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{"Sequence":"AAAAAAALQAK","Length":11,"Modifications":"Unmodified","Modified.sequence":"_AAAAAAALQAK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":478.78036,"Charge":2,"m.z":478.77982,"Mass":955.54508,"Uncalibrated...Calibrated.m.z..ppm.":1.1607,"Uncalibrated...Calibrated.m.z..Da.":0.00056,"Mass.error..ppm.":-0.37526,"Mass.error..Da.":-0.00018,"Uncalibrated.mass.error..ppm.":0.7854,"Uncalibrated.mass.error..Da.":0.00038,"Max.intensity.m.z.0":478.77988,"Retention.time":6.3763,"Retention.length":0.05922,"Calibrated.retention.time":6.3763,"Calibrated.retention.time.start":6.3411,"Calibrated.retention.time.finish":6.4004,"Retention.time.calibration":0,"Number.of.data.points":14,"Number.of.scans":5,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00077,"MS.MS.count":1,"MS.MS.scan.number":4320,"Score":88.819,"Delta.score":70.484,"Combinatorics":1,"Intensity":17553000,"Reverse":"","Potential.contaminant":"","id":22,"Protein.group.IDs":"1276","Peptide.ID":0,"Mod..peptide.ID":0,"MS.MS.IDs":"22","Best.MS.MS":22,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"AAAAAATAPPSPGPAQPGPR","Length":20,"Modifications":"Phospho (STY)","Modified.sequence":"_AAAAAAT(Phospho (STY))APPSPGPAQPGPR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAAAT(0.953)APPS(0.047)PGPAQPGPR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAAAT(13)APPS(-13)PGPAQPGPR","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":0,"Proteins":"Q6SPF0","Leading.proteins":"sp|Q6SPF0|SAMD1_HUMANAtherinOS=Homosapiens(Human)OX=9606GN=SAMD1PE=1SV=1","Leading.razor.protein":"sp|Q6SPF0|SAMD1_HUMANAtherinOS=Homosapiens(Human)OX=9606GN=SAMD1PE=1SV=1","Type":"MULTI-SECPEP","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_06","Experiment":"H100_Y50_06","MS.MS.m.z":612.74884,"Charge":3,"m.z":612.63151,"Mass":1834.87271,"Uncalibrated...Calibrated.m.z..ppm.":3.866,"Uncalibrated...Calibrated.m.z..Da.":0.00237,"Mass.error..ppm.":1.3823,"Mass.error..Da.":0.00085,"Uncalibrated.mass.error..ppm.":5.2483,"Uncalibrated.mass.error..Da.":0.00322,"Max.intensity.m.z.0":612.96611,"Retention.time":8.2265,"Retention.length":0.12046,"Calibrated.retention.time":8.2265,"Calibrated.retention.time.start":8.1794,"Calibrated.retention.time.finish":8.2998,"Retention.time.calibration":0,"Number.of.data.points":21,"Number.of.scans":11,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00489,"MS.MS.count":1,"MS.MS.scan.number":6379,"Score":40.428,"Delta.score":34.884,"Combinatorics":2,"Intensity":13804000,"Reverse":"","Potential.contaminant":"","id":23,"Protein.group.IDs":"2884","Peptide.ID":1,"Mod..peptide.ID":1,"MS.MS.IDs":"23","Best.MS.MS":23,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"10076"}
{"Sequence":"AAAALAGGKK","Length":10,"Modifications":"Unmodified","Modified.sequence":"_AAAALAGGKK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"Q3E792","Leading.proteins":"sp|Q3E792|RS25A_YEAST40SribosomalproteinS25-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPS25APE=1SV=1","Leading.razor.protein":"sp|Q3E792|RS25A_YEAST40SribosomalproteinS25-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPS25APE=1SV=1","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":429.2648,"Charge":2,"m.z":429.2638,"Mass":856.51305,"Uncalibrated...Calibrated.m.z..ppm.":1.3773,"Uncalibrated...Calibrated.m.z..Da.":0.00059,"Mass.error..ppm.":0.90967,"Mass.error..Da.":0.00039,"Uncalibrated.mass.error..ppm.":2.287,"Uncalibrated.mass.error..Da.":0.00098,"Max.intensity.m.z.0":429.26412,"Retention.time":3.9795,"Retention.length":0.03914,"Calibrated.retention.time":3.9795,"Calibrated.retention.time.start":3.955,"Calibrated.retention.time.finish":3.9942,"Retention.time.calibration":0,"Number.of.data.points":7,"Number.of.scans":3,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.0103,"MS.MS.count":1,"MS.MS.scan.number":1172,"Score":60.436,"Delta.score":45.059,"Combinatorics":1,"Intensity":50057000,"Reverse":"","Potential.contaminant":"","id":24,"Protein.group.IDs":"519","Peptide.ID":2,"Mod..peptide.ID":2,"MS.MS.IDs":"24","Best.MS.MS":24,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.023)RVS(0.977)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-16)RVS(16)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_02","Experiment":"H100_Y25_02","MS.MS.m.z":904.91058,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.8262,"Uncalibrated...Calibrated.m.z..Da.":0.00346,"Mass.error..ppm.":0.06244,"Mass.error..Da.":0.00006,"Uncalibrated.mass.error..ppm.":3.8886,"Uncalibrated.mass.error..Da.":0.00352,"Max.intensity.m.z.0":904.90681,"Retention.time":9.2382,"Retention.length":0.0705,"Calibrated.retention.time":9.2382,"Calibrated.retention.time.start":9.2028,"Calibrated.retention.time.finish":9.2733,"Retention.time.calibration":0,"Number.of.data.points":21,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.1698e-16,"MS.MS.count":1,"MS.MS.scan.number":7967,"Score":93.404,"Delta.score":78.52,"Combinatorics":2,"Intensity":30954000,"Reverse":"","Potential.contaminant":"","id":25,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"25","Best.MS.MS":25,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.14)RVS(0.86)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-7.9)RVS(7.9)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_03","Experiment":"H100_Y25_03","MS.MS.m.z":904.91174,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":5.0555,"Uncalibrated...Calibrated.m.z..Da.":0.00457,"Mass.error..ppm.":0.22078,"Mass.error..Da.":0.0002,"Uncalibrated.mass.error..ppm.":5.2763,"Uncalibrated.mass.error..Da.":0.00477,"Max.intensity.m.z.0":904.90657,"Retention.time":9.2366,"Retention.length":0.08094,"Calibrated.retention.time":9.2366,"Calibrated.retention.time.start":9.1932,"Calibrated.retention.time.finish":9.2742,"Retention.time.calibration":0,"Number.of.data.points":23,"Number.of.scans":7,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.3294e-19,"MS.MS.count":1,"MS.MS.scan.number":7960,"Score":109.39,"Delta.score":90.223,"Combinatorics":2,"Intensity":35613000,"Reverse":"","Potential.contaminant":"","id":26,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"26","Best.MS.MS":26,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.541)RVS(0.459)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.71)RVS(-0.71)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_04","Experiment":"H100_Y25_04","MS.MS.m.z":904.91125,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.9631,"Uncalibrated...Calibrated.m.z..Da.":0.00359,"Mass.error..ppm.":0.21894,"Mass.error..Da.":0.0002,"Uncalibrated.mass.error..ppm.":4.182,"Uncalibrated.mass.error..Da.":0.00378,"Max.intensity.m.z.0":904.9068,"Retention.time":9.2684,"Retention.length":0.07091,"Calibrated.retention.time":9.2684,"Calibrated.retention.time.start":9.2329,"Calibrated.retention.time.finish":9.3038,"Retention.time.calibration":0,"Number.of.data.points":16,"Number.of.scans":6,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":4.653e-16,"MS.MS.count":1,"MS.MS.scan.number":7983,"Score":101.5,"Delta.score":84.874,"Combinatorics":2,"Intensity":33264000,"Reverse":"","Potential.contaminant":"","id":27,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"27","Best.MS.MS":27,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.123)RVS(0.877)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-8.5)RVS(8.5)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_05","Experiment":"H100_Y25_05","MS.MS.m.z":904.90851,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.028,"Uncalibrated...Calibrated.m.z..Da.":0.00364,"Mass.error..ppm.":0.43877,"Mass.error..Da.":0.0004,"Uncalibrated.mass.error..ppm.":4.4667,"Uncalibrated.mass.error..Da.":0.00404,"Max.intensity.m.z.0":904.90667,"Retention.time":9.2981,"Retention.length":0.0706,"Calibrated.retention.time":9.2981,"Calibrated.retention.time.start":9.2629,"Calibrated.retention.time.finish":9.3335,"Retention.time.calibration":0,"Number.of.data.points":20,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.3948e-13,"MS.MS.count":1,"MS.MS.scan.number":8009,"Score":94.542,"Delta.score":75.398,"Combinatorics":2,"Intensity":32502000,"Reverse":"","Potential.contaminant":"","id":28,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"28","Best.MS.MS":28,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.536)RVS(0.464)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.62)RVS(-0.62)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_06","Experiment":"H100_Y25_06","MS.MS.m.z":904.91119,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.8052,"Uncalibrated...Calibrated.m.z..Da.":0.00435,"Mass.error..ppm.":-0.23638,"Mass.error..Da.":-0.00021,"Uncalibrated.mass.error..ppm.":4.5688,"Uncalibrated.mass.error..Da.":0.00413,"Max.intensity.m.z.0":904.90662,"Retention.time":9.8594,"Retention.length":0.09092,"Calibrated.retention.time":9.8594,"Calibrated.retention.time.start":9.8192,"Calibrated.retention.time.finish":9.9102,"Retention.time.calibration":0,"Number.of.data.points":23,"Number.of.scans":8,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.1278e-16,"MS.MS.count":1,"MS.MS.scan.number":8474,"Score":104.53,"Delta.score":79.908,"Combinatorics":2,"Intensity":33897000,"Reverse":"","Potential.contaminant":"","id":29,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"29","Best.MS.MS":29,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.533)RVS(0.467)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.58)RVS(-0.58)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_01","Experiment":"H100_Y50_01","MS.MS.m.z":904.91022,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.6431,"Uncalibrated...Calibrated.m.z..Da.":0.0042,"Mass.error..ppm.":-0.28771,"Mass.error..Da.":-0.00026,"Uncalibrated.mass.error..ppm.":4.3554,"Uncalibrated.mass.error..Da.":0.00394,"Max.intensity.m.z.0":904.90649,"Retention.time":9.1628,"Retention.length":0.12079,"Calibrated.retention.time":9.1628,"Calibrated.retention.time.start":9.1275,"Calibrated.retention.time.finish":9.2483,"Retention.time.calibration":0,"Number.of.data.points":26,"Number.of.scans":11,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":6.2639e-14,"MS.MS.count":1,"MS.MS.scan.number":7872,"Score":95.123,"Delta.score":75.979,"Combinatorics":2,"Intensity":27746000,"Reverse":"","Potential.contaminant":"","id":30,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"30","Best.MS.MS":30,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.16)RVS(0.84)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-7.2)RVS(7.2)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_02","Experiment":"H100_Y50_02","MS.MS.m.z":904.91071,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.0695,"Uncalibrated...Calibrated.m.z..Da.":0.00368,"Mass.error..ppm.":-0.16385,"Mass.error..Da.":-0.00015,"Uncalibrated.mass.error..ppm.":3.9056,"Uncalibrated.mass.error..Da.":0.00353,"Max.intensity.m.z.0":904.9066,"Retention.time":9.1576,"Retention.length":0.07057,"Calibrated.retention.time":9.1576,"Calibrated.retention.time.start":9.1144,"Calibrated.retention.time.finish":9.1849,"Retention.time.calibration":0,"Number.of.data.points":22,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.5108e-19,"MS.MS.count":1,"MS.MS.scan.number":7852,"Score":109.41,"Delta.score":89.677,"Combinatorics":2,"Intensity":28236000,"Reverse":"","Potential.contaminant":"","id":31,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"31","Best.MS.MS":31,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.032)RVS(0.968)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-15)RVS(15)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_05","Experiment":"H100_Y50_05","MS.MS.m.z":904.91028,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.914,"Uncalibrated...Calibrated.m.z..Da.":0.00354,"Mass.error..ppm.":0.39638,"Mass.error..Da.":0.00036,"Uncalibrated.mass.error..ppm.":4.3104,"Uncalibrated.mass.error..Da.":0.0039,"Max.intensity.m.z.0":905.4087,"Retention.time":9.228,"Retention.length":0.0708,"Calibrated.retention.time":9.228,"Calibrated.retention.time.start":9.1925,"Calibrated.retention.time.finish":9.2633,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.3306e-24,"MS.MS.count":1,"MS.MS.scan.number":7966,"Score":127.35,"Delta.score":108.18,"Combinatorics":2,"Intensity":32325000,"Reverse":"","Potential.contaminant":"","id":32,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"32","Best.MS.MS":32,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.531)RVS(0.469)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.54)RVS(-0.54)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_06","Experiment":"H100_Y50_06","MS.MS.m.z":905.41217,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.7114,"Uncalibrated...Calibrated.m.z..Da.":0.00426,"Mass.error..ppm.":-0.31993,"Mass.error..Da.":-0.00029,"Uncalibrated.mass.error..ppm.":4.3915,"Uncalibrated.mass.error..Da.":0.00397,"Max.intensity.m.z.0":904.9065,"Retention.time":9.8532,"Retention.length":0.14143,"Calibrated.retention.time":9.8532,"Calibrated.retention.time.start":9.7877,"Calibrated.retention.time.finish":9.9291,"Retention.time.calibration":0,"Number.of.data.points":34,"Number.of.scans":13,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.7352e-13,"MS.MS.count":1,"MS.MS.scan.number":8468,"Score":86.006,"Delta.score":66.863,"Combinatorics":2,"Intensity":39330000,"Reverse":"","Potential.contaminant":"","id":33,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"33","Best.MS.MS":33,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.155)RVS(0.845)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-7.4)RVS(7.4)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_01","Experiment":"H100_Y100_01","MS.MS.m.z":904.91046,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.1842,"Uncalibrated...Calibrated.m.z..Da.":0.00288,"Mass.error..ppm.":0.14388,"Mass.error..Da.":0.00013,"Uncalibrated.mass.error..ppm.":3.3281,"Uncalibrated.mass.error..Da.":0.00301,"Max.intensity.m.z.0":904.9067,"Retention.time":9.1535,"Retention.length":0.07042,"Calibrated.retention.time":9.1535,"Calibrated.retention.time.start":9.1178,"Calibrated.retention.time.finish":9.1882,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.0131e-19,"MS.MS.count":1,"MS.MS.scan.number":7866,"Score":117.62,"Delta.score":98.477,"Combinatorics":2,"Intensity":31604000,"Reverse":"","Potential.contaminant":"","id":34,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"34","Best.MS.MS":34,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.538)RVS(0.462)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.67)RVS(-0.67)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_02","Experiment":"H100_Y100_02","MS.MS.m.z":904.91119,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.0032,"Uncalibrated...Calibrated.m.z..Da.":0.00362,"Mass.error..ppm.":-0.0279,"Mass.error..Da.":-0.00003,"Uncalibrated.mass.error..ppm.":3.9753,"Uncalibrated.mass.error..Da.":0.0036,"Max.intensity.m.z.0":904.90629,"Retention.time":9.2224,"Retention.length":0.0806,"Calibrated.retention.time":9.2224,"Calibrated.retention.time.start":9.1775,"Calibrated.retention.time.finish":9.2581,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":7,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.3019e-19,"MS.MS.count":1,"MS.MS.scan.number":7943,"Score":114.2,"Delta.score":89.585,"Combinatorics":2,"Intensity":32486000,"Reverse":"","Potential.contaminant":"","id":35,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"35","Best.MS.MS":35,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.536)RVS(0.464)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.62)RVS(-0.62)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_03","Experiment":"H100_Y100_03","MS.MS.m.z":904.91046,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.5924,"Uncalibrated...Calibrated.m.z..Da.":0.00416,"Mass.error..ppm.":-0.06665,"Mass.error..Da.":-0.00006,"Uncalibrated.mass.error..ppm.":4.5258,"Uncalibrated.mass.error..Da.":0.0041,"Max.intensity.m.z.0":904.9064,"Retention.time":9.1911,"Retention.length":0.12113,"Calibrated.retention.time":9.1911,"Calibrated.retention.time.start":9.1558,"Calibrated.retention.time.finish":9.2769,"Retention.time.calibration":0,"Number.of.data.points":23,"Number.of.scans":11,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.0057e-16,"MS.MS.count":1,"MS.MS.scan.number":7923,"Score":104.53,"Delta.score":85.382,"Combinatorics":2,"Intensity":38744000,"Reverse":"","Potential.contaminant":"","id":36,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"36","Best.MS.MS":36,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.184)RVS(0.816)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-6.5)RVS(6.5)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_05","Experiment":"H100_Y100_05","MS.MS.m.z":904.91205,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":5.8237,"Uncalibrated...Calibrated.m.z..Da.":0.00527,"Mass.error..ppm.":-1.7035,"Mass.error..Da.":-0.00154,"Uncalibrated.mass.error..ppm.":4.1202,"Uncalibrated.mass.error..Da.":0.00373,"Max.intensity.m.z.0":904.90609,"Retention.time":9.8798,"Retention.length":0.10016,"Calibrated.retention.time":9.8798,"Calibrated.retention.time.start":9.8348,"Calibrated.retention.time.finish":9.9349,"Retention.time.calibration":0,"Number.of.data.points":27,"Number.of.scans":9,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":6.2088e-09,"MS.MS.count":1,"MS.MS.scan.number":8493,"Score":78.758,"Delta.score":74.124,"Combinatorics":2,"Intensity":13625000,"Reverse":"","Potential.contaminant":"","id":37,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"37","Best.MS.MS":37,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.538)RVS(0.462)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.67)RVS(-0.67)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_06","Experiment":"H100_Y100_06","MS.MS.m.z":904.91205,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":5.4431,"Uncalibrated...Calibrated.m.z..Da.":0.00493,"Mass.error..ppm.":0.36265,"Mass.error..Da.":0.00033,"Uncalibrated.mass.error..ppm.":5.8058,"Uncalibrated.mass.error..Da.":0.00525,"Max.intensity.m.z.0":904.90707,"Retention.time":9.8255,"Retention.length":0.13146,"Calibrated.retention.time":9.8255,"Calibrated.retention.time.start":9.7744,"Calibrated.retention.time.finish":9.9059,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":12,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.4421e-13,"MS.MS.count":1,"MS.MS.scan.number":8418,"Score":79.426,"Delta.score":60.283,"Combinatorics":2,"Intensity":20906000,"Reverse":"","Potential.contaminant":"","id":38,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"38","Best.MS.MS":38,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.137)RVS(0.863)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-8)RVS(8)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_01","Experiment":"H100_Y150_01","MS.MS.m.z":904.90961,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.5818,"Uncalibrated...Calibrated.m.z..Da.":0.00324,"Mass.error..ppm.":0.06803,"Mass.error..Da.":0.00006,"Uncalibrated.mass.error..ppm.":3.6498,"Uncalibrated.mass.error..Da.":0.0033,"Max.intensity.m.z.0":904.90668,"Retention.time":9.1593,"Retention.length":0.0905,"Calibrated.retention.time":9.1593,"Calibrated.retention.time.start":9.1319,"Calibrated.retention.time.finish":9.2224,"Retention.time.calibration":0,"Number.of.data.points":19,"Number.of.scans":8,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.5967e-39,"MS.MS.count":1,"MS.MS.scan.number":7895,"Score":152.48,"Delta.score":128.45,"Combinatorics":2,"Intensity":30172000,"Reverse":"","Potential.contaminant":"","id":39,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"39","Best.MS.MS":39,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.16)RVS(0.84)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-7.2)RVS(7.2)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_02","Experiment":"H100_Y150_02","MS.MS.m.z":904.90991,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.8284,"Uncalibrated...Calibrated.m.z..Da.":0.00346,"Mass.error..ppm.":-0.06126,"Mass.error..Da.":-0.00006,"Uncalibrated.mass.error..ppm.":3.7671,"Uncalibrated.mass.error..Da.":0.00341,"Max.intensity.m.z.0":904.9062,"Retention.time":9.1984,"Retention.length":0.07074,"Calibrated.retention.time":9.1984,"Calibrated.retention.time.start":9.1626,"Calibrated.retention.time.finish":9.2333,"Retention.time.calibration":0,"Number.of.data.points":19,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.5108e-19,"MS.MS.count":1,"MS.MS.scan.number":7936,"Score":109.41,"Delta.score":95.181,"Combinatorics":2,"Intensity":29663000,"Reverse":"","Potential.contaminant":"","id":40,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"40","Best.MS.MS":40,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.13)RVS(0.87)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-8.3)RVS(8.3)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_03","Experiment":"H100_Y150_03","MS.MS.m.z":904.91052,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.4665,"Uncalibrated...Calibrated.m.z..Da.":0.00314,"Mass.error..ppm.":0.53338,"Mass.error..Da.":0.00048,"Uncalibrated.mass.error..ppm.":3.9999,"Uncalibrated.mass.error..Da.":0.00362,"Max.intensity.m.z.0":904.90702,"Retention.time":9.1966,"Retention.length":0.07053,"Calibrated.retention.time":9.1966,"Calibrated.retention.time.start":9.1581,"Calibrated.retention.time.finish":9.2287,"Retention.time.calibration":0,"Number.of.data.points":20,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.7781e-24,"MS.MS.count":1,"MS.MS.scan.number":7887,"Score":127.28,"Delta.score":103.39,"Combinatorics":2,"Intensity":32185000,"Reverse":"","Potential.contaminant":"","id":41,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"41","Best.MS.MS":41,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.135)RVS(0.865)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-8.1)RVS(8.1)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_04","Experiment":"H100_Y150_04","MS.MS.m.z":905.41132,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.1215,"Uncalibrated...Calibrated.m.z..Da.":0.00373,"Mass.error..ppm.":-0.47556,"Mass.error..Da.":-0.00043,"Uncalibrated.mass.error..ppm.":3.646,"Uncalibrated.mass.error..Da.":0.0033,"Max.intensity.m.z.0":904.90638,"Retention.time":9.2234,"Retention.length":0.07076,"Calibrated.retention.time":9.2234,"Calibrated.retention.time.start":9.1882,"Calibrated.retention.time.finish":9.259,"Retention.time.calibration":0,"Number.of.data.points":20,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.8376e-19,"MS.MS