NEWS

---

gDRimport 2024-11-06 (2024-11-06)

• fix invalid moa for PRISM data

gDRimport 2024-11-05 (2024-11-05)

• synchronize Bioconductor and GitHub versioning

gDRimport 2024-10-22 (2024-10-22)

• fix test for load_files

gDRimport 2024-08-29 (2024-08-29)

• fix failing github page

gDRimport 2024-08-12 (2024-08-12)

• update function for importing public PRISM data

gDRimport 2024-07-03 (2024-07-03)

• fix a bug with incorrect recognition of input file types

gDRimport 2024-05-27 (2024-05-27)

• synchronize Bioconductor and GitHub versioning

gDRimport 2024-05-21 (2024-05-21)

• move functions for importing PRISM data

gDRimport 2024-05-08 (2024-05-08)

• fix typo

gDRimport 2024-04-08 (2024-04-08)

• change output of get_exception_data to data.table

gDRimport 2024-03-26 (2024-03-26)

• fix issue with reading tsv files

gDRimport 2024-03-07 (2024-03-07)

• clean up the package

gDRimport 2024-02-26 (2024-02-26)

• improve pkgdown site
  • improved references
  • valid NEWS.md

gDRimport 2024-02-14 (2024-02-14)

• make documentation compatible with pkdgdown

gDRimport 2024-01-22 (2024-01-22)

• add new description fields

gDRimport 2023-12-19 (2023-12-19)

• update package vignette

gDRimport 2023-12-01 (2023-12-01)

• update validation function used during data submission

gDRimport 2023-11-22 (2023-11-22)

• sync main with devel branch
• add "Treatment" as template identifier

gDRimport 2023-10-24 (2023-10-24)

• release Bioc 3.18

• prerelease Bioc 3.18

gDRimport 2023-10-17 (2023-10-17)

• adjust NEWS to Bioc format

gDRimport 2023-10-02 (2023-10-02)

• add functions & unit tests for converting gDR MAE to PSet

gDRimport 2023-09-22 (2023-09-22)

• correct plate size calculation

gDRimport 2023-09-20 (2023-09-20)

• set barcode as character in the manifest file

gDRimport 2023-09-14 (2023-09-14)

• disable support for 'xls' file format due to crashes

gDRimport 2023-08-25 (2023-08-25)

• refactor subsetting of data.table using colname

gDRimport 2023-07-19 (2023-07-19)

• update warning messages

gDRimport 2023-07-02 (2023-07-02)

• add BiocStyle

gDRimport 2023-06-27 (2023-06-27)

• add exception entry for invalid average dose-response data

gDRimport 2023-06-23 (2023-06-23)

• increase compression level - Tavor_2020.qs; < 5MB limit

gDRimport 2023-06-22 (2023-06-22)

• replaced rds with qs

gDRimport 2023-06-13 (2023-06-13)

• switch from merge to [[

gDRimport 2023-06-05 (2023-06-05)

• replaced reshape2 functions by functions from data.table

gDRimport 2023-05-24 (2023-05-24)

• format the vignette with BiocStyle

gDRimport 2023-05-16 (2023-05-16)

• data.frame => data.table switch - next round of changes

gDRimport 2023-05-04 (2023-05-04)

• switch from tibble to data.table in excel files

gDRimport 2023-04-25 (2023-04-25)

• refactor tibble, data.frame --> data.table

gDRimport 2023-04-20 (2023-04-20)

• switch to OSI license

• clean-up vignette

gDRimport 2023-04-19 (2023-04-19)

• add object S4 gdr_test_data

• mocked PSets tests

gDRimport 2023-04-17 (2023-04-17)

• add R 4.2 as dependency
• bugfix for Pset-related tests and examples - reset identifiers

gDRimport 2023-04-13 (2023-04-13)

• add minor improvements - BiocCheck compatibility

gDRimport 2023-04-11 (2023-04-11)

• add support for PharmacoGx

gDRimport 2023-04-07 (2023-04-07)

• update maintainer

gDRimport 2023-03-24 (2023-03-24)

• make the package Bioc-compatible

gDRimport 2023-03-01 (2023-03-01)

• remove obsolete code

gDRimport 2023-02-14 (2023-02-14)

• add tests for check_metadata_names

gDRimport 2023-01-23 (2023-01-23)

• add function for detecting format of raw data

gDRimport 2022-12-20 (2022-12-20)

• add exceptions for missing drugs' and cell lines' annotations

gDRimport 2022-12-14 (2022-12-14)

• make exception tests more robust

gDRimport 2022-12-13 (2022-12-13)

• add additional error message for handling data in gDRin

gDRimport 2022-11-02 (2022-11-02)

• add exception table and getter and update exceptions in load_files.R

gDRimport 2022-10-26 (2022-10-26)

• fix bug with reading two untreated templates

gDRimport 2022-10-17 (2022-10-17)

• add missing namespace and add unit tests for correct_template_sheets

gDRimport 2022-10-06 (2022-10-06)

• extend logic for correcting template data - II

gDRimport 2022-10-04 (2022-10-04)

• extend logic for correcting manifest and template data

gDRimport 2022-09-12 (2022-09-12)

• extend the logic for filling empty cols in plate design

gDRimport 2022-07-28 (2022-07-28)

• change the logic for identification plates using more versatile solution

gDRimport 2022-07-27 (2022-07-27)

• add assert for templates without untreated controls

gDRimport 2022-07-06 (2022-07-06)

• reduce warnings and get rid of apply-

gDRimport 2022-06-17 (2022-06-17)

• modify the logic for detecting empty columns

gDRimport 2022-06-15 (2022-06-15)

• extend the logic for loading EnVision data for other plate size

gDRimport 2022-06-03 (2022-06-03)

• add support to load drug doses from D300 .tdd files

gDRimport 2022-06-02 (2022-06-02)

• release

gDRimport 2022-05-18 (2022-05-18)

• add load_results_Tecan
• add tests for load_results_Tecan

gDRimport 2022-04-21 (2022-04-21)

• fix unit tests

gDRimport 2022-03-30 (2022-03-30)

• add support for Plate as an equivalent of Barcode

gDRimport 2022-03-24 (2022-03-24)

• fix hardcoded identifiers
• update error message for custom column names

gDRimport 2021-09-10 (2021-09-10)

• switch from get_identifier to get_env_identifiers

gDRimport 2021-08-24 (2021-08-24)

• fix wrong argument in convert_se_assay_to_dt

gDRimport 2021-07-23 (2021-07-23)

• 's/assay_to_dt/convert_se_assay_to_dt/' in write_ref_data_se
• fix linter issues
• knitr as Suggested package

gDRimport 2021-07-06 (2021-07-06)

• remove nested repo structure

gDRimport 2021-06-28 (2021-06-28)

• restore functions for reading reference data

• add unit tests

gDRimport 2021-06-25 (2021-06-25)

• add exemplary EnVision data

• move functions related to reading template from gDRcore package

• code refactor using lintr

gDRimport 2021-06-22 (2021-06-22)

• initial release - importing fucntions moved from gDRcore package