"coproporphyrinogen oxidase"}
{"gene.name":"hemF","gene.annotation":"coproporphyrinogen oxidase","operon.name":"amiAhemF","operon.comments":"coproporphyrinogen oxidase"}
{"gene.name":"dapA","gene.annotation":"dihydrodipicolinate synthase (EC 4.2.1.52)","operon.name":"dapAnlp","operon.comments":"lysine biosynthesis"}
{"gene.name":"nlpB","gene.annotation":"lipoprotein-34","operon.name":"dapAnlp","operon.comments":"lysine biosynthesis"}
{"gene.name":"upp","gene.annotation":"uracil phosphoribosyltransferase","operon.name":"upp-uraA","operon.comments":"utilization of uracil"}
{"gene.name":"uraA","gene.annotation":"uracil permease","operon.name":"upp-uraA","operon.comments":"utilization of uracil"}
{"gene.name":"purM","gene.annotation":"phosphoribosylformylglycinamidine cyclo-ligase","operon.name":"purMN","operon.comments":"de novo purine biosynthesis"}
{"gene.name":"purN","gene.annotation":"phosphoribosylglycinamidine formyltransferase","operon.name":"purMN","operon.comments":"de novo purine biosynthesis"}
{"gene.name":"ppk","gene.annotation":"polyphosphate kinase","operon.name":"ppx","operon.comments":"degradation of inorganic polyphosphates"}
{"gene.name":"ppx","gene.annotation":"exopolyphosphatase","operon.name":"ppx","operon.comments":"degradation of inorganic polyphosphates"}
{"gene.name":"guaB","gene.annotation":"IMP dehydrogenase","operon.name":"guaBA","operon.comments":"purine catabolite"}
{"gene.name":"guaA","gene.annotation":"GMP synthetase","operon.name":"guaBA","operon.comments":"purine catabolite"}
{"gene.name":"Regulation","gene.annotation":"PDX box","operon.name":"pdxJ","operon.comments":"pyridoxal 5'-phosphate biosynthesis"}
{"gene.name":"pdxJ","gene.annotation":"pyridoxal phosphate biosynthesis","operon.name":"pdxJ","operon.comments":"pyridoxal 5'-phosphate biosynthesis"}
{"gene.name":"acpS","gene.annotation":"holo-[acyl-carrier protein] synthase (EC 2.7.8.7)","operon.name":"pdxJ","operon.comments":"pyridoxal 5'-phosphate biosynthesis"}
{"gene.name":"rnc","gene.annotation":"RNase III","operon.name":"rnc","operon.comments":"DNA/RNA processing"}
{"gene.name":"era","gene.annotation":"GTP-binding protein era","operon.name":"rnc","operon.comments":"DNA/RNA processing"}
{"gene.name":"recO","gene.annotation":"conjugational recombination and DNA repair","operon.name":"rnc","operon.comments":"DNA/RNA processing"}
{"gene.name":"lepA","gene.annotation":"GTP binding protein","operon.name":"lepAB","operon.comments":"secretory machinery"}
{"gene.name":"lepB","gene.annotation":"signal peptidase I","operon.name":"lepAB","operon.comments":"secretory machinery"}
{"gene.name":"aroF","gene.annotation":"DHAP synthetase","operon.name":"tyr","operon.comments":"biosynthesis of aromatic amino acids"}
{"gene.name":"tyrA","gene.annotation":"chorismate mutase/prephenate dehydratase","operon.name":"tyr","operon.comments":"biosynthesis of aromatic amino acids"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"tyr","operon.comments":"biosynthesis of aromatic amino acids"}
{"gene.name":"rpsP","gene.annotation":"ribosomal protein S16","operon.name":"trmD","operon.comments":"ribosomal protein"}
{"gene.name":"yfjA","gene.annotation":"","operon.name":"trmD","operon.comments":"ribosomal protein"}
{"gene.name":"trmD","gene.annotation":"tRNA (m1G) methyltransferae","operon.name":"trmD","operon.comments":"ribosomal protein"}
{"gene.name":"rplS","gene.annotation":"ribosomal protein L19","operon.name":"trmD","operon.comments":"ribosomal protein"}
{"gene.name":"nrdE","gene.annotation":"ribonucleoside-diphosphate reductase 2 alpha chain","operon.name":"nrdEF","operon.comments":"one of two class I ribonucleotide reductases"}
{"gene.name":"nrdF","gene.annotation":"ribonucleoside-diphosphate reductase 2 beta chain","operon.name":"nrdEF","operon.comments":"one of two class I ribonucleotide reductases"}
{"gene.name":"proV","gene.annotation":"high-affinity transport system for glycine betaine and proline;glycine betaine-binding protein","operon.name":"proVWX","operon.comments":"proline transport"}
{"gene.name":"proW","gene.annotation":"high-affinity transport system for glycine betaine and proline","operon.name":"proVWX","operon.comments":"proline transport"}
{"gene.name":"proX","gene.annotation":"periplasmic glycine betaine-binding protein","operon.name":"proVWX","operon.comments":"proline transport"}
{"gene.name":"srlA_1","gene.annotation":"(gutA) D-glucose (sorbitol)-specific enzyme II of phosphotransferase system","operon.name":"srlABD","operon.comments":"glucitol uptake PTS"}
{"gene.name":"srlA_2","gene.annotation":"","operon.name":"srlABD","operon.comments":"glucitol uptake PTS"}
{"gene.name":"srlB","gene.annotation":"(gutB) D-glucose (sorbitol)-specific enzyme III of phosphotransferase system","operon.name":"srlABD","operon.comments":"glucitol uptake PTS"}
{"gene.name":"srlD","gene.annotation":"(gutD) glucitol (sorbitol)-6-phosphate dehydrogenase (EC 1.1.1.140)","operon.name":"srlABD","operon.comments":"glucitol uptake PTS"}
{"gene.name":"gutM","gene.annotation":"activator","operon.name":"srlABD","operon.comments":"glucitol uptake PTS"}
{"gene.name":"srlR","gene.annotation":"(gutR) repressor","operon.name":"srlABD","operon.comments":"glucitol uptake PTS"}
{"gene.name":"gutQ","gene.annotation":"","operon.name":"srlABD","operon.comments":"glucitol uptake PTS"}
{"gene.name":"ascF","gene.annotation":"phosphotransferase enzyme II (asc) cryptic, transports specific beta-glucosides (EC 2.7.1.69)","operon.name":"ascFB","operon.comments":"cryptic sugar transport"}
{"gene.name":"ascB","gene.annotation":"6-phospho-beta-glucosidase (EC 3.2.1.86); cryptic","operon.name":"ascFB","operon.comments":"cryptic sugar transport"}
{"gene.name":"hycA","gene.annotation":"transcriptional repression of hyc and hyp operons","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hycB","gene.annotation":"probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogen-lyase [FHL] complex) (EC 1.18.99.1)","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hycC","gene.annotation":"membrane-spanning protein of hydrogenase 3 (part of FHL complex) (EC 1.18.99.1)","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hycD","gene.annotation":"membrane-spanning protein of hydrogenase 3 (part of FHL complex) (EC 1.18.99.1)","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hycE","gene.annotation":"probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) (EC 1.18.99.1)","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hycF","gene.annotation":"probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) (EC 1.18.99.1)","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hycG","gene.annotation":"hydrogenase activity","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hycH","gene.annotation":"processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex)","operon.name":"hyc","operon.comments":"hydrogenase-3"}
{"gene.name":"hypA","gene.annotation":"pleiotrophic effects on three hydrogenase isozymes","operon.name":"hypABCDE","operon.comments":"hydrogenase"}
{"gene.name":"hypB","gene.annotation":"pleiotrophic effects on three hydrogenase isozymes","operon.name":"hypABCDE","operon.comments":"hydrogenase"}
{"gene.name":"hypC","gene.annotation":"pleiotrophic effects on three hydrogenase isozymes","operon.name":"hypABCDE","operon.comments":"hydrogenase"}
{"gene.name":"hypD","gene.annotation":"pleiotrophic effects on three hydrogenase isozymes","operon.name":"hypABCDE","operon.comments":"hydrogenase"}
{"gene.name":"hypE","gene.annotation":"","operon.name":"hypABCDE","operon.comments":"hydrogenase"}
{"gene.name":"cysD","gene.annotation":"ATP:sulfate adenyltransferase (EC 2.7.7.4), subunit","operon.name":"cysDNC","operon.comments":"cysteine biosynthetic pathway"}
{"gene.name":"cysN","gene.annotation":"ATP-sulfurylase (ATP:sulfate adenylyltransferase) (EC 2.7.7.4),subunit","operon.name":"cysDNC","operon.comments":"cysteine biosynthetic pathway"}
{"gene.name":"cysC","gene.annotation":"adenosine 5'-phosphosulfate kinase (EC 2.7.1.25)","operon.name":"cysDNC","operon.comments":"cysteine biosynthetic pathway"}