.count":1,"MS.MS.scan.number":7954,"Score":118.22,"Delta.score":93.602,"Combinatorics":2,"Intensity":35110000,"Reverse":"","Potential.contaminant":"","id":42,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"42","Best.MS.MS":42,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.178)RVS(0.822)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-6.7)RVS(6.7)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_05","Experiment":"H100_Y150_05","MS.MS.m.z":904.91089,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":5.2629,"Uncalibrated...Calibrated.m.z..Da.":0.00476,"Mass.error..ppm.":-1.5967,"Mass.error..Da.":-0.00144,"Uncalibrated.mass.error..ppm.":3.6662,"Uncalibrated.mass.error..Da.":0.00332,"Max.intensity.m.z.0":904.90668,"Retention.time":9.8025,"Retention.length":0.12055,"Calibrated.retention.time":9.8025,"Calibrated.retention.time.start":9.7189,"Calibrated.retention.time.finish":9.8395,"Retention.time.calibration":0,"Number.of.data.points":26,"Number.of.scans":11,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.0956e-13,"MS.MS.count":1,"MS.MS.scan.number":8426,"Score":86.08,"Delta.score":68.067,"Combinatorics":2,"Intensity":30449000,"Reverse":"","Potential.contaminant":"","id":43,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"43","Best.MS.MS":43,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.549)RVS(0.451)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.85)RVS(-0.85)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_06","Experiment":"H100_Y150_06","MS.MS.m.z":904.91132,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.9354,"Uncalibrated...Calibrated.m.z..Da.":0.00447,"Mass.error..ppm.":0.31294,"Mass.error..Da.":0.00028,"Uncalibrated.mass.error..ppm.":5.2484,"Uncalibrated.mass.error..Da.":0.00475,"Max.intensity.m.z.0":904.90697,"Retention.time":9.8324,"Retention.length":0.09062,"Calibrated.retention.time":9.8324,"Calibrated.retention.time.start":9.7969,"Calibrated.retention.time.finish":9.8875,"Retention.time.calibration":0,"Number.of.data.points":23,"Number.of.scans":8,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.8697e-19,"MS.MS.count":1,"MS.MS.scan.number":8411,"Score":110.26,"Delta.score":91.093,"Combinatorics":2,"Intensity":32559000,"Reverse":"","Potential.contaminant":"","id":44,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"44","Best.MS.MS":44,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.16)RVS(0.84)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-7.2)RVS(7.2)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_01","Experiment":"H100_Y200_01","MS.MS.m.z":904.90967,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":2.8464,"Uncalibrated...Calibrated.m.z..Da.":0.00258,"Mass.error..ppm.":0.54944,"Mass.error..Da.":0.0005,"Uncalibrated.mass.error..ppm.":3.3958,"Uncalibrated.mass.error..Da.":0.00307,"Max.intensity.m.z.0":904.90723,"Retention.time":9.1453,"Retention.length":0.10071,"Calibrated.retention.time":9.1453,"Calibrated.retention.time.start":9.1099,"Calibrated.retention.time.finish":9.2106,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":9,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.8697e-19,"MS.MS.count":1,"MS.MS.scan.number":7875,"Score":109.41,"Delta.score":85.378,"Combinatorics":2,"Intensity":36257000,"Reverse":"","Potential.contaminant":"","id":45,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"45","Best.MS.MS":45,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDS(Phospho (STY))RVSEEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.543)RVS(0.457)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(0.76)RVS(-0.76)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_03","Experiment":"H100_Y200_03","MS.MS.m.z":904.90985,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.0893,"Uncalibrated...Calibrated.m.z..Da.":0.0028,"Mass.error..ppm.":0.77748,"Mass.error..Da.":0.0007,"Uncalibrated.mass.error..ppm.":3.8668,"Uncalibrated.mass.error..Da.":0.0035,"Max.intensity.m.z.0":904.90725,"Retention.time":9.1624,"Retention.length":0.11094,"Calibrated.retention.time":9.1624,"Calibrated.retention.time.start":9.1267,"Calibrated.retention.time.finish":9.2377,"Retention.time.calibration":0,"Number.of.data.points":21,"Number.of.scans":10,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.7233e-16,"MS.MS.count":1,"MS.MS.scan.number":7911,"Score":94.389,"Delta.score":70.357,"Combinatorics":2,"Intensity":36578000,"Reverse":"","Potential.contaminant":"","id":46,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"46","Best.MS.MS":46,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.15)RVS(0.85)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-7.5)RVS(7.5)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_04","Experiment":"H100_Y200_04","MS.MS.m.z":904.90973,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.2076,"Uncalibrated...Calibrated.m.z..Da.":0.0029,"Mass.error..ppm.":0.2768,"Mass.error..Da.":0.00025,"Uncalibrated.mass.error..ppm.":3.4844,"Uncalibrated.mass.error..Da.":0.00315,"Max.intensity.m.z.0":904.9069,"Retention.time":9.2139,"Retention.length":0.07069,"Calibrated.retention.time":9.2139,"Calibrated.retention.time.start":9.1739,"Calibrated.retention.time.finish":9.2446,"Retention.time.calibration":0,"Number.of.data.points":19,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.2918e-24,"MS.MS.count":1,"MS.MS.scan.number":7948,"Score":126.04,"Delta.score":102.01,"Combinatorics":2,"Intensity":34796000,"Reverse":"","Potential.contaminant":"","id":47,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"47","Best.MS.MS":47,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.16)RVS(0.84)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-7.2)RVS(7.2)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_05","Experiment":"H100_Y200_05","MS.MS.m.z":904.91101,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.2741,"Uncalibrated...Calibrated.m.z..Da.":0.00387,"Mass.error..ppm.":-0.57812,"Mass.error..Da.":-0.00052,"Uncalibrated.mass.error..ppm.":3.696,"Uncalibrated.mass.error..Da.":0.00334,"Max.intensity.m.z.0":904.90687,"Retention.time":9.8066,"Retention.length":0.06019,"Calibrated.retention.time":9.8066,"Calibrated.retention.time.start":9.7752,"Calibrated.retention.time.finish":9.8354,"Retention.time.calibration":0,"Number.of.data.points":17,"Number.of.scans":5,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.3877e-19,"MS.MS.count":1,"MS.MS.scan.number":8451,"Score":109.41,"Delta.score":85.378,"Combinatorics":2,"Intensity":35428000,"Reverse":"","Potential.contaminant":"","id":48,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"48","Best.MS.MS":48,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.033)RVS(0.967)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-15)RVS(15)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_06","Experiment":"H100_Y200_06","MS.MS.m.z":904.91113,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.439,"Uncalibrated...Calibrated.m.z..Da.":0.00402,"Mass.error..ppm.":0.27648,"Mass.error..Da.":0.00025,"Uncalibrated.mass.error..ppm.":4.7155,"Uncalibrated.mass.error..Da.":0.00427,"Max.intensity.m.z.0":904.90667,"Retention.time":9.8047,"Retention.length":0.10068,"Calibrated.retention.time":9.8047,"Calibrated.retention.time.start":9.7632,"Calibrated.retention.time.finish":9.8639,"Retention.time.calibration":0,"Number.of.data.points":24,"Number.of.scans":9,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.0287e-16,"MS.MS.count":1,"MS.MS.scan.number":8422,"Score":101.41,"Delta.score":76.794,"Combinatorics":2,"Intensity":29752000,"Reverse":"","Potential.contaminant":"","id":49,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"49","Best.MS.MS":49,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.129)RVS(0.871)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-8.3)RVS(8.3)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_01","Experiment":"Honly_ind_01","MS.MS.m.z":905.41138,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":4.2001,"Uncalibrated...Calibrated.m.z..Da.":0.0038,"Mass.error..ppm.":-0.48025,"Mass.error..Da.":-0.00043,"Uncalibrated.mass.error..ppm.":3.7198,"Uncalibrated.mass.error..Da.":0.00337,"Max.intensity.m.z.0":904.90649,"Retention.time":8.9989,"Retention.length":0.10123,"Calibrated.retention.time":8.9989,"Calibrated.retention.time.start":8.9534,"Calibrated.retention.time.finish":9.0546,"Retention.time.calibration":0,"Number.of.data.points":28,"Number.of.scans":9,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.7753e-13,"MS.MS.count":1,"MS.MS.scan.number":7672,"Score":85.467,"Delta.score":67.454,"Combinatorics":2,"Intensity":39445000,"Reverse":"","Potential.contaminant":"","id":50,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"50","Best.MS.MS":50,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.135)RVS(0.865)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-8.1)RVS(8.1)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_02","Experiment":"Honly_ind_02","MS.MS.m.z":905.41217,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":3.196,"Uncalibrated...Calibrated.m.z..Da.":0.00289,"Mass.error..ppm.":0.1775,"Mass.error..Da.":0.00016,"Uncalibrated.mass.error..ppm.":3.3735,"Uncalibrated.mass.error..Da.":0.00305,"Max.intensity.m.z.0":904.90667,"Retention.time":8.9939,"Retention.length":0.0712,"Calibrated.retention.time":8.9939,"Calibrated.retention.time.start":8.9582,"Calibrated.retention.time.finish":9.0294,"Retention.time.calibration":0,"Number.of.data.points":21,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":6.1682e-20,"MS.MS.count":1,"MS.MS.scan.number":7687,"Score":118.22,"Delta.score":94.188,"Combinatorics":2,"Intensity":60410000,"Reverse":"","Potential.contaminant":"","id":51,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"51","Best.MS.MS":51,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
{"Sequence":"AAAAPDSRVSEEENLK","Length":16,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAAPDSRVS(Phospho (STY))EEENLK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAAPDS(0.017)RVS(0.983)EEENLK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAAPDS(-18)RVS(18)EEENLK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q9Y3B9","Leading.proteins":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Leading.razor.protein":"sp|Q9Y3B9|RRP15_HUMANRRP15-likeproteinOS=Homosapiens(Human)OX=9606GN=RRP15PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_03","Experiment":"Honly_ind_03","MS.MS.m.z":904.90881,"Charge":2,"m.z":904.90675,"Mass":1807.79894,"Uncalibrated...Calibrated.m.z..ppm.":2.6691,"Uncalibrated...Calibrated.m.z..Da.":0.00242,"Mass.error..ppm.":-0.13735,"Mass.error..Da.":-0.00012,"Uncalibrated.mass.error..ppm.":2.5318,"Uncalibrated.mass.error..Da.":0.00229,"Max.intensity.m.z.0":904.90639,"Retention.time":8.9872,"Retention.length":0.09158,"Calibrated.retention.time":8.9872,"Calibrated.retention.time.start":8.9476,"Calibrated.retention.time.finish":9.0392,"Retention.time.calibration":0,"Number.of.data.points":25,"Number.of.scans":8,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":9.4285e-25,"MS.MS.count":1,"MS.MS.scan.number":7668,"Score":136.56,"Delta.score":112.53,"Combinatorics":2,"Intensity":72997000,"Reverse":"","Potential.contaminant":"","id":52,"Protein.group.IDs":"3651","Peptide.ID":3,"Mod..peptide.ID":3,"MS.MS.IDs":"52","Best.MS.MS":52,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"8490;8491"}
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{"Sequence":"AAADALSDLEIKDSK","Length":15,"Modifications":"Phospho (STY)","Modified.sequence":"_AAADALSDLEIKDS(Phospho (STY))K_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAADALSDLEIKDS(1)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAADALS(-33)DLEIKDS(33)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":813.88727,"Charge":2,"m.z":813.88475,"Mass":1625.75495,"Uncalibrated...Calibrated.m.z..ppm.":2.1686,"Uncalibrated...Calibrated.m.z..Da.":0.00176,"Mass.error..ppm.":0.65251,"Mass.error..Da.":0.00053,"Uncalibrated.mass.error..ppm.":2.8212,"Uncalibrated.mass.error..Da.":0.0023,"Max.intensity.m.z.0":813.88512,"Retention.time":11.978,"Retention.length":0.13121,"Calibrated.retention.time":11.978,"Calibrated.retention.time.start":11.928,"Calibrated.retention.time.finish":12.059,"Retention.time.calibration":0,"Number.of.data.points":30,"Number.of.scans":12,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.1266e-15,"MS.MS.count":1,"MS.MS.scan.number":11609,"Score":112.36,"Delta.score":110.78,"Combinatorics":2,"Intensity":53548000,"Reverse":"","Potential.contaminant":"","id":138,"Protein.group.IDs":"516","Peptide.ID":5,"Mod..peptide.ID":6,"MS.MS.IDs":"139","Best.MS.MS":139,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"946;947"}
{"Sequence":"AAADALSDLEIKDSK","Length":15,"Modifications":"Phospho (STY)","Modified.sequence":"_AAADALSDLEIKDS(Phospho (STY))K_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAADALS(0.14)DLEIKDS(0.86)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAADALS(-7.9)DLEIKDS(7.9)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_03","Experiment":"Yonly_ind_03","MS.MS.m.z":542.92749,"Charge":3,"m.z":542.92559,"Mass":1625.75495,"Uncalibrated...Calibrated.m.z..ppm.":3.6488,"Uncalibrated...Calibrated.m.z..Da.":0.00198,"Mass.error..ppm.":0.05712,"Mass.error..Da.":0.00003,"Uncalibrated.mass.error..ppm.":3.7059,"Uncalibrated.mass.error..Da.":0.00201,"Max.intensity.m.z.0":542.92561,"Retention.time":11.975,"Retention.length":0.38627,"Calibrated.retention.time":11.975,"Calibrated.retention.time.start":11.791,"Calibrated.retention.time.finish":12.177,"Retention.time.calibration":0,"Number.of.data.points":108,"Number.of.scans":37,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.2398e-06,"MS.MS.count":1,"MS.MS.scan.number":11463,"Score":66.36,"Delta.score":63.783,"Combinatorics":2,"Intensity":115620000,"Reverse":"","Potential.contaminant":"","id":139,"Protein.group.IDs":"516","Peptide.ID":5,"Mod..peptide.ID":6,"MS.MS.IDs":"140","Best.MS.MS":140,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"946;947"}
{"Sequence":"AAADALSDLEIKDSK","Length":15,"Modifications":"Phospho (STY)","Modified.sequence":"_AAADALSDLEIKDS(Phospho (STY))K_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAADALS(0.002)DLEIKDS(0.998)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAADALS(-26)DLEIKDS(26)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_03","Experiment":"Yonly_ind_03","MS.MS.m.z":813.88739,"Charge":2,"m.z":813.88475,"Mass":1625.75495,"Uncalibrated...Calibrated.m.z..ppm.":3.203,"Uncalibrated...Calibrated.m.z..Da.":0.00261,"Mass.error..ppm.":0.07023,"Mass.error..Da.":0.00006,"Uncalibrated.mass.error..ppm.":3.2733,"Uncalibrated.mass.error..Da.":0.00266,"Max.intensity.m.z.0":813.88486,"Retention.time":11.978,"Retention.length":0.1629,"Calibrated.retention.time":11.978,"Calibrated.retention.time.start":11.902,"Calibrated.retention.time.finish":12.065,"Retention.time.calibration":0,"Number.of.data.points":45,"Number.of.scans":15,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":6.8043e-15,"MS.MS.count":1,"MS.MS.scan.number":11478,"Score":119.79,"Delta.score":117.46,"Combinatorics":2,"Intensity":66357000,"Reverse":"","Potential.contaminant":"","id":140,"Protein.group.IDs":"516","Peptide.ID":5,"Mod..peptide.ID":6,"MS.MS.IDs":"141","Best.MS.MS":141,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"946;947"}
{"Sequence":"AAADALSDLEIKDSK","Length":15,"Modifications":"2 Phospho (STY)","Modified.sequence":"_AAADALS(Phospho (STY))DLEIKDS(Phospho (STY))K_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAADALS(1)DLEIKDS(1)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAADALS(43)DLEIKDS(43)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_06","Experiment":"H100_Y200_06","MS.MS.m.z":853.87415,"Charge":2,"m.z":853.86792,"Mass":1705.72128,"Uncalibrated...Calibrated.m.z..ppm.":5.139,"Uncalibrated...Calibrated.m.z..Da.":0.00439,"Mass.error..ppm.":-0.24899,"Mass.error..Da.":-0.00021,"Uncalibrated.mass.error..ppm.":4.8901,"Uncalibrated.mass.error..Da.":0.00418,"Max.intensity.m.z.0":853.8685,"Retention.time":13.914,"Retention.length":0.173,"Calibrated.retention.time":13.914,"Calibrated.retention.time.start":13.842,"Calibrated.retention.time.finish":14.015,"Retention.time.calibration":0,"Number.of.data.points":46,"Number.of.scans":16,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00082,"MS.MS.count":1,"MS.MS.scan.number":13692,"Score":42.885,"Delta.score":35.081,"Combinatorics":1,"Intensity":21143000,"Reverse":"","Potential.contaminant":"","id":141,"Protein.group.IDs":"516","Peptide.ID":5,"Mod..peptide.ID":7,"MS.MS.IDs":"142","Best.MS.MS":142,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"946;947"}
{"Sequence":"AAADALSDLEIKDSK","Length":15,"Modifications":"2 Phospho (STY)","Modified.sequence":"_AAADALS(Phospho (STY))DLEIKDS(Phospho (STY))K_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAADALS(1)DLEIKDS(1)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAADALS(73)DLEIKDS(73)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":853.87109,"Charge":2,"m.z":853.86792,"Mass":1705.72128,"Uncalibrated...Calibrated.m.z..ppm.":1.9037,"Uncalibrated...Calibrated.m.z..Da.":0.00163,"Mass.error..ppm.":0.73271,"Mass.error..Da.":0.00063,"Uncalibrated.mass.error..ppm.":2.6364,"Uncalibrated.mass.error..Da.":0.00225,"Max.intensity.m.z.0":854.36974,"Retention.time":13.106,"Retention.length":0.17167,"Calibrated.retention.time":13.106,"Calibrated.retention.time.start":13.022,"Calibrated.retention.time.finish":13.194,"Retention.time.calibration":0,"Number.of.data.points":40,"Number.of.scans":16,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":7.9392e-08,"MS.MS.count":1,"MS.MS.scan.number":13037,"Score":72.569,"Delta.score":64.765,"Combinatorics":1,"Intensity":24571000,"Reverse":"","Potential.contaminant":"","id":142,"Protein.group.IDs":"516","Peptide.ID":5,"Mod..peptide.ID":7,"MS.MS.IDs":"143","Best.MS.MS":143,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"946;947"}
{"Sequence":"AAADALSDLEIKDSK","Length":15,"Modifications":"2 Phospho (STY)","Modified.sequence":"_AAADALS(Phospho (STY))DLEIKDS(Phospho (STY))K_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAADALS(1)DLEIKDS(1)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAADALS(81)DLEIKDS(81)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":853.86993,"Charge":2,"m.z":853.86792,"Mass":1705.72128,"Uncalibrated...Calibrated.m.z..ppm.":1.5447,"Uncalibrated...Calibrated.m.z..Da.":0.00132,"Mass.error..ppm.":1.4241,"Mass.error..Da.":0.00122,"Uncalibrated.mass.error..ppm.":2.9688,"Uncalibrated.mass.error..Da.":0.00254,"Max.intensity.m.z.0":853.86994,"Retention.time":13.123,"Retention.length":0.1409,"Calibrated.retention.time":13.123,"Calibrated.retention.time.start":13.074,"Calibrated.retention.time.finish":13.215,"Retention.time.calibration":0,"Number.of.data.points":31,"Number.of.scans":13,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.716e-09,"MS.MS.count":1,"MS.MS.scan.number":13102,"Score":81.315,"Delta.score":73.512,"Combinatorics":1,"Intensity":27768000,"Reverse":"","Potential.contaminant":"","id":143,"Protein.group.IDs":"516","Peptide.ID":5,"Mod..peptide.ID":7,"MS.MS.IDs":"144","Best.MS.MS":144,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"946;947"}
{"Sequence":"AAADALSDLEIKDSK","Length":15,"Modifications":"2 Phospho (STY)","Modified.sequence":"_AAADALS(Phospho (STY))DLEIKDS(Phospho (STY))K_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAADALS(1)DLEIKDS(1)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAADALS(89)DLEIKDS(89)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_03","Experiment":"Yonly_ind_03","MS.MS.m.z":853.87378,"Charge":2,"m.z":853.86792,"Mass":1705.72128,"Uncalibrated...Calibrated.m.z..ppm.":2.8812,"Uncalibrated...Calibrated.m.z..Da.":0.00246,"Mass.error..ppm.":0.23937,"Mass.error..Da.":0.0002,"Uncalibrated.mass.error..ppm.":3.1205,"Uncalibrated.mass.error..Da.":0.00266,"Max.intensity.m.z.0":853.8694,"Retention.time":13.142,"Retention.length":0.25546,"Calibrated.retention.time":13.142,"Calibrated.retention.time.start":12.949,"Calibrated.retention.time.finish":13.205,"Retention.time.calibration":0,"Number.of.data.points":51,"Number.of.scans":24,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.0118e-11,"MS.MS.count":1,"MS.MS.scan.number":12975,"Score":88.573,"Delta.score":80.769,"Combinatorics":1,"Intensity":28308000,"Reverse":"","Potential.contaminant":"","id":144,"Protein.group.IDs":"516","Peptide.ID":5,"Mod..peptide.ID":7,"MS.MS.IDs":"145","Best.MS.MS":145,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"946;947"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAET(Phospho (STY))QSLREQPEM(Oxidation (M))EDANSEK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.343)QS(0.329)LREQPEMEDANS(0.329)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(44)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(0.18)QS(-0.18)LREQPEMEDANS(-0.18)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_02","Experiment":"H100_Y25_02","MS.MS.m.z":825.01709,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.9699,"Uncalibrated...Calibrated.m.z..Da.":0.00327,"Mass.error..ppm.":1.1755,"Mass.error..Da.":0.00097,"Uncalibrated.mass.error..ppm.":5.1453,"Uncalibrated.mass.error..Da.":0.00424,"Max.intensity.m.z.0":825.01365,"Retention.time":8.9805,"Retention.length":0.20195,"Calibrated.retention.time":8.9805,"Calibrated.retention.time.start":8.8391,"Calibrated.retention.time.finish":9.0411,"Retention.time.calibration":0,"Number.of.data.points":50,"Number.of.scans":19,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":4.0238e-06,"MS.MS.count":1,"MS.MS.scan.number":7623,"Score":43.964,"Delta.score":35.9,"Combinatorics":3,"Intensity":17889000,"Reverse":"","Potential.contaminant":"","id":145,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"146","Best.MS.MS":146,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.133)QS(0.127)LREQPEMEDANS(0.74)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(51)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-7.5)QS(-7.6)LREQPEMEDANS(7.5)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_03","Experiment":"H100_Y25_03","MS.MS.m.z":825.0191,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":5.2758,"Uncalibrated...Calibrated.m.z..Da.":0.00435,"Mass.error..ppm.":0.17675,"Mass.error..Da.":0.00015,"Uncalibrated.mass.error..ppm.":5.4526,"Uncalibrated.mass.error..Da.":0.0045,"Max.intensity.m.z.0":825.0137,"Retention.time":8.9834,"Retention.length":0.13201,"Calibrated.retention.time":8.9834,"Calibrated.retention.time.start":8.9198,"Calibrated.retention.time.finish":9.0518,"Retention.time.calibration":0,"Number.of.data.points":45,"Number.of.scans":12,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.2154e-07,"MS.MS.count":1,"MS.MS.scan.number":7628,"Score":51.418,"Delta.score":48.936,"Combinatorics":3,"Intensity":21344000,"Reverse":"","Potential.contaminant":"","id":146,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"147","Best.MS.MS":147,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.142)QS(0.137)LREQPEMEDANS(0.721)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(44)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-7.1)QS(-7.2)LREQPEMEDANS(7.1)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_04","Experiment":"H100_Y25_04","MS.MS.m.z":825.01709,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.8835,"Uncalibrated...Calibrated.m.z..Da.":0.00403,"Mass.error..ppm.":0.04226,"Mass.error..Da.":0.00003,"Uncalibrated.mass.error..ppm.":4.9258,"Uncalibrated.mass.error..Da.":0.00406,"Max.intensity.m.z.0":825.01296,"Retention.time":9.0254,"Retention.length":0.15232,"Calibrated.retention.time":9.0254,"Calibrated.retention.time.start":8.9694,"Calibrated.retention.time.finish":9.1217,"Retention.time.calibration":0,"Number.of.data.points":44,"Number.of.scans":14,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.7564e-06,"MS.MS.count":1,"MS.MS.scan.number":7672,"Score":43.781,"Delta.score":41.299,"Combinatorics":3,"Intensity":29487000,"Reverse":"","Potential.contaminant":"","id":147,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"148","Best.MS.MS":148,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.005)QS(0.051)LREQPEMEDANS(0.944)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(55)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-22)QS(-13)LREQPEMEDANS(13)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_05","Experiment":"H100_Y25_05","MS.MS.m.z":825.01715,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.9492,"Uncalibrated...Calibrated.m.z..Da.":0.00408,"Mass.error..ppm.":-0.3391,"Mass.error..Da.":-0.00028,"Uncalibrated.mass.error..ppm.":4.6101,"Uncalibrated.mass.error..Da.":0.0038,"Max.intensity.m.z.0":825.01337,"Retention.time":9.0357,"Retention.length":0.13187,"Calibrated.retention.time":9.0357,"Calibrated.retention.time.start":8.9795,"Calibrated.retention.time.finish":9.1113,"Retention.time.calibration":0,"Number.of.data.points":48,"Number.of.scans":12,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.7931e-07,"MS.MS.count":1,"MS.MS.scan.number":7677,"Score":54.666,"Delta.score":52.184,"Combinatorics":3,"Intensity":28919000,"Reverse":"","Potential.contaminant":"","id":148,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"149","Best.MS.MS":149,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.056)QS(0.188)LREQPEMEDANS(0.756)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(48)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-11)QS(-6)LREQPEMEDANS(6)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_06","Experiment":"H100_Y25_06","MS.MS.m.z":825.01764,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":5.1317,"Uncalibrated...Calibrated.m.z..Da.":0.00423,"Mass.error..ppm.":-0.44859,"Mass.error..Da.":-0.00037,"Uncalibrated.mass.error..ppm.":4.6831,"Uncalibrated.mass.error..Da.":0.00386,"Max.intensity.m.z.0":825.01288,"Retention.time":9.5692,"Retention.length":0.12079,"Calibrated.retention.time":9.5692,"Calibrated.retention.time.start":9.5064,"Calibrated.retention.time.finish":9.6272,"Retention.time.calibration":0,"Number.of.data.points":50,"Number.of.scans":11,"Number.of.isotopic.peaks":6,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":6.454e-07,"MS.MS.count":1,"MS.MS.scan.number":8097,"Score":48.025,"Delta.score":45.543,"Combinatorics":3,"Intensity":40956000,"Reverse":"","Potential.contaminant":"","id":149,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"150","Best.MS.MS":150,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.133)QS(0.127)LREQPEMEDANS(0.74)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(51)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-7.5)QS(-7.6)LREQPEMEDANS(7.5)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_01","Experiment":"H100_Y50_01","MS.MS.m.z":825.35083,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.3183,"Uncalibrated...Calibrated.m.z..Da.":0.00356,"Mass.error..ppm.":-0.65236,"Mass.error..Da.":-0.00054,"Uncalibrated.mass.error..ppm.":3.666,"Uncalibrated.mass.error..Da.":0.00302,"Max.intensity.m.z.0":825.01302,"Retention.time":8.92,"Retention.length":0.13103,"Calibrated.retention.time":8.92,"Calibrated.retention.time.start":8.8558,"Calibrated.retention.time.finish":8.9868,"Retention.time.calibration":0,"Number.of.data.points":34,"Number.of.scans":12,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.0649e-06,"MS.MS.count":1,"MS.MS.scan.number":7539,"Score":51.418,"Delta.score":48.936,"Combinatorics":3,"Intensity":13025000,"Reverse":"","Potential.contaminant":"","id":150,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"151","Best.MS.MS":151,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.073)QS(0.07)LREQPEMEDANS(0.857)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(55)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-11)QS(-11)LREQPEMEDANS(11)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_02","Experiment":"H100_Y50_02","MS.MS.m.z":825.01691,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.0068,"Uncalibrated...Calibrated.m.z..Da.":0.0033,"Mass.error..ppm.":1.0976,"Mass.error..Da.":0.00091,"Uncalibrated.mass.error..ppm.":5.1044,"Uncalibrated.mass.error..Da.":0.00421,"Max.intensity.m.z.0":825.01334,"Retention.time":8.8898,"Retention.length":0.1717,"Calibrated.retention.time":8.8898,"Calibrated.retention.time.start":8.781,"Calibrated.retention.time.finish":8.9527,"Retention.time.calibration":0,"Number.of.data.points":50,"Number.of.scans":16,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.9152e-07,"MS.MS.count":1,"MS.MS.scan.number":7514,"Score":54.666,"Delta.score":52.184,"Combinatorics":3,"Intensity":20069000,"Reverse":"","Potential.contaminant":"","id":151,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"152","Best.MS.MS":152,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.005)QS(0.005)LREQPEMEDANS(0.989)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(67)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-23)QS(-23)LREQPEMEDANS(23)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_03","Experiment":"H100_Y50_03","MS.MS.m.z":825.01544,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":5.0174,"Uncalibrated...Calibrated.m.z..Da.":0.00414,"Mass.error..ppm.":-0.45786,"Mass.error..Da.":-0.00038,"Uncalibrated.mass.error..ppm.":4.5596,"Uncalibrated.mass.error..Da.":0.00376,"Max.intensity.m.z.0":825.01293,"Retention.time":8.9651,"Retention.length":0.10098,"Calibrated.retention.time":8.9651,"Calibrated.retention.time.start":8.9198,"Calibrated.retention.time.finish":9.0208,"Retention.time.calibration":0,"Number.of.data.points":36,"Number.of.scans":9,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":5.2493e-10,"MS.MS.count":1,"MS.MS.scan.number":7597,"Score":66.519,"Delta.score":64.037,"Combinatorics":3,"Intensity":29614000,"Reverse":"","Potential.contaminant":"","id":152,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"153","Best.MS.MS":153,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.142)QS(0.137)LREQPEMEDANS(0.721)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(44)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-7.1)QS(-7.2)LREQPEMEDANS(7.1)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_04","Experiment":"H100_Y50_04","MS.MS.m.z":825.01642,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.6442,"Uncalibrated...Calibrated.m.z..Da.":0.00383,"Mass.error..ppm.":-0.61892,"Mass.error..Da.":-0.00051,"Uncalibrated.mass.error..ppm.":4.0253,"Uncalibrated.mass.error..Da.":0.00332,"Max.intensity.m.z.0":825.01327,"Retention.time":8.9796,"Retention.length":0.10098,"Calibrated.retention.time":8.9796,"Calibrated.retention.time.start":8.9299,"Calibrated.retention.time.finish":9.0309,"Retention.time.calibration":0,"Number.of.data.points":16,"Number.of.scans":9,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.2193e-06,"MS.MS.count":1,"MS.MS.scan.number":7609,"Score":43.781,"Delta.score":39.746,"Combinatorics":3,"Intensity":27008000,"Reverse":"","Potential.contaminant":"","id":153,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"154","Best.MS.MS":154,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.025)QS(0.047)LREQPEMEDANS(0.928)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(61)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-16)QS(-13)LREQPEMEDANS(13)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_05","Experiment":"H100_Y50_05","MS.MS.m.z":825.01813,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.6686,"Uncalibrated...Calibrated.m.z..Da.":0.00385,"Mass.error..ppm.":-0.17733,"Mass.error..Da.":-0.00015,"Uncalibrated.mass.error..ppm.":4.4913,"Uncalibrated.mass.error..Da.":0.0037,"Max.intensity.m.z.0":825.01357,"Retention.time":8.9925,"Retention.length":0.10094,"Calibrated.retention.time":8.9925,"Calibrated.retention.time.start":8.9298,"Calibrated.retention.time.finish":9.0308,"Retention.time.calibration":0,"Number.of.data.points":41,"Number.of.scans":9,"Number.of.isotopic.peaks":6,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.8639e-08,"MS.MS.count":1,"MS.MS.scan.number":7634,"Score":60.959,"Delta.score":58.477,"Combinatorics":3,"Intensity":26954000,"Reverse":"","Potential.contaminant":"","id":154,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"155","Best.MS.MS":155,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.142)QS(0.137)LREQPEMEDANS(0.721)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(44)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-7.1)QS(-7.2)LREQPEMEDANS(7.1)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_06","Experiment":"H100_Y50_06","MS.MS.m.z":825.01788,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.9321,"Uncalibrated...Calibrated.m.z..Da.":0.00407,"Mass.error..ppm.":0.18791,"Mass.error..Da.":0.00015,"Uncalibrated.mass.error..ppm.":5.12,"Uncalibrated.mass.error..Da.":0.00422,"Max.intensity.m.z.0":825.01324,"Retention.time":9.5633,"Retention.length":0.1511,"Calibrated.retention.time":9.5633,"Calibrated.retention.time.start":9.475,"Calibrated.retention.time.finish":9.6261,"Retention.time.calibration":0,"Number.of.data.points":49,"Number.of.scans":14,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":5.704e-06,"MS.MS.count":1,"MS.MS.scan.number":8077,"Score":43.781,"Delta.score":38.691,"Combinatorics":3,"Intensity":35854000,"Reverse":"","Potential.contaminant":"","id":155,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"156","Best.MS.MS":156,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.095)QS(0.091)LREQPEMEDANS(0.815)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(61)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-9.3)QS(-9.5)LREQPEMEDANS(9.3)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_01","Experiment":"H100_Y100_01","MS.MS.m.z":825.01886,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.1935,"Uncalibrated...Calibrated.m.z..Da.":0.00346,"Mass.error..ppm.":-0.33036,"Mass.error..Da.":-0.00027,"Uncalibrated.mass.error..ppm.":3.8631,"Uncalibrated.mass.error..Da.":0.00319,"Max.intensity.m.z.0":825.01393,"Retention.time":8.904,"Retention.length":0.11079,"Calibrated.retention.time":8.904,"Calibrated.retention.time.start":8.856,"Calibrated.retention.time.finish":8.9668,"Retention.time.calibration":0,"Number.of.data.points":31,"Number.of.scans":10,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.3993e-10,"MS.MS.count":1,"MS.MS.scan.number":7546,"Score":60.959,"Delta.score":56.806,"Combinatorics":3,"Intensity":20401000,"Reverse":"","Potential.contaminant":"","id":156,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"157","Best.MS.MS":157,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.265)QS(0.117)LREQPEMEDANS(0.617)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(44)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-3.7)QS(-7.2)LREQPEMEDANS(3.7)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_02","Experiment":"H100_Y100_02","MS.MS.m.z":825.01648,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.2821,"Uncalibrated...Calibrated.m.z..Da.":0.00353,"Mass.error..ppm.":-0.88701,"Mass.error..Da.":-0.00073,"Uncalibrated.mass.error..ppm.":3.3951,"Uncalibrated.mass.error..Da.":0.0028,"Max.intensity.m.z.0":824.67853,"Retention.time":8.9735,"Retention.length":0.10084,"Calibrated.retention.time":8.9735,"Calibrated.retention.time.start":8.9151,"Calibrated.retention.time.finish":9.016,"Retention.time.calibration":0,"Number.of.data.points":36,"Number.of.scans":9,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.6348e-06,"MS.MS.count":1,"MS.MS.scan.number":7615,"Score":43.781,"Delta.score":41.299,"Combinatorics":3,"Intensity":22634000,"Reverse":"","Potential.contaminant":"","id":157,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"158","Best.MS.MS":158,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.095)QS(0.091)LREQPEMEDANS(0.815)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(61)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-9.3)QS(-9.5)LREQPEMEDANS(9.3)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_03","Experiment":"H100_Y100_03","MS.MS.m.z":825.0163,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.326,"Uncalibrated...Calibrated.m.z..Da.":0.00357,"Mass.error..ppm.":0.68339,"Mass.error..Da.":0.00056,"Uncalibrated.mass.error..ppm.":5.0094,"Uncalibrated.mass.error..Da.":0.00413,"Max.intensity.m.z.0":825.01323,"Retention.time":8.9446,"Retention.length":0.15078,"Calibrated.retention.time":8.9446,"Calibrated.retention.time.start":8.8437,"Calibrated.retention.time.finish":8.9945,"Retention.time.calibration":0,"Number.of.data.points":40,"Number.of.scans":14,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.4873e-08,"MS.MS.count":1,"MS.MS.scan.number":7581,"Score":60.959,"Delta.score":56.515,"Combinatorics":3,"Intensity":23728000,"Reverse":"","Potential.contaminant":"","id":158,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"159","Best.MS.MS":159,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.001)QS(0.01)LREQPEMEDANS(0.989)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(68)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-31)QS(-20)LREQPEMEDANS(20)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_04","Experiment":"H100_Y100_04","MS.MS.m.z":824.68243,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.9846,"Uncalibrated...Calibrated.m.z..Da.":0.00329,"Mass.error..ppm.":-0.23156,"Mass.error..Da.":-0.00019,"Uncalibrated.mass.error..ppm.":3.753,"Uncalibrated.mass.error..Da.":0.0031,"Max.intensity.m.z.0":825.34775,"Retention.time":8.9648,"Retention.length":0.1107,"Calibrated.retention.time":8.9648,"Calibrated.retention.time.start":8.8947,"Calibrated.retention.time.finish":9.0054,"Retention.time.calibration":0,"Number.of.data.points":33,"Number.of.scans":10,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":5.8735e-10,"MS.MS.count":1,"MS.MS.scan.number":7605,"Score":67.828,"Delta.score":64.292,"Combinatorics":3,"Intensity":30163000,"Reverse":"","Potential.contaminant":"","id":159,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"160","Best.MS.MS":160,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAET(Phospho (STY))QSLREQPEM(Oxidation (M))EDANSEK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.344)QS(0.328)LREQPEMEDANS(0.328)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(52)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(0.2)QS(-0.2)LREQPEMEDANS(-0.2)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_01","Experiment":"H100_Y150_01","MS.MS.m.z":825.01587,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.5454,"Uncalibrated...Calibrated.m.z..Da.":0.00292,"Mass.error..ppm.":-0.47245,"Mass.error..Da.":-0.00039,"Uncalibrated.mass.error..ppm.":3.073,"Uncalibrated.mass.error..Da.":0.00253,"Max.intensity.m.z.0":825.01353,"Retention.time":8.9316,"Retention.length":0.09028,"Calibrated.retention.time":8.9316,"Calibrated.retention.time.start":8.8812,"Calibrated.retention.time.finish":8.9715,"Retention.time.calibration":0,"Number.of.data.points":15,"Number.of.scans":8,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.7623e-07,"MS.MS.count":1,"MS.MS.scan.number":7584,"Score":51.623,"Delta.score":49.141,"Combinatorics":3,"Intensity":22989000,"Reverse":"","Potential.contaminant":"","id":160,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"161","Best.MS.MS":161,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.002)QS(0.02)LREQPEMEDANS(0.978)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(65)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-28)QS(-17)LREQPEMEDANS(17)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_02","Experiment":"H100_Y150_02","MS.MS.m.z":825.01617,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.837,"Uncalibrated...Calibrated.m.z..Da.":0.00316,"Mass.error..ppm.":-1.0965,"Mass.error..Da.":-0.0009,"Uncalibrated.mass.error..ppm.":2.7405,"Uncalibrated.mass.error..Da.":0.00226,"Max.intensity.m.z.0":825.01253,"Retention.time":8.9521,"Retention.length":0.10071,"Calibrated.retention.time":8.9521,"Calibrated.retention.time.start":8.9016,"Calibrated.retention.time.finish":9.0023,"Retention.time.calibration":0,"Number.of.data.points":34,"Number.of.scans":9,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":9.4385e-08,"MS.MS.count":1,"MS.MS.scan.number":7595,"Score":64.84,"Delta.score":62.358,"Combinatorics":3,"Intensity":24221000,"Reverse":"","Potential.contaminant":"","id":161,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"162","Best.MS.MS":162,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.027)QS(0.026)LREQPEMEDANS(0.947)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(59)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-15)QS(-16)LREQPEMEDANS(15)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_03","Experiment":"H100_Y150_03","MS.MS.m.z":825.01581,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.9284,"Uncalibrated...Calibrated.m.z..Da.":0.00324,"Mass.error..ppm.":-0.63324,"Mass.error..Da.":-0.00052,"Uncalibrated.mass.error..ppm.":3.2951,"Uncalibrated.mass.error..Da.":0.00272,"Max.intensity.m.z.0":825.01277,"Retention.time":8.9357,"Retention.length":0.12038,"Calibrated.retention.time":8.9357,"Calibrated.retention.time.start":8.8766,"Calibrated.retention.time.finish":8.997,"Retention.time.calibration":0,"Number.of.data.points":35,"Number.of.scans":11,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.575e-07,"MS.MS.count":1,"MS.MS.scan.number":7560,"Score":59.443,"Delta.score":56.929,"Combinatorics":3,"Intensity":27190000,"Reverse":"","Potential.contaminant":"","id":162,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"163","Best.MS.MS":163,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.005)QS(0.004)LREQPEMEDANS(0.991)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(75)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-23)QS(-24)LREQPEMEDANS(23)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_04","Experiment":"H100_Y150_04","MS.MS.m.z":825.01721,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.4591,"Uncalibrated...Calibrated.m.z..Da.":0.00368,"Mass.error..ppm.":-0.3639,"Mass.error..Da.":-0.0003,"Uncalibrated.mass.error..ppm.":4.0952,"Uncalibrated.mass.error..Da.":0.00338,"Max.intensity.m.z.0":824.67868,"Retention.time":8.9802,"Retention.length":0.1107,"Calibrated.retention.time":8.9802,"Calibrated.retention.time.start":8.9167,"Calibrated.retention.time.finish":9.0274,"Retention.time.calibration":0,"Number.of.data.points":38,"Number.of.scans":10,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.8286e-13,"MS.MS.count":1,"MS.MS.scan.number":7631,"Score":74.949,"Delta.score":72.467,"Combinatorics":3,"Intensity":27637000,"Reverse":"","Potential.contaminant":"","id":163,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"164","Best.MS.MS":164,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.016)QS(0.054)LREQPEMEDANS(0.93)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(54)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-18)QS(-12)LREQPEMEDANS(12)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_05","Experiment":"H100_Y150_05","MS.MS.m.z":824.6825,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.991,"Uncalibrated...Calibrated.m.z..Da.":0.00412,"Mass.error..ppm.":-0.70976,"Mass.error..Da.":-0.00059,"Uncalibrated.mass.error..ppm.":4.2812,"Uncalibrated.mass.error..Da.":0.00353,"Max.intensity.m.z.0":825.01325,"Retention.time":9.5092,"Retention.length":0.11002,"Calibrated.retention.time":9.5092,"Calibrated.retention.time.start":9.448,"Calibrated.retention.time.finish":9.558,"Retention.time.calibration":0,"Number.of.data.points":35,"Number.of.scans":10,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":5.822e-08,"MS.MS.count":1,"MS.MS.scan.number":8060,"Score":54.353,"Delta.score":49.909,"Combinatorics":3,"Intensity":35198000,"Reverse":"","Potential.contaminant":"","id":164,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"165","Best.MS.MS":165,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.016)QS(0.015)LREQPEMEDANS(0.969)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(55)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-18)QS(-18)LREQPEMEDANS(18)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_06","Experiment":"H100_Y150_06","MS.MS.m.z":825.0174,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.8849,"Uncalibrated...Calibrated.m.z..Da.":0.0032,"Mass.error..ppm.":-0.13233,"Mass.error..Da.":-0.00011,"Uncalibrated.mass.error..ppm.":3.7525,"Uncalibrated.mass.error..Da.":0.00309,"Max.intensity.m.z.0":825.01289,"Retention.time":9.555,"Retention.length":0.10032,"Calibrated.retention.time":9.555,"Calibrated.retention.time.start":9.4946,"Calibrated.retention.time.finish":9.5949,"Retention.time.calibration":0,"Number.of.data.points":31,"Number.of.scans":9,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":5.3365e-08,"MS.MS.count":1,"MS.MS.scan.number":8039,"Score":54.666,"Delta.score":50.222,"Combinatorics":3,"Intensity":39935000,"Reverse":"","Potential.contaminant":"","id":165,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"166","Best.MS.MS":166,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.304)QS(0.288)LREQPEMEDANS(0.408)