Package: tRNAdbImport 1.23.0

Felix G.M. Ernst

tRNAdbImport: Importing from tRNAdb and mitotRNAdb as GRanges objects

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Authors:Felix G.M. Ernst [aut, cre]

tRNAdbImport_1.23.0.tar.gz
tRNAdbImport_1.23.0.zip(r-4.5)tRNAdbImport_1.23.0.zip(r-4.4)tRNAdbImport_1.23.0.zip(r-4.3)
tRNAdbImport_1.23.0.tgz(r-4.4-any)tRNAdbImport_1.23.0.tgz(r-4.3-any)
tRNAdbImport_1.23.0.tar.gz(r-4.5-noble)tRNAdbImport_1.23.0.tar.gz(r-4.4-noble)
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tRNAdbImport.pdf |tRNAdbImport.html✨
tRNAdbImport/json (API)
NEWS

# Install 'tRNAdbImport' in R:
install.packages('tRNAdbImport', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/felixernst/trnadbimport/issues

On BioConductor:tRNAdbImport-1.23.0(bioc 3.20)tRNAdbImport-1.22.0(bioc 3.19)

softwarevisualizationdataimportbioconductorsequencesstructurestrnatrna-genestrna-sequencestrnadb

11 exports 1 stars 5.35 score 54 dependencies 1 dependents 3 scripts 244 downloads

Last updated 5 months agofrom:c6599e929e. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 07 2024
R-4.5-winOKSep 07 2024
R-4.5-linuxOKSep 07 2024
R-4.4-winOKSep 07 2024
R-4.4-macOKSep 07 2024
R-4.3-winOKSep 07 2024
R-4.3-macOKSep 07 2024

Exports:import.mttRNAdbimport.mttRNAdb.idimport.tRNAdbimport.tRNAdb.blastimport.tRNAdb.idistRNAdbGRangesopen_mtdbIDopen_tdbIDTRNA_DB_URLTRNA_DB_URL_MTtRNAdb2GFF

Dependencies:askpassBiocGenericsBiostringsclicolorspacecrayoncurlfansifarverGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrhttr2IRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmimeModstringsmunsellnlmeopensslpillarpkgconfigR6rappdirsRColorBrewerrlangS4VectorsscalesstringistringrStructstringssystibbletRNAUCSC.utilsutf8vctrsviridisLitewithrxml2XVectorzlibbioc

Importing from to tRNAdb and mitotRNAdb as GRanges

Felix G.M. Ernst

Rendered fromtRNAdbImport.Rmdusingknitr::rmarkdownon Sep 07 2024.

Last update: 2024-01-13
Started: 2018-09-06

Readme and manuals

Help Manual

Help pageTopics
Importing information from the tRNA db as GRanges objectimport.mttRNAdb import.mttRNAdb.blast import.mttRNAdb.id import.tRNAdb import.tRNAdb.blast import.tRNAdb.id tRNAdb2GFF TRNA_DB_URL TRNA_DB_URL_MT
tRNAdb compatibility checkistRNAdbGRanges istRNAdbGRanges,GRanges-method
Open a tRNA db entry in a browseropen_mtdbID open_tdbID
tRNAdbImport: Importing from to tRNAdb and mitotRNAdb as GRangestRNAdbImport