{"gene.name":"cysJ","gene.annotation":"sulfite reductase (NADPH) flavoprotein beta subunit","operon.name":"cysJIH","operon.comments":"cysteine biosynthesis"}
{"gene.name":"cysI","gene.annotation":"sulfite reductase (NADPH) hemoprotein alpha subunit","operon.name":"cysJIH","operon.comments":"cysteine biosynthesis"}
{"gene.name":"cysH","gene.annotation":"3'-phosphoadenosine 5'-phosphosulfate sulfotransferase","operon.name":"cysJIH","operon.comments":"cysteine biosynthesis"}
{"gene.name":"relA","gene.annotation":"ATP:GTP 3'-pyrophosphotransferase","operon.name":"relA","operon.comments":"the stringent response to amino acid starvation"}
{"gene.name":"chpR","gene.annotation":"(mazE) homologous to plasmid R100 pemI gene","operon.name":"relA","operon.comments":"the stringent response to amino acid starvation"}
{"gene.name":"chpA","gene.annotation":"(mazF) homologous to plasmid R100 pemK gene","operon.name":"relA","operon.comments":"the stringent response to amino acid starvation"}
{"gene.name":"mazG","gene.annotation":"homologous to a /Streptomyces cacaoi/ beta-lactamase","operon.name":"relA","operon.comments":"the stringent response to amino acid starvation"}
{"gene.name":"sdaC","gene.annotation":"putative serine transporter","operon.name":"sdaCB","operon.comments":"serine uptake"}
{"gene.name":"sdaB","gene.annotation":"L-serine deaminase","operon.name":"sdaCB","operon.comments":"serine uptake"}
{"gene.name":"fucA","gene.annotation":"L-fuculose-1-phosphate aldolase (EC 4.1.2.17)","operon.name":"fucAO","operon.comments":"fucose metabolism"}
{"gene.name":"fucO","gene.annotation":"L-1,2-propanediol oxidoreductase (EC 1.1.1.77)","operon.name":"fucAO","operon.comments":"fucose metabolism"}
{"gene.name":"fucP","gene.annotation":"fucose permease; maybe symport","operon.name":"fucPIK","operon.comments":"fucose uptake metabolism"}
{"gene.name":"fucI","gene.annotation":"L-fucose isomerase (EC 5.3.1.-)","operon.name":"fucPIK","operon.comments":"fucose uptake metabolism"}
{"gene.name":"fucK","gene.annotation":"L-fuculokinase (EC 2.7.1.51)","operon.name":"fucPIK","operon.comments":"fucose uptake metabolism"}
{"gene.name":"fucU","gene.annotation":"","operon.name":"fucPIK","operon.comments":"fucose uptake metabolism"}
{"gene.name":"fucR","gene.annotation":"positive regulator of the fuc operon","operon.name":"fucPIK","operon.comments":"fucose uptake metabolism"}
{"gene.name":"ptr","gene.annotation":"protease III precursor","operon.name":"ptr-recBD","operon.comments":"endopeptidase and exonuclease"}
{"gene.name":"recB","gene.annotation":"exonuclease V subunit","operon.name":"ptr-recBD","operon.comments":"endopeptidase and exonuclease"}
{"gene.name":"recD","gene.annotation":"exonuclease V alpha-subunit","operon.name":"ptr-recBD","operon.comments":"endopeptidase and exonuclease"}
{"gene.name":"prfB","gene.annotation":"peptide chain release factor 2","operon.name":"prfBlysS","operon.comments":"peptide chain release factor"}
{"gene.name":"lysS","gene.annotation":"(herC) lysyl-tRNA synthetase (EC 6.1.1.6)","operon.name":"prfBlysS","operon.comments":"peptide chain release factor"}
{"gene.name":"gcvT","gene.annotation":"aminomethyltransferase","operon.name":"gcv","operon.comments":"glycine cleavage system"}
{"gene.name":"gcvH","gene.annotation":"shuttles the methylamine group of glycine from the P protein to the T protein","operon.name":"gcv","operon.comments":"glycine cleavage system"}
{"gene.name":"gcvP","gene.annotation":"glycine dehydrogenase","operon.name":"gcv","operon.comments":"glycine cleavage system"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"gcv","operon.comments":"glycine cleavage system"}
{"gene.name":"Comment","gene.annotation":"leucine-responsive genes","operon.name":"serA","operon.comments":"L-serine biosynthesis"}
{"gene.name":"rpiA","gene.annotation":"ribose-5-phosphate isomerase","operon.name":"serA","operon.comments":"L-serine biosynthesis"}
{"gene.name":"serA","gene.annotation":"D-3-phosphoglycerate dehydrogenase","operon.name":"serA","operon.comments":"L-serine biosynthesis"}
{"gene.name":"glcD","gene.annotation":"glycolate oxidase","operon.name":"glc","operon.comments":"glycolate utilization"}
{"gene.name":"2912","gene.annotation":"(glcE) glycolate oxidase subunit","operon.name":"glc","operon.comments":"glycolate utilization"}
{"gene.name":"glcG","gene.annotation":"","operon.name":"glc","operon.comments":"glycolate utilization"}
{"gene.name":"glcB","gene.annotation":"","operon.name":"glc","operon.comments":"glycolate utilization"}
{"gene.name":"hybA","gene.annotation":"putative hydrogenase-2 small subunit","operon.name":"hyb","operon.comments":"hydrogenase-2"}
{"gene.name":"hybB","gene.annotation":"probable Ni/Fe-hydrogenase 2 b-type cytochrome subunit","operon.name":"hyb","operon.comments":"hydrogenase-2"}
{"gene.name":"hybC","gene.annotation":"hydrogenase-2 large subunit","operon.name":"hyb","operon.comments":"hydrogenase-2"}
{"gene.name":"hybD","gene.annotation":"HybD protein","operon.name":"hyb","operon.comments":"hydrogenase-2"}
{"gene.name":"hybE","gene.annotation":"HybE protein","operon.name":"hyb","operon.comments":"hydrogenase-2"}
{"gene.name":"hybF","gene.annotation":"HybF protein","operon.name":"hyb","operon.comments":"hydrogenase-2"}
{"gene.name":"hybG","gene.annotation":"HybG protein","operon.name":"hyb","operon.comments":"hydrogenase-2"}
{"gene.name":"ttdA","gene.annotation":"tartrate dehydratse","operon.name":"ttdAB","operon.comments":"an oxygen-labile stereospecific L-tartrate dehydratase"}
{"gene.name":"ttdB","gene.annotation":"tartrate dehydratse","operon.name":"ttdAB","operon.comments":"an oxygen-labile stereospecific L-tartrate dehydratase"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"rpsU-dnaG-rpoD","operon.comments":"ribosomal protein"}
{"gene.name":"Regulation","gene.annotation":"LexA binding site","operon.name":"rpsU-dnaG-rpoD","operon.comments":"ribosomal protein"}
{"gene.name":"rpsU","gene.annotation":"ribosomal protein S21","operon.name":"rpsU-dnaG-rpoD","operon.comments":"ribosomal protein"}
{"gene.name":"dnaG","gene.annotation":"DNA primase","operon.name":"rpsU-dnaG-rpoD","operon.comments":"ribosomal protein"}
{"gene.name":"rpoD","gene.annotation":"RNA polymerase sigma-subunit","operon.name":"rpsU-dnaG-rpoD","operon.comments":"ribosomal protein"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"rpsU-dnaG-rpoD","operon.comments":"ribosomal protein"}
{"gene.name":"ebgA","gene.annotation":"beta-D-galactosidase, alpha subunit; cryptic gene (EC 3.2.1.23); very poor lactase","operon.name":"ebgAC","operon.comments":"beta galactoside utilization"}
{"gene.name":"ebgC","gene.annotation":"beta-D-galactosidase, beta subunit; cryptic gene (EC 3.2.1.23)","operon.name":"ebgAC","operon.comments":"beta galactoside utilization"}
{"gene.name":"ygjI","gene.annotation":"(ebgB) possible homolog of lacY","operon.name":"ebgAC","operon.comments":"beta galactoside utilization"}
{"gene.name":"uxaC","gene.annotation":"uronate isomerase (EC 5.3.1.12)","operon.name":"uxaCA","operon.comments":"pentose and glucuronate interconversion"}
{"gene.name":"uxaA","gene.annotation":"altronate hydrolase (EC 4.2.1.7)","operon.name":"uxaCA","operon.comments":"pentose and glucuronate interconversion"}
{"gene.name":"tdcA","gene.annotation":"tdcABC operon transcriptional activator","operon.name":"tdc","operon.comments":"threonine dehydratase"}
{"gene.name":"tdcB","gene.annotation":"catabolic threonine dehydratase","operon.name":"tdc","operon.comments":"threonine dehydratase"}
{"gene.name":"tdcC","gene.annotation":"threonine-serine permease","operon.name":"tdc","operon.comments":"threonine dehydratase"}
