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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CARNIVAL" in publications use:'
type: software
license: GPL-3.0-only
title: 'CARNIVAL: A CAusal Reasoning tool for Network Identification (from gene expression
  data) using Integer VALue programming'
version: 2.15.0
doi: 10.18129/B9.bioc.CARNIVAL
abstract: An upgraded causal reasoning tool from Melas et al in R with updated assignments
  of TFs' weights from PROGENy scores. Optimization parameters can be freely adjusted
  and multiple solutions can be obtained and aggregated.
authors:
- family-names: Gjerga
  given-names: Enio
  email: enio.gjerga@gmail.com
  orcid: https://orcid.org/0000-0002-3060-5786
- family-names: Trairatphisan
  given-names: Panuwat
- family-names: Gabor
  given-names: Attila
  email: attila.gabor@uni-heidelberg.de
- family-names: Ivanova
  given-names: Olga
  email: olga.ivanova@bioquant.uni-heidelberg.de
preferred-citation:
  type: manual
  title: CARNIVAL
  authors:
  - family-names: Gjerga
    given-names: Enio
    email: enio.gjerga@gmail.com
    orcid: https://orcid.org/0000-0002-3060-5786
  - family-names: Trairatphisan
    given-names: Panuwat
  - family-names: Liu
    given-names: Anika
  - family-names: Valdeolivas
    given-names: Alberto
  - family-names: Peschke
    given-names: Nikolas
  - family-names: Dugourd
    given-names: Aurelien
  - family-names: Gabor
    given-names: Attila
    email: attila.gabor@uni-heidelberg.de
  - family-names: Ivanova
    given-names: Olga
    email: olga.ivanova@bioquant.uni-heidelberg.de
  year: '2024'
  url: http://www.bioconductor.org/packages/CARNIVAL
  notes: https://github.com/saezlab/CARNIVAL/CARNIVAL - R package version 2.15.0
  doi: 10.18129/B9.bioc.CARNIVAL
repository: https://bioc.r-universe.dev
repository-code: https://github.com/saezlab/CARNIVAL
url: https://github.com/saezlab/CARNIVAL
contact:
- family-names: Gabor
  given-names: Attila
  email: attila.gabor@uni-heidelberg.de
references:
- type: article
  title: 'From expression footprints to causal pathways: contextualizing large signaling
    networks with CARNIVAL'
  authors:
  - family-names: Liu
    given-names: Anika
  - family-names: Trairatphisan
    given-names: Panuwat
  - family-names: Gjerga
    given-names: Enio
  - family-names: Didangelos
    given-names: Athanasios
  - family-names: Barratt
    given-names: Jonathan
  - family-names: Saez-Rodriguez
    given-names: Julio
  year: '2019'
  journal: npj Syst Biol Appl
  doi: 10.1038/s41540-019-0118-z
  url: https://www.nature.com/articles/s41540-019-0118-z