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  "Title": "Package for handling the import of dose-response data",
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  "Date": "2026-05-27",
  "Authors@R": "c(\nperson(\"Arkadiusz\", \"Gladki\", role=c(\"aut\", \"cre\"), email=\"gladki.arkadiusz@gmail.com\",\ncomment = c(ORCID = \"0000-0002-7059-6378\")),\nperson(\"Bartosz\", \"Czech\", role=\"aut\",\ncomment = c(ORCID = \"0000-0002-9908-3007\")),\nperson(\"Marc\", \"Hafner\", role=\"aut\",\ncomment = c(ORCID = \"0000-0003-1337-7598\")),\nperson(\"Sergiu\", \"Mocanu\", role=\"aut\"),\nperson(\"Dariusz\", \"Scigocki\", role=\"aut\"),\nperson(\"Allison\", \"Vuong\", role=\"aut\"),\nperson(\"Luca\", \"Gerosa\", role=\"aut\",\ncomment = c(ORCID = \"0000-0001-6805-9410\")),\nperson(\"Janina\", \"Smola\", role=\"aut\"))",
  "Description": "The package is a part of the gDR suite. It helps to\nprepare raw drug response data for downstream processing. It\nmainly contains helper functions for\nimporting/loading/validating dose-response data provided in\ndifferent file formats.",
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  "Date/Publication": "2026-05-28 06:27:49 UTC",
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  "Author": "Arkadiusz Gladki [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7059-6378>),\nBartosz Czech [aut] (ORCID: <https://orcid.org/0000-0002-9908-3007>),\nMarc Hafner [aut] (ORCID: <https://orcid.org/0000-0003-1337-7598>),\nSergiu Mocanu [aut],\nDariusz Scigocki [aut],\nAllison Vuong [aut],\nLuca Gerosa [aut] (ORCID: <https://orcid.org/0000-0001-6805-9410>),\nJanina Smola [aut]",
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    "convert_LEVEL6_prism_to_gDR_input",
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    "get_test_Tecan_data",
    "get_test_tsv_data",
    "getPSet",
    "import_D300",
    "is_readable_v",
    "load_data",
    "load_manifest",
    "load_results",
    "load_templates",
    "manifest_path",
    "parse_D300_xml",
    "read_excel_to_dt",
    "result_path",
    "setEnvForPSet",
    "standardize_record_values",
    "template_path"
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        ".check_against_single_template_sheet"
      ]
    },
    {
      "page": "are_template_sheets_valid",
      "title": "are template sheet valid?",
      "topics": [
        "are_template_sheets_valid"
      ]
    },
    {
      "page": "check_metadata_against_spaces",
      "title": "Check metadata against spaces",
      "topics": [
        "check_metadata_against_spaces"
      ]
    },
    {
      "page": "check_metadata_field_names",
      "title": "Check metadata field names",
      "topics": [
        "check_metadata_field_names"
      ]
    },
    {
      "page": "check_metadata_headers",
      "title": "Check whether metadata headers are correct and make fixes if needed",
      "topics": [
        "check_metadata_headers"
      ]
    },
    {
      "page": "check_metadata_names",
      "title": "check_metadata_names",
      "topics": [
        "check_metadata_names"
      ]
    },
    {
      "page": "check_metadata_req_col_names",
      "title": "Check metadata for required column names",
      "topics": [
        "check_metadata_req_col_names"
      ]
    },
    {
      "page": "convert_LEVEL5_prism_to_gDR_input",
      "title": "Load, convert and process the level 5 PRISM data into a gDR input",
      "topics": [
        "convert_LEVEL5_prism_to_gDR_input"
      ]
    },
    {
      "page": "convert_LEVEL6_prism_to_gDR_input",
      "title": "Load, convert and process the level 6 PRISM data into a gDR input",
      "topics": [
        "convert_LEVEL6_prism_to_gDR_input"
      ]
    },
    {
      "page": "convert_MAE_to_PSet",
      "title": "Convert MultiAssayExperiment to TreatmentResponseExperiment",
      "topics": [
        "convert_MAE_to_PSet"
      ]
    },
    {
      "page": "convert_pset_to_df",
      "title": "Convert a PharmacoSet to a data.table that is prepare for input into gDR pipeline",
      "topics": [
        "convert_pset_to_df"
      ]
    },
    {
      "page": "correct_template_sheets",
      "title": "Correct names of the template sheets (if required)",
      "topics": [
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      ]
    },
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      "title": "Detect format of results data",
      "topics": [
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      ]
    },
    {
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      "title": "Enhance raw edited EnVision data.table",
      "topics": [
        "enhance_raw_edited_EnVision_df"
      ]
    },
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      "page": "fix_typos_with_reference",
      "title": "Fix typos using reference data",
      "topics": [
        "fix_typos_with_reference"
      ]
    },
    {
      "page": "gdr_test_data-class",
      "title": "gDR Test Data object",
      "topics": [
        "gdr_test_data-class"
      ]
    },
    {
      "page": "get_df_from_raw_edited_EnVision_df",
      "title": "Get final results (as a data.table) from raw edited EnVision data.table",