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(61)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-1.3)QS(-1.5)LREQPEMEDANS(1.3)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_01","Experiment":"H100_Y200_01","MS.MS.m.z":825.01672,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.5396,"Uncalibrated...Calibrated.m.z..Da.":0.00292,"Mass.error..ppm.":-0.50511,"Mass.error..Da.":-0.00042,"Uncalibrated.mass.error..ppm.":3.0345,"Uncalibrated.mass.error..Da.":0.0025,"Max.intensity.m.z.0":825.01265,"Retention.time":8.9124,"Retention.length":0.09035,"Calibrated.retention.time":8.9124,"Calibrated.retention.time.start":8.8691,"Calibrated.retention.time.finish":8.9594,"Retention.time.calibration":0,"Number.of.data.points":31,"Number.of.scans":8,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.4638e-08,"MS.MS.count":1,"MS.MS.scan.number":7571,"Score":60.959,"Delta.score":58.102,"Combinatorics":3,"Intensity":23374000,"Reverse":"","Potential.contaminant":"","id":166,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"167","Best.MS.MS":167,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.001)QS(0.011)LREQPEMEDANS(0.988)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(86)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-31)QS(-19)LREQPEMEDANS(19)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_02","Experiment":"H100_Y200_02","MS.MS.m.z":825.01544,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.9117,"Uncalibrated...Calibrated.m.z..Da.":0.00323,"Mass.error..ppm.":0.21454,"Mass.error..Da.":0.00018,"Uncalibrated.mass.error..ppm.":4.1263,"Uncalibrated.mass.error..Da.":0.0034,"Max.intensity.m.z.0":825.01298,"Retention.time":8.9571,"Retention.length":0.15023,"Calibrated.retention.time":8.9571,"Calibrated.retention.time.start":8.8587,"Calibrated.retention.time.finish":9.0089,"Retention.time.calibration":0,"Number.of.data.points":34,"Number.of.scans":14,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.8999e-18,"MS.MS.count":1,"MS.MS.scan.number":7629,"Score":85.864,"Delta.score":83.382,"Combinatorics":3,"Intensity":29898000,"Reverse":"","Potential.contaminant":"","id":167,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"168","Best.MS.MS":168,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.028)QS(0.143)LREQPEMEDANS(0.829)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(51)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-15)QS(-7.6)LREQPEMEDANS(7.6)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_03","Experiment":"H100_Y200_03","MS.MS.m.z":825.01575,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.7678,"Uncalibrated...Calibrated.m.z..Da.":0.00311,"Mass.error..ppm.":-0.19267,"Mass.error..Da.":-0.00016,"Uncalibrated.mass.error..ppm.":3.5752,"Uncalibrated.mass.error..Da.":0.00295,"Max.intensity.m.z.0":825.01306,"Retention.time":8.9274,"Retention.length":0.09008,"Calibrated.retention.time":8.9274,"Calibrated.retention.time.start":8.8765,"Calibrated.retention.time.finish":8.9666,"Retention.time.calibration":0,"Number.of.data.points":30,"Number.of.scans":8,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":5.0454e-06,"MS.MS.count":1,"MS.MS.scan.number":7584,"Score":51.418,"Delta.score":48.936,"Combinatorics":3,"Intensity":31108000,"Reverse":"","Potential.contaminant":"","id":168,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"169","Best.MS.MS":169,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.029)QS(0.028)LREQPEMEDANS(0.943)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(49)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-15)QS(-15)LREQPEMEDANS(15)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_04","Experiment":"H100_Y200_04","MS.MS.m.z":824.68201,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.83,"Uncalibrated...Calibrated.m.z..Da.":0.00316,"Mass.error..ppm.":-0.40053,"Mass.error..Da.":-0.00033,"Uncalibrated.mass.error..ppm.":3.4294,"Uncalibrated.mass.error..Da.":0.00283,"Max.intensity.m.z.0":824.67843,"Retention.time":8.9595,"Retention.length":0.10033,"Calibrated.retention.time":8.9595,"Calibrated.retention.time.start":8.9031,"Calibrated.retention.time.finish":9.0034,"Retention.time.calibration":0,"Number.of.data.points":30,"Number.of.scans":9,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.5341e-07,"MS.MS.count":1,"MS.MS.scan.number":7632,"Score":49.077,"Delta.score":46.595,"Combinatorics":3,"Intensity":32831000,"Reverse":"","Potential.contaminant":"","id":169,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"170","Best.MS.MS":170,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.071)QS(0.068)LREQPEMEDANS(0.861)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(55)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-11)QS(-11)LREQPEMEDANS(11)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_05","Experiment":"H100_Y200_05","MS.MS.m.z":825.01733,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.45,"Uncalibrated...Calibrated.m.z..Da.":0.00367,"Mass.error..ppm.":-0.11905,"Mass.error..Da.":-0.0001,"Uncalibrated.mass.error..ppm.":4.331,"Uncalibrated.mass.error..Da.":0.00357,"Max.intensity.m.z.0":825.01333,"Retention.time":9.5189,"Retention.length":0.09985,"Calibrated.retention.time":9.5189,"Calibrated.retention.time.start":9.4644,"Calibrated.retention.time.finish":9.5643,"Retention.time.calibration":0,"Number.of.data.points":37,"Number.of.scans":9,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.1491e-10,"MS.MS.count":1,"MS.MS.scan.number":8080,"Score":54.804,"Delta.score":51.947,"Combinatorics":3,"Intensity":43911000,"Reverse":"","Potential.contaminant":"","id":170,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"171","Best.MS.MS":171,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.005)QS(0.004)LREQPEMEDANS(0.991)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(54)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-23)QS(-23)LREQPEMEDANS(23)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_06","Experiment":"H100_Y200_06","MS.MS.m.z":824.6828,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.8164,"Uncalibrated...Calibrated.m.z..Da.":0.00315,"Mass.error..ppm.":-0.34941,"Mass.error..Da.":-0.00029,"Uncalibrated.mass.error..ppm.":3.467,"Uncalibrated.mass.error..Da.":0.00286,"Max.intensity.m.z.0":825.0128,"Retention.time":9.5174,"Retention.length":0.09995,"Calibrated.retention.time":9.5174,"Calibrated.retention.time.start":9.4621,"Calibrated.retention.time.finish":9.5621,"Retention.time.calibration":0,"Number.of.data.points":39,"Number.of.scans":9,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":6.8459e-08,"MS.MS.count":1,"MS.MS.scan.number":8037,"Score":54.353,"Delta.score":51.871,"Combinatorics":3,"Intensity":61506000,"Reverse":"","Potential.contaminant":"","id":171,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"172","Best.MS.MS":172,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.019)QS(0.018)LREQPEMEDANS(0.962)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(61)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-17)QS(-17)LREQPEMEDANS(17)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_01","Experiment":"Honly_ind_01","MS.MS.m.z":825.01556,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":4.2491,"Uncalibrated...Calibrated.m.z..Da.":0.0035,"Mass.error..ppm.":-0.62111,"Mass.error..Da.":-0.00051,"Uncalibrated.mass.error..ppm.":3.628,"Uncalibrated.mass.error..Da.":0.00299,"Max.intensity.m.z.0":825.01277,"Retention.time":8.7268,"Retention.length":0.1724,"Calibrated.retention.time":8.7268,"Calibrated.retention.time.start":8.6601,"Calibrated.retention.time.finish":8.8325,"Retention.time.calibration":0,"Number.of.data.points":57,"Number.of.scans":16,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.3993e-10,"MS.MS.count":1,"MS.MS.scan.number":7313,"Score":60.959,"Delta.score":58.477,"Combinatorics":3,"Intensity":25209000,"Reverse":"","Potential.contaminant":"","id":172,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"173","Best.MS.MS":173,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.027)QS(0.026)LREQPEMEDANS(0.947)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(59)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-15)QS(-16)LREQPEMEDANS(15)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_02","Experiment":"Honly_ind_02","MS.MS.m.z":825.01642,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":3.2389,"Uncalibrated...Calibrated.m.z..Da.":0.00267,"Mass.error..ppm.":-0.08189,"Mass.error..Da.":-0.00007,"Uncalibrated.mass.error..ppm.":3.157,"Uncalibrated.mass.error..Da.":0.0026,"Max.intensity.m.z.0":825.01328,"Retention.time":8.7372,"Retention.length":0.13209,"Calibrated.retention.time":8.7372,"Calibrated.retention.time.start":8.6745,"Calibrated.retention.time.finish":8.8066,"Retention.time.calibration":0,"Number.of.data.points":49,"Number.of.scans":12,"Number.of.isotopic.peaks":6,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.1285e-07,"MS.MS.count":1,"MS.MS.scan.number":7348,"Score":59.443,"Delta.score":52.008,"Combinatorics":3,"Intensity":32868000,"Reverse":"","Potential.contaminant":"","id":173,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"174","Best.MS.MS":174,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Oxidation (M),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEM(Oxidation (M))EDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"AAAETQSLREQPEM(1)EDANSEK","Phospho..STY..Probabilities":"AAAET(0.111)QS(0.105)LREQPEMEDANS(0.784)EK","Oxidation..M..Score.Diffs":"AAAETQSLREQPEM(77)EDANSEK","Phospho..STY..Score.Diffs":"AAAET(-8.5)QS(-8.7)LREQPEMEDANS(8.5)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_03","Experiment":"Honly_ind_03","MS.MS.m.z":825.0155,"Charge":3,"m.z":824.67926,"Mass":2471.01594,"Uncalibrated...Calibrated.m.z..ppm.":2.8821,"Uncalibrated...Calibrated.m.z..Da.":0.00238,"Mass.error..ppm.":0.82392,"Mass.error..Da.":0.00068,"Uncalibrated.mass.error..ppm.":3.706,"Uncalibrated.mass.error..Da.":0.00306,"Max.intensity.m.z.0":825.01336,"Retention.time":8.7352,"Retention.length":0.18217,"Calibrated.retention.time":8.7352,"Calibrated.retention.time.start":8.6139,"Calibrated.retention.time.finish":8.7961,"Retention.time.calibration":0,"Number.of.data.points":53,"Number.of.scans":17,"Number.of.isotopic.peaks":6,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.4152e-13,"MS.MS.count":1,"MS.MS.scan.number":7330,"Score":76.552,"Delta.score":71.685,"Combinatorics":3,"Intensity":52606000,"Reverse":"","Potential.contaminant":"","id":174,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":8,"MS.MS.IDs":"175","Best.MS.MS":175,"Oxidation..M..site.IDs":"833","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.005)QS(0.034)LREQPEMEDANS(0.961)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-23)QS(-14)LREQPEMEDANS(14)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_02","Experiment":"H100_Y25_02","MS.MS.m.z":819.68542,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.2221,"Uncalibrated...Calibrated.m.z..Da.":0.00346,"Mass.error..ppm.":-0.45939,"Mass.error..Da.":-0.00038,"Uncalibrated.mass.error..ppm.":3.7627,"Uncalibrated.mass.error..Da.":0.00308,"Max.intensity.m.z.0":819.68159,"Retention.time":10.29,"Retention.length":0.14312,"Calibrated.retention.time":10.29,"Calibrated.retention.time.start":10.227,"Calibrated.retention.time.finish":10.37,"Retention.time.calibration":0,"Number.of.data.points":51,"Number.of.scans":13,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.6965e-13,"MS.MS.count":1,"MS.MS.scan.number":9299,"Score":82.311,"Delta.score":74.908,"Combinatorics":3,"Intensity":26207000,"Reverse":"","Potential.contaminant":"","id":175,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"176","Best.MS.MS":176,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAET(Phospho (STY))QSLREQPEMEDANSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.531)QS(0.235)LREQPEMEDANS(0.235)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(3.5)QS(-3.5)LREQPEMEDANS(-3.5)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_03","Experiment":"H100_Y25_03","MS.MS.m.z":819.68457,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":5.1195,"Uncalibrated...Calibrated.m.z..Da.":0.00419,"Mass.error..ppm.":-0.28312,"Mass.error..Da.":-0.00023,"Uncalibrated.mass.error..ppm.":4.8364,"Uncalibrated.mass.error..Da.":0.00396,"Max.intensity.m.z.0":819.68147,"Retention.time":10.303,"Retention.length":0.16371,"Calibrated.retention.time":10.303,"Calibrated.retention.time.start":10.248,"Calibrated.retention.time.finish":10.411,"Retention.time.calibration":0,"Number.of.data.points":57,"Number.of.scans":15,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00003,"MS.MS.count":1,"MS.MS.scan.number":9318,"Score":40.112,"Delta.score":35.913,"Combinatorics":3,"Intensity":31770000,"Reverse":"","Potential.contaminant":"","id":176,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"177","Best.MS.MS":177,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.023)QS(0.022)LREQPEMEDANS(0.955)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-16)QS(-16)LREQPEMEDANS(16)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_04","Experiment":"H100_Y25_04","MS.MS.m.z":819.35022,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.4923,"Uncalibrated...Calibrated.m.z..Da.":0.00368,"Mass.error..ppm.":-0.31227,"Mass.error..Da.":-0.00026,"Uncalibrated.mass.error..ppm.":4.18,"Uncalibrated.mass.error..Da.":0.00342,"Max.intensity.m.z.0":819.68176,"Retention.time":10.297,"Retention.length":0.15315,"Calibrated.retention.time":10.297,"Calibrated.retention.time.start":10.237,"Calibrated.retention.time.finish":10.39,"Retention.time.calibration":0,"Number.of.data.points":46,"Number.of.scans":14,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.4088e-10,"MS.MS.count":1,"MS.MS.scan.number":9298,"Score":67.829,"Delta.score":60.425,"Combinatorics":3,"Intensity":25773000,"Reverse":"","Potential.contaminant":"","id":177,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"178","Best.MS.MS":178,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.023)QS(0.022)LREQPEMEDANS(0.955)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-16)QS(-16)LREQPEMEDANS(16)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_05","Experiment":"H100_Y25_05","MS.MS.m.z":819.35168,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.8463,"Uncalibrated...Calibrated.m.z..Da.":0.00397,"Mass.error..ppm.":-0.47991,"Mass.error..Da.":-0.00039,"Uncalibrated.mass.error..ppm.":4.3664,"Uncalibrated.mass.error..Da.":0.00358,"Max.intensity.m.z.0":819.68147,"Retention.time":10.328,"Retention.length":0.15315,"Calibrated.retention.time":10.328,"Calibrated.retention.time.start":10.246,"Calibrated.retention.time.finish":10.399,"Retention.time.calibration":0,"Number.of.data.points":44,"Number.of.scans":14,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.6996e-13,"MS.MS.count":1,"MS.MS.scan.number":9314,"Score":67.828,"Delta.score":60.425,"Combinatorics":3,"Intensity":29682000,"Reverse":"","Potential.contaminant":"","id":178,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"179","Best.MS.MS":179,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.301)QS(0.103)LREQPEMEDANS(0.596)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-3)QS(-7.6)LREQPEMEDANS(3)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_06","Experiment":"H100_Y25_06","MS.MS.m.z":819.6861,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":5.6056,"Uncalibrated...Calibrated.m.z..Da.":0.00459,"Mass.error..ppm.":-0.46181,"Mass.error..Da.":-0.00038,"Uncalibrated.mass.error..ppm.":5.1437,"Uncalibrated.mass.error..Da.":0.00421,"Max.intensity.m.z.0":819.68204,"Retention.time":10.979,"Retention.length":0.163,"Calibrated.retention.time":10.979,"Calibrated.retention.time.start":10.921,"Calibrated.retention.time.finish":11.084,"Retention.time.calibration":0,"Number.of.data.points":49,"Number.of.scans":15,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.113e-07,"MS.MS.count":1,"MS.MS.scan.number":9894,"Score":51.418,"Delta.score":47.219,"Combinatorics":3,"Intensity":17033000,"Reverse":"","Potential.contaminant":"","id":179,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"180","Best.MS.MS":180,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.056)QS(0.151)LREQPEMEDANS(0.793)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-11)QS(-7.2)LREQPEMEDANS(7.2)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_01","Experiment":"H100_Y50_01","MS.MS.m.z":819.68463,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.7471,"Uncalibrated...Calibrated.m.z..Da.":0.00389,"Mass.error..ppm.":-0.78021,"Mass.error..Da.":-0.00064,"Uncalibrated.mass.error..ppm.":3.9668,"Uncalibrated.mass.error..Da.":0.00325,"Max.intensity.m.z.0":819.6815,"Retention.time":10.157,"Retention.length":0.21748,"Calibrated.retention.time":10.157,"Calibrated.retention.time.start":10.109,"Calibrated.retention.time.finish":10.327,"Retention.time.calibration":0,"Number.of.data.points":59,"Number.of.scans":21,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00002,"MS.MS.count":1,"MS.MS.scan.number":9127,"Score":43.781,"Delta.score":40.006,"Combinatorics":3,"Intensity":18671000,"Reverse":"","Potential.contaminant":"","id":180,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"181","Best.MS.MS":181,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.018)QS(0.116)LREQPEMEDANS(0.866)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-17)QS(-8.7)LREQPEMEDANS(8.7)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_02","Experiment":"H100_Y50_02","MS.MS.m.z":819.68439,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.7244,"Uncalibrated...Calibrated.m.z..Da.":0.00305,"Mass.error..ppm.":-0.20938,"Mass.error..Da.":-0.00017,"Uncalibrated.mass.error..ppm.":3.5151,"Uncalibrated.mass.error..Da.":0.00288,"Max.intensity.m.z.0":819.34702,"Retention.time":10.231,"Retention.length":0.14263,"Calibrated.retention.time":10.231,"Calibrated.retention.time.start":10.177,"Calibrated.retention.time.finish":10.32,"Retention.time.calibration":0,"Number.of.data.points":43,"Number.of.scans":13,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":5.3188e-11,"MS.MS.count":1,"MS.MS.scan.number":9228,"Score":76.552,"Delta.score":69.149,"Combinatorics":3,"Intensity":27620000,"Reverse":"","Potential.contaminant":"","id":181,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"182","Best.MS.MS":182,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.118)QS(0.112)LREQPEMEDANS(0.771)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-8.2)QS(-8.4)LREQPEMEDANS(8.2)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_03","Experiment":"H100_Y50_03","MS.MS.m.z":819.68634,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.8648,"Uncalibrated...Calibrated.m.z..Da.":0.00399,"Mass.error..ppm.":0.28241,"Mass.error..Da.":0.00023,"Uncalibrated.mass.error..ppm.":5.1472,"Uncalibrated.mass.error..Da.":0.00422,"Max.intensity.m.z.0":819.68211,"Retention.time":10.256,"Retention.length":0.12217,"Calibrated.retention.time":10.256,"Calibrated.retention.time.start":10.194,"Calibrated.retention.time.finish":10.317,"Retention.time.calibration":0,"Number.of.data.points":42,"Number.of.scans":11,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":7.1657e-10,"MS.MS.count":1,"MS.MS.scan.number":9240,"Score":67.829,"Delta.score":60.425,"Combinatorics":3,"Intensity":29510000,"Reverse":"","Potential.contaminant":"","id":182,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"183","Best.MS.MS":183,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.118)QS(0.112)LREQPEMEDANS(0.771)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-8.2)QS(-8.4)LREQPEMEDANS(8.2)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_04","Experiment":"H100_Y50_04","MS.MS.m.z":819.34906,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.5531,"Uncalibrated...Calibrated.m.z..Da.":0.00373,"Mass.error..ppm.":-0.60448,"Mass.error..Da.":-0.0005,"Uncalibrated.mass.error..ppm.":3.9486,"Uncalibrated.mass.error..Da.":0.00324,"Max.intensity.m.z.0":819.68159,"Retention.time":10.253,"Retention.length":0.15309,"Calibrated.retention.time":10.253,"Calibrated.retention.time.start":10.194,"Calibrated.retention.time.finish":10.347,"Retention.time.calibration":0,"Number.of.data.points":46,"Number.of.scans":14,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.2693e-10,"MS.MS.count":1,"MS.MS.scan.number":9236,"Score":67.829,"Delta.score":63.536,"Combinatorics":3,"Intensity":29471000,"Reverse":"","Potential.contaminant":"","id":183,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"184","Best.MS.MS":184,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.095)QS(0.091)LREQPEMEDANS(0.815)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-9.3)QS(-9.5)LREQPEMEDANS(9.3)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_05","Experiment":"H100_Y50_05","MS.MS.m.z":819.34888,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.6109,"Uncalibrated...Calibrated.m.z..Da.":0.00378,"Mass.error..ppm.":-0.2666,"Mass.error..Da.":-0.00022,"Uncalibrated.mass.error..ppm.":4.3443,"Uncalibrated.mass.error..Da.":0.00356,"Max.intensity.m.z.0":819.68164,"Retention.time":10.281,"Retention.length":0.13294,"Calibrated.retention.time":10.281,"Calibrated.retention.time.start":10.214,"Calibrated.retention.time.finish":10.347,"Retention.time.calibration":0,"Number.of.data.points":43,"Number.of.scans":12,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.3337e-10,"MS.MS.count":1,"MS.MS.scan.number":9297,"Score":60.959,"Delta.score":56.666,"Combinatorics":3,"Intensity":26625000,"Reverse":"","Potential.contaminant":"","id":184,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"185","Best.MS.MS":185,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.005)QS(0.005)LREQPEMEDANS(0.99)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-23)QS(-23)LREQPEMEDANS(23)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_06","Experiment":"H100_Y50_06","MS.MS.m.z":819.68652,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":5.5213,"Uncalibrated...Calibrated.m.z..Da.":0.00452,"Mass.error..ppm.":-0.31421,"Mass.error..Da.":-0.00026,"Uncalibrated.mass.error..ppm.":5.2071,"Uncalibrated.mass.error..Da.":0.00427,"Max.intensity.m.z.0":819.68167,"Retention.time":10.958,"Retention.length":0.16261,"Calibrated.retention.time":10.958,"Calibrated.retention.time.start":10.899,"Calibrated.retention.time.finish":11.062,"Retention.time.calibration":0,"Number.of.data.points":41,"Number.of.scans":15,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.3326e-14,"MS.MS.count":1,"MS.MS.scan.number":9883,"Score":82.311,"Delta.score":74.908,"Combinatorics":3,"Intensity":19974000,"Reverse":"","Potential.contaminant":"","id":185,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"186","Best.MS.MS":186,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.118)QS(0.112)LREQPEMEDANS(0.771)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-8.2)QS(-8.4)LREQPEMEDANS(8.2)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_01","Experiment":"H100_Y100_01","MS.MS.m.z":819.68402,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.2313,"Uncalibrated...Calibrated.m.z..Da.":0.00347,"Mass.error..ppm.":-0.43767,"Mass.error..Da.":-0.00036,"Uncalibrated.mass.error..ppm.":3.7937,"Uncalibrated.mass.error..Da.":0.00311,"Max.intensity.m.z.0":819.6813,"Retention.time":10.161,"Retention.length":0.13222,"Calibrated.retention.time":10.161,"Calibrated.retention.time.start":10.116,"Calibrated.retention.time.finish":10.248,"Retention.time.calibration":0,"Number.of.data.points":39,"Number.of.scans":12,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.4276e-10,"MS.MS.count":1,"MS.MS.scan.number":9164,"Score":67.829,"Delta.score":63.536,"Combinatorics":3,"Intensity":22313000,"Reverse":"","Potential.contaminant":"","id":186,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"187","Best.MS.MS":187,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAETQS(0.001)LREQPEMEDANS(0.999)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-38)QS(-31)LREQPEMEDANS(31)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_02","Experiment":"H100_Y100_02","MS.MS.m.z":819.685,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.8363,"Uncalibrated...Calibrated.m.z..Da.":0.00314,"Mass.error..ppm.":-0.3438,"Mass.error..Da.":-0.00028,"Uncalibrated.mass.error..ppm.":3.4925,"Uncalibrated.mass.error..Da.":0.00286,"Max.intensity.m.z.0":819.6819,"Retention.time":10.259,"Retention.length":0.12181,"Calibrated.retention.time":10.259,"Calibrated.retention.time.start":10.206,"Calibrated.retention.time.finish":10.328,"Retention.time.calibration":0,"Number.of.data.points":43,"Number.of.scans":11,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.3768e-24,"MS.MS.count":1,"MS.MS.scan.number":9277,"Score":105.75,"Delta.score":98.343,"Combinatorics":3,"Intensity":25917000,"Reverse":"","Potential.contaminant":"","id":187,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"188","Best.MS.MS":188,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.006)QS(0.028)LREQPEMEDANS(0.967)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-22)QS(-15)LREQPEMEDANS(15)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_03","Experiment":"H100_Y100_03","MS.MS.m.z":819.6839,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.9892,"Uncalibrated...Calibrated.m.z..Da.":0.00327,"Mass.error..ppm.":0.12712,"Mass.error..Da.":0.0001,"Uncalibrated.mass.error..ppm.":4.1163,"Uncalibrated.mass.error..Da.":0.00337,"Max.intensity.m.z.0":819.68177,"Retention.time":10.215,"Retention.length":0.13192,"Calibrated.retention.time":10.215,"Calibrated.retention.time.start":10.164,"Calibrated.retention.time.finish":10.296,"Retention.time.calibration":0,"Number.of.data.points":40,"Number.of.scans":12,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":4.3504e-18,"MS.MS.count":1,"MS.MS.scan.number":9215,"Score":97.718,"Delta.score":90.315,"Combinatorics":3,"Intensity":26827000,"Reverse":"","Potential.contaminant":"","id":188,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"189","Best.MS.MS":189,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
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{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.251)QS(0.251)LREQPEMEDANS(0.498)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-3)QS(-3)LREQPEMEDANS(3)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_06","Experiment":"H100_Y100_06","MS.MS.m.z":819.68573,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":5.3851,"Uncalibrated...Calibrated.m.z..Da.":0.00441,"Mass.error..ppm.":-0.4233,"Mass.error..Da.":-0.00035,"Uncalibrated.mass.error..ppm.":4.9618,"Uncalibrated.mass.error..Da.":0.00407,"Max.intensity.m.z.0":819.68157,"Retention.time":10.954,"Retention.length":0.11175,"Calibrated.retention.time":10.954,"Calibrated.retention.time.start":10.906,"Calibrated.retention.time.finish":11.018,"Retention.time.calibration":0,"Number.of.data.points":34,"Number.of.scans":10,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.0524e-07,"MS.MS.count":1,"MS.MS.scan.number":9867,"Score":51.418,"Delta.score":44.015,"Combinatorics":3,"Intensity":12278000,"Reverse":"","Potential.contaminant":"","id":190,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"191","Best.MS.MS":191,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.016)QS(0.109)LREQPEMEDANS(0.875)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-18)QS(-9)LREQPEMEDANS(9)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_01","Experiment":"H100_Y150_01","MS.MS.m.z":819.68396,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.5228,"Uncalibrated...Calibrated.m.z..Da.":0.00289,"Mass.error..ppm.":-0.23836,"Mass.error..Da.":-0.0002,"Uncalibrated.mass.error..ppm.":3.2845,"Uncalibrated.mass.error..Da.":0.00269,"Max.intensity.m.z.0":819.68179,"Retention.time":10.143,"Retention.length":0.12154,"Calibrated.retention.time":10.143,"Calibrated.retention.time.start":10.087,"Calibrated.retention.time.finish":10.209,"Retention.time.calibration":0,"Number.of.data.points":40,"Number.of.scans":11,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.5488e-10,"MS.MS.count":1,"MS.MS.scan.number":9135,"Score":85.592,"Delta.score":78.188,"Combinatorics":3,"Intensity":33662000,"Reverse":"","Potential.contaminant":"","id":191,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"192","Best.MS.MS":192,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.006)QS(0.031)LREQPEMEDANS(0.963)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-22)QS(-15)LREQPEMEDANS(15)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_02","Experiment":"H100_Y150_02","MS.MS.m.z":819.34918,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.492,"Uncalibrated...Calibrated.m.z..Da.":0.00286,"Mass.error..ppm.":-0.45295,"Mass.error..Da.":-0.00037,"Uncalibrated.mass.error..ppm.":3.039,"Uncalibrated.mass.error..Da.":0.00249,"Max.intensity.m.z.0":819.68181,"Retention.time":10.217,"Retention.length":0.11159,"Calibrated.retention.time":10.217,"Calibrated.retention.time.start":10.169,"Calibrated.retention.time.finish":10.281,"Retention.time.calibration":0,"Number.of.data.points":40,"Number.of.scans":10,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":4.3504e-18,"MS.MS.count":1,"MS.MS.scan.number":9230,"Score":89.904,"Delta.score":82.5,"Combinatorics":3,"Intensity":27155000,"Reverse":"","Potential.contaminant":"","id":192,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"193","Best.MS.MS":193,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.001)QS(0.007)LREQPEMEDANS(0.992)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-30)QS(-21)LREQPEMEDANS(21)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_03","Experiment":"H100_Y150_03","MS.MS.m.z":820.01996,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.4663,"Uncalibrated...Calibrated.m.z..Da.":0.00284,"Mass.error..ppm.":-0.0023,"Mass.error..Da.":-1.8867e-06,"Uncalibrated.mass.error..ppm.":3.464,"Uncalibrated.mass.error..Da.":0.00284,"Max.intensity.m.z.0":819.68165,"Retention.time":10.267,"Retention.length":0.12196,"Calibrated.retention.time":10.267,"Calibrated.retention.time.start":10.215,"Calibrated.retention.time.finish":10.337,"Retention.time.calibration":0,"Number.of.data.points":40,"Number.of.scans":11,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.0781e-13,"MS.MS.count":1,"MS.MS.scan.number":9272,"Score":82.311,"Delta.score":74.908,"Combinatorics":3,"Intensity":25551000,"Reverse":"","Potential.contaminant":"","id":193,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"194","Best.MS.MS":194,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.017)QS(0.008)LREQPEMEDANS(0.975)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-18)QS(-21)LREQPEMEDANS(18)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_04","Experiment":"H100_Y150_04","MS.MS.m.z":819.68451,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.1613,"Uncalibrated...Calibrated.m.z..Da.":0.00341,"Mass.error..ppm.":-0.00459,"Mass.error..Da.":-3.7642e-06,"Uncalibrated.mass.error..ppm.":4.1568,"Uncalibrated.mass.error..Da.":0.00341,"Max.intensity.m.z.0":819.68169,"Retention.time":10.244,"Retention.length":0.11177,"Calibrated.retention.time":10.244,"Calibrated.retention.time.start":10.195,"Calibrated.retention.time.finish":10.307,"Retention.time.calibration":0,"Number.of.data.points":37,"Number.of.scans":10,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.943e-10,"MS.MS.count":1,"MS.MS.scan.number":9272,"Score":74.949,"Delta.score":67.546,"Combinatorics":3,"Intensity":25887000,"Reverse":"","Potential.contaminant":"","id":194,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"195","Best.MS.MS":195,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.052)QS(0.05)LREQPEMEDANS(0.897)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-12)QS(-13)LREQPEMEDANS(12)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_05","Experiment":"H100_Y150_05","MS.MS.m.z":819.3515,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":5.7658,"Uncalibrated...Calibrated.m.z..Da.":0.00472,"Mass.error..ppm.":-0.0203,"Mass.error..Da.":-0.00002,"Uncalibrated.mass.error..ppm.":5.7455,"Uncalibrated.mass.error..Da.":0.00471,"Max.intensity.m.z.0":819.68119,"Retention.time":10.916,"Retention.length":0.16144,"Calibrated.retention.time":10.916,"Calibrated.retention.time.start":10.866,"Calibrated.retention.time.finish":11.027,"Retention.time.calibration":0,"Number.of.data.points":34,"Number.of.scans":15,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":6.5609e-08,"MS.MS.count":1,"MS.MS.scan.number":9877,"Score":49.077,"Delta.score":44.877,"Combinatorics":3,"Intensity":18907000,"Reverse":"","Potential.contaminant":"","id":195,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"196","Best.MS.MS":196,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.003)QS(0.014)LREQPEMEDANS(0.983)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-25)QS(-18)LREQPEMEDANS(18)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_06","Experiment":"H100_Y150_06","MS.MS.m.z":819.68604,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.8395,"Uncalibrated...Calibrated.m.z..Da.":0.00397,"Mass.error..ppm.":0.26547,"Mass.error..Da.":0.00022,"Uncalibrated.mass.error..ppm.":5.1049,"Uncalibrated.mass.error..Da.":0.00418,"Max.intensity.m.z.0":819.68172,"Retention.time":10.948,"Retention.length":0.17148,"Calibrated.retention.time":10.948,"Calibrated.retention.time.start":10.904,"Calibrated.retention.time.finish":11.076,"Retention.time.calibration":0,"Number.of.data.points":38,"Number.of.scans":16,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.4023e-07,"MS.MS.count":1,"MS.MS.scan.number":9841,"Score":62.145,"Delta.score":59.255,"Combinatorics":3,"Intensity":20167000,"Reverse":"","Potential.contaminant":"","id":196,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"197","Best.MS.MS":197,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
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{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.001)QS(0.001)LREQPEMEDANS(0.998)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-30)QS(-30)LREQPEMEDANS(30)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_02","Experiment":"H100_Y200_02","MS.MS.m.z":819.6842,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.6444,"Uncalibrated...Calibrated.m.z..Da.":0.00299,"Mass.error..ppm.":-0.91816,"Mass.error..Da.":-0.00075,"Uncalibrated.mass.error..ppm.":2.7262,"Uncalibrated.mass.error..Da.":0.00223,"Max.intensity.m.z.0":819.68177,"Retention.time":10.202,"Retention.length":0.10131,"Calibrated.retention.time":10.202,"Calibrated.retention.time.start":10.164,"Calibrated.retention.time.finish":10.265,"Retention.time.calibration":0,"Number.of.data.points":35,"Number.of.scans":9,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.0523e-23,"MS.MS.count":1,"MS.MS.scan.number":9240,"Score":97.718,"Delta.score":90.315,"Combinatorics":3,"Intensity":31365000,"Reverse":"","Potential.contaminant":"","id":198,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"199","Best.MS.MS":199,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQS(Phospho (STY))LREQPEMEDANSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.071)QS(0.465)LREQPEMEDANS(0.465)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-8.2)QS(0)LREQPEMEDANS(0)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_03","Experiment":"H100_Y200_03","MS.MS.m.z":819.68451,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.7885,"Uncalibrated...Calibrated.m.z..Da.":0.0031,"Mass.error..ppm.":-0.28579,"Mass.error..Da.":-0.00023,"Uncalibrated.mass.error..ppm.":3.5027,"Uncalibrated.mass.error..Da.":0.00287,"Max.intensity.m.z.0":819.68191,"Retention.time":10.214,"Retention.length":0.14192,"Calibrated.retention.time":10.214,"Calibrated.retention.time.start":10.161,"Calibrated.retention.time.finish":10.303,"Retention.time.calibration":0,"Number.of.data.points":42,"Number.of.scans":13,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.4088e-10,"MS.MS.count":1,"MS.MS.scan.number":9250,"Score":67.829,"Delta.score":60.425,"Combinatorics":3,"Intensity":20829000,"Reverse":"","Potential.contaminant":"","id":199,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"200","Best.MS.MS":200,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.003)QS(0.003)LREQPEMEDANS(0.993)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-25)QS(-25)LREQPEMEDANS(25)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_04","Experiment":"H100_Y200_04","MS.MS.m.z":819.68524,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":3.9315,"Uncalibrated...Calibrated.m.z..Da.":0.00322,"Mass.error..ppm.":-0.30656,"Mass.error..Da.":-0.00025,"Uncalibrated.mass.error..ppm.":3.625,"Uncalibrated.mass.error..Da.":0.00297,"Max.intensity.m.z.0":819.68181,"Retention.time":10.255,"Retention.length":0.12163,"Calibrated.retention.time":10.255,"Calibrated.retention.time.start":10.209,"Calibrated.retention.time.finish":10.331,"Retention.time.calibration":0,"Number.of.data.points":36,"Number.of.scans":11,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.1966e-13,"MS.MS.count":1,"MS.MS.scan.number":9302,"Score":85.864,"Delta.score":78.46,"Combinatorics":3,"Intensity":29726000,"Reverse":"","Potential.contaminant":"","id":200,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"201","Best.MS.MS":201,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.001)QS(0.001)LREQPEMEDANS(0.998)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-29)QS(-32)LREQPEMEDANS(29)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_05","Experiment":"H100_Y200_05","MS.MS.m.z":819.68518,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":5.3557,"Uncalibrated...Calibrated.m.z..Da.":0.00439,"Mass.error..ppm.":-1.1497,"Mass.error..Da.":-0.00094,"Uncalibrated.mass.error..ppm.":4.206,"Uncalibrated.mass.error..Da.":0.00345,"Max.intensity.m.z.0":819.68151,"Retention.time":10.903,"Retention.length":0.15128,"Calibrated.retention.time":10.903,"Calibrated.retention.time.start":10.86,"Calibrated.retention.time.finish":11.011,"Retention.time.calibration":0,"Number.of.data.points":41,"Number.of.scans":14,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":4.7968e-18,"MS.MS.count":1,"MS.MS.scan.number":9875,"Score":85.864,"Delta.score":80.693,"Combinatorics":3,"Intensity":18692000,"Reverse":"","Potential.contaminant":"","id":201,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"202","Best.MS.MS":202,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.02)QS(0.124)LREQPEMEDANS(0.855)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-16)QS(-8.4)LREQPEMEDANS(8.4)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_06","Experiment":"H100_Y200_06","MS.MS.m.z":819.68573,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":5.0583,"Uncalibrated...Calibrated.m.z..Da.":0.00414,"Mass.error..ppm.":0.34877,"Mass.error..Da.":0.00029,"Uncalibrated.mass.error..ppm.":5.407,"Uncalibrated.mass.error..Da.":0.00443,"Max.intensity.m.z.0":819.68192,"Retention.time":10.923,"Retention.length":0.08073,"Calibrated.retention.time":10.923,"Calibrated.retention.time.start":10.878,"Calibrated.retention.time.finish":10.959,"Retention.time.calibration":0,"Number.of.data.points":26,"Number.of.scans":7,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":9.1358e-10,"MS.MS.count":1,"MS.MS.scan.number":9873,"Score":67.829,"Delta.score":60.425,"Combinatorics":3,"Intensity":26409000,"Reverse":"","Potential.contaminant":"","id":202,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"203","Best.MS.MS":203,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
{"Sequence":"AAAETQSLREQPEMEDANSEK","Length":21,"Modifications":"Acetyl (Protein N-term),Phospho (STY)","Modified.sequence":"_(Acetyl (Protein N-term))AAAETQSLREQPEMEDANS(Phospho (STY))EK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"AAAET(0.047)QS(0.286)LREQPEMEDANS(0.666)EK","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"AAAET(-11)QS(-3.7)LREQPEMEDANS(3.7)EK","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_01","Experiment":"Honly_ind_01","MS.MS.m.z":819.35065,"Charge":3,"m.z":819.34762,"Mass":2455.02103,"Uncalibrated...Calibrated.m.z..ppm.":4.8424,"Uncalibrated...Calibrated.m.z..Da.":0.00397,"Mass.error..ppm.":-0.81075,"Mass.error..Da.":-0.00066,"Uncalibrated.mass.error..ppm.":4.0317,"Uncalibrated.mass.error..Da.":0.0033,"Max.intensity.m.z.0":819.68155,"Retention.time":10.02,"Retention.length":0.22606,"Calibrated.retention.time":10.02,"Calibrated.retention.time.start":9.9685,"Calibrated.retention.time.finish":10.195,"Retention.time.calibration":0,"Number.of.data.points":66,"Number.of.scans":21,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.7106e-06,"MS.MS.count":1,"MS.MS.scan.number":8976,"Score":43.781,"Delta.score":41.365,"Combinatorics":3,"Intensity":20236000,"Reverse":"","Potential.contaminant":"","id":203,"Protein.group.IDs":"2618","Peptide.ID":6,"Mod..peptide.ID":9,"MS.MS.IDs":"204","Best.MS.MS":204,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5741;5742;9921"}
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{"Sequence":"AAAPTVVFLDELDSIAK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_AAAPTVVFLDELDSIAK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":880.48035,"Charge":2,"m.z":880.47746,"Mass":1758.94037,"Uncalibrated...Calibrated.m.z..ppm.":1.2356,"Uncalibrated...Calibrated.m.z..Da.":0.00109,"Mass.error..ppm.":0.27062,"Mass.error..Da.":0.00024,"Uncalibrated.mass.error..ppm.":1.5062,"Uncalibrated.mass.error..Da.":0.00133,"Max.intensity.m.z.0":880.4774,"Retention.time":18.285,"Retention.length":0.06033,"Calibrated.retention.time":18.285,"Calibrated.retention.time.start":18.243,"Calibrated.retention.time.finish":18.303,"Retention.time.calibration":0,"Number.of.data.points":15,"Number.of.scans":5,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00008,"MS.MS.count":1,"MS.MS.scan.number":19695,"Score":66.335,"Delta.score":64.803,"Combinatorics":1,"Intensity":10328000,"Reverse":"","Potential.contaminant":"","id":232,"Protein.group.IDs":"912","Peptide.ID":10,"Mod..peptide.ID":13,"MS.MS.IDs":"233","Best.MS.MS":233,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"AAAPTVVFLDELDSIAK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_AAAPTVVFLDELDSIAK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":880.97943,"Charge":2,"m.z":880.47746,"Mass":1758.94037,"Uncalibrated...Calibrated.m.z..ppm.":1.255,"Uncalibrated...Calibrated.m.z..Da.":0.00111,"Mass.error..ppm.":-0.07307,"Mass.error..Da.":-0.00006,"Uncalibrated.mass.error..ppm.":1.1819,"Uncalibrated.mass.error..Da.":0.00104,"Max.intensity.m.z.0":880.47714,"Retention.time":18.284,"Retention.length":0.07075,"Calibrated.retention.time":18.284,"Calibrated.retention.time.start":18.239,"Calibrated.retention.time.finish":18.31,"Retention.time.calibration":0,"Number.of.data.points":17,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00002,"MS.MS.count":1,"MS.MS.scan.number":19728,"Score":76.151,"Delta.score":73.609,"Combinatorics":1,"Intensity":32212000,"Reverse":"","Potential.contaminant":"","id":233,"Protein.group.IDs":"912","Peptide.ID":10,"Mod..peptide.ID":13,"MS.MS.IDs":"234","Best.MS.MS":234,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"ACARPLISVYSEK","Length":13,"Modifications":"Acetyl (Protein N-term)","Modified.sequence":"_(Acetyl (Protein N-term))ACARPLISVYSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_01","Experiment":"H100_Y25_01","MS.MS.m.z":768.40265,"Charge":2,"m.z":768.39796,"Mass":1534.78136,"Uncalibrated...Calibrated.m.z..ppm.":5.7061,"Uncalibrated...Calibrated.m.z..Da.":0.00438,"Mass.error..ppm.":0.71093,"Mass.error..Da.":0.00055,"Uncalibrated.mass.error..ppm.":6.417,"Uncalibrated.mass.error..Da.":0.00493,"Max.intensity.m.z.0":768.39852,"Retention.time":12.542,"Retention.length":0.06557,"Calibrated.retention.time":12.542,"Calibrated.retention.time.start":12.506,"Calibrated.retention.time.finish":12.571,"Retention.time.calibration":0,"Number.of.data.points":24,"Number.of.scans":10,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00042,"MS.MS.count":1,"MS.MS.scan.number":11091,"Score":67.358,"Delta.score":59.366,"Combinatorics":1,"Intensity":3675500,"Reverse":"","Potential.contaminant":"","id":1892,"Protein.group.IDs":"1276","Peptide.ID":124,"Mod..peptide.ID":134,"MS.MS.IDs":"1912","Best.MS.MS":1912,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"ACARPLISVYSEK","Length":13,"Modifications":"Acetyl (Protein N-term)","Modified.sequence":"_(Acetyl (Protein N-term))ACARPLISVYSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_02","Experiment":"H100_Y25_02","MS.MS.m.z":768.3996,"Charge":2,"m.z":768.39796,"Mass":1534.78136,"Uncalibrated...Calibrated.m.z..ppm.":4.2206,"Uncalibrated...Calibrated.m.z..Da.":0.00324,"Mass.error..ppm.":0.88307,"Mass.error..Da.":0.00068,"Uncalibrated.mass.error..ppm.":5.1036,"Uncalibrated.mass.error..Da.":0.00392,"Max.intensity.m.z.0":768.39964,"Retention.time":12.451,"Retention.length":0.06097,"Calibrated.retention.time":12.451,"Calibrated.retention.time.start":12.41,"Calibrated.retention.time.finish":12.471,"Retention.time.calibration":0,"Number.of.data.points":12,"Number.of.scans":5,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.03497,"MS.MS.count":1,"MS.MS.scan.number":12083,"Score":44.601,"Delta.score":35.669,"Combinatorics":1,"Intensity":3824900,"Reverse":"","Potential.contaminant":"","id":1893,"Protein.group.IDs":"1276","Peptide.ID":124,"Mod..peptide.ID":134,"MS.MS.IDs":"1913","Best.MS.MS":1913,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"ACARPLISVYSEK","Length":13,"Modifications":"Acetyl (Protein N-term)","Modified.sequence":"_(Acetyl (Protein N-term))ACARPLISVYSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_03","Experiment":"H100_Y25_03","MS.MS.m.z":768.90387,"Charge":2,"m.z":768.39796,"Mass":1534.78136,"Uncalibrated...Calibrated.m.z..ppm.":5.5754,"Uncalibrated...Calibrated.m.z..Da.":0.00428,"Mass.error..ppm.":1.9374,"Mass.error..Da.":0.00149,"Uncalibrated.mass.error..ppm.":7.5128,"Uncalibrated.mass.error..Da.":0.00577,"Max.intensity.m.z.0":768.90045,"Retention.time":12.517,"Retention.length":0.08182,"Calibrated.retention.time":12.517,"Calibrated.retention.time.start":12.461,"Calibrated.retention.time.finish":12.543,"Retention.time.calibration":0,"Number.of.data.points":16,"Number.of.scans":7,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00027,"MS.MS.count":1,"MS.MS.scan.number":12177,"Score":69.92,"Delta.score":46.358,"Combinatorics":1,"Intensity":3454600,"Reverse":"","Potential.contaminant":"","id":1894,"Protein.group.IDs":"1276","Peptide.ID":124,"Mod..peptide.ID":134,"MS.MS.IDs":"1914","Best.MS.MS":1914,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"ACARPLISVYSEK","Length":13,"Modifications":"Acetyl (Protein N-term)","Modified.sequence":"_(Acetyl (Protein N-term))ACARPLISVYSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_05","Experiment":"H100_Y25_05","MS.MS.m.z":768.40204,"Charge":2,"m.z":768.39796,"Mass":1534.78136,"Uncalibrated...Calibrated.m.z..ppm.":4.7067,"Uncalibrated...Calibrated.m.z..Da.":0.00362,"Mass.error..ppm.":0.91053,"Mass.error..Da.":0.0007,"Uncalibrated.mass.error..ppm.":5.6173,"Uncalibrated.mass.error..Da.":0.00432,"Max.intensity.m.z.0":768.39937,"Retention.time":12.565,"Retention.length":0.07222,"Calibrated.retention.time":12.565,"Calibrated.retention.time.start":12.519,"Calibrated.retention.time.finish":12.591,"Retention.time.calibration":0,"Number.of.data.points":15,"Number.of.scans":6,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00058,"MS.MS.count":1,"MS.MS.scan.number":12203,"Score":64.394,"Delta.score":49.304,"Combinatorics":1,"Intensity":2875200,"Reverse":"","Potential.contaminant":"","id":1895,"Protein.group.IDs":"1276","Peptide.ID":124,"Mod..peptide.ID":134,"MS.MS.IDs":"1915","Best.MS.MS":1915,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
