NEWS

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prebs 1.7.1

• Introduced a new parameter sum.method. It is used to choose the microarray summarization mode: RPA or RMA. The default value is RPA.

prebs 1.5.3

• Introduced new parameter paired_ended_reads. When the data contains paired-ended reads, this parameter should be set to TRUE. Otherwise, the two read mates will be treated as independent units.
• Introduced new parameter ignore_strand. If set to TRUE then the strand from which read comes is ignored when counting overlaps. If you use strand-specific RNA-seq protocol, you should set it to FALSE, otherwise set it to TRUE.