      "topics": [
        "get_df_from_raw_edited_EnVision_df"
      ]
    },
    {
      "page": "get_df_from_raw_unedited_EnVision_df",
      "title": "Get final results (as a data.table) from raw unedited EnVision data.table",
      "topics": [
        "get_df_from_raw_unedited_EnVision_df"
      ]
    },
    {
      "page": "get_EnVision_properties",
      "title": "Get properties of EnVision data",
      "topics": [
        "get_EnVision_properties"
      ]
    },
    {
      "page": "get_excel_sheet_names",
      "title": "get Excel sheets names for a charvec of files for non-Excel files return 0",
      "topics": [
        "get_excel_sheet_names"
      ]
    },
    {
      "page": "get_exception_data",
      "title": "get exception data",
      "topics": [
        "get_exception_data"
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    },
    {
      "page": "get_expected_template_sheets",
      "title": "Get names of the sheets expected in templates xlsx",
      "topics": [
        "get_expected_template_sheets"
      ]
    },
    {
      "page": "get_plate_info_from_template_xlsx",
      "title": "Get plate info from template xlsx",
      "topics": [
        "get_plate_info_from_template_xlsx"
      ]
    },
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      "page": "get_test_D300_data",
      "title": "get test D300 data",
      "topics": [
        "get_test_D300_data"
      ]
    },
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      "page": "get_test_data",
      "title": "get primary test data",
      "topics": [
        "get_test_data"
      ]
    },
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      "page": "get_test_EnVision_data",
      "title": "get test EnVision data",
      "topics": [
        "get_test_EnVision_data"
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    },
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      "page": "get_test_Tecan_data",
      "title": "get test Tecan data",
      "topics": [
        "get_test_Tecan_data"
      ]
    },
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      "page": "get_test_tsv_data",
      "title": "get test tsv data",
      "topics": [
        "get_test_tsv_data"
      ]
    },
    {
      "page": "get_xl_sheets",
      "title": "Get Excel sheets",
      "topics": [
        "get_xl_sheets"
      ]
    },
    {
      "page": "getPSet",
      "title": "Get PharmacoSet",
      "topics": [
        "getPSet"
      ]
    },
    {
      "page": "import_D300",
      "title": "Import D300",
      "topics": [
        "import_D300"
      ]
    },
    {
      "page": "is_readable_v",
      "title": "is_readable_v Check if all paths in vector are readable",
      "topics": [
        "is_readable_v"
      ]
    },
    {
      "page": "load_data",
      "title": "Load data",
      "topics": [
        "load_data"
      ]
    },
    {
      "page": "load_manifest",
      "title": "Load manifest",
      "topics": [
        "load_manifest"
      ]
    },
    {
      "page": "load_results",
      "title": "Load results",
      "topics": [
        "load_results"
      ]
    },
    {
      "page": "load_results_EnVision",
      "title": "Load EnVision results from xlsx",
      "topics": [
        "load_results_EnVision"
      ]
    },
    {
      "page": "load_results_EnVision_new",
      "title": "Load results from EnVision_new (CSV and XLSX)",
      "topics": [
        "load_results_EnVision_new"
      ]
    },
    {
      "page": "load_results_Incucyte",
      "title": "Load incucyte results from plain text",
      "topics": [
        "load_results_Incucyte"
      ]
    },
    {
      "page": "load_results_Tecan",
      "title": "Load tecan results from xlsx",
      "topics": [
        "load_results_Tecan"
      ]
    },
    {
      "page": "load_results_tsv",
      "title": "Load results from tsv",
      "topics": [
        "load_results_tsv"
      ]
    },
    {
      "page": "load_templates",
      "title": "Load templates",
      "topics": [
        "load_templates"
      ]
    },
    {
      "page": "load_templates_tsv",
      "title": "Load templates from tsv",
      "topics": [
        "load_templates_tsv"
      ]
    },
    {
      "page": "load_templates_xlsx",
      "title": "Load templates from xlsx",
      "topics": [
        "load_templates_xlsx"
      ]
    },
    {
      "page": "manifest_path-method",
      "title": "Method manifest_path",
      "topics": [
        "manifest_path",
        "manifest_path,gdr_test_data-method"
      ]
    },
    {
      "page": "mgrepl",
      "title": "grep wrapper to support multiple patterns",
      "topics": [
        "mgrepl"
      ]
    },
    {
      "page": "parse_D300_xml",
      "title": "Parse D300",
      "topics": [
        "parse_D300_xml"
      ]
    },
    {
      "page": "read_EnVision_delim",
      "title": "Read EnVision delimited text files",
      "topics": [
        "read_EnVision_delim"
      ]
    },
    {
      "page": "read_EnVision_xlsx",
      "title": "Read in single xlsx data from EnVision",
      "topics": [
        "read_EnVision_xlsx"
      ]
    },
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