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{"Sequence":"ACARPLISVYSEK","Length":13,"Modifications":"Acetyl (Protein N-term)","Modified.sequence":"_(Acetyl (Protein N-term))ACARPLISVYSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_01","Experiment":"H100_Y50_01","MS.MS.m.z":768.90247,"Charge":2,"m.z":768.39796,"Mass":1534.78136,"Uncalibrated...Calibrated.m.z..ppm.":4.692,"Uncalibrated...Calibrated.m.z..Da.":0.00361,"Mass.error..ppm.":0.13914,"Mass.error..Da.":0.00011,"Uncalibrated.mass.error..ppm.":4.8311,"Uncalibrated.mass.error..Da.":0.00371,"Max.intensity.m.z.0":768.39954,"Retention.time":12.461,"Retention.length":0.08456,"Calibrated.retention.time":12.461,"Calibrated.retention.time.start":12.411,"Calibrated.retention.time.finish":12.495,"Retention.time.calibration":0,"Number.of.data.points":14,"Number.of.scans":8,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00002,"MS.MS.count":1,"MS.MS.scan.number":11962,"Score":96.591,"Delta.score":77.299,"Combinatorics":1,"Intensity":3037700,"Reverse":"","Potential.contaminant":"","id":1897,"Protein.group.IDs":"1276","Peptide.ID":124,"Mod..peptide.ID":134,"MS.MS.IDs":"1917","Best.MS.MS":1917,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"ACARPLISVYSEK","Length":13,"Modifications":"Acetyl (Protein N-term)","Modified.sequence":"_(Acetyl (Protein N-term))ACARPLISVYSEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":1,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_03","Experiment":"H100_Y50_03","MS.MS.m.z":768.40558,"Charge":2,"m.z":768.39796,"Mass":1534.78136,"Uncalibrated...Calibrated.m.z..ppm.":4.7902,"Uncalibrated...Calibrated.m.z..Da.":0.00368,"Mass.error..ppm.":1.4266,"Mass.error..Da.":0.0011,"Uncalibrated.mass.error..ppm.":6.2168,"Uncalibrated.mass.error..Da.":0.00478,"Max.intensity.m.z.0":768.40007,"Retention.time":12.531,"Retention.length":0.07171,"Calibrated.retention.time":12.531,"Calibrated.retention.time.start":12.495,"Calibrated.retention.time.finish":12.567,"Retention.time.calibration":0,"Number.of.data.points":15,"Number.of.scans":6,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00008,"MS.MS.count":1,"MS.MS.scan.number":12185,"Score":78.814,"Delta.score":64.91,"Combinatorics":1,"Intensity":3681300,"Reverse":"","Potential.contaminant":"","id":1898,"Protein.group.IDs":"1276","Peptide.ID":124,"Mod..peptide.ID":134,"MS.MS.IDs":"1918","Best.MS.MS":1918,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"AQHAVILDQEK","Length":11,"Modifications":"Unmodified","Modified.sequence":"_AQHAVILDQEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"Q3E792","Leading.proteins":"sp|Q3E792|RS25A_YEAST40SribosomalproteinS25-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPS25APE=1SV=1","Leading.razor.protein":"sp|Q3E792|RS25A_YEAST40SribosomalproteinS25-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPS25APE=1SV=1","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":417.89468,"Charge":3,"m.z":417.89458,"Mass":1250.6619,"Uncalibrated...Calibrated.m.z..ppm.":-0.37503,"Uncalibrated...Calibrated.m.z..Da.":-0.00016,"Mass.error..ppm.":0.61825,"Mass.error..Da.":0.00026,"Uncalibrated.mass.error..ppm.":0.24322,"Uncalibrated.mass.error..Da.":0.0001,"Max.intensity.m.z.0":417.89486,"Retention.time":6.489,"Retention.length":0.08858,"Calibrated.retention.time":6.489,"Calibrated.retention.time.start":6.4348,"Calibrated.retention.time.finish":6.5234,"Retention.time.calibration":0,"Number.of.data.points":19,"Number.of.scans":8,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00021,"MS.MS.count":1,"MS.MS.scan.number":4451,"Score":64.394,"Delta.score":52.017,"Combinatorics":1,"Intensity":72154000,"Reverse":"","Potential.contaminant":"","id":9886,"Protein.group.IDs":"519","Peptide.ID":735,"Mod..peptide.ID":780,"MS.MS.IDs":"10004","Best.MS.MS":10004,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"AVATEVSANFISVK","Length":14,"Modifications":"Unmodified","Modified.sequence":"_AVATEVSANFISVK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":718.39581,"Charge":2,"m.z":718.3932,"Mass":1434.77184,"Uncalibrated...Calibrated.m.z..ppm.":2.494,"Uncalibrated...Calibrated.m.z..Da.":0.00179,"Mass.error..ppm.":0.60504,"Mass.error..Da.":0.00043,"Uncalibrated.mass.error..ppm.":3.099,"Uncalibrated.mass.error..Da.":0.00223,"Max.intensity.m.z.0":718.39441,"Retention.time":13.019,"Retention.length":0.09091,"Calibrated.retention.time":13.019,"Calibrated.retention.time.start":12.983,"Calibrated.retention.time.finish":13.074,"Retention.time.calibration":0,"Number.of.data.points":20,"Number.of.scans":8,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":2.396e-08,"MS.MS.count":1,"MS.MS.scan.number":12990,"Score":83.692,"Delta.score":76.652,"Combinatorics":1,"Intensity":9215600,"Reverse":"","Potential.contaminant":"","id":14008,"Protein.group.IDs":"912","Peptide.ID":1016,"Mod..peptide.ID":1073,"MS.MS.IDs":"14170","Best.MS.MS":14170,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"DASPINRWSPTR","Length":12,"Modifications":"2 Phospho (STY)","Modified.sequence":"_DAS(Phospho (STY))PINRWS(Phospho (STY))PTR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"DAS(1)PINRWS(0.656)PT(0.344)R","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"DAS(38)PINRWS(2.8)PT(-2.8)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-SECPEP","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_02","Experiment":"H100_Y50_02","MS.MS.m.z":779.96497,"Charge":2,"m.z":780.32381,"Mass":1558.63307,"Uncalibrated...Calibrated.m.z..ppm.":2.8395,"Uncalibrated...Calibrated.m.z..Da.":0.00222,"Mass.error..ppm.":-0.47443,"Mass.error..Da.":-0.00037,"Uncalibrated.mass.error..ppm.":2.3651,"Uncalibrated.mass.error..Da.":0.00185,"Max.intensity.m.z.0":780.32359,"Retention.time":9.8228,"Retention.length":0.33381,"Calibrated.retention.time":9.8228,"Calibrated.retention.time.start":9.7009,"Calibrated.retention.time.finish":10.035,"Retention.time.calibration":0,"Number.of.data.points":106,"Number.of.scans":32,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00043,"MS.MS.count":1,"MS.MS.scan.number":8695,"Score":53.747,"Delta.score":42.893,"Combinatorics":3,"Intensity":149170000,"Reverse":"","Potential.contaminant":"","id":16022,"Protein.group.IDs":"2618","Peptide.ID":1194,"Mod..peptide.ID":1264,"MS.MS.IDs":"16195","Best.MS.MS":16195,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5743;5744"}
{"Sequence":"DASPINRWSPTR","Length":12,"Modifications":"2 Phospho (STY)","Modified.sequence":"_DAS(Phospho (STY))PINRWS(Phospho (STY))PTR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"DAS(1)PINRWS(0.849)PT(0.151)R","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"DAS(36)PINRWS(7.5)PT(-7.5)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_04","Experiment":"H100_Y50_04","MS.MS.m.z":520.55402,"Charge":3,"m.z":520.55163,"Mass":1558.63307,"Uncalibrated...Calibrated.m.z..ppm.":3.6056,"Uncalibrated...Calibrated.m.z..Da.":0.00188,"Mass.error..ppm.":-0.40299,"Mass.error..Da.":-0.00021,"Uncalibrated.mass.error..ppm.":3.2026,"Uncalibrated.mass.error..Da.":0.00167,"Max.intensity.m.z.0":520.55136,"Retention.time":9.8713,"Retention.length":0.3033,"Calibrated.retention.time":9.8713,"Calibrated.retention.time.start":9.7082,"Calibrated.retention.time.finish":10.012,"Retention.time.calibration":0,"Number.of.data.points":80,"Number.of.scans":29,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00027,"MS.MS.count":1,"MS.MS.scan.number":8696,"Score":40.28,"Delta.score":36.946,"Combinatorics":3,"Intensity":58098000,"Reverse":"","Potential.contaminant":"","id":16023,"Protein.group.IDs":"2618","Peptide.ID":1194,"Mod..peptide.ID":1264,"MS.MS.IDs":"16196","Best.MS.MS":16196,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5743;5744"}
{"Sequence":"DASPINRWSPTR","Length":12,"Modifications":"2 Phospho (STY)","Modified.sequence":"_DAS(Phospho (STY))PINRWS(Phospho (STY))PTR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"DAS(1)PINRWS(0.883)PT(0.117)R","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"DAS(38)PINRWS(8.8)PT(-8.8)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_01","Experiment":"H100_Y100_01","MS.MS.m.z":520.55353,"Charge":3,"m.z":520.55163,"Mass":1558.63307,"Uncalibrated...Calibrated.m.z..ppm.":3.3683,"Uncalibrated...Calibrated.m.z..Da.":0.00175,"Mass.error..ppm.":-0.34831,"Mass.error..Da.":-0.00018,"Uncalibrated.mass.error..ppm.":3.02,"Uncalibrated.mass.error..Da.":0.00157,"Max.intensity.m.z.0":520.55147,"Retention.time":9.8004,"Retention.length":0.29202,"Calibrated.retention.time":9.8004,"Calibrated.retention.time.start":9.682,"Calibrated.retention.time.finish":9.974,"Retention.time.calibration":0,"Number.of.data.points":84,"Number.of.scans":28,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00056,"MS.MS.count":1,"MS.MS.scan.number":8633,"Score":45.269,"Delta.score":41.982,"Combinatorics":3,"Intensity":62711000,"Reverse":"","Potential.contaminant":"","id":16024,"Protein.group.IDs":"2618","Peptide.ID":1194,"Mod..peptide.ID":1264,"MS.MS.IDs":"16197","Best.MS.MS":16197,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5743;5744"}
{"Sequence":"DASPINRWSPTR","Length":12,"Modifications":"2 Phospho (STY)","Modified.sequence":"_DAS(Phospho (STY))PINRWS(Phospho (STY))PTR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"DAS(1)PINRWS(0.864)PT(0.136)R","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"DAS(38)PINRWS(8)PT(-8)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_03","Experiment":"H100_Y100_03","MS.MS.m.z":520.55414,"Charge":3,"m.z":520.55163,"Mass":1558.63307,"Uncalibrated...Calibrated.m.z..ppm.":4.4751,"Uncalibrated...Calibrated.m.z..Da.":0.00233,"Mass.error..ppm.":-0.71535,"Mass.error..Da.":-0.00037,"Uncalibrated.mass.error..ppm.":3.7598,"Uncalibrated.mass.error..Da.":0.00196,"Max.intensity.m.z.0":520.55125,"Retention.time":9.8351,"Retention.length":0.22155,"Calibrated.retention.time":9.8351,"Calibrated.retention.time.start":9.73,"Calibrated.retention.time.finish":9.9516,"Retention.time.calibration":0,"Number.of.data.points":64,"Number.of.scans":21,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00059,"MS.MS.count":1,"MS.MS.scan.number":8688,"Score":41.939,"Delta.score":38.652,"Combinatorics":3,"Intensity":49294000,"Reverse":"","Potential.contaminant":"","id":16025,"Protein.group.IDs":"2618","Peptide.ID":1194,"Mod..peptide.ID":1264,"MS.MS.IDs":"16198","Best.MS.MS":16198,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5743;5744"}
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{"Sequence":"EVDIGIPDATGR","Length":12,"Modifications":"Unmodified","Modified.sequence":"_EVDIGIPDATGR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":621.82104,"Charge":2,"m.z":621.81987,"Mass":1241.62518,"Uncalibrated...Calibrated.m.z..ppm.":1.3646,"Uncalibrated...Calibrated.m.z..Da.":0.00085,"Mass.error..ppm.":0.45093,"Mass.error..Da.":0.00028,"Uncalibrated.mass.error..ppm.":1.8155,"Uncalibrated.mass.error..Da.":0.00113,"Max.intensity.m.z.0":621.81994,"Retention.time":11.733,"Retention.length":0.07981,"Calibrated.retention.time":11.733,"Calibrated.retention.time.start":11.688,"Calibrated.retention.time.finish":11.768,"Retention.time.calibration":0,"Number.of.data.points":14,"Number.of.scans":7,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00018,"MS.MS.count":1,"MS.MS.scan.number":11308,"Score":95.401,"Delta.score":73.488,"Combinatorics":1,"Intensity":23217000,"Reverse":"","Potential.contaminant":"","id":36013,"Protein.group.IDs":"912","Peptide.ID":2834,"Mod..peptide.ID":3014,"MS.MS.IDs":"36655","Best.MS.MS":36655,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"FALGNSNPSALR","Length":12,"Modifications":"Unmodified","Modified.sequence":"_FALGNSNPSALR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":623.82971,"Charge":2,"m.z":623.83057,"Mass":1245.64658,"Uncalibrated...Calibrated.m.z..ppm.":0.46615,"Uncalibrated...Calibrated.m.z..Da.":0.00029,"Mass.error..ppm.":-0.73901,"Mass.error..Da.":-0.00046,"Uncalibrated.mass.error..ppm.":-0.27286,"Uncalibrated.mass.error..Da.":-0.00017,"Max.intensity.m.z.0":623.83021,"Retention.time":10.633,"Retention.length":0.13033,"Calibrated.retention.time":10.633,"Calibrated.retention.time.start":10.537,"Calibrated.retention.time.finish":10.668,"Retention.time.calibration":0,"Number.of.data.points":23,"Number.of.scans":12,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.4772e-08,"MS.MS.count":1,"MS.MS.scan.number":9876,"Score":126.76,"Delta.score":99.356,"Combinatorics":1,"Intensity":22033000,"Reverse":"","Potential.contaminant":"","id":37180,"Protein.group.IDs":"912","Peptide.ID":2942,"Mod..peptide.ID":3132,"MS.MS.IDs":"37833","Best.MS.MS":37833,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"FGLSPSK","Length":7,"Modifications":"Phospho (STY)","Modified.sequence":"_FGLS(Phospho (STY))PSK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"FGLS(0.981)PS(0.019)K","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"FGLS(17)PS(-17)K","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_02","Experiment":"H100_Y25_02","MS.MS.m.z":408.19019,"Charge":2,"m.z":408.18859,"Mass":814.36262,"Uncalibrated...Calibrated.m.z..ppm.":4.234,"Uncalibrated...Calibrated.m.z..Da.":0.00173,"Mass.error..ppm.":0.22152,"Mass.error..Da.":0.00009,"Uncalibrated.mass.error..ppm.":4.4555,"Uncalibrated.mass.error..Da.":0.00182,"Max.intensity.m.z.0":408.18852,"Retention.time":9.2974,"Retention.length":0.16217,"Calibrated.retention.time":9.2974,"Calibrated.retention.time.start":9.2028,"Calibrated.retention.time.finish":9.365,"Retention.time.calibration":0,"Number.of.data.points":33,"Number.of.scans":15,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.01109,"MS.MS.count":1,"MS.MS.scan.number":8013,"Score":57.149,"Delta.score":26.259,"Combinatorics":2,"Intensity":9152900,"Reverse":"","Potential.contaminant":"","id":38370,"Protein.group.IDs":"912","Peptide.ID":3060,"Mod..peptide.ID":3252,"MS.MS.IDs":"39039","Best.MS.MS":39039,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"1704"}
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{"Sequence":"GDHFVVR","Length":7,"Modifications":"Unmodified","Modified.sequence":"_GDHFVVR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":415.21939,"Charge":2,"m.z":415.2194,"Mass":828.42424,"Uncalibrated...Calibrated.m.z..ppm.":0.29635,"Uncalibrated...Calibrated.m.z..Da.":0.00012,"Mass.error..ppm.":-0.45957,"Mass.error..Da.":-0.00019,"Uncalibrated.mass.error..ppm.":-0.16322,"Uncalibrated.mass.error..Da.":-0.00007,"Max.intensity.m.z.0":415.21907,"Retention.time":6.2534,"Retention.length":0.05908,"Calibrated.retention.time":6.2534,"Calibrated.retention.time.start":6.228,"Calibrated.retention.time.finish":6.287,"Retention.time.calibration":0,"Number.of.data.points":12,"Number.of.scans":5,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.0089,"MS.MS.count":1,"MS.MS.scan.number":4142,"Score":121.29,"Delta.score":85.997,"Combinatorics":1,"Intensity":40409000,"Reverse":"","Potential.contaminant":"","id":41839,"Protein.group.IDs":"912","Peptide.ID":3396,"Mod..peptide.ID":3603,"MS.MS.IDs":"42526","Best.MS.MS":42526,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"GHRIEEVPELPLVVEDK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_GHRIEEVPELPLVVEDK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_02","Experiment":"H100_Y25_02","MS.MS.m.z":653.69238,"Charge":3,"m.z":653.68971,"Mass":1958.04729,"Uncalibrated...Calibrated.m.z..ppm.":4.3315,"Uncalibrated...Calibrated.m.z..Da.":0.00283,"Mass.error..ppm.":0.3892,"Mass.error..Da.":0.00025,"Uncalibrated.mass.error..ppm.":4.7207,"Uncalibrated.mass.error..Da.":0.00309,"Max.intensity.m.z.0":653.69009,"Retention.time":13.214,"Retention.length":0.11044,"Calibrated.retention.time":13.214,"Calibrated.retention.time.start":13.132,"Calibrated.retention.time.finish":13.243,"Retention.time.calibration":0,"Number.of.data.points":27,"Number.of.scans":11,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.0046,"MS.MS.count":1,"MS.MS.scan.number":12942,"Score":27.753,"Delta.score":25.471,"Combinatorics":1,"Intensity":2136800,"Reverse":"","Potential.contaminant":"","id":43560,"Protein.group.IDs":"1276","Peptide.ID":3540,"Mod..peptide.ID":3751,"MS.MS.IDs":"44260","Best.MS.MS":44260,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"GHRIEEVPELPLVVEDK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_GHRIEEVPELPLVVEDK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_03","Experiment":"H100_Y25_03","MS.MS.m.z":653.69397,"Charge":3,"m.z":653.68971,"Mass":1958.04729,"Uncalibrated...Calibrated.m.z..ppm.":5.4208,"Uncalibrated...Calibrated.m.z..Da.":0.00354,"Mass.error..ppm.":0.37045,"Mass.error..Da.":0.00024,"Uncalibrated.mass.error..ppm.":5.7912,"Uncalibrated.mass.error..Da.":0.00379,"Max.intensity.m.z.0":653.68992,"Retention.time":13.237,"Retention.length":0.11589,"Calibrated.retention.time":13.237,"Calibrated.retention.time.start":13.16,"Calibrated.retention.time.finish":13.276,"Retention.time.calibration":0,"Number.of.data.points":30,"Number.of.scans":11,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.01915,"MS.MS.count":1,"MS.MS.scan.number":13030,"Score":21.948,"Delta.score":19.665,"Combinatorics":1,"Intensity":2303000,"Reverse":"","Potential.contaminant":"","id":43561,"Protein.group.IDs":"1276","Peptide.ID":3540,"Mod..peptide.ID":3751,"MS.MS.IDs":"44261","Best.MS.MS":44261,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
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{"Sequence":"GHRIEEVPELPLVVEDK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_GHRIEEVPELPLVVEDK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y50_05","Experiment":"H100_Y50_05","MS.MS.m.z":653.6897,"Charge":3,"m.z":653.68971,"Mass":1958.04729,"Retention.time":13.341,"Retention.length":1,"Calibrated.retention.time":13.341,"Calibrated.retention.time.start":12.841,"Calibrated.retention.time.finish":13.841,"Retention.time.calibration":0,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00363,"MS.MS.count":1,"MS.MS.scan.number":13215,"Score":33.835,"Delta.score":31.88,"Combinatorics":1,"Reverse":"","Potential.contaminant":"","id":43563,"Protein.group.IDs":"1276","Peptide.ID":3540,"Mod..peptide.ID":3751,"MS.MS.IDs":"44263","Best.MS.MS":44263,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"GHRIEEVPELPLVVEDK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_GHRIEEVPELPLVVEDK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-SECPEP","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_06","Experiment":"H100_Y150_06","MS.MS.m.z":653.30194,"Charge":3,"m.z":653.68971,"Mass":1958.04729,"Uncalibrated...Calibrated.m.z..ppm.":5.1107,"Uncalibrated...Calibrated.m.z..Da.":0.00334,"Mass.error..ppm.":-0.37812,"Mass.error..Da.":-0.00025,"Uncalibrated.mass.error..ppm.":4.7326,"Uncalibrated.mass.error..Da.":0.00309,"Max.intensity.m.z.0":653.68998,"Retention.time":13.798,"Retention.length":0.09168,"Calibrated.retention.time":13.798,"Calibrated.retention.time.start":13.766,"Calibrated.retention.time.finish":13.857,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":8,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.02763,"MS.MS.count":1,"MS.MS.scan.number":13508,"Score":22.988,"Delta.score":21.073,"Combinatorics":1,"Intensity":3533400,"Reverse":"","Potential.contaminant":"","id":43564,"Protein.group.IDs":"1276","Peptide.ID":3540,"Mod..peptide.ID":3751,"MS.MS.IDs":"44264","Best.MS.MS":44264,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"GVLFYGPPGTGK","Length":12,"Modifications":"Unmodified","Modified.sequence":"_GVLFYGPPGTGK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":596.82251,"Charge":2,"m.z":596.82168,"Mass":1191.62881,"Uncalibrated...Calibrated.m.z..ppm.":1.3589,"Uncalibrated...Calibrated.m.z..Da.":0.00081,"Mass.error..ppm.":0.46095,"Mass.error..Da.":0.00028,"Uncalibrated.mass.error..ppm.":1.8199,"Uncalibrated.mass.error..Da.":0.00109,"Max.intensity.m.z.0":596.82186,"Retention.time":12.337,"Retention.length":0.13042,"Calibrated.retention.time":12.337,"Calibrated.retention.time.start":12.28,"Calibrated.retention.time.finish":12.411,"Retention.time.calibration":0,"Number.of.data.points":29,"Number.of.scans":12,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00834,"MS.MS.count":1,"MS.MS.scan.number":12083,"Score":62.408,"Delta.score":55.837,"Combinatorics":1,"Intensity":29033000,"Reverse":"","Potential.contaminant":"","id":48211,"Protein.group.IDs":"912","Peptide.ID":3968,"Mod..peptide.ID":4184,"MS.MS.IDs":"48951","Best.MS.MS":48951,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
