{ "_id": "6aca7efcfe5cc25786e8a43b", "Package": "tRNAdbImport", "Title": "Importing from tRNAdb and mitotRNAdb as GRanges objects", "Version": "1.31.0", "Date": "2024-01-13", "Authors@R": "person(\"Felix G.M.\", \n\"Ernst\",\nemail = \"felix.gm.ernst@outlook.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-5064-0928\"))", "Description": "tRNAdbImport imports the entries of the tRNAdb and mtRNAdb\n(http://trna.bioinf.uni-leipzig.de) as GRanges object.", "License": "GPL-3 + file LICENSE", "Encoding": "UTF-8", "biocViews": "Software, Visualization, DataImport", "Collate": "'tRNAdbImport.R' 'AllGenerics.R' 'tRNAdbImport-checks.R'\n'tRNAdbImport-import.R' 'tRNAdbImport-open.R' 'utils.R'", "VignetteBuilder": "knitr", "RoxygenNote": "7.2.3", "BugReports": "https://github.com/FelixErnst/tRNAdbImport/issues", "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:49:04 UTC", "RemoteUrl": "https://github.com/bioc/tRNAdbImport", "RemoteRef": "HEAD", "RemoteSha": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 16:31:54 UTC", "User": "root" }, "Author": "Felix G.M. Ernst [aut, cre] (ORCID:\n)", "Maintainer": "Felix G.M. Ernst ", "_user": "bioc", "_type": "src", "_file": "tRNAdbImport_1.31.0.tar.gz", "_fileid": "https://r2.ropensci.org/4e998c72ba7997e06b603fa025ad219d9ed8fa92a17c1a9e38792efcbc03b3b1", "_filesize": 134758, "_sha256": "4e998c72ba7997e06b603fa025ad219d9ed8fa92a17c1a9e38792efcbc03b3b1", "_expires": "2027-01-18T18:07:52.000Z", "_created": "2026-10-10T16:31:54.000Z", "_published": "2026-10-10T18:07:54.883Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 2, "note": 6 }, "_upstream": "https://github.com/bioc/tRNAdbImport", "_commit": { "id": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380544 }, "_maintainer": { "name": "Felix G.M. Ernst", "email": "felix.gm.ernst@outlook.com", "login": "felixernst", "description": "", "uuid": 17824332, "orcid": "0000-0001-5064-0928" }, "_distro": "resolute", "_jobs": [ { "job": 114259684469, "time": 163, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11676490381" }, { "job": 114259684466, "time": 247, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11675886966" }, { "job": 114259684519, "time": 268, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11676136016" }, { "job": 114259684509, "time": 142, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11678451723" }, { "job": 114259684536, "time": 145, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11677623031" }, { "job": 114258941728, "time": 218, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11675596850" }, { "job": 114259684492, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11676415502" }, { "job": 114259684582, "time": 160, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11675911845" }, { "job": 114259684602, "time": 152, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11675851856" }, { "job": 114259684553, "time": 171, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11676455549" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6", "role": "Depends" }, { "package": "GenomicRanges", "role": "Depends" }, { "package": "Modstrings", "role": "Depends" }, { "package": "Structstrings", "role": "Depends" }, { "package": "tRNA", "role": "Depends" }, { "package": "Biostrings", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "httr2", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "BiocGenerics", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "httptest", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "rtracklayer", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.31.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.30.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "software", "visualization", "dataimport", "bioconductor", "sequences", "structures", "trna", "trna-genes", "trna-sequences", "trnadb" ], "_stars": 1, "_contributors": [ { "user": "felixernst", "count": 69, "uuid": 17824332 }, { "user": "nturaga", "count": 14, "uuid": 2746443 }, { "user": "jwokaty", "count": 12, "uuid": 1744257 }, { "user": "vobencha", "count": 2, "uuid": 2466173 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 487, "source": "https://www.bioconductor.org/packages/stats/bioc/tRNAdbImport" }, "_devurl": "https://github.com/felixernst/trnadbimport", "_searchresults": 4, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/tRNAdbImport.html", "LICENSE" ], "_homeurl": "https://github.com/felixernst/trnadbimport", "_realowner": "bioc", "_cranurl": false, "_exports": [ "import.mttRNAdb", "import.mttRNAdb.id", "import.tRNAdb", "import.tRNAdb.blast", "import.tRNAdb.id", "istRNAdbGRanges", "open_mtdbID", "open_tdbID", "TRNA_DB_URL", "TRNA_DB_URL_MT", "tRNAdb2GFF" ], "_help": [ { "page": "import.tRNAdb", "title": "Importing information from the tRNA db as GRanges object", "topics": [ "import.mttRNAdb", "import.mttRNAdb.blast", "import.mttRNAdb.id", "import.tRNAdb", "import.tRNAdb.blast", "import.tRNAdb.id", "tRNAdb2GFF", "TRNA_DB_URL", "TRNA_DB_URL_MT" ] }, { "page": "istRNAdbGRanges", "title": "tRNAdb compatibility check", "topics": [ "istRNAdbGRanges", "istRNAdbGRanges,GRanges-method" ] }, { "page": "open_tdbID", "title": "Open a tRNA db entry in a browser", "topics": [ "open_mtdbID", "open_tdbID" ] }, { "page": "tRNAdbImport", "title": "tRNAdbImport: Importing from to tRNAdb and mitotRNAdb as GRanges", "topics": [ "tRNAdbImport" ] } ], "_readme": "https://github.com/bioc/tRNAdbImport/raw/HEAD/README.md", "_rundeps": [ "askpass", "BiocGenerics", "Biostrings", "cli", "cpp11", "crayon", "curl", "farver", "generics", "GenomicRanges", "ggplot2", "glue", "gtable", "httr2", "IRanges", "isