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stream)a4a4Basea4Classifa4Corea4Preproca4ReportingABarrayabseqRABSSeqacdeACEaCGHACMEADaCGH2ADAMADAMguiADAPTadductDataadductomicsRADImputeadSplitadverSCarialAerithAffiXcanaffxparseraffyaffycompaffycompDataaffyContamaffycoretoolsaffydataAffyhgu133A2ExprAffyhgu133aExprAffyhgu133Plus2ExpraffyILMaffyioaffylmGUIAffymetrixDataTestFilesAffymoe4302ExpraffyPLMAffyRNADegradationAGDEXaggregateBioVaragilpAgiMicroRnaAHMassBankAIMSairpartairwayalabasteralabaster.basealabaster.bumpyalabaster.filesalabaster.maealabaster.matrixalabaster.rangesalabaster.scealabaster.schemasalabaster.sealabaster.sfealabaster.spatialalabaster.stringalabaster.vcfALDEx2alevinQCALLAllelicImbalanceALLMLLAlphaBetaAlphaMissenseRAlpsNMRaltcdfenvsAMARETTOAMOUNTAINAmpAffyExampleamplicananansiAnaquinANCOMBCANFanglemaniaanimalculesannaffyanndataRannmapannoLinkerannotateAnnotatedBCGEDataannotationAnnotationDbiAnnotationFilterAnnotationForgeAnnotationHubAnnotationHubDataannotationToolsannotatranotaanota2seqantiProfilesantiProfilesDataAnVILAnVILAzAnVILBaseAnVILBillingAnVILGCPAnVILPublishAnVILVRSAnVILWorkflowapComplexapeglmAPLappreci8Raracne.networksaroma.lightArrayExpressarrayMvoutarrayQualityarrayQualityMetricsarraysARRmDataARRmNormalizationartMSASAFEASEBASGSCAAshkenazimSonChr21ASICSASICSdataASpliAssessORFAssessORFDataASSETASSIGNassortheadASURATasuriatacInferCnvATACseqQCATACseqTFEAatenaatSNPattractAUCellaugere.coreaugere.deaugere.gseaaugere.screenaugere.soloautonomicsAWAggregatorAWAggregatorDataAWFisherawstBaalChIPbaconBADERBadRegionFinderBAGSbambuBamScalebamsignalsBANDITSbandleBanksybanoccbarbieQbarmixRBaseSpaceRBasic4CseqBASiCSBASiCStanBasicSTARRseqbasiliskbasilisk.utilsbatchCorrBatChefbatchelorBatchQCBatchSVGBattlefieldBayesKnockdownBayesSpacebayNormbaySeqBBCAnalyzerbcellViperBCRANKbcSeqbeachmatbeachmat.hdf5beachmat.tiledbbeadarraybeadarrayExampleDataBeadArrayUseCasesBeadDataPackRBeadSorted.Saliva.EPICBEATBEclearbedbaserbeerbenchdamicBenchHubBERTbeta7betaHMMbetterChromVARbettrBG2BgeeCallBgeeDBBicAREBiFETbigmelonBindingSiteFinderbioassayRBiobasebiobtreeRBioc.gffbioCancerBioCartaImageBiocAzulBiocBaseUtilsBiocBookBiocBookDemoBiocBuildReporterBiocCheckBiocDuckDBBiocFHIRBiocFileCacheBiocGenericsbiocGraphBiocHailBiocHubsShinyBiocIOBiocMaintainerAppbiocmakeBiocNeighborsBioCorBiocParallelBiocPkgDashBiocPkgToolsbiocroxytestBiocSetBiocSingularBiocSklearnBiocStylebiocthisBiocVersionbiocViewsBiocWorkflowToolsbiodbbioDistBioGABioImageDbsbiomaRtbiomformatBioMVCClassbiomvRCNSBioNARBioNEROBioNetBioPlexBioQCbiosignerBiostringsBioTIPbiotmlebiotmleDatabiovizBasebiscuiteerbiscuiteerDataBiSeqblacksheeprbladderbatchblaseblimablimaTestingDataBLMABloodCancerMultiOmics2017BloodGen3ModuleblusterbnbcbnemBOBaFITbodymapRatborealisBP4RNAseqBRAINbranchpointerbreakpointRbreakpointRdatabreastCancerMAINZbreastCancerNKIbreastCancerTRANSBIGbreastCancerUNTbreastCancerUPPbreastCancerVDXBreastSubtypeRbrendaDbBREW3R.rbrgedataBridgeDbRbroadSeqbronchialIL13BrowserVizBSgenomeBSgenomeForgebsseqbsseqDataBufferedMatrixBufferedMatrixMethodsbugphyzzbugsigdbrBulkSignalRBUMHMMbumphunterBumpyMatrixBUSBUScorrectBUSpaRseBUSseqCaDrACAENCAFECAGEfightRcageminerCAGErCAGEWorkflowCalibraCurvecalmCAMERACaMutQCcanceRcancerclasscancerdatacardelinoCardinalCardinalIOCardinalWorkflowsCARDspacarnationCARNIVALcasperCATALYSTCategorycategoryCompareCatsCradleCausalRcbafcBioPortalDataCBN2PathCBNplotcbpManagerCCAFEccdataccfindRccImputeCCl4CCPlotRCCPROMISECDIcelarefcelarefDataceldaCellBarcodecellbaseRCellBenchcelldexcellityCellMapperCellMapperDataCellMentorcellmigcellmigRationCellMixScellNexusCellNOptRcellscapeCellTrailscellxgenedpCEMiToolcenscytCENTREprecomputedCepoceRNAnetsimCeTFCexoRCFAssaycfdnakitcfDNAProcfToolscfToolsDataCGENCGHbaseCGHcallcghMCRCGHnormaliterCGHregionsCGRphylo2ChAMPChAMPdataChemmineOBChemmineRCHETAHchevreulPlotchevreulProcesschevreulShinyChicagochihayachimeravizChimpHumanBrainDataChIPanalyserChIPCompChIPDBDatachipenrichchipenrich.dataChIPexoQualChIPexoQualExampleChIPpeakAnnoChIPQCChIPseekerchipseqchipseqDBchipseqDBDataChIPseqRChIPsimChIPXpressChIPXpressDatachopsticksChromatogramschromDrawChromHeatMapchromPlotChromSCapechromVARCHRONOScicerocigarilloCIMICEcircRNAprofilerCircSeqAlignTkCiteFuseCLAMPCLAMPDataClassifyRcleanUpdTSeqCleanUpRNAseqcleaverclevRvisclippdaclippercliProfilercliqueMSCLLCLLmethylationClomialClonalSimclstclstutilsCluMSIDCluMSIDdataClustAllclustCompclusterExperimentClusterFoldSimilarityClusterGVisClusterJudgeclusterProfilerclusterSeqClusterSignificanceclusterStabclustifyrclustifyrdatahubClustIRRclustSIGNALCMAcMap2datacmapRcn.farmscn.mopsCNAnormCNErCNORdtCNORfeederCNORfuzzyCNORodeCNToolsCNVfilteRcnvGSAcnvGSAdataCNVizCNVMetricsCNVPanelizerCNVRangerCNVrd2CoCiteStatsCOCOAcodelinkCODEXCoGAPScogenacogeqcCogitocoGPSCOHCAPannocolacolonCAcomaprcombicoMethDMRCOMPASScompcodeRCompensAIDcompEpiToolsComplexHeatmapCompoundDbComPrAncompSPOTCONCERTDRconcordexRcondimentsCONFESSCONFESSdataConnectivityMapconsensusConsensusClusterPlusconsensusDEconsensusOVconsensusSeekeRconsICACONSTANdconumeeconvertcopaCOPDSexu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a4Base::nlcvTT (nlcv)ABSSeq::simuN5 (list)acde::phytophthora (list)ACE::copyNumbersSegmented (QDNAseqCopyNumbers)aCGH::colorectal (aCGH)aCGH::ex.acgh.hmm (list)ACME::example.agff (ACMESet)ADaCGH2::inputEx (data.frame)ADaCGH2::inputEx-sp (data.frame)ADAM::ExpressionAedes (data.frame)ADAM::KeggPathwaysAedes (data.frame)ADAMgui::DiffAedes (data.frame)ADAMgui::GeneFunctionAedes (data.frame)ADAMgui::ResultAnalysisAedes (data.frame)ADAPT::ecc_plaque (phyloseq)ADAPT::ecc_saliva (phyloseq)ADImpute::demo_data (dgCMatrix)ADImpute::demo_net (matrix)ADImpute::demo_sce (SingleCellExperiment)ADImpute::network.coefficients (dgCMatrix)ADImpute::transcript_length (data.frame)adSplit::golubKEGGSplits (splitSet)AffiXcan::exprMatrix (SummarizedExperiment)AffiXcan::regionAssoc (data.frame)AffiXcan::trainingCovariates (data.frame)affy::cdfenv.example (environment)affy::mapCdfName (data.frame)affy::SpikeIn (ProbeSet)affycomp::dilution.phenodata (AnnotatedDataFrame)affycomp::hgu133a.spikein.phenodata (AnnotatedDataFrame)affycomp::hgu133a.spikein.xhyb (list)affycomp::mas5.assessment (list)affycomp::spikein.phenodata (AnnotatedDataFrame)affycompData::lw.sd.assessment (list)affycompData::mas5.assessment (list)affycompData::mas5.assessment.133 (list)affycompData::mas5.assessment2 (list)affycompData::mas5.assessment2.133 (list)affycompData::rma.assessment (list)affycompData::rma.assessment.133 (list)affycompData::rma.assessment2 (list)affycompData::rma.assessment2.133 (list)affycompData::rma.sd.assessment (list)affydata::Dilution (AffyBatch)Affyhgu133A2Expr::Affyhgu133A2Exprtab (data.frame)Affyhgu133aExpr::Affyhgu133aExprtab (data.frame)Affyhgu133Plus2Expr::Affyhgu133Plus2Exprtab (data.frame)Affymoe4302Expr::Affymoe4302Exprtab (data.frame)AGDEX::agdex.res (list)AGDEX::gset.data (GeneSetCollection)AGDEX::human.data (ExpressionSet)AGDEX::map.data (list)AGDEX::mouse.data (ExpressionSet)aggregateBioVar::small_airway (SingleCellExperiment)AgiMicroRna::dd.micro (uRNAList)AgiMicroRna::ddPROC (uRNAList)AgiMicroRna::targets.micro (data.frame)AIMS::AIMSmodel (list)AIMS::mcgillExample (list)airway::airway (RangedSummarizedExperiment)airway::gse (RangedSummarizedExperiment)ALDEx2::selex (data.frame)ALDEx2::synth2 (data.frame)ALL::ALL (ExpressionSet)AllelicImbalance::ASEset (ASEset)AllelicImbalance::ASEset.sim (ASEset)AllelicImbalance::genomatrix (matrix)AllelicImbalance::GRvariants (GRanges)AllelicImbalance::reads (GAlignmentsList)ALLMLL::MLL.A (AffyBatch)ALLMLL::MLL.B (AffyBatch)AlpsNMR::hmdb (tbl_df)AlpsNMR::HMDB_blood (data.frame)AlpsNMR::HMDB_cell (data.frame)AlpsNMR::HMDB_urine (data.frame)AlpsNMR::Parameters_blood (data.frame)AlpsNMR::Parameters_cell (data.frame)AlpsNMR::Parameters_urine (data.frame)AlpsNMR::ROI_blood (data.frame)AlpsNMR::ROI_cell (data.frame)AlpsNMR::ROI_urine (data.frame)altcdfenvs::cdfenvEx (CdfEnvAffy)AMARETTO::BatchData (data.frame)AMARETTO::Driver_Genes (list)AMARETTO::MsigdbMapping (data.frame)AMARETTO::ProcessedDataLIHC (list)AmpAffyExample::AmpData (AffyBatch)anansi::ec2cpd (data.frame)anansi::ec2ko (data.frame)anansi::FMT_KOs (data.frame)anansi::FMT_metab (data.frame)anansi::FMT_metadata (data.frame)anansi::krebs (data.frame)Anaquin::RnaQuinGeneMixture (data.frame)Anaquin::RnaQuinIsoformMixture (data.frame)Anaquin::UserGuideData_5.4.5.1 (data.frame)Anaquin::UserGuideData_5.4.6.3 (data.frame)Anaquin::UserGuideData_5.6.3 (data.frame)ANCOMBC::QMP (matrix)annaffy::aafExpr (ExpressionSet)annotate::hgByChroms (list)annotate::hgCLengths (numeric)annotate::hgu95Achroloc (environment)annotate::hgu95Achrom (environment)annotate::hgu95All (environment)annotate::hgu95AProbLocs (chromLocation)annotate::hgu95Asym (environment)annotationTools::annot_HGU133A (data.frame)annotationTools::ortho (data.frame)annotationTools::table_human (data.frame)annotationTools::table_mouse (data.frame)annotatr::annotations (GRanges)anota::anotaDataP (matrix)anota::anotaDataT (matrix)anota::anotaPhenoVec 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(Assessment)AssessORFData::ATCC13032_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::ATCC17978_PreSaved_DataMapObj (Assessment)AssessORFData::ATCC17978_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::ATCC17978_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::ATCC17978_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::ATCC17978_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::ATCC700084_PreSaved_DataMapObj (Assessment)AssessORFData::ATCC700084_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::ATCC700084_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::ATCC700084_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::ATCC700084_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::BW25113_PreSaved_DataMapObj (Assessment)AssessORFData::BW25113_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::BW25113_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::BW25113_PreSaved_ResultsObj_Glimmer 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(Assessment)AssessORFData::CNRZ327_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::COH1_PreSaved_DataMapObj (Assessment)AssessORFData::COH1_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::COH1_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::COH1_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::COH1_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::D_UW_3_CX_PreSaved_DataMapObj (Assessment)AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::D_UW_3_CX_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::EGD_e_PreSaved_DataMapObj (Assessment)AssessORFData::EGD_e_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::EGD_e_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::EGD_e_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::EGD_e_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::H37Rv_PreSaved_DataMapObj (Assessment)AssessORFData::H37Rv_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::H37Rv_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::H37Rv_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::H37Rv_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::HG001_PreSaved_DataMapObj (Assessment)AssessORFData::HG001_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::HG001_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::HG001_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::HG001_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::Houston_1_PreSaved_DataMapObj (Assessment)AssessORFData::Houston_1_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::Houston_1_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::Houston_1_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::Houston_1_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::Il1403_PreSaved_DataMapObj (Assessment)AssessORFData::Il1403_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::Il1403_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::Il1403_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::Il1403_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::K_12_MG1655_PreSaved_DataMapObj (Assessment)AssessORFData::K_12_MG1655_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::K_12_MG1655_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::K_12_MG1655_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::K_12_MG1655_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::LAL14_1_PreSaved_DataMapObj (Assessment)AssessORFData::LAL14_1_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::LAL14_1_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::LAL14_1_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::LAL14_1_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::MG1363_PreSaved_DataMapObj (Assessment)AssessORFData::MG1363_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::MG1363_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::MG1363_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::MG1363_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::MGAS5005_PreSaved_DataMapObj (Assessment)AssessORFData::MGAS5005_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::MGAS5005_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::MGAS5005_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::MGAS5005_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::NCIB_3610_PreSaved_DataMapObj (Assessment)AssessORFData::NCIB_3610_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::NCIB_3610_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::NCIB_3610_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::NCIB_3610_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::PAO1_PreSaved_DataMapObj (Assessment)AssessORFData::PAO1_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::PAO1_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::PAO1_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::PAO1_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::SL1344_PreSaved_DataMapObj (Assessment)AssessORFData::SL1344_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::SL1344_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::SL1344_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::SL1344_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::Strain10403S_PreSaved_DataMapObj (Assessment)AssessORFData::Strain10403S_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::Strain10403S_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::Strain10403S_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::Strain10403S_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::Strain168_PreSaved_DataMapObj (Assessment)AssessORFData::Strain168_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::Strain168_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::Strain168_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::Strain168_PreSaved_ResultsObj_Prodigal (Assessment)AssessORFData::TCH1516_PreSaved_DataMapObj (Assessment)AssessORFData::TCH1516_PreSaved_ResultsObj_GenBank (Assessment)AssessORFData::TCH1516_PreSaved_ResultsObj_GeneMarkS2 (Assessment)AssessORFData::TCH1516_PreSaved_ResultsObj_Glimmer (Assessment)AssessORFData::TCH1516_PreSaved_ResultsObj_Prodigal (Assessment)ASSET::betahat (numeric)ASSET::data (data.frame)ASSET::data (data.frame)ASSET::ldscintmat (matrix)ASSET::N00 (matrix)ASSET::N10 (matrix)ASSET::N11 (matrix)ASSET::Neff (numeric)ASSET::SE (numeric)ASSET::SNP (character)ASSET::traits (character)ASSIGN::excludegenes (character)ASSIGN::geneList1 (list)ASSIGN::gfrn_geneList (list)ASSIGN::testData1 (data.frame)ASSIGN::trainingData1 (data.frame)ASURAT::human_COMSig_eg (list)ASURAT::human_GO_eg (list)ASURAT::human_KEGG_eg 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Binaries for R-4.5

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