Package: prebs 1.53.0

Karolis Uziela

prebs: Probe region expression estimation for RNA-seq data for improved microarray comparability

The prebs package aims at making RNA-sequencing (RNA-seq) data more comparable to microarray data. The comparability is achieved by summarizing sequencing-based expressions of probe regions using a modified version of RMA algorithm. The pipeline takes mapped reads in BAM format as an input and produces either gene expressions or original microarray probe set expressions as an output.

Authors:Karolis Uziela and Antti Honkela

prebs_1.53.0.tar.gz
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prebs_1.53.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
prebs/json (API)

# Install 'prebs' in R:

install.packages('prebs', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:prebs-1.53.0(bioc 3.24)prebs-1.52.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncology microarray rnaseq sequencing geneexpression preprocessing

3.48 score 1 scripts 1 mentions 1 exports 103 dependencies

Last updated from:8cab52a03a. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	229
linux-devel-x86_64	NOTE	513
source / vignettes	OK	359
linux-release-x86_64	NOTE	683
macos-release-arm64	NOTE	310
macos-oldrel-arm64	NOTE	314
windows-devel	NOTE	755
windows-release	NOTE	760
windows-oldrel	NOTE	703
wasm-release	OK	219