Package: SpaMTPData
Type: Package
Title: Experiment Data Resources for SpaMTP Workflows
Version: 0.99.5
Date: 2026-09-13
Authors@R: c(
    person("Tianyao", "Lu",
           email = "lu.t@wehi.edu.au",
           role = c("aut", "cre")),
    person("Andrew", "Causer", role = "aut"),
    person("Quan", "Nguyen", role = "aut")
    )
Description: Provides lightweight, version-aware access to spatial
        metabolomics and multi-omics experiment data used in SpaMTP
        workflows. Resources cover mouse brain, mouse urinary bladder,
        simulated single-cell multi-omics, annotation-refinement, and
        human brain examples. Large files are retrieved through
        ExperimentHub or verified source-URL caches rather than stored
        in the package repository. A small deterministic synthetic
        SpatialExperiment with a paired transcriptome supports offline
        examples and interoperability tests. Native SpatialExperiment
        datasets are available in a separate resource release;
        historical archival objects retain their original
        representations. Conversion and analysis are handled by the
        SpaMTP software package. Native experimental files share a
        Zenodo version family with SpaMTPdb without coupling the
        packages at runtime.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: AnnotationHub, ExperimentHub, S4Vectors, SingleCellExperiment,
        SpatialExperiment, utils
Suggests: BiocStyle, ExperimentHubData, jsonlite, knitr, rmarkdown,
        SummarizedExperiment, testthat (>= 3.0.0)
biocViews: ExperimentData, ExperimentHub, Homo_sapiens_Data,
        Mus_musculus_Data, ReproducibleResearch
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
URL: https://github.com/BCRL-tylu/SpaMTPData
BugReports: https://github.com/BCRL-tylu/SpaMTPData/issues
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libpng-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-13 12:18:48 UTC
RemoteUrl: https://github.com/bioc/SpaMTPData
RemoteRef: HEAD
RemoteSha: fbe70ba99b9bc55869c09c7eb9fae70e036a2fad
NeedsCompilation: no
Packaged: 2026-10-10 10:46:54 UTC; root
Author: Tianyao Lu [aut, cre],
  Andrew Causer [aut],
  Quan Nguyen [aut]
Maintainer: Tianyao Lu <lu.t@wehi.edu.au>