Package: gDRimport 1.3.2

Arkadiusz Gladki

gDRimport: Package for handling the import of dose-response data

The package is a part of the gDR suite. It helps to prepare raw drug response data for downstream processing. It mainly contains helper functions for importing/loading/validating dose-response data provided in different file formats.

Authors:Arkadiusz Gladki [aut, cre], Bartosz Czech [aut], Marc Hafner [aut], Sergiu Mocanu [aut], Dariusz Scigocki [aut], Allison Vuong [aut], Luca Gerosa [aut], Janina Smola [aut]

gDRimport_1.3.2.tar.gz
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gDRimport.pdf |gDRimport.html✨
gDRimport/json (API)
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Bug tracker:https://github.com/gdrplatform/gdrimport/issues

On BioConductor:gDRimport-1.3.1(bioc 3.20)gDRimport-1.2.0(bioc 3.19)

bioconductor-package

26 exports 2.38 score 197 dependencies 1 dependents

Last updated 6 days agofrom:b00edeb07b

Exports:check_metadata_namesconvert_LEVEL5_prism_to_gDR_inputconvert_LEVEL6_prism_to_gDR_inputconvert_MAE_to_PSetconvert_pset_to_dfdetect_file_formatget_exception_dataget_test_D300_dataget_test_dataget_test_EnVision_dataget_test_Tecan_dataget_test_tsv_datagetPSetimport_D300is_readable_vload_dataload_manifestload_resultsload_templatesmanifest_pathparse_D300_xmlread_excel_to_dtresult_pathsetEnvForPSetstandardize_record_valuestemplate_path

Dependencies:abindaskpassassertthatbackportsbase64encbenchBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbitbit64bitopsbootbroombslibBumpyMatrixcachemcarcarDatacaToolscelestialcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkcoopCoreGxcowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydownloaderdplyrdrcDTevaluatefansifarverfastmapfastmatchfgseafontawesomeforcatsforeignformatRfsfutile.loggerfutile.optionsgDRutilsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegplotsgtablegtoolshavenhighrhmshtmltoolshtmlwidgetshttpuvhttrigraphIRangesisobandjquerylibjsonlitejsonvalidateKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lsamagicaxismagrittrmapprojmapsmarrayMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompMultiAssayExperimentmunsellmvtnormNISTunitsnlmenloptrnnetnumDerivopensslopenxlsxpbkrtestPharmacoGxpianopillarpkgconfigplotrixplyrpracmaprettyunitsprofmemprogresspromisespurrrquantregR.methodsS3R.ooR.utilsR6RANNrappdirsRColorBrewerRcppRcppEigenreadrreadxlrelationsrematchreshape2riorlangrmarkdownS4ArraysS4VectorssandwichsassscalessetsshinyshinydashboardshinyjsslamsmsnowSnowballCsourcetoolsSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselecttinytextzdbUCSC.utilsutf8V8vctrsviridisLitevisNetworkvroomwithrwritexlxfunXMLxtableXVectoryamlzipzlibbioczoo