Package: CARNIVAL 2.15.0
Attila Gabor
CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming
An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.
Authors:
CARNIVAL_2.15.0.tar.gz
CARNIVAL_2.15.0.zip(r-4.5)CARNIVAL_2.15.0.zip(r-4.4)CARNIVAL_2.15.0.zip(r-4.3)
CARNIVAL_2.15.0.tgz(r-4.4-any)CARNIVAL_2.15.0.tgz(r-4.3-any)
CARNIVAL_2.15.0.tar.gz(r-4.5-noble)CARNIVAL_2.15.0.tar.gz(r-4.4-noble)
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CARNIVAL.pdf |CARNIVAL.html✨
CARNIVAL/json (API)
NEWS
| # Install 'CARNIVAL' in R: |
| install.packages('CARNIVAL', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/saezlab/carnival/issues
On BioConductor:CARNIVAL-2.15.0(bioc 3.20)CARNIVAL-2.14.0(bioc 3.19)
Last updated 2 months agofrom:8598a5ed17
Exports:checkOptionsValiditydefaultCbcSolveCarnivalOptionsdefaultCplexCarnivalOptionsdefaultCplexSpecificOptionsdefaultLpSolveCarnivalOptionsgenerateLpFileCarnivalgetOptionsListgetSupportedSolversisInputValidCarnivalrunCARNIVALrunFromLpCarnivalrunInverseCarnivalrunVanillaCarnivalsetCarnivalOptionssuggestedCbcSpecificOptionssuggestedCplexSpecificOptions
Dependencies:base64encbitbit64bslibcachemclicliprcpp11crayondigestdplyrevaluatefansifastmapfontawesomefsgenericsgluehighrhmshtmltoolsigraphjquerylibjsonliteknitrlatticelifecyclelpSolvemagrittrMatrixmemoisemimepillarpkgconfigprettyunitsprogresspurrrR6rappdirsreadrrjsonrlangrmarkdownsassstringistringrtibbletidyrtidyselecttinytextzdbutf8vctrsvroomwithrxfunyaml