{"gene.name":"agaZ","gene.annotation":"putative tagatose 6-phosphate kinase (EC 2.7.1.-)","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaV","gene.annotation":"N-acetylgalactosamine-specific IIB component 2","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaW","gene.annotation":"N-acetylgalactosamine-specific IIC component 2","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaA","gene.annotation":"putative N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.-)","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaS","gene.annotation":"may be a tagatose-6-phsophate ketose/aldose isomerase","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaY","gene.annotation":"tagatose-bisphosphate aldolase","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaB","gene.annotation":"N-acetylgalactosamine-specific IIB component 1","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaC","gene.annotation":"N-acetylgalactosamine-specific IIC component 1","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaD","gene.annotation":"N-acetylgalactosamine-specific IID component","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"agaI","gene.annotation":"putative galactosamine-6-phosphate isomerase (EC 5.3.1.-)","operon.name":"aga","operon.comments":"N-acetylgalactosamine uptake"}
{"gene.name":"rpsO","gene.annotation":"ribosomal protein S15","operon.name":"rpsO-pnp","operon.comments":"ribosomal protein"}
{"gene.name":"pnp","gene.annotation":"polynucleotide phosphorilase","operon.name":"rpsO-pnp","operon.comments":"ribosomal protein"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"rpsO-pnp","operon.comments":"ribosomal protein"}
{"gene.name":"rbfA","gene.annotation":"ribosome-binding factor A; P15B","operon.name":"rbfAtruB","operon.comments":"RNA modification"}
{"gene.name":"truB","gene.annotation":"tRNA pseudouridine 55 synthase; P35","operon.name":"rbfAtruB","operon.comments":"RNA modification"}
{"gene.name":"yhbC","gene.annotation":"hypothetical 16.8 kD protein","operon.name":"nusA","operon.comments":"transcription & translation"}
{"gene.name":"nusA","gene.annotation":"NusA protein","operon.name":"nusA","operon.comments":"transcription & translation"}
{"gene.name":"infB","gene.annotation":"initiation factor IF2-alpha (infB)","operon.name":"nusA","operon.comments":"transcription & translation"}
{"gene.name":"rplU","gene.annotation":"ribosomal protein L21","operon.name":"rplUrpmA","operon.comments":"ribosomal protein"}
{"gene.name":"rpmA","gene.annotation":"ribosomal protein L27","operon.name":"rplUrpmA","operon.comments":"ribosomal protein"}
{"gene.name":"yhbN","gene.annotation":"17.3 kD protein","operon.name":"rpoN","operon.comments":"organic nitrogen uptake and assimilation"}
{"gene.name":"yhbG","gene.annotation":"probable ABC transporter in ntrA/rpoN 5'region","operon.name":"rpoN","operon.comments":"organic nitrogen uptake and assimilation"}
{"gene.name":"rpoN","gene.annotation":"sigma-N (sigma-54)","operon.name":"rpoN","operon.comments":"organic nitrogen uptake and assimilation"}
{"gene.name":"yhbH","gene.annotation":"probable sigma-54 modulation protein","operon.name":"rpoN","operon.comments":"organic nitrogen uptake and assimilation"}
{"gene.name":"ptsN","gene.annotation":"enzyme IIA-Ntr; affects growth on organic nitrogen","operon.name":"rpoN","operon.comments":"organic nitrogen uptake and assimilation"}
{"gene.name":"3135","gene.annotation":"o284","operon.name":"rpoN","operon.comments":"organic nitrogen uptake and assimilation"}
{"gene.name":"ptsO","gene.annotation":"(npr) NPr","operon.name":"rpoN","operon.comments":"organic nitrogen uptake and assimilation"}
{"gene.name":"gltB","gene.annotation":"glutamate synthase, large subunit (EC 1.4.1.13)","operon.name":"gltBDF","operon.comments":"induction of the Ntr enzymes"}
{"gene.name":"gltD","gene.annotation":"glutamate synthase, small subunit (EC 1.4.1.13)","operon.name":"gltBDF","operon.comments":"induction of the Ntr enzymes"}
{"gene.name":"gltF","gene.annotation":"gltF protein","operon.name":"gltBDF","operon.comments":"induction of the Ntr enzymes"}
{"gene.name":"sspA","gene.annotation":"stringent starvation protein A","operon.name":"sspAB","operon.comments":"stringent starvation"}
{"gene.name":"sspB","gene.annotation":"stringent starvation protein B","operon.name":"sspAB","operon.comments":"stringent starvation"}
{"gene.name":"rplM","gene.annotation":"50S ribosomal protein L13","operon.name":"rplMrpsI","operon.comments":"ribosomal protein"}
{"gene.name":"rpsI","gene.annotation":"30S ribosomal protein S9","operon.name":"rplMrpsI","operon.comments":"ribosomal protein"}
{"gene.name":"accB","gene.annotation":"(fabE) biotin carboxyl carrier protein","operon.name":"accBC","operon.comments":"acetylCoA carboxylase"}
{"gene.name":"accC","gene.annotation":"(fabG) biotin carboxylase","operon.name":"accBC","operon.comments":"acetylCoA carboxylase"}
{"gene.name":"panF","gene.annotation":"pantothenate permease","operon.name":"prmA","operon.comments":"ribosomal protein"}
{"gene.name":"prmA","gene.annotation":"ribosomal protein L11 methyltransferase","operon.name":"prmA","operon.comments":"ribosomal protein"}
{"gene.name":"yhdG","gene.annotation":"hypothetical 35.9 kD protein","operon.name":"fis","operon.comments":"DNA inversion"}
{"gene.name":"fis","gene.annotation":"binding to a recombinational enhancer sequence that is required to stimulate hin-mediated dna inversion","operon.name":"fis","operon.comments":"DNA inversion"}
{"gene.name":"yhdJ","gene.annotation":"hypothetical adenine-specific methylase","operon.name":"fis","operon.comments":"DNA inversion"}
{"gene.name":"acrE","gene.annotation":"acriflavine resistance protein","operon.name":"acrEF","operon.comments":"(envCD) acriflavine resistance"}
{"gene.name":"acrF","gene.annotation":"acriflavine resistance protein","operon.name":"acrEF","operon.comments":"(envCD) acriflavine resistance"}
{"gene.name":"def","gene.annotation":"N-formylmethionylaminoacyl-tRNA deformylase","operon.name":"def-fmt","operon.comments":"tRNA modification"}
{"gene.name":"fmt","gene.annotation":"methionyl-tRNA formyltransferase","operon.name":"def-fmt","operon.comments":"tRNA modification"}
{"gene.name":"fmu","gene.annotation":"Sun protein (Fmu protein); nucleolar protein family","operon.name":"def-fmt","operon.comments":"tRNA modification"}
{"gene.name":"rpsM","gene.annotation":"30S ribosomal protein S13","operon.name":"alpha","operon.comments":"ribosomal protein"}
{"gene.name":"rpsK","gene.annotation":"30S ribosomal protein Sll","operon.name":"alpha","operon.comments":"ribosomal protein"}
{"gene.name":"rpsD","gene.annotation":"30S ribosomal protein S4","operon.name":"alpha","operon.comments":"ribosomal protein"}
{"gene.name":"rpoA","gene.annotation":"RNA polymerase (EC 2.7.7.6), alpha subunit","operon.name":"alpha","operon.comments":"ribosomal protein"}
{"gene.name":"rplQ","gene.annotation":"50S ribosomal protein L17","operon.name":"alpha","operon.comments":"ribosomal protein"}
{"gene.name":"rplN","gene.annotation":"50S ribosomal protein L14","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rplX","gene.annotation":"50S ribosomal protein L24","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rplE","gene.annotation":"50S ribosomal protein L5","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rpsN","gene.annotation":"30S ribosomal protein S14","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rpsH","gene.annotation":"30S ribosomal protein S8","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rplF","gene.annotation":"50S ribosomal protein L6","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rplR","gene.annotation":"50S ribosomal protein L18","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rpsE","gene.annotation":"30S ribosomal protein S5","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rpmD","gene.annotation":"50S ribosomal protein L30","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rplO","gene.annotation":"50S ribosomal protein L15","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"prlA","gene.annotation":"(secY) membrane protein, protein secretion (with secL)","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rpmJ","gene.annotation":"50S ribosomal protein X","operon.name":"spc","operon.comments":"ribosomal protein"}
