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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SpaMTPData" in publications use:'
type: software
license: MIT
title: 'SpaMTPData: Experiment Data Resources for SpaMTP Workflows'
version: 0.99.5
doi: 10.1038/s41592-026-03140-8
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SpaMTPData
abstract: Provides lightweight, version-aware access to spatial metabolomics and multi-omics
  experiment data used in SpaMTP workflows. Resources cover mouse brain, mouse urinary
  bladder, simulated single-cell multi-omics, annotation-refinement, and human brain
  examples. Large files are retrieved through ExperimentHub or verified source-URL
  caches rather than stored in the package repository. A small deterministic synthetic
  SpatialExperiment with a paired transcriptome supports offline examples and interoperability
  tests. Native SpatialExperiment datasets are available in a separate resource release;
  historical archival objects retain their original representations. Conversion and
  analysis are handled by the SpaMTP software package. Native experimental files share
  a Zenodo version family with SpaMTPdb without coupling the packages at runtime.
authors:
- family-names: Lu
  given-names: Tianyao
  email: lu.t@wehi.edu.au
- family-names: Causer
  given-names: Andrew
- family-names: Nguyen
  given-names: Quan
preferred-citation:
  type: article
  title: 'SpaMTP: integrative statistical analysis and visualization of spatial metabolomics
    and transcriptomics data'
  authors:
  - family-names: Causer
    given-names: Andrew
  - family-names: Lu
    given-names: Tianyao
    email: lu.t@wehi.edu.au
  - family-names: Kriel
    given-names: Jurgen
  - family-names: Moffet
    given-names: Joel J. D.
  - family-names: Fitzgerald
    given-names: Christopher C. J.
  - family-names: Newman
    given-names: Andrew
  - family-names: Vu
    given-names: Hani
  - family-names: Tan
    given-names: Xiao
  - family-names: Vo
    given-names: Tuan
  - family-names: Cui
    given-names: Cedric
  - family-names: Narayana
    given-names: Vinod K.
  - family-names: Whittle
    given-names: James R.
  - family-names: Best
    given-names: Sarah A.
  - family-names: Freytag
    given-names: Saskia
  - family-names: Nguyen
    given-names: Quan
  journal: Nature Methods
  year: '2026'
  volume: '23'
  issue: '8'
  doi: 10.1038/s41592-026-03140-8
  url: https://doi.org/10.1038/s41592-026-03140-8
  start: '1501'
  end: '1506'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/BCRL-tylu/SpaMTPData
commit: fbe70ba99b9bc55869c09c7eb9fae70e036a2fad
url: https://github.com/BCRL-tylu/SpaMTPData
date-released: '2026-09-13'
contact:
- family-names: Lu
  given-names: Tianyao
  email: lu.t@wehi.edu.au