Introduction | Status 2024 | Importing as GRanges | Importing as GRanges from the RNA database | Further analysis | Session info | References
Package: tRNAdbImport 1.31.0
Felix G.M. Ernst
tRNAdbImport: Importing from tRNAdb and mitotRNAdb as GRanges objects
tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.
Authors:
tRNAdbImport_1.31.0.tar.gz
tRNAdbImport_1.31.0.zip(r-4.7)tRNAdbImport_1.31.0.zip(r-4.6)tRNAdbImport_1.31.0.zip(r-4.5)
tRNAdbImport_1.31.0.tgz(r-4.6-any)tRNAdbImport_1.31.0.tgz(r-4.5-any)
tRNAdbImport_1.31.0.tar.gz(r-4.7-any)tRNAdbImport_1.31.0.tar.gz(r-4.6-any)
tRNAdbImport_1.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tRNAdbImport/json (API)
| # Install 'tRNAdbImport' in R: |
| install.packages('tRNAdbImport', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/felixernst/trnadbimport/issues
On BioConductor:tRNAdbImport-1.31.0(bioc 3.24)tRNAdbImport-1.30.0(bioc 3.23)
softwarevisualizationdataimportbioconductorsequencesstructurestrnatrna-genestrna-sequencestrnadb
Last updated from:1d1e251a26. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 175 | ||
| linux-devel-x86_64 | OK | 280 | ||
| source / vignettes | OK | 262 | ||
| linux-release-x86_64 | OK | 308 | ||
| macos-release-arm64 | OK | 130 | ||
| macos-oldrel-arm64 | OK | 136 | ||
| windows-devel | OK | 173 | ||
| windows-release | OK | 153 | ||
| windows-oldrel | OK | 190 | ||
| wasm-release | OK | 166 |
Exports:import.mttRNAdbimport.mttRNAdb.idimport.tRNAdbimport.tRNAdb.blastimport.tRNAdb.idistRNAdbGRangesopen_mtdbIDopen_tdbIDTRNA_DB_URLTRNA_DB_URL_MTtRNAdb2GFF
Dependencies:askpassBiocGenericsBiostringsclicpp11crayoncurlfarvergenericsGenomicRangesggplot2gluegtablehttr2IRangesisobandlabelinglifecyclemagrittrModstringsopensslR6rappdirsRColorBrewerrlangS4VectorsS7scalesSeqinfostringistringrStructstringssystRNAvctrsviridisLitewithrxml2XVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Importing information from the tRNA db as GRanges object | import.mttRNAdb import.mttRNAdb.blast import.mttRNAdb.id import.tRNAdb import.tRNAdb.blast import.tRNAdb.id tRNAdb2GFF TRNA_DB_URL TRNA_DB_URL_MT |
| tRNAdb compatibility check | istRNAdbGRanges istRNAdbGRanges,GRanges-method |
| Open a tRNA db entry in a browser | open_mtdbID open_tdbID |
| tRNAdbImport: Importing from to tRNAdb and mitotRNAdb as GRanges | tRNAdbImport |