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{"Sequence":"KSPIINESR","Length":9,"Modifications":"Phospho (STY)","Modified.sequence":"_KS(Phospho (STY))PIINESR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"KS(1)PIINESR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"KS(46)PIINES(-46)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_06","Experiment":"H100_Y200_06","MS.MS.m.z":562.28119,"Charge":2,"m.z":562.279,"Mass":1122.54344,"Uncalibrated...Calibrated.m.z..ppm.":3.7691,"Uncalibrated...Calibrated.m.z..Da.":0.00212,"Mass.error..ppm.":0.4839,"Mass.error..Da.":0.00027,"Uncalibrated.mass.error..ppm.":4.253,"Uncalibrated.mass.error..Da.":0.00239,"Max.intensity.m.z.0":562.27946,"Retention.time":5.521,"Retention.length":0.20813,"Calibrated.retention.time":5.521,"Calibrated.retention.time.start":5.3931,"Calibrated.retention.time.finish":5.6013,"Retention.time.calibration":0,"Number.of.data.points":26,"Number.of.scans":20,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00066,"MS.MS.count":1,"MS.MS.scan.number":2834,"Score":63.062,"Delta.score":31.95,"Combinatorics":2,"Intensity":49578000,"Reverse":"","Potential.contaminant":"","id":63008,"Protein.group.IDs":"2618","Peptide.ID":5255,"Mod..peptide.ID":5534,"MS.MS.IDs":"64242","Best.MS.MS":64242,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5745"}
{"Sequence":"KSPIINESR","Length":9,"Modifications":"Phospho (STY)","Modified.sequence":"_KS(Phospho (STY))PIINESR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"KS(1)PIINESR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"KS(41)PIINES(-41)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_01","Experiment":"Honly_ind_01","MS.MS.m.z":562.28015,"Charge":2,"m.z":562.279,"Mass":1122.54344,"Uncalibrated...Calibrated.m.z..ppm.":1.3877,"Uncalibrated...Calibrated.m.z..Da.":0.00078,"Mass.error..ppm.":0.29392,"Mass.error..Da.":0.00017,"Uncalibrated.mass.error..ppm.":1.6816,"Uncalibrated.mass.error..Da.":0.00095,"Max.intensity.m.z.0":562.2793,"Retention.time":5.0338,"Retention.length":0.06975,"Calibrated.retention.time":5.0338,"Calibrated.retention.time.start":4.9988,"Calibrated.retention.time.finish":5.0686,"Retention.time.calibration":0,"Number.of.data.points":16,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00168,"MS.MS.count":1,"MS.MS.scan.number":2551,"Score":49.959,"Delta.score":28.959,"Combinatorics":2,"Intensity":67949000,"Reverse":"","Potential.contaminant":"","id":63009,"Protein.group.IDs":"2618","Peptide.ID":5255,"Mod..peptide.ID":5534,"MS.MS.IDs":"64243","Best.MS.MS":64243,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5745"}
{"Sequence":"KSPIINESR","Length":9,"Modifications":"Phospho (STY)","Modified.sequence":"_KS(Phospho (STY))PIINESR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"KS(1)PIINESR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"KS(52)PIINES(-52)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Honly_ind_02","Experiment":"Honly_ind_02","MS.MS.m.z":562.28076,"Charge":2,"m.z":562.279,"Mass":1122.54344,"Uncalibrated...Calibrated.m.z..ppm.":0.98596,"Uncalibrated...Calibrated.m.z..Da.":0.00055,"Mass.error..ppm.":0.38099,"Mass.error..Da.":0.00021,"Uncalibrated.mass.error..ppm.":1.3669,"Uncalibrated.mass.error..Da.":0.00077,"Max.intensity.m.z.0":562.27931,"Retention.time":4.9375,"Retention.length":0.1393,"Calibrated.retention.time":4.9375,"Calibrated.retention.time.start":4.8329,"Calibrated.retention.time.finish":4.9722,"Retention.time.calibration":0,"Number.of.data.points":26,"Number.of.scans":13,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00049,"MS.MS.count":1,"MS.MS.scan.number":2437,"Score":82.578,"Delta.score":45.803,"Combinatorics":2,"Intensity":85171000,"Reverse":"","Potential.contaminant":"","id":63010,"Protein.group.IDs":"2618","Peptide.ID":5255,"Mod..peptide.ID":5534,"MS.MS.IDs":"64244","Best.MS.MS":64244,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5745"}
{"Sequence":"LAYINPDLALEEK","Length":13,"Modifications":"Unmodified","Modified.sequence":"_LAYINPDLALEEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P31948","Leading.proteins":"sp|P31948|STIP1_HUMANStress-induced-phosphoprotein1OS=Homosapiens(Human)OX=9606GN=STIP1PE=1SV=1","Leading.razor.protein":"sp|P31948|STIP1_HUMANStress-induced-phosphoprotein1OS=Homosapiens(Human)OX=9606GN=STIP1PE=1SV=1","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_06","Experiment":"H100_Y25_06","MS.MS.m.z":744.90277,"Charge":2,"m.z":744.90086,"Mass":1487.78716,"Uncalibrated...Calibrated.m.z..ppm.":5.2427,"Uncalibrated...Calibrated.m.z..Da.":0.00391,"Mass.error..ppm.":0.80406,"Mass.error..Da.":0.0006,"Uncalibrated.mass.error..ppm.":6.0467,"Uncalibrated.mass.error..Da.":0.0045,"Max.intensity.m.z.0":744.90082,"Retention.time":15.219,"Retention.length":0.05302,"Calibrated.retention.time":15.219,"Calibrated.retention.time.start":15.189,"Calibrated.retention.time.finish":15.242,"Retention.time.calibration":0,"Number.of.data.points":12,"Number.of.scans":7,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.02421,"MS.MS.count":1,"MS.MS.scan.number":15000,"Score":36.638,"Delta.score":32.734,"Combinatorics":1,"Intensity":1620800,"Reverse":"","Potential.contaminant":"","id":64805,"Protein.group.IDs":"1021","Peptide.ID":5425,"Mod..peptide.ID":5721,"MS.MS.IDs":"66047","Best.MS.MS":66047,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"LDQLIYVPLPDENAR","Length":15,"Modifications":"Unmodified","Modified.sequence":"_LDQLIYVPLPDENAR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":878.46838,"Charge":2,"m.z":878.46743,"Mass":1754.9203,"Uncalibrated...Calibrated.m.z..ppm.":2.6737,"Uncalibrated...Calibrated.m.z..Da.":0.00235,"Mass.error..ppm.":-0.6484,"Mass.error..Da.":-0.00057,"Uncalibrated.mass.error..ppm.":2.0253,"Uncalibrated.mass.error..Da.":0.00178,"Max.intensity.m.z.0":878.46696,"Retention.time":16.755,"Retention.length":0.07036,"Calibrated.retention.time":16.755,"Calibrated.retention.time.start":16.722,"Calibrated.retention.time.finish":16.792,"Retention.time.calibration":0,"Number.of.data.points":17,"Number.of.scans":6,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00316,"MS.MS.count":1,"MS.MS.scan.number":17781,"Score":48.477,"Delta.score":31.108,"Combinatorics":1,"Intensity":11070000,"Reverse":"","Potential.contaminant":"","id":65322,"Protein.group.IDs":"912","Peptide.ID":5481,"Mod..peptide.ID":5777,"MS.MS.IDs":"66567","Best.MS.MS":66567,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"LELFRGDTVLVK","Length":12,"Modifications":"Unmodified","Modified.sequence":"_LELFRGDTVLVK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":463.94232,"Charge":3,"m.z":463.94153,"Mass":1388.80275,"Uncalibrated...Calibrated.m.z..ppm.":1.3777,"Uncalibrated...Calibrated.m.z..Da.":0.00064,"Mass.error..ppm.":-1.2597,"Mass.error..Da.":-0.00058,"Uncalibrated.mass.error..ppm.":0.11794,"Uncalibrated.mass.error..Da.":0.00005,"Max.intensity.m.z.0":463.94101,"Retention.time":13.495,"Retention.length":0.08057,"Calibrated.retention.time":13.495,"Calibrated.retention.time.start":13.447,"Calibrated.retention.time.finish":13.527,"Retention.time.calibration":0,"Number.of.data.points":20,"Number.of.scans":7,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00056,"MS.MS.count":1,"MS.MS.scan.number":13569,"Score":51.888,"Delta.score":19.154,"Combinatorics":1,"Intensity":20883000,"Reverse":"","Potential.contaminant":"","id":66395,"Protein.group.IDs":"912","Peptide.ID":5564,"Mod..peptide.ID":5864,"MS.MS.IDs":"67652","Best.MS.MS":67652,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"LGDLVTIHPCPDIK","Length":14,"Modifications":"Unmodified","Modified.sequence":"_LGDLVTIHPCPDIK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":526.61841,"Charge":3,"m.z":526.61671,"Mass":1576.82831,"Uncalibrated...Calibrated.m.z..ppm.":2.6006,"Uncalibrated...Calibrated.m.z..Da.":0.00137,"Mass.error..ppm.":-0.42808,"Mass.error..Da.":-0.00023,"Uncalibrated.mass.error..ppm.":2.1726,"Uncalibrated.mass.error..Da.":0.00114,"Max.intensity.m.z.0":526.61664,"Retention.time":12.044,"Retention.length":0.09077,"Calibrated.retention.time":12.044,"Calibrated.retention.time.start":11.988,"Calibrated.retention.time.finish":12.079,"Retention.time.calibration":0,"Number.of.data.points":29,"Number.of.scans":8,"Number.of.isotopic.peaks":5,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00001,"MS.MS.count":1,"MS.MS.scan.number":11696,"Score":73.464,"Delta.score":57.699,"Combinatorics":1,"Intensity":37925000,"Reverse":"","Potential.contaminant":"","id":67697,"Protein.group.IDs":"912","Peptide.ID":5664,"Mod..peptide.ID":5964,"MS.MS.IDs":"68968","Best.MS.MS":68968,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"LLVAFGNK","Length":8,"Modifications":"Unmodified","Modified.sequence":"_LLVAFGNK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":431.26422,"Charge":2,"m.z":431.26327,"Mass":860.51199,"Uncalibrated...Calibrated.m.z..ppm.":2.1195,"Uncalibrated...Calibrated.m.z..Da.":0.00091,"Mass.error..ppm.":-0.02284,"Mass.error..Da.":-9.8505e-06,"Uncalibrated.mass.error..ppm.":2.0967,"Uncalibrated.mass.error..Da.":0.0009,"Max.intensity.m.z.0":431.26317,"Retention.time":11.586,"Retention.length":0.09064,"Calibrated.retention.time":11.586,"Calibrated.retention.time.start":11.54,"Calibrated.retention.time.finish":11.631,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":8,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.01418,"MS.MS.count":1,"MS.MS.scan.number":11102,"Score":78.616,"Delta.score":40.482,"Combinatorics":1,"Intensity":13669000,"Reverse":"","Potential.contaminant":"","id":70766,"Protein.group.IDs":"516","Peptide.ID":5946,"Mod..peptide.ID":6255,"MS.MS.IDs":"72050","Best.MS.MS":72050,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"LLVAFGNK","Length":8,"Modifications":"Unmodified","Modified.sequence":"_LLVAFGNK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":431.2637,"Charge":2,"m.z":431.26327,"Mass":860.51199,"Uncalibrated...Calibrated.m.z..ppm.":1.645,"Uncalibrated...Calibrated.m.z..Da.":0.00071,"Mass.error..ppm.":-0.35817,"Mass.error..Da.":-0.00015,"Uncalibrated.mass.error..ppm.":1.2868,"Uncalibrated.mass.error..Da.":0.00055,"Max.intensity.m.z.0":431.26307,"Retention.time":11.573,"Retention.length":0.10042,"Calibrated.retention.time":11.573,"Calibrated.retention.time.start":11.517,"Calibrated.retention.time.finish":11.618,"Retention.time.calibration":0,"Number.of.data.points":22,"Number.of.scans":9,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.01277,"MS.MS.count":1,"MS.MS.scan.number":11086,"Score":101.21,"Delta.score":58.088,"Combinatorics":1,"Intensity":34245000,"Reverse":"","Potential.contaminant":"","id":70767,"Protein.group.IDs":"516","Peptide.ID":5946,"Mod..peptide.ID":6255,"MS.MS.IDs":"72051","Best.MS.MS":72051,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"NAPAIIFIDEIDSIAPK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_NAPAIIFIDEIDSIAPK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":609.66888,"Charge":3,"m.z":609.66813,"Mass":1825.98257,"Uncalibrated...Calibrated.m.z..ppm.":1.9884,"Uncalibrated...Calibrated.m.z..Da.":0.00121,"Mass.error..ppm.":0.44535,"Mass.error..Da.":0.00027,"Uncalibrated.mass.error..ppm.":2.4337,"Uncalibrated.mass.error..Da.":0.00148,"Max.intensity.m.z.0":610.00326,"Retention.time":18.451,"Retention.length":0.09159,"Calibrated.retention.time":18.451,"Calibrated.retention.time.start":18.385,"Calibrated.retention.time.finish":18.476,"Retention.time.calibration":0,"Number.of.data.points":13,"Number.of.scans":8,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.02199,"MS.MS.count":1,"MS.MS.scan.number":19895,"Score":12.203,"Delta.score":10.344,"Combinatorics":1,"Intensity":3838900,"Reverse":"","Potential.contaminant":"","id":79696,"Protein.group.IDs":"912","Peptide.ID":6720,"Mod..peptide.ID":7153,"MS.MS.IDs":"81054","Best.MS.MS":81054,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"NAPAIIFIDEIDSIAPK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_NAPAIIFIDEIDSIAPK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":913.99908,"Charge":2,"m.z":913.99856,"Mass":1825.98257,"Uncalibrated...Calibrated.m.z..ppm.":1.6114,"Uncalibrated...Calibrated.m.z..Da.":0.00147,"Mass.error..ppm.":0.27928,"Mass.error..Da.":0.00026,"Uncalibrated.mass.error..ppm.":1.8907,"Uncalibrated.mass.error..Da.":0.00173,"Max.intensity.m.z.0":913.99892,"Retention.time":18.451,"Retention.length":0.09159,"Calibrated.retention.time":18.451,"Calibrated.retention.time.start":18.385,"Calibrated.retention.time.finish":18.476,"Retention.time.calibration":0,"Number.of.data.points":20,"Number.of.scans":8,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00003,"MS.MS.count":1,"MS.MS.scan.number":19909,"Score":59.281,"Delta.score":55.477,"Combinatorics":1,"Intensity":4577300,"Reverse":"","Potential.contaminant":"","id":79697,"Protein.group.IDs":"912","Peptide.ID":6720,"Mod..peptide.ID":7153,"MS.MS.IDs":"81055","Best.MS.MS":81055,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"NAPAIIFIDEIDSIAPK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_NAPAIIFIDEIDSIAPK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":609.67023,"Charge":3,"m.z":609.66813,"Mass":1825.98257,"Uncalibrated...Calibrated.m.z..ppm.":1.6842,"Uncalibrated...Calibrated.m.z..Da.":0.00103,"Mass.error..ppm.":0.31958,"Mass.error..Da.":0.00019,"Uncalibrated.mass.error..ppm.":2.0038,"Uncalibrated.mass.error..Da.":0.00122,"Max.intensity.m.z.0":609.66848,"Retention.time":18.439,"Retention.length":0.11193,"Calibrated.retention.time":18.439,"Calibrated.retention.time.start":18.371,"Calibrated.retention.time.finish":18.483,"Retention.time.calibration":0,"Number.of.data.points":28,"Number.of.scans":10,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00115,"MS.MS.count":1,"MS.MS.scan.number":19923,"Score":31.6,"Delta.score":25.236,"Combinatorics":1,"Intensity":8970600,"Reverse":"","Potential.contaminant":"","id":79698,"Protein.group.IDs":"912","Peptide.ID":6720,"Mod..peptide.ID":7153,"MS.MS.IDs":"81056","Best.MS.MS":81056,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"NAPAIIFIDEIDSIAPK","Length":17,"Modifications":"Unmodified","Modified.sequence":"_NAPAIIFIDEIDSIAPK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":913.99969,"Charge":2,"m.z":913.99856,"Mass":1825.98257,"Uncalibrated...Calibrated.m.z..ppm.":1.2365,"Uncalibrated...Calibrated.m.z..Da.":0.00113,"Mass.error..ppm.":1.4177,"Mass.error..Da.":0.0013,"Uncalibrated.mass.error..ppm.":2.6542,"Uncalibrated.mass.error..Da.":0.00243,"Max.intensity.m.z.0":913.99901,"Retention.time":18.445,"Retention.length":0.13227,"Calibrated.retention.time":18.445,"Calibrated.retention.time.start":18.371,"Calibrated.retention.time.finish":18.503,"Retention.time.calibration":0,"Number.of.data.points":27,"Number.of.scans":12,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.3836e-08,"MS.MS.count":1,"MS.MS.scan.number":19926,"Score":79.311,"Delta.score":72.806,"Combinatorics":1,"Intensity":8507000,"Reverse":"","Potential.contaminant":"","id":79699,"Protein.group.IDs":"912","Peptide.ID":6720,"Mod..peptide.ID":7153,"MS.MS.IDs":"81057","Best.MS.MS":81057,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"NIPGITLLNVSK","Length":12,"Modifications":"Unmodified","Modified.sequence":"_NIPGITLLNVSK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_04","Experiment":"H100_Y25_04","MS.MS.m.z":634.88513,"Charge":2,"m.z":634.88227,"Mass":1267.74999,"Uncalibrated...Calibrated.m.z..ppm.":4.8403,"Uncalibrated...Calibrated.m.z..Da.":0.00307,"Mass.error..ppm.":0.54472,"Mass.error..Da.":0.00035,"Uncalibrated.mass.error..ppm.":5.385,"Uncalibrated.mass.error..Da.":0.00342,"Max.intensity.m.z.0":634.88242,"Retention.time":15.793,"Retention.length":0.11235,"Calibrated.retention.time":15.793,"Calibrated.retention.time.start":15.739,"Calibrated.retention.time.finish":15.851,"Retention.time.calibration":0,"Number.of.data.points":33,"Number.of.scans":18,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.02504,"MS.MS.count":1,"MS.MS.scan.number":15975,"Score":37.555,"Delta.score":26.5,"Combinatorics":1,"Intensity":1413000,"Reverse":"","Potential.contaminant":"","id":82134,"Protein.group.IDs":"1276","Peptide.ID":6925,"Mod..peptide.ID":7379,"MS.MS.IDs":"83510","Best.MS.MS":83510,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"NIPGITLLNVSK","Length":12,"Modifications":"Unmodified","Modified.sequence":"_NIPGITLLNVSK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Leading.razor.protein":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_05","Experiment":"H100_Y25_05","MS.MS.m.z":634.88623,"Charge":2,"m.z":634.88227,"Mass":1267.74999,"Uncalibrated...Calibrated.m.z..ppm.":5.4523,"Uncalibrated...Calibrated.m.z..Da.":0.00346,"Mass.error..ppm.":0.1395,"Mass.error..Da.":0.00009,"Uncalibrated.mass.error..ppm.":5.5918,"Uncalibrated.mass.error..Da.":0.00355,"Max.intensity.m.z.0":634.88217,"Retention.time":15.825,"Retention.length":0.1209,"Calibrated.retention.time":15.825,"Calibrated.retention.time.start":15.773,"Calibrated.retention.time.finish":15.894,"Retention.time.calibration":0,"Number.of.data.points":39,"Number.of.scans":17,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.03527,"MS.MS.count":1,"MS.MS.scan.number":16043,"Score":34.302,"Delta.score":23.247,"Combinatorics":1,"Intensity":1856600,"Reverse":"","Potential.contaminant":"","id":82135,"Protein.group.IDs":"1276","Peptide.ID":6925,"Mod..peptide.ID":7379,"MS.MS.IDs":"83511","Best.MS.MS":83511,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"NKPDPAIVEK","Length":10,"Modifications":"Unmodified","Modified.sequence":"_NKPDPAIVEK_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P09938","Leading.proteins":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Leading.razor.protein":"sp|P09938|RIR2_YEASTRibonucleoside-diphosphatereductasesmallchain1OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RNR2PE=1SV=2","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":370.87668,"Charge":3,"m.z":370.87663,"Mass":1109.60807,"Uncalibrated...Calibrated.m.z..ppm.":0.12013,"Uncalibrated...Calibrated.m.z..Da.":0.00004,"Mass.error..ppm.":0.57971,"Mass.error..Da.":0.00022,"Uncalibrated.mass.error..ppm.":0.69984,"Uncalibrated.mass.error..Da.":0.00026,"Max.intensity.m.z.0":370.87677,"Retention.time":5.3777,"Retention.length":0.23745,"Calibrated.retention.time":5.3777,"Calibrated.retention.time.start":5.288,"Calibrated.retention.time.finish":5.5255,"Retention.time.calibration":0,"Number.of.data.points":53,"Number.of.scans":23,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.02172,"MS.MS.count":1,"MS.MS.scan.number":2965,"Score":28.532,"Delta.score":14.786,"Combinatorics":1,"Intensity":18757000,"Reverse":"","Potential.contaminant":"","id":82339,"Protein.group.IDs":"516","Peptide.ID":6943,"Mod..peptide.ID":7400,"MS.MS.IDs":"83715","Best.MS.MS":83715,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"PLLDASGVDPR","Length":11,"Modifications":"Unmodified","Modified.sequence":"_PLLDASGVDPR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":570.30786,"Charge":2,"m.z":570.30639,"Mass":1138.59824,"Uncalibrated...Calibrated.m.z..ppm.":1.1661,"Uncalibrated...Calibrated.m.z..Da.":0.00067,"Mass.error..ppm.":3.2138,"Mass.error..Da.":0.00183,"Uncalibrated.mass.error..ppm.":4.3799,"Uncalibrated.mass.error..Da.":0.0025,"Max.intensity.m.z.0":570.30769,"Retention.time":10.52,"Retention.length":0.12966,"Calibrated.retention.time":10.52,"Calibrated.retention.time.start":10.458,"Calibrated.retention.time.finish":10.587,"Retention.time.calibration":0,"Number.of.data.points":29,"Number.of.scans":12,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00165,"MS.MS.count":1,"MS.MS.scan.number":9746,"Score":68.536,"Delta.score":39.632,"Combinatorics":1,"Intensity":24721000,"Reverse":"","Potential.contaminant":"","id":86855,"Protein.group.IDs":"912","Peptide.ID":7401,"Mod..peptide.ID":7864,"MS.MS.IDs":"88283","Best.MS.MS":88283,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
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{"Sequence":"RSVSDAELR","Length":9,"Modifications":"Phospho (STY)","Modified.sequence":"_RSVS(Phospho (STY))DAELR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"RS(0.051)VS(0.949)DAELR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"RS(-13)VS(13)DAELR","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_02","Experiment":"H100_Y100_02","MS.MS.m.z":556.75989,"Charge":2,"m.z":556.75843,"Mass":1111.5023,"Uncalibrated...Calibrated.m.z..ppm.":2.1231,"Uncalibrated...Calibrated.m.z..Da.":0.00118,"Mass.error..ppm.":0.70106,"Mass.error..Da.":0.00039,"Uncalibrated.mass.error..ppm.":2.8242,"Uncalibrated.mass.error..Da.":0.00157,"Max.intensity.m.z.0":556.75907,"Retention.time":5.5515,"Retention.length":0.19925,"Calibrated.retention.time":5.5515,"Calibrated.retention.time.start":5.4911,"Calibrated.retention.time.finish":5.6904,"Retention.time.calibration":0,"Number.of.data.points":24,"Number.of.scans":12,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00182,"MS.MS.count":1,"MS.MS.scan.number":3177,"Score":59.884,"Delta.score":42.642,"Combinatorics":2,"Intensity":43510000,"Reverse":"","Potential.contaminant":"","id":96562,"Protein.group.IDs":"912","Peptide.ID":8279,"Mod..peptide.ID":8763,"MS.MS.IDs":"98052","Best.MS.MS":98052,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"1705;1706"}
{"Sequence":"RSVSDAELR","Length":9,"Modifications":"Phospho (STY)","Modified.sequence":"_RSVS(Phospho (STY))DAELR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"RS(0.039)VS(0.961)DAELR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"RS(-14)VS(14)DAELR","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_01","Experiment":"H100_Y150_01","MS.MS.m.z":556.76025,"Charge":2,"m.z":556.75843,"Mass":1111.5023,"Uncalibrated...Calibrated.m.z..ppm.":2.5816,"Uncalibrated...Calibrated.m.z..Da.":0.00144,"Mass.error..ppm.":0.37352,"Mass.error..Da.":0.00021,"Uncalibrated.mass.error..ppm.":2.9551,"Uncalibrated.mass.error..Da.":0.00165,"Max.intensity.m.z.0":556.75887,"Retention.time":5.502,"Retention.length":0.21916,"Calibrated.retention.time":5.502,"Calibrated.retention.time.start":5.4321,"Calibrated.retention.time.finish":5.6513,"Retention.time.calibration":0,"Number.of.data.points":25,"Number.of.scans":10,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00078,"MS.MS.count":1,"MS.MS.scan.number":3105,"Score":68.751,"Delta.score":39.738,"Combinatorics":2,"Intensity":52479000,"Reverse":"","Potential.contaminant":"","id":96563,"Protein.group.IDs":"912","Peptide.ID":8279,"Mod..peptide.ID":8763,"MS.MS.IDs":"98053","Best.MS.MS":98053,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"1705;1706"}
