Introduction | A native example without downloads | Published native datasets | Loading a published native dataset | Session information
Package: SpaMTPData 0.99.5
Tianyao Lu
SpaMTPData: Experiment Data Resources for SpaMTP Workflows
Provides lightweight, version-aware access to spatial metabolomics and multi-omics experiment data used in SpaMTP workflows. Resources cover mouse brain, mouse urinary bladder, simulated single-cell multi-omics, annotation-refinement, and human brain examples. Large files are retrieved through ExperimentHub or verified source-URL caches rather than stored in the package repository. A small deterministic synthetic SpatialExperiment with a paired transcriptome supports offline examples and interoperability tests. Native SpatialExperiment datasets are available in a separate resource release; historical archival objects retain their original representations. Conversion and analysis are handled by the SpaMTP software package. Native experimental files share a Zenodo version family with SpaMTPdb without coupling the packages at runtime.
Authors:
SpaMTPData_0.99.5.tar.gz
SpaMTPData_0.99.5.tar.gz(r-4.7-any)SpaMTPData_0.99.5.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SpaMTPData/json (API)
| # Install 'SpaMTPData' in R: |
| install.packages('SpaMTPData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bcrl-tylu/spamtpdata/issues
On BioConductor:SpaMTPData-0.99.5(data/experiment 3.24)
experimentdataexperimenthubhomo_sapiens_datamus_musculus_datareproducibleresearchdatapkg
Last updated from:fbe70ba99b. Checks:1 NOTE, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 166 | ||
| linux-devel | OK | 396 | ||
| source / vignettes | OK | 276 | ||
| linux-release | OK | 410 |
Exports:spaMTPDataspaMTPDataResourcespaMTPDataResourcesspaMTPDataVersionspaMTPExampleData
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrExperimentHubfastmapfilelockgenericsGenomicRangesgluehttrhttr2IRangesjsonliteKEGGRESTlatticelifecyclemagickmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsRcpprjsonrlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve a SpaMTP experiment resource | spaMTPData |
| Alias for explicit SpaMTPData resource retrieval | spaMTPDataResource |
| List SpaMTP experiment resources | spaMTPDataResources |
| Report the available SpaMTPData releases | spaMTPDataVersion |
| Construct a small native spatial multi-omics example | spaMTPExampleData |