{"gene.name":"rpsJ","gene.annotation":"30S ribosomal protein S10","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rplC","gene.annotation":"50S ribosomal protein L3","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rplD","gene.annotation":"50S ribosomal protein L4","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rplW","gene.annotation":"50S ribosomal protein L23","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rplB","gene.annotation":"50S ribosomal protein L2","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rpsS","gene.annotation":"50S ribosomal protein S19","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rplV","gene.annotation":"50S ribosomal protein L22","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rpsC","gene.annotation":"30S ribosomal protein S3","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rplP","gene.annotation":"50S ribosomal protein L16","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rpmC","gene.annotation":"50S ribosomal protein L29","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rpsQ","gene.annotation":"30S ribosomal protein S17","operon.name":"S10","operon.comments":"ribosomal protein"}
{"gene.name":"rpsL","gene.annotation":"30S ribosomal protein S12","operon.name":"str","operon.comments":"ribosomal protein"}
{"gene.name":"rpsG","gene.annotation":"30S ribosomal protein S7","operon.name":"str","operon.comments":"ribosomal protein"}
{"gene.name":"fusA","gene.annotation":"protein chain elongation factor EF-G","operon.name":"str","operon.comments":"ribosomal protein"}
{"gene.name":"tufA","gene.annotation":"protein chain elongation factor EF-Tu","operon.name":"str","operon.comments":"ribosomal protein"}
{"gene.name":"Regulation","gene.annotation":"poor promoter","operon.name":"fic-pabA","operon.comments":"para-aminobenzoate synthetase"}
{"gene.name":"yhfG","gene.annotation":"hypothetical 6.6 kD protein","operon.name":"fic-pabA","operon.comments":"para-aminobenzoate synthetase"}
{"gene.name":"fic","gene.annotation":"cell filamentation protein fic","operon.name":"fic-pabA","operon.comments":"para-aminobenzoate synthetase"}
{"gene.name":"pabA","gene.annotation":"para-aminobenzoate synthetase; CoII","operon.name":"fic-pabA","operon.comments":"para-aminobenzoate synthetase"}
{"gene.name":"nirB","gene.annotation":"NADH-nitrate oxidoreductase apoprotein","operon.name":"nirBDC","operon.comments":"NADH-dependent nitrite reductase"}
{"gene.name":"nirD","gene.annotation":"nitrite reductase (NAD(P)H) small subunit","operon.name":"nirBDC","operon.comments":"NADH-dependent nitrite reductase"}
{"gene.name":"nirC","gene.annotation":"potential nitrite transporter","operon.name":"nirBDC","operon.comments":"NADH-dependent nitrite reductase"}
{"gene.name":"aroK","gene.annotation":"shikimic acid kinase I","operon.name":"dam","operon.comments":"dam superoperon; cell cycle regulation, aromatic amino acid biosynthesis and carbohydrate metabolism"}
{"gene.name":"aroB","gene.annotation":"3-dehydroquinate synthase","operon.name":"dam","operon.comments":"dam superoperon; cell cycle regulation, aromatic amino acid biosynthesis and carbohydrate metabolism"}
{"gene.name":"damX","gene.annotation":"","operon.name":"dam","operon.comments":"dam superoperon; cell cycle regulation, aromatic amino acid biosynthesis and carbohydrate metabolism"}
{"gene.name":"dam","gene.annotation":"adenine methylase","operon.name":"dam","operon.comments":"dam superoperon; cell cycle regulation, aromatic amino acid biosynthesis and carbohydrate metabolism"}
{"gene.name":"rpe","gene.annotation":"24k; d-ribulose-5-phosphate epimerase","operon.name":"dam","operon.comments":"dam superoperon; cell cycle regulation, aromatic amino acid biosynthesis and carbohydrate metabolism"}
{"gene.name":"gph","gene.annotation":"27k; 2-phosphoglycolate phosphatase","operon.name":"dam","operon.comments":"dam superoperon; cell cycle regulation, aromatic amino acid biosynthesis and carbohydrate metabolism"}
{"gene.name":"trpS","gene.annotation":"tryptophanyl-tRNA synthetase","operon.name":"dam","operon.comments":"dam superoperon; cell cycle regulation, aromatic amino acid biosynthesis and carbohydrate metabolism"}
{"gene.name":"ompR","gene.annotation":"OmpR protein; regulator","operon.name":"ompB","operon.comments":"two-component system"}
{"gene.name":"envZ","gene.annotation":"EnvZ protein; sensor","operon.name":"ompB","operon.comments":"two-component system"}
{"gene.name":"feoA","gene.annotation":"ferrous iron transport protein a","operon.name":"feoAB","operon.comments":"ferrous iron transpor"}
{"gene.name":"feoB","gene.annotation":"ferrous iron transport protein b","operon.name":"feoAB","operon.comments":"ferrous iron transpor"}
{"gene.name":"malP","gene.annotation":"maltodextrin phosphorylase","operon.name":"malPQ","operon.comments":"Glycogen Debranching Enzyme System"}
{"gene.name":"malQ","gene.annotation":"4-alpha-glucanotransferase","operon.name":"malPQ","operon.comments":"Glycogen Debranching Enzyme System"}
{"gene.name":"glgB","gene.annotation":"1,4-alpha-glucan branching enzyme","operon.name":"glgBXCAP","operon.comments":"glycogen synthesis"}
{"gene.name":"glgX","gene.annotation":"glycogen operon protein GlgX","operon.name":"glgBXCAP","operon.comments":"glycogen synthesis"}
{"gene.name":"glgC","gene.annotation":"glucose-1-phosphate adenylyltransferase","operon.name":"glgBXCAP","operon.comments":"glycogen synthesis"}
{"gene.name":"glgA","gene.annotation":"glycogen synthase","operon.name":"glgBXCAP","operon.comments":"glycogen synthesis"}
{"gene.name":"glgP","gene.annotation":"alpha-glucan phosphorylase","operon.name":"glgBXCAP","operon.comments":"glycogen synthesis"}
{"gene.name":"gntK","gene.annotation":"thermoresistant gluconokinase (EC 2.7.1.12)","operon.name":"gntKU","operon.comments":"gluconate uptake and catabolism"}
{"gene.name":"gntU_1","gene.annotation":"low-affinity gluconate transporter (gluconate permease)","operon.name":"gntKU","operon.comments":"gluconate uptake and catabolism"}
{"gene.name":"gntU_2","gene.annotation":"","operon.name":"gntKU","operon.comments":"gluconate uptake and catabolism"}
{"gene.name":"ugpB","gene.annotation":"sn-glycerol 3-phosphate transport system; periplasmic binding protein","operon.name":"ugpBAECQ","operon.comments":"sn-glycerol 3-phosphate transport system"}
{"gene.name":"ugpA","gene.annotation":"sn-glycerol 3-phosphate transport system","operon.name":"ugpBAECQ","operon.comments":"sn-glycerol 3-phosphate transport system"}
{"gene.name":"ugpE","gene.annotation":"sn-glycerol 3-phosphate transport system membrane protein","operon.name":"ugpBAECQ","operon.comments":"sn-glycerol 3-phosphate transport system"}
{"gene.name":"ugpC","gene.annotation":"sn-glycerol 3-phosphate transport system","operon.name":"ugpBAECQ","operon.comments":"sn-glycerol 3-phosphate transport system"}
{"gene.name":"ugpQ","gene.annotation":"glycerophosphodiester phosphodiesterase, cytosolic (EC 3,1,4,46)","operon.name":"ugpBAECQ","operon.comments":"sn-glycerol 3-phosphate transport system"}
{"gene.name":"livK","gene.annotation":"leucine-specific binding protein precursor","operon.name":"livKHMGF","operon.comments":"high affinity, branched-chain amino acid transport system"}
{"gene.name":"livH","gene.annotation":"high-affinity branched-chain amino acid transport permease","operon.name":"livKHMGF","operon.comments":"high affinity, branched-chain amino acid transport system"}
{"gene.name":"livM","gene.annotation":"high-affinity branched-chain amino acid transport permease","operon.name":"livKHMGF","operon.comments":"high affinity, branched-chain amino acid transport system"}
{"gene.name":"livG","gene.annotation":"high-affinity branched-chain amino acid transport ATP-binding protein","operon.name":"livKHMGF","operon.comments":"high affinity, branched-chain amino acid transport system"}
{"gene.name":"livF","gene.annotation":"high-affinity branched-chain amino acid transport ATP-binding protein","operon.name":"livKHMGF","operon.comments":"high affinity, branched-chain amino acid transport system"}
{"gene.name":"ftsY","gene.annotation":"cell division protein","operon.name":"ftsYEX","operon.comments":"cell division"}
{"gene.name":"ftsE","gene.annotation":"cell division protein","operon.name":"ftsYEX","operon.comments":"cell division"}