{"Sequence":"RSVSDAELR","Length":9,"Modifications":"Phospho (STY)","Modified.sequence":"_RSVS(Phospho (STY))DAELR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"RS(0.172)VS(0.828)DAELR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"RS(-6.8)VS(6.8)DAELR","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_02","Experiment":"H100_Y150_02","MS.MS.m.z":556.76068,"Charge":2,"m.z":556.75843,"Mass":1111.5023,"Uncalibrated...Calibrated.m.z..ppm.":3.0424,"Uncalibrated...Calibrated.m.z..Da.":0.00169,"Mass.error..ppm.":0.43276,"Mass.error..Da.":0.00024,"Uncalibrated.mass.error..ppm.":3.4752,"Uncalibrated.mass.error..Da.":0.00193,"Max.intensity.m.z.0":556.75887,"Retention.time":5.5188,"Retention.length":0.2097,"Calibrated.retention.time":5.5188,"Calibrated.retention.time.start":5.451,"Calibrated.retention.time.finish":5.6607,"Retention.time.calibration":0,"Number.of.data.points":31,"Number.of.scans":12,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00224,"MS.MS.count":1,"MS.MS.scan.number":3124,"Score":56.872,"Delta.score":38.914,"Combinatorics":2,"Intensity":52974000,"Reverse":"","Potential.contaminant":"","id":96564,"Protein.group.IDs":"912","Peptide.ID":8279,"Mod..peptide.ID":8763,"MS.MS.IDs":"98054","Best.MS.MS":98054,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"1705;1706"}
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{"Sequence":"RSVSDAELR","Length":9,"Modifications":"Phospho (STY)","Modified.sequence":"_RSVS(Phospho (STY))DAELR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"RS(0.027)VS(0.973)DAELR","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"RS(-16)VS(16)DAELR","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":1,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_01","Experiment":"H100_Y200_01","MS.MS.m.z":556.7597,"Charge":2,"m.z":556.75843,"Mass":1111.5023,"Uncalibrated...Calibrated.m.z..ppm.":2.427,"Uncalibrated...Calibrated.m.z..Da.":0.00135,"Mass.error..ppm.":-0.22796,"Mass.error..Da.":-0.00013,"Uncalibrated.mass.error..ppm.":2.1991,"Uncalibrated.mass.error..Da.":0.00122,"Max.intensity.m.z.0":556.75877,"Retention.time":5.5145,"Retention.length":0.12962,"Calibrated.retention.time":5.5145,"Calibrated.retention.time.start":5.4442,"Calibrated.retention.time.finish":5.5738,"Retention.time.calibration":0,"Number.of.data.points":43,"Number.of.scans":12,"Number.of.isotopic.peaks":6,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00062,"MS.MS.count":1,"MS.MS.scan.number":3120,"Score":75.316,"Delta.score":47.034,"Combinatorics":2,"Intensity":71954000,"Reverse":"","Potential.contaminant":"","id":96566,"Protein.group.IDs":"912","Peptide.ID":8279,"Mod..peptide.ID":8763,"MS.MS.IDs":"98056","Best.MS.MS":98056,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"1705;1706"}
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{"Sequence":"RSVSDAELR","Length":9,"Modifications":"Unmodified","Modified.sequence":"_RSVSDAELR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":1,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":516.77533,"Charge":2,"m.z":516.77526,"Mass":1031.53597,"Uncalibrated...Calibrated.m.z..ppm.":0.60824,"Uncalibrated...Calibrated.m.z..Da.":0.00031,"Mass.error..ppm.":-0.09704,"Mass.error..Da.":-0.00005,"Uncalibrated.mass.error..ppm.":0.51119,"Uncalibrated.mass.error..Da.":0.00026,"Max.intensity.m.z.0":516.77511,"Retention.time":5.1536,"Retention.length":0.06896,"Calibrated.retention.time":5.1536,"Calibrated.retention.time.start":5.12,"Calibrated.retention.time.finish":5.189,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":6,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00071,"MS.MS.count":1,"MS.MS.scan.number":2683,"Score":125.68,"Delta.score":82.138,"Combinatorics":1,"Intensity":79858000,"Reverse":"","Potential.contaminant":"","id":96571,"Protein.group.IDs":"912","Peptide.ID":8279,"Mod..peptide.ID":8764,"MS.MS.IDs":"98061","Best.MS.MS":98061,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"SGQGAFGNMCR","Length":11,"Modifications":"Oxidation (M)","Modified.sequence":"_SGQGAFGNM(Oxidation (M))CR_","Oxidation..M..Probabilities":"SGQGAFGNM(1)CR","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"SGQGAFGNM(58)CR","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5;sp|P10664|RL4A_YEAST60SribosomalproteinL4-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4APE=1SV=4;sp|P49626|RL4B_YEAST60SribosomalproteinL4-BOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4BPE=1SV=2","Leading.razor.protein":"sp|P10664|RL4A_YEAST60SribosomalproteinL4-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4APE=1SV=4","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_02","Experiment":"H100_Y100_02","MS.MS.m.z":601.25287,"Charge":2,"m.z":600.74786,"Mass":1199.48118,"Uncalibrated...Calibrated.m.z..ppm.":2.607,"Uncalibrated...Calibrated.m.z..Da.":0.00157,"Mass.error..ppm.":3.3303,"Mass.error..Da.":0.002,"Uncalibrated.mass.error..ppm.":5.9373,"Uncalibrated.mass.error..Da.":0.00357,"Max.intensity.m.z.0":600.74845,"Retention.time":4.9938,"Retention.length":0.07972,"Calibrated.retention.time":4.9938,"Calibrated.retention.time.start":4.943,"Calibrated.retention.time.finish":5.0228,"Retention.time.calibration":0,"Number.of.data.points":16,"Number.of.scans":7,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00236,"MS.MS.count":1,"MS.MS.scan.number":2469,"Score":58.476,"Delta.score":48.345,"Combinatorics":1,"Intensity":20687000,"Reverse":"","Potential.contaminant":"","id":105202,"Protein.group.IDs":"568;1798;1276","Peptide.ID":8872,"Mod..peptide.ID":9429,"MS.MS.IDs":"106792","Best.MS.MS":106792,"Oxidation..M..site.IDs":"246","Phospho..STY..site.IDs":""}
{"Sequence":"SGQGAFGNMCR","Length":11,"Modifications":"Oxidation (M)","Modified.sequence":"_SGQGAFGNM(Oxidation (M))CR_","Oxidation..M..Probabilities":"SGQGAFGNM(1)CR","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"SGQGAFGNM(44)CR","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5;sp|P10664|RL4A_YEAST60SribosomalproteinL4-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4APE=1SV=4;sp|P49626|RL4B_YEAST60SribosomalproteinL4-BOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4BPE=1SV=2","Leading.razor.protein":"sp|P10664|RL4A_YEAST60SribosomalproteinL4-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4APE=1SV=4","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_03","Experiment":"H100_Y100_03","MS.MS.m.z":600.75061,"Charge":2,"m.z":600.74786,"Mass":1199.48118,"Uncalibrated...Calibrated.m.z..ppm.":3.7224,"Uncalibrated...Calibrated.m.z..Da.":0.00224,"Mass.error..ppm.":2.7413,"Mass.error..Da.":0.00165,"Uncalibrated.mass.error..ppm.":6.4637,"Uncalibrated.mass.error..Da.":0.00388,"Max.intensity.m.z.0":600.74817,"Retention.time":4.9667,"Retention.length":0.07983,"Calibrated.retention.time":4.9667,"Calibrated.retention.time.start":4.9121,"Calibrated.retention.time.finish":4.9919,"Retention.time.calibration":0,"Number.of.data.points":18,"Number.of.scans":7,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00844,"MS.MS.count":1,"MS.MS.scan.number":2435,"Score":43.549,"Delta.score":36.141,"Combinatorics":1,"Intensity":24584000,"Reverse":"","Potential.contaminant":"","id":105203,"Protein.group.IDs":"568;1798;1276","Peptide.ID":8872,"Mod..peptide.ID":9429,"MS.MS.IDs":"106793","Best.MS.MS":106793,"Oxidation..M..site.IDs":"246","Phospho..STY..site.IDs":""}
{"Sequence":"SGQGAFGNMCR","Length":11,"Modifications":"Oxidation (M)","Modified.sequence":"_SGQGAFGNM(Oxidation (M))CR_","Oxidation..M..Probabilities":"SGQGAFGNM(1)CR","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"SGQGAFGNM(58)CR","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P36578","Leading.proteins":"sp|P36578|RL4_HUMAN60SribosomalproteinL4OS=Homosapiens(Human)OX=9606GN=RPL4PE=1SV=5;sp|P10664|RL4A_YEAST60SribosomalproteinL4-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4APE=1SV=4;sp|P49626|RL4B_YEAST60SribosomalproteinL4-BOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4BPE=1SV=2","Leading.razor.protein":"sp|P10664|RL4A_YEAST60SribosomalproteinL4-AOS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=RPL4APE=1SV=4","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y100_04","Experiment":"H100_Y100_04","MS.MS.m.z":600.75,"Charge":2,"m.z":600.74786,"Mass":1199.48118,"Uncalibrated...Calibrated.m.z..ppm.":2.8469,"Uncalibrated...Calibrated.m.z..Da.":0.00171,"Mass.error..ppm.":2.8833,"Mass.error..Da.":0.00173,"Uncalibrated.mass.error..ppm.":5.7302,"Uncalibrated.mass.error..Da.":0.00344,"Max.intensity.m.z.0":600.74815,"Retention.time":4.9664,"Retention.length":0.07949,"Calibrated.retention.time":4.9664,"Calibrated.retention.time.start":4.9133,"Calibrated.retention.time.finish":4.9928,"Retention.time.calibration":0,"Number.of.data.points":19,"Number.of.scans":7,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.00468,"MS.MS.count":1,"MS.MS.scan.number":2430,"Score":58.476,"Delta.score":48.345,"Combinatorics":1,"Intensity":22377000,"Reverse":"","Potential.contaminant":"","id":105204,"Protein.group.IDs":"568;1798;1276","Peptide.ID":8872,"Mod..peptide.ID":9429,"MS.MS.IDs":"106794","Best.MS.MS":106794,"Oxidation..M..site.IDs":"246","Phospho..STY..site.IDs":""}
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{"Sequence":"SPIINESR","Length":8,"Modifications":"Phospho (STY)","Modified.sequence":"_S(Phospho (STY))PIINESR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"S(0.999)PIINES(0.001)R","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"S(33)PIINES(-33)R","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":1,"Missed.cleavages":0,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y25_02","Experiment":"H100_Y25_02","MS.MS.m.z":498.23297,"Charge":2,"m.z":498.23151,"Mass":994.44848,"Uncalibrated...Calibrated.m.z..ppm.":2.5207,"Uncalibrated...Calibrated.m.z..Da.":0.00126,"Mass.error..ppm.":-0.18418,"Mass.error..Da.":-0.00009,"Uncalibrated.mass.error..ppm.":2.3366,"Uncalibrated.mass.error..Da.":0.00116,"Max.intensity.m.z.0":498.23135,"Retention.time":7.1452,"Retention.length":0.15043,"Calibrated.retention.time":7.1452,"Calibrated.retention.time.start":7.0698,"Calibrated.retention.time.finish":7.2202,"Retention.time.calibration":0,"Number.of.data.points":35,"Number.of.scans":14,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.01117,"MS.MS.count":1,"MS.MS.scan.number":5244,"Score":44.89,"Delta.score":25.628,"Combinatorics":2,"Intensity":16402000,"Reverse":"","Potential.contaminant":"","id":112535,"Protein.group.IDs":"2618","Peptide.ID":9444,"Mod..peptide.ID":10041,"MS.MS.IDs":"114210","Best.MS.MS":114210,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5745"}
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{"Sequence":"TATAILR","Length":7,"Modifications":"Unmodified","Modified.sequence":"_TATAILR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_01","Experiment":"Yonly_ind_01","MS.MS.m.z":373.23312,"Charge":2,"m.z":373.23197,"Mass":744.44939,"Uncalibrated...Calibrated.m.z..ppm.":1.0738,"Uncalibrated...Calibrated.m.z..Da.":0.0004,"Mass.error..ppm.":0.40145,"Mass.error..Da.":0.00015,"Uncalibrated.mass.error..ppm.":1.4753,"Uncalibrated.mass.error..Da.":0.00055,"Max.intensity.m.z.0":373.2325,"Retention.time":7.2896,"Retention.length":0.08938,"Calibrated.retention.time":7.2896,"Calibrated.retention.time.start":7.2349,"Calibrated.retention.time.finish":7.3243,"Retention.time.calibration":0,"Number.of.data.points":22,"Number.of.scans":8,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.03472,"MS.MS.count":1,"MS.MS.scan.number":5491,"Score":68.787,"Delta.score":36.835,"Combinatorics":1,"Intensity":24254000,"Reverse":"","Potential.contaminant":"","id":123197,"Protein.group.IDs":"912","Peptide.ID":10334,"Mod..peptide.ID":10972,"MS.MS.IDs":"124966","Best.MS.MS":124966,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
{"Sequence":"TATAILR","Length":7,"Modifications":"Unmodified","Modified.sequence":"_TATAILR_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":373.23236,"Charge":2,"m.z":373.23197,"Mass":744.44939,"Uncalibrated...Calibrated.m.z..ppm.":0.84719,"Uncalibrated...Calibrated.m.z..Da.":0.00032,"Mass.error..ppm.":0.29714,"Mass.error..Da.":0.00011,"Uncalibrated.mass.error..ppm.":1.1443,"Uncalibrated.mass.error..Da.":0.00043,"Max.intensity.m.z.0":373.23206,"Retention.time":7.3521,"Retention.length":0.08927,"Calibrated.retention.time":7.3521,"Calibrated.retention.time.start":7.3048,"Calibrated.retention.time.finish":7.3941,"Retention.time.calibration":0,"Number.of.data.points":19,"Number.of.scans":8,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.0361,"MS.MS.count":1,"MS.MS.scan.number":5558,"Score":89.55,"Delta.score":45.742,"Combinatorics":1,"Intensity":57722000,"Reverse":"","Potential.contaminant":"","id":123198,"Protein.group.IDs":"912","Peptide.ID":10334,"Mod..peptide.ID":10972,"MS.MS.IDs":"124967","Best.MS.MS":124967,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":""}
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{"Sequence":"TRSPSPDDILER","Length":12,"Modifications":"2 Phospho (STY)","Modified.sequence":"_TRS(Phospho (STY))PS(Phospho (STY))PDDILER_","Oxidation..M..Probabilities":"","Phospho..STY..Probabilities":"T(0.481)RS(0.616)PS(0.904)PDDILER","Oxidation..M..Score.Diffs":"","Phospho..STY..Score.Diffs":"T(-1.3)RS(1.3)PS(7.3)PDDILER","Acetyl..Protein.N.term.":0,"Oxidation..M.":0,"Phospho..STY.":2,"Missed.cleavages":1,"Proteins":"Q13523","Leading.proteins":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Leading.razor.protein":"sp|Q13523|PRP4B_HUMANSerine/threonine-proteinkinasePRP4homologOS=Homosapiens(Human)OX=9606GN=PRPF4BPE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_02","Experiment":"H100_Y200_02","MS.MS.m.z":773.31732,"Charge":2,"m.z":773.32093,"Mass":1544.62732,"Uncalibrated...Calibrated.m.z..ppm.":3.0824,"Uncalibrated...Calibrated.m.z..Da.":0.00238,"Mass.error..ppm.":-1.5351,"Mass.error..Da.":-0.00119,"Uncalibrated.mass.error..ppm.":1.5473,"Uncalibrated.mass.error..Da.":0.0012,"Max.intensity.m.z.0":773.31725,"Retention.time":10.779,"Retention.length":0.23138,"Calibrated.retention.time":10.779,"Calibrated.retention.time.start":10.729,"Calibrated.retention.time.finish":10.96,"Retention.time.calibration":0,"Number.of.data.points":27,"Number.of.scans":22,"Number.of.isotopic.peaks":2,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.02969,"MS.MS.count":1,"MS.MS.scan.number":9981,"Score":40.937,"Delta.score":26.529,"Combinatorics":3,"Intensity":17137000,"Reverse":"","Potential.contaminant":"","id":129996,"Protein.group.IDs":"2618","Peptide.ID":10897,"Mod..peptide.ID":11564,"MS.MS.IDs":"131827","Best.MS.MS":131827,"Oxidation..M..site.IDs":"","Phospho..STY..site.IDs":"5750;5751"}
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{"Sequence":"VEGEDVEMTDEGAK","Length":14,"Modifications":"Oxidation (M),Phospho (STY)","Modified.sequence":"_VEGEDVEM(Oxidation (M))T(Phospho (STY))DEGAK_","Oxidation..M..Probabilities":"VEGEDVEM(1)TDEGAK","Phospho..STY..Probabilities":"VEGEDVEMT(1)DEGAK","Oxidation..M..Score.Diffs":"VEGEDVEM(46)TDEGAK","Phospho..STY..Score.Diffs":"VEGEDVEMT(46)DEGAK","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y150_05","Experiment":"H100_Y150_05","MS.MS.m.z":802.80737,"Charge":2,"m.z":802.80531,"Mass":1603.59606,"Uncalibrated...Calibrated.m.z..ppm.":2.9339,"Uncalibrated...Calibrated.m.z..Da.":0.00236,"Mass.error..ppm.":-0.00373,"Mass.error..Da.":-2.9963e-06,"Uncalibrated.mass.error..ppm.":2.9302,"Uncalibrated.mass.error..Da.":0.00235,"Max.intensity.m.z.0":802.80546,"Retention.time":5.9271,"Retention.length":0.06984,"Calibrated.retention.time":5.9271,"Calibrated.retention.time.start":5.8909,"Calibrated.retention.time.finish":5.9607,"Retention.time.calibration":0,"Number.of.data.points":15,"Number.of.scans":6,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":0.0013,"MS.MS.count":1,"MS.MS.scan.number":3419,"Score":45.885,"Delta.score":36.136,"Combinatorics":1,"Intensity":11736000,"Reverse":"","Potential.contaminant":"","id":134535,"Protein.group.IDs":"912","Peptide.ID":11290,"Mod..peptide.ID":11987,"MS.MS.IDs":"136394","Best.MS.MS":136394,"Oxidation..M..site.IDs":"393","Phospho..STY..site.IDs":"8998"}
{"Sequence":"VEGEDVEMTDEGAK","Length":14,"Modifications":"Oxidation (M),Phospho (STY)","Modified.sequence":"_VEGEDVEM(Oxidation (M))T(Phospho (STY))DEGAK_","Oxidation..M..Probabilities":"VEGEDVEM(1)TDEGAK","Phospho..STY..Probabilities":"VEGEDVEMT(1)DEGAK","Oxidation..M..Score.Diffs":"VEGEDVEM(100)TDEGAK","Phospho..STY..Score.Diffs":"VEGEDVEMT(100)DEGAK","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_01","Experiment":"H100_Y200_01","MS.MS.m.z":802.80731,"Charge":2,"m.z":802.80531,"Mass":1603.59606,"Uncalibrated...Calibrated.m.z..ppm.":2.1522,"Uncalibrated...Calibrated.m.z..Da.":0.00173,"Mass.error..ppm.":-0.75415,"Mass.error..Da.":-0.00061,"Uncalibrated.mass.error..ppm.":1.398,"Uncalibrated.mass.error..Da.":0.00112,"Max.intensity.m.z.0":802.80487,"Retention.time":5.3298,"Retention.length":0.0598,"Calibrated.retention.time":5.3298,"Calibrated.retention.time.start":5.3049,"Calibrated.retention.time.finish":5.3647,"Retention.time.calibration":0,"Number.of.data.points":14,"Number.of.scans":5,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":8.5019e-11,"MS.MS.count":1,"MS.MS.scan.number":2906,"Score":102.33,"Delta.score":83.607,"Combinatorics":1,"Intensity":12850000,"Reverse":"","Potential.contaminant":"","id":134536,"Protein.group.IDs":"912","Peptide.ID":11290,"Mod..peptide.ID":11987,"MS.MS.IDs":"136395","Best.MS.MS":136395,"Oxidation..M..site.IDs":"393","Phospho..STY..site.IDs":"8998"}
{"Sequence":"VEGEDVEMTDEGAK","Length":14,"Modifications":"Oxidation (M),Phospho (STY)","Modified.sequence":"_VEGEDVEM(Oxidation (M))T(Phospho (STY))DEGAK_","Oxidation..M..Probabilities":"VEGEDVEM(1)TDEGAK","Phospho..STY..Probabilities":"VEGEDVEMT(1)DEGAK","Oxidation..M..Score.Diffs":"VEGEDVEM(68)TDEGAK","Phospho..STY..Score.Diffs":"VEGEDVEMT(68)DEGAK","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_03","Experiment":"H100_Y200_03","MS.MS.m.z":802.80835,"Charge":2,"m.z":802.80531,"Mass":1603.59606,"Retention.time":5.3578,"Retention.length":1,"Calibrated.retention.time":5.3578,"Calibrated.retention.time.start":4.8578,"Calibrated.retention.time.finish":5.8578,"Retention.time.calibration":0,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.5735e-07,"MS.MS.count":1,"MS.MS.scan.number":2943,"Score":67.866,"Delta.score":49.147,"Combinatorics":1,"Reverse":"","Potential.contaminant":"","id":134537,"Protein.group.IDs":"912","Peptide.ID":11290,"Mod..peptide.ID":11987,"MS.MS.IDs":"136396","Best.MS.MS":136396,"Oxidation..M..site.IDs":"393","Phospho..STY..site.IDs":"8998"}
{"Sequence":"VEGEDVEMTDEGAK","Length":14,"Modifications":"Oxidation (M),Phospho (STY)","Modified.sequence":"_VEGEDVEM(Oxidation (M))T(Phospho (STY))DEGAK_","Oxidation..M..Probabilities":"VEGEDVEM(1)TDEGAK","Phospho..STY..Probabilities":"VEGEDVEMT(1)DEGAK","Oxidation..M..Score.Diffs":"VEGEDVEM(90)TDEGAK","Phospho..STY..Score.Diffs":"VEGEDVEMT(90)DEGAK","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":1,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_H100_Y200_04","Experiment":"H100_Y200_04","MS.MS.m.z":802.80701,"Charge":2,"m.z":802.80531,"Mass":1603.59606,"Uncalibrated...Calibrated.m.z..ppm.":2.1023,"Uncalibrated...Calibrated.m.z..Da.":0.00169,"Mass.error..ppm.":-0.91085,"Mass.error..Da.":-0.00073,"Uncalibrated.mass.error..ppm.":1.1914,"Uncalibrated.mass.error..Da.":0.00096,"Max.intensity.m.z.0":802.80494,"Retention.time":5.3491,"Retention.length":0.06957,"Calibrated.retention.time":5.3491,"Calibrated.retention.time.start":5.3112,"Calibrated.retention.time.finish":5.3808,"Retention.time.calibration":0,"Number.of.data.points":14,"Number.of.scans":6,"Number.of.isotopic.peaks":3,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":3.4116e-09,"MS.MS.count":1,"MS.MS.scan.number":2935,"Score":89.859,"Delta.score":71.139,"Combinatorics":1,"Intensity":15662000,"Reverse":"","Potential.contaminant":"","id":134538,"Protein.group.IDs":"912","Peptide.ID":11290,"Mod..peptide.ID":11987,"MS.MS.IDs":"136397","Best.MS.MS":136397,"Oxidation..M..site.IDs":"393","Phospho..STY..site.IDs":"8998"}
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{"Sequence":"VEGEDVEMTDEGAK","Length":14,"Modifications":"Oxidation (M)","Modified.sequence":"_VEGEDVEM(Oxidation (M))TDEGAK_","Oxidation..M..Probabilities":"VEGEDVEM(1)TDEGAK","Phospho..STY..Probabilities":"","Oxidation..M..Score.Diffs":"VEGEDVEM(120)TDEGAK","Phospho..STY..Score.Diffs":"","Acetyl..Protein.N.term.":0,"Oxidation..M.":1,"Phospho..STY.":0,"Missed.cleavages":0,"Proteins":"P25694","Leading.proteins":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Leading.razor.protein":"sp|P25694|CDC48_YEASTCelldivisioncontrolprotein48OS=Saccharomycescerevisiae(strainATCC204508/S288c)OX=559292GN=CDC48PE=1SV=3","Type":"MULTI-MSMS","Raw.file":"20180810_QE3_nLC3_AH_DDA_Yonly_ind_02","Experiment":"Yonly_ind_02","MS.MS.m.z":762.82343,"Charge":2,"m.z":762.82214,"Mass":1523.62973,"Uncalibrated...Calibrated.m.z..ppm.":0.18341,"Uncalibrated...Calibrated.m.z..Da.":0.00014,"Mass.error..ppm.":0.68048,"Mass.error..Da.":0.00052,"Uncalibrated.mass.error..ppm.":0.86388,"Uncalibrated.mass.error..Da.":0.00066,"Max.intensity.m.z.0":762.82303,"Retention.time":5.4315,"Retention.length":0.08891,"Calibrated.retention.time":5.4315,"Calibrated.retention.time.start":5.3771,"Calibrated.retention.time.finish":5.466,"Retention.time.calibration":0,"Number.of.data.points":26,"Number.of.scans":8,"Number.of.isotopic.peaks":4,"PIF":0,"Fraction.of.total.spectrum":0,"Base.peak.fraction":0,"PEP":1.4625e-10,"MS.MS.count":1,"MS.MS.scan.number":3041,"Score":115.34,"Delta.score":85.209,"Combinatorics":1,"Intensity":32880000,"Reverse":"","Potential.contaminant":"","id":134545,"Protein.group.IDs":"912","Peptide.ID":11290,"Mod..peptide.ID":11988,"MS.MS.IDs":"136404","Best.MS.MS":136404,"Oxidation..M..site.IDs":"393","Phospho..STY..site.IDs":""}
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