{"gene.name":"ftsX","gene.annotation":"cell division protein","operon.name":"ftsYEX","operon.comments":"cell division"}
{"gene.name":"nikA","gene.annotation":"transport of Ni essential for hydrogenases; nickel-binding protein","operon.name":"nikABCDE","operon.comments":"nickel transport"}
{"gene.name":"nikB","gene.annotation":"nickel transport system permease protein NikB","operon.name":"nikABCDE","operon.comments":"nickel transport"}
{"gene.name":"nikC","gene.annotation":"nickel transport system permease protein NikC","operon.name":"nikABCDE","operon.comments":"nickel transport"}
{"gene.name":"nikD","gene.annotation":"nickel transport ATP-binding protein NikD","operon.name":"nikABCDE","operon.comments":"nickel transport"}
{"gene.name":"nikE","gene.annotation":"nickel transport ATP-binding protein NikE","operon.name":"nikABCDE","operon.comments":"nickel transport"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"arsBC","operon.comments":"arsenical resistance"}
{"gene.name":"arsR","gene.annotation":"arsenical resistance operon arsEFG repressor","operon.name":"arsBC","operon.comments":"arsenical resistance"}
{"gene.name":"arsB","gene.annotation":"arsenical pump membrane protein","operon.name":"arsBC","operon.comments":"arsenical resistance"}
{"gene.name":"arsC","gene.annotation":"arsenate reductase (arsenical pump modifier)","operon.name":"arsBC","operon.comments":"arsenical resistance"}
{"gene.name":"dppA","gene.annotation":"dipeptide-binding protein","operon.name":"dpp","operon.comments":"dipeptide transporter"}
{"gene.name":"dppB","gene.annotation":"transmembrane protein","operon.name":"dpp","operon.comments":"dipeptide transporter"}
{"gene.name":"dppC","gene.annotation":"transmembrane protein","operon.name":"dpp","operon.comments":"dipeptide transporter"}
{"gene.name":"dppD","gene.annotation":"peripheral membrane protein","operon.name":"dpp","operon.comments":"dipeptide transporter"}
{"gene.name":"dppF","gene.annotation":"peripheral membrane protein","operon.name":"dpp","operon.comments":"dipeptide transporter"}
{"gene.name":"glyQ","gene.annotation":"glycine tRNA synthetase, alpha chain","operon.name":"glyQS","operon.comments":"glycine tRNA synthetase"}
{"gene.name":"glyS","gene.annotation":"glycine tRNA synthetase, beta chain (EC 6 1 1 14)","operon.name":"glyQS","operon.comments":"glycine tRNA synthetase"}
{"gene.name":"xylF","gene.annotation":"D-xylose-binding periplasmic protein precursor","operon.name":"xylFGH","operon.comments":"xylose transport"}
{"gene.name":"xylG","gene.annotation":"D-xylose transport ATP-binding protein XylG","operon.name":"xylFGH","operon.comments":"xylose transport"}
{"gene.name":"xylH","gene.annotation":"xylose transport permease protein XylH","operon.name":"xylFGH","operon.comments":"xylose transport"}
{"gene.name":"xylR","gene.annotation":"xylose operon regulatory protein","operon.name":"xylFGH","operon.comments":"xylose transport"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"xylFGH","operon.comments":"xylose transport"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"mtlAD","operon.comments":"mannitol uptake"}
{"gene.name":"mtlA","gene.annotation":"mannitol-specific enzyme II of the phosphotransferase system","operon.name":"mtlAD","operon.comments":"mannitol uptake"}
{"gene.name":"mtlD","gene.annotation":"mannitol-phosphate dehydrogenase","operon.name":"mtlAD","operon.comments":"mannitol uptake"}
{"gene.name":"lldP","gene.annotation":"(lctP) L-lactate permease","operon.name":"lct","operon.comments":"L-lactate dehydrogenase"}
{"gene.name":"lctR","gene.annotation":"(lldR) putative l-lactate dehydrogenase operon regulatory protein","operon.name":"lct","operon.comments":"L-lactate dehydrogenase"}
{"gene.name":"lctD","gene.annotation":"(lldD) L-lactate dehydrogenase","operon.name":"lct","operon.comments":"L-lactate dehydrogenase"}
{"gene.name":"kbl","gene.annotation":"2-amino-3-ketobutyrate CoA ligase; glycine acetyltransferase","operon.name":"tdh","operon.comments":"L-threonine metabolism"}
{"gene.name":"tdh","gene.annotation":"threonine 3-dehydrogenase","operon.name":"tdh","operon.comments":"L-threonine metabolism"}
{"gene.name":"rfaQ","gene.annotation":"lipopolysaccharide core biosynthesis","operon.name":"rfa","operon.comments":"Lipopolysaccharide core biosynthesis"}
{"gene.name":"rfaG","gene.annotation":"lipopolysaccharide core biosynthesis; glucosyltransferase 1","operon.name":"rfa","operon.comments":"Lipopolysaccharide core biosynthesis"}
{"gene.name":"rfaP","gene.annotation":"lipopolysaccharide core biosynthesis; phosphorylation of core heptose","operon.name":"rfa","operon.comments":"Lipopolysaccharide core biosynthesis"}
{"gene.name":"rfaS","gene.annotation":"","operon.name":"rfa","operon.comments":"Lipopolysaccharide core biosynthesis"}
{"gene.name":"rfaB","gene.annotation":"UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyl-transferase","operon.name":"rfa","operon.comments":"Lipopolysaccharide core biosynthesis"}
{"gene.name":"rfaI","gene.annotation":"UDP-D-galactose:(glucosyl)lipopolysaccharide-o-1,3-D-galactosyl-transferase","operon.name":"rfa","operon.comments":"Lipopolysaccharide core biosynthesis"}
{"gene.name":"rfaJ","gene.annotation":"UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase","operon.name":"rfa","operon.comments":"Lipopolysaccharide core biosynthesis"}
{"gene.name":"kdtA","gene.annotation":"KDO transferase","operon.name":"kdtAB","operon.comments":"lipopolysaccharid biosynthesis"}
{"gene.name":"kdtB","gene.annotation":"lipopolysaccharide core biosynthesis protein kdtB","operon.name":"kdtAB","operon.comments":"lipopolysaccharid biosynthesis"}
{"gene.name":"dfp","gene.annotation":"flavoprotein affecting synthesis of DNA and pantothenate metabolism","operon.name":"dfp-dut","operon.comments":"DNA & pantothenate metabolism"}
{"gene.name":"dut","gene.annotation":"deoxyuridine 5'-triphosphate nucleotidohydrolase","operon.name":"dfp-dut","operon.comments":"DNA & pantothenate metabolism"}
{"gene.name":"ttk","gene.annotation":"23 kD protein","operon.name":"dfp-dut","operon.comments":"DNA & pantothenate metabolism"}
{"gene.name":"rph","gene.annotation":"ribonuclease PH (EC 2.7.7.56); removes nuc following the -CCA terminus of tRNA and adds nuc to the ends of RNA by using nucleoside diphosphates as substrate","operon.name":"rph-pyrE","operon.comments":"ribonuclease & pyrimidine biosynthesis"}
{"gene.name":"pyrE","gene.annotation":"orotate phosphoribosyltransferase","operon.name":"rph-pyrE","operon.comments":"ribonuclease & pyrimidine biosynthesis"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"rph-pyrE","operon.comments":"ribonuclease & pyrimidine biosynthesis"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"spoT","operon.comments":"DNA/RNA processing"}
{"gene.name":"gmk","gene.annotation":"GMP kinase","operon.name":"spoT","operon.comments":"DNA/RNA processing"}
{"gene.name":"rpoZ","gene.annotation":"DNA-directed RNA polymerase omega protein","operon.name":"spoT","operon.comments":"DNA/RNA processing"}
{"gene.name":"spoT","gene.annotation":"(p)ppGpp 3'-pyrophosphohydrolase","operon.name":"spoT","operon.comments":"DNA/RNA processing"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"spoT","operon.comments":"DNA/RNA processing"}
{"gene.name":"spoU","gene.annotation":"putative rRNA methylases","operon.name":"spoT","operon.comments":"DNA/RNA processing"}
{"gene.name":"recG","gene.annotation":"DNA recombinase","operon.name":"spoT","operon.comments":"DNA/RNA processing"}
{"gene.name":"uhpA","gene.annotation":"response regulator positive activator of uhpT transcription","operon.name":"uhp","operon.comments":"hexose phosphate transport"}
{"gene.name":"uhpB","gene.annotation":"sensor protein UhpB; membrane associated protein kinase","operon.name":"uhp","operon.comments":"hexose phosphate transport"}
{"gene.name":"uhpC","gene.annotation":"regulatory protein; may act jointly with the UhpB","operon.name":"uhp","operon.comments":"hexose phosphate transport"}
{"gene.name":"uhpT","gene.annotation":"hexose phosphate transport protein","operon.name":"uhp","operon.comments":"hexose phosphate transport"}
{"gene.name":"ilvB","gene.annotation":"acetolactate synthase I (EC 4.1.3.18), valine sensitive, large subunit","operon.name":"ilvBN","operon.comments":"acetolactate synthase I"}
{"gene.name":"ilvN","gene.annotation":"acetolactate synthase I (EC 4.1.3.18), valine sensitive, small subunit","operon.name":"ilvBN","operon.comments":"acetolactate synthase I"}
{"gene.name":"glvC","gene.annotation":"PTSIIC","operon.name":"glvCBG","operon.comments":"glucoside uptake"}
{"gene.name":"glvB","gene.annotation":"PTSIIB","operon.name":"glvCBG","operon.comments":"glucoside uptake"}
{"gene.name":"glvG","gene.annotation":"6-phospho-beta-glucosidase","operon.name":"glvCBG","operon.comments":"glucoside uptake"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"dnaA","operon.comments":"replication"}
{"gene.name":"dnaA","gene.annotation":"DnaA protein","operon.name":"dnaA","operon.comments":"replication"}
{"gene.name":"dnaN","gene.annotation":"DNA polymerase III beta-subunit","operon.name":"dnaA","operon.comments":"replication"}
{"gene.name":"recF","gene.annotation":"recF protein","operon.name":"dnaA","operon.comments":"replication"}
{"gene.name":"rpmH","gene.annotation":"ribosomal protein L34","operon.name":"rpmH","operon.comments":"ribosomal protein"}
{"gene.name":"rnpA","gene.annotation":"ribonuclease P protein component","operon.name":"rpmH","operon.comments":"ribosomal protein"}
{"gene.name":"tnaA","gene.annotation":"tryptophanase","operon.name":"tnaAB","operon.comments":"tryptophan transport"}
{"gene.name":"tnaB","gene.annotation":"low affinity tryptophan permease","operon.name":"tnaAB","operon.comments":"tryptophan transport"}
{"gene.name":"bglG","gene.annotation":"(bglC) positive regulation of bgl operon","operon.name":"bglGFB","operon.comments":"beta-glucoside transport"}
{"gene.name":"bglF","gene.annotation":"beta-glucoside transport, PEP-dependent enzymeII (EC 2.7.1.69)","operon.name":"bglGFB","operon.comments":"beta-glucoside transport"}
{"gene.name":"bglB","gene.annotation":"phospho-beta-glucosidase B (EC 3.2.1.86)","operon.name":"bglGFB","operon.comments":"beta-glucoside transport"}
{"gene.name":"glmU","gene.annotation":"UDP-N-acetylglucosamine pyrophosphorylase","operon.name":"glmUS","operon.comments":"amino sugar biosynthesis"}
{"gene.name":"glmS","gene.annotation":"glucosaminephosphate isomerase","operon.name":"glmUS","operon.comments":"amino sugar biosynthesis"}
{"gene.name":"atpI","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), subunit?","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpB","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), F0 sector, subunit a","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpE","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), F0 sector, subunit c; DCCD-binding protein","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpF","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), F0 sector, subunit b","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpH","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), Fl sector, delta subunit","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpA","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), Fl sector, alpha subunit","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpG","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), Fl sector, gamma subunit","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpD","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), Fl sector, beta subunit","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"atpC","gene.annotation":"membrane-bound ATP synthase (EC 3.6.1.34), Fl sector, epciron subunit","operon.name":"atp","operon.comments":"(unc) membrane-bound ATP synthase"}
{"gene.name":"rbsD","gene.annotation":"D-ribose high-affinity transport system; membrane-associated protein","operon.name":"rbs","operon.comments":"ribose transport"}
{"gene.name":"rbsA","gene.annotation":"D-ribose high-affinity transport system; membrane-associated protein","operon.name":"rbs","operon.comments":"ribose transport"}
{"gene.name":"rbsC","gene.annotation":"D-ribose high-affinity transport system; membrane-associated protein","operon.name":"rbs","operon.comments":"ribose transport"}
{"gene.name":"rbsB","gene.annotation":"D-ribose peroplasmic binding protein","operon.name":"rbs","operon.comments":"ribose transport"}
{"gene.name":"rbsK","gene.annotation":"ribokinase","operon.name":"rbs","operon.comments":"ribose transport"}
{"gene.name":"ilvG_1","gene.annotation":"acetolactate synthase 11 (EC 4.1.3.18), valine insensitive, large subunit, silent in K-12","operon.name":"ilvGMEDA","operon.comments":"valine and isoleucine biosynthesis"}
{"gene.name":"ilvM","gene.annotation":"acetolactate synthase 11 (EC 4.1.3.18), valine insensitive, small subunit, silent in K-12","operon.name":"ilvGMEDA","operon.comments":"valine and isoleucine biosynthesis"}
{"gene.name":"ilvE","gene.annotation":"branched-chain amino acid aminotransferase (EC 2.6.1.42)","operon.name":"ilvGMEDA","operon.comments":"valine and isoleucine biosynthesis"}
{"gene.name":"ilvD","gene.annotation":"dihydroxyacid dehydratase (EC 4.2.1.9)","operon.name":"ilvGMEDA","operon.comments":"valine and isoleucine biosynthesis"}
{"gene.name":"ilvA","gene.annotation":"threonine deaminase (EC 4.2.1.16)","operon.name":"ilvGMEDA","operon.comments":"valine and isoleucine biosynthesis"}
{"gene.name":"hemC","gene.annotation":"porphobilinogen deaminase","operon.name":"hem","operon.comments":"porphyrin biosynthesis"}
{"gene.name":"hemD","gene.annotation":"uroporphyrinogen-III cosynthetase","operon.name":"hem","operon.comments":"porphyrin biosynthesis"}
{"gene.name":"hemX","gene.annotation":"putative urogenIII methylase","operon.name":"hem","operon.comments":"porphyrin biosynthesis"}
{"gene.name":"hemY","gene.annotation":"","operon.name":"hem","operon.comments":"porphyrin biosynthesis"}
{"gene.name":"fadB","gene.annotation":"fatty oxidation complex alpha subunit","operon.name":"fadBA","operon.comments":"multifunctional enzyme complex of the fatty acid degradation cycle"}
{"gene.name":"fadA","gene.annotation":"fatty oxidation complex beta subunit","operon.name":"fadBA","operon.comments":"multifunctional enzyme complex of the fatty acid degradation cycle"}
{"gene.name":"glnA","gene.annotation":"glutamine synthetase A","operon.name":"glnALG","operon.comments":"glutamine synthetase"}
{"gene.name":"glnL","gene.annotation":"glutamine synthetase L; NR(II)","operon.name":"glnALG","operon.comments":"glutamine synthetase"}
{"gene.name":"glnG","gene.annotation":"glutamine synthetase; NR(I)","operon.name":"glnALG","operon.comments":"glutamine synthetase"}
{"gene.name":"Comment","gene.annotation":"putative","operon.name":"frv","operon.comments":"fructose-specific enzymes"}
{"gene.name":"frvA","gene.annotation":"PTS system, fructose-like-1 IIA component","operon.name":"frv","operon.comments":"fructose-specific enzymes"}
{"gene.name":"frvB","gene.annotation":"PTS system, fructose-like-1 IIBC component","operon.name":"frv","operon.comments":"fructose-specific enzymes"}
{"gene.name":"frvX","gene.annotation":"","operon.name":"frv","operon.comments":"fructose-specific enzymes"}
{"gene.name":"rhaB","gene.annotation":"rhamnulokinase (EC 2.7.1.5)","operon.name":"rhaBAD","operon.comments":"L-rhamnose uptake"}
{"gene.name":"rhaA","gene.annotation":"L-rhamnose isomerase (EC 5.3.1.14)","operon.name":"rhaBAD","operon.comments":"L-rhamnose uptake"}
{"gene.name":"rhaD","gene.annotation":"D-ribose high-affinity transport system; membrane-associated protein","operon.name":"rhaBAD","operon.comments":"L-rhamnose uptake"}
{"gene.name":"cpxR","gene.annotation":"regulator","operon.name":"cpxAR","operon.comments":"two-component system"}
{"gene.name":"cpxA","gene.annotation":"kinase","operon.name":"cpxAR","operon.comments":"two-component system"}
{"gene.name":"glpF","gene.annotation":"glycerol diffusion facilitator","operon.name":"glpFK","operon.comments":"glycerol uptake"}
{"gene.name":"glpK","gene.annotation":"glycerol kinase","operon.name":"glpFK","operon.comments":"glycerol uptake"}
{"gene.name":"metB","gene.annotation":"cystathione gamma-synthase","operon.name":"metBL","operon.comments":"methionine biosynthesis"}
{"gene.name":"metL","gene.annotation":"aspartokinase II-homoserine dehydrogenase II","operon.name":"metBL","operon.comments":"methionine biosynthesis"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"metBL","operon.comments":"methionine biosynthesis"}
{"gene.name":"argC","gene.annotation":"N-acetyl-gamma-glutamylphosphate reductase (EC 1,2,1,38)","operon.name":"argECBH","operon.comments":"arginine biosynthesis"}
{"gene.name":"argB","gene.annotation":"acetylglutamate kinase (EC 2,7,2,8)","operon.name":"argECBH","operon.comments":"arginine biosynthesis"}
{"gene.name":"argH","gene.annotation":"argininosuccinate lyase (EC 4,3,2,1)","operon.name":"argECBH","operon.comments":"arginine biosynthesis"}
{"gene.name":"secE","gene.annotation":"preprotein translocase secE subunit","operon.name":"secE-nusG","operon.comments":"protein export & transcription"}
{"gene.name":"nusG","gene.annotation":"transcription antitermination","operon.name":"secE-nusG","operon.comments":"protein export & transcription"}
{"gene.name":"rplK","gene.annotation":"5OS ribosomal protein Lll","operon.name":"L11","operon.comments":"ribosomal protein"}
{"gene.name":"rplA","gene.annotation":"50S ribosomal protein Ll, regulates synthesis of Ll and Lll","operon.name":"L11","operon.comments":"ribosomal protein"}
{"gene.name":"rplJ","gene.annotation":"50S ribosomal protein L10","operon.name":"beta","operon.comments":"ribosomal protein"}
{"gene.name":"rplL","gene.annotation":"50S ribosomal protein L7/L12","operon.name":"beta","operon.comments":"ribosomal protein"}
{"gene.name":"rpoB","gene.annotation":"DNA-directed RNA polymerase beta chain","operon.name":"beta","operon.comments":"ribosomal protein"}
{"gene.name":"rpoC","gene.annotation":"DNA-directed RNA polymerase beta' chain","operon.name":"beta","operon.comments":"ribosomal protein"}
{"gene.name":"thiC","gene.annotation":"thiamin biosynthesis, pyrimidine moiety","operon.name":"thiCEFGH","operon.comments":"thiamin biosynthesis"}
{"gene.name":"thiE","gene.annotation":"thiamin biosynthesis, thiazole moiety","operon.name":"thiCEFGH","operon.comments":"thiamin biosynthesis"}
{"gene.name":"thiF","gene.annotation":"thiamin biosynthesis, thiazole moiety","operon.name":"thiCEFGH","operon.comments":"thiamin biosynthesis"}
{"gene.name":"thiG","gene.annotation":"thiamin biosynthesis, thiazole moiety","operon.name":"thiCEFGH","operon.comments":"thiamin biosynthesis"}
{"gene.name":"thiH","gene.annotation":"thlamin biosynthesis, thiazole moiety","operon.name":"thiCEFGH","operon.comments":"thiamin biosynthesis"}
{"gene.name":"hydH","gene.annotation":"kinase","operon.name":"hydHG","operon.comments":"two-component system"}
{"gene.name":"hydG","gene.annotation":"regurator; involved in the regulation of the labile hydrogenase activity","operon.name":"hydHG","operon.comments":"two-component system"}
{"gene.name":"purH","gene.annotation":"phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 7.1.1.3)","operon.name":"purHD","operon.comments":"purine nucleotide biosynthesis"}
{"gene.name":"purD","gene.annotation":"phosphoribosylglycinamide synthetase (EC 6.3.4.13)","operon.name":"purHD","operon.comments":"purine nucleotide biosynthesis"}
{"gene.name":"aceB","gene.annotation":"malate synthase A (EC 4.1.3.2)","operon.name":"ace","operon.comments":"malate synthase"}
{"gene.name":"aceA","gene.annotation":"isocitrate lyase (EC 4.1.3.1)","operon.name":"ace","operon.comments":"malate synthase"}
{"gene.name":"aceK","gene.annotation":"isocitrate dehydrogenase kinase/phosphatase (EC 2.7.1.116)","operon.name":"ace","operon.comments":"malate synthase"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"malEFG","operon.comments":"maltodextrins and maltose transport"}
{"gene.name":"malE","gene.annotation":"periplasmic maltose-binding protein","operon.name":"malEFG","operon.comments":"maltodextrins and maltose transport"}
{"gene.name":"malF","gene.annotation":"cytoplasmic maltose-binding protein","operon.name":"malEFG","operon.comments":"maltodextrins and maltose transport"}
{"gene.name":"malG","gene.annotation":"transport of maltose and maltodextrins","operon.name":"malEFG","operon.comments":"maltodextrins and maltose transport"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"malEFG","operon.comments":"maltodextrins and maltose transport"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"malK-lamB","operon.comments":"maltose, malto dextrins uptake"}
{"gene.name":"malK","gene.annotation":"transport of maltose","operon.name":"malK-lamB","operon.comments":"maltose, malto dextrins uptake"}
{"gene.name":"lamB","gene.annotation":"maltose porin; phage; lambda receptor protein","operon.name":"malK-lamB","operon.comments":"maltose, malto dextrins uptake"}
{"gene.name":"malM","gene.annotation":"periplasmic protein of mal operon","operon.name":"malK-lamB","operon.comments":"maltose, malto dextrins uptake"}
{"gene.name":"ubiC","gene.annotation":"chorismate lyase","operon.name":"ubiCA","operon.comments":"ubiquinone biosynthesis"}
{"gene.name":"ubiA","gene.annotation":"4-hydroxybenzoate-octaprenyl transferase","operon.name":"ubiCA","operon.comments":"ubiquinone biosynthesis"}
{"gene.name":"nrfA","gene.annotation":"cytochrome c family heme-binding; cytochrome C552 precursor","operon.name":"nrf","operon.comments":"nitrite reduction"}
{"gene.name":"nrfB","gene.annotation":"cytochrome c family heme-binding","operon.name":"nrf","operon.comments":"nitrite reduction"}
{"gene.name":"nrfC","gene.annotation":"4Fe-4S ferredoxins","operon.name":"nrf","operon.comments":"nitrite reduction"}
{"gene.name":"nrfD","gene.annotation":"NrfD protein","operon.name":"nrf","operon.comments":"nitrite reduction"}
{"gene.name":"nrfE","gene.annotation":"cytochrome c-type biogenesis protein NrfE","operon.name":"nrf","operon.comments":"nitrite reduction"}
{"gene.name":"nrfF","gene.annotation":"cytochrome c-type biogenesis protein NrfF","operon.name":"nrf","operon.comments":"nitrite reduction"}
{"gene.name":"nrfG","gene.annotation":"NrfG protein","operon.name":"nrf","operon.comments":"nitrite reduction"}
{"gene.name":"Regulation","gene.annotation":"pho box","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnC","gene.annotation":"ATP-binding protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnD","gene.annotation":"periplasmic protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnE","gene.annotation":"phosphonates transport system permease protein PhnE","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"3998","gene.annotation":"","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnF","gene.annotation":"PhnF protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnG","gene.annotation":"PhnG protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnH","gene.annotation":"PhnH protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnI","gene.annotation":"PhnI protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnJ","gene.annotation":"PhnJ protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnK","gene.annotation":"ATP-binding protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnL","gene.annotation":"ATP-binding protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnM","gene.annotation":"HisM-like integral membrane protein PhnM","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnN","gene.annotation":"ATP-binding protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnO","gene.annotation":"PhnO protein","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnP","gene.annotation":"PhnP protien","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"phnQ","gene.annotation":"very hypothetical PhnQ protei","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"phn","operon.comments":"phosphonate utilization"}
{"gene.name":"basR","gene.annotation":"regulator","operon.name":"basRS","operon.comments":"two-component system"}
{"gene.name":"basS","gene.annotation":"kinase","operon.name":"basRS","operon.comments":"two-component system"}
{"gene.name":"melA","gene.annotation":"(aga) a-galactosidase (EC 3.2.1.22)","operon.name":"melAB","operon.comments":"melibiose uptake"}
{"gene.name":"melB","gene.annotation":"thiomethylgalactoside permease II, melibiose carrier","operon.name":"melAB","operon.comments":"melibiose uptake"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"cad","operon.comments":"lysine decarboxylase"}
{"gene.name":"cadB","gene.annotation":"transport of lysine/cadaverine","operon.name":"cad","operon.comments":"lysine decarboxylase"}
{"gene.name":"cadA","gene.annotation":"lysine decarboxylase (EC 4.1.1.18)","operon.name":"cad","operon.comments":"lysine decarboxylase"}
{"gene.name":"Regulation","gene.annotation":"heat shock gene promoter","operon.name":"groE","operon.comments":"(mop) molecular chaperone"}
{"gene.name":"mopB","gene.annotation":"(groES) GroES protein","operon.name":"groE","operon.comments":"(mop) molecular chaperone"}
{"gene.name":"mopA","gene.annotation":"(groEL) GroEL protein","operon.name":"groE","operon.comments":"(mop) molecular chaperone"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"groE","operon.comments":"(mop) molecular chaperone"}
{"gene.name":"frdA","gene.annotation":"fumarate reductase (EC 1.3.99.1), flavoprotein subunit","operon.name":"frd","operon.comments":"fumarate reductase"}
{"gene.name":"frdB","gene.annotation":"fumarate reductase (EC 1.3.99.1), membrane anchor polypeptide","operon.name":"frd","operon.comments":"fumarate reductase"}
{"gene.name":"frdC","gene.annotation":"fumarate reductase (EC 1.3.99.1), membrane anchor polypeptide","operon.name":"frd","operon.comments":"fumarate reductase"}
{"gene.name":"frdD","gene.annotation":"fumarate reductase (EC 1.3.99.1), membrane anchor polypeptide","operon.name":"frd","operon.comments":"fumarate reductase"}
{"gene.name":"yjeF","gene.annotation":"hypothetical 54.7 kD protein in psd-amib intergenic region","operon.name":"amiB","operon.comments":"complex operon"}
{"gene.name":"yjeE","gene.annotation":"hypothetical 16.9 kD protein in psd-amib intergenic region","operon.name":"amiB","operon.comments":"complex operon"}
{"gene.name":"amiB","gene.annotation":"n-acetylmuramoyl-l-alanine amidase precursor","operon.name":"amiB","operon.comments":"complex operon"}
{"gene.name":"mutL","gene.annotation":"DNA mismatch repair protein mutL","operon.name":"amiB","operon.comments":"complex operon"}
{"gene.name":"miaA","gene.annotation":"tRNA delta-2-isopentenylpyrophosphate (IPP) transferase","operon.name":"amiB","operon.comments":"complex operon"}
{"gene.name":"hfq","gene.annotation":"host factor-I (HF-I)","operon.name":"amiB","operon.comments":"complex operon"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"hflA","operon.comments":"high frequency of lysogenization"}
{"gene.name":"hflX","gene.annotation":"putative GTPase","operon.name":"hflA","operon.comments":"high frequency of lysogenization"}
{"gene.name":"hflK","gene.annotation":"putative integral membrane protease","operon.name":"hflA","operon.comments":"high frequency of lysogenization"}
{"gene.name":"hflC","gene.annotation":"putative integral membrane protease","operon.name":"hflA","operon.comments":"high frequency of lysogenization"}
{"gene.name":"rpsF","gene.annotation":"30S ribosomal protein S6","operon.name":"rpsF-rplI","operon.comments":"ribosomal protein"}
{"gene.name":"priB","gene.annotation":"primosomal replication protein N","operon.name":"rpsF-rplI","operon.comments":"ribosomal protein"}
{"gene.name":"rpsR","gene.annotation":"30S ribosomal protein S18","operon.name":"rpsF-rplI","operon.comments":"ribosomal protein"}
{"gene.name":"rplI","gene.annotation":"SOS ribosomal protein L9","operon.name":"rpsF-rplI","operon.comments":"ribosomal protein"}
{"gene.name":"chpS","gene.annotation":"PemI-like protein 2","operon.name":"chpSB","operon.comments":"regulation of cell growth"}
{"gene.name":"chpB","gene.annotation":"PemK-like protein 2","operon.name":"chpSB","operon.comments":"regulation of cell growth"}
{"gene.name":"treB","gene.annotation":"phosphotransferase system trehalose permease","operon.name":"treBC","operon.comments":"trehalose uptake"}
{"gene.name":"treC","gene.annotation":"trehalose-6-phosphate hydrolase","operon.name":"treBC","operon.comments":"trehalose uptake"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"pyrBI","operon.comments":"pyrimidine biosynthesis"}
{"gene.name":"pyrB","gene.annotation":"aspartate carbamoyltransferase (EC 2.1.3.2), catalytic subunit","operon.name":"pyrBI","operon.comments":"pyrimidine biosynthesis"}
{"gene.name":"pyrI","gene.annotation":"aspartate carbamoyltransferase (EC 2.1.3.2), regulatory subunit","operon.name":"pyrBI","operon.comments":"pyrimidine biosynthesis"}
{"gene.name":"fecA","gene.annotation":"iron(III) dicitrate transport protein FecA precursor","operon.name":"fecABCDE","operon.comments":"citrate-dependent iron(III) transport"}
{"gene.name":"fecB","gene.annotation":"","operon.name":"fecABCDE","operon.comments":"citrate-dependent iron(III) transport"}
{"gene.name":"fecC","gene.annotation":"iron(III) dicitrate transport system permease protein","operon.name":"fecABCDE","operon.comments":"citrate-dependent iron(III) transport"}
{"gene.name":"fecD","gene.annotation":"iron(III) dicitrate transport system permease protein","operon.name":"fecABCDE","operon.comments":"citrate-dependent iron(III) transport"}
{"gene.name":"fecE","gene.annotation":"iron(III) dicitrate transport ATP-binding protein","operon.name":"fecABCDE","operon.comments":"citrate-dependent iron(III) transport"}
{"gene.name":"Regulation","gene.annotation":"CAP binding site","operon.name":"uxuAB","operon.comments":"glucuronate pathway"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"uxuAB","operon.comments":"glucuronate pathway"}
{"gene.name":"uxuA","gene.annotation":"mannonate dehydratase","operon.name":"uxuAB","operon.comments":"glucuronate pathway"}
{"gene.name":"uxuB","gene.annotation":"mannonate oxidoreductase","operon.name":"uxuAB","operon.comments":"glucuronate pathway"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"dnaTC","operon.comments":"DNA replication"}
{"gene.name":"dnaT","gene.annotation":"primosomal protein I","operon.name":"dnaTC","operon.comments":"DNA replication"}
{"gene.name":"dnaC","gene.annotation":"DNA replication protein DnaC","operon.name":"dnaTC","operon.comments":"DNA replication"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"deoC","gene.annotation":"2-deoxyribose 5-phosphate aldolase","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"Regulation","gene.annotation":"CRP binding sites","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"Regulation","gene.annotation":"promoter","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"deoA","gene.annotation":"thymidine phosphorylase (EC 2.4.2.4)","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"deoB","gene.annotation":"phosphopentomutase (EC 5.4.2.7)","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"deoD","gene.annotation":"purine nucleoside phosphorylase (EC 2.4.2.1)","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"Regulation","gene.annotation":"terminator","operon.name":"deoAB","operon.comments":"nucleotide and deoxyribonucleotide catabolism"}
{"gene.name":"serB","gene.annotation":"phosphoserine phosphatase","operon.name":"serBsms","operon.comments":"phosphatase & DNA repair"}
{"gene.name":"sms","gene.annotation":"Sms protein","operon.name":"serBsms","operon.comments":"phosphatase & DNA repair"}
{"gene.name":"creA","gene.annotation":"","operon.name":"creABCD","operon.comments":"phosphate sensor"}
{"gene.name":"creB","gene.annotation":"member of the two-component regulatory system CreC/CreB","operon.name":"creABCD","operon.comments":"phosphate sensor"}
{"gene.name":"creC","gene.annotation":"phoM; protein kinase","operon.name":"creABCD","operon.comments":"phosphate sensor"}
{"gene.name":"creD","gene.annotation":"inner membrane protein CreD","operon.name":"creABCD","operon.comments":"phosphate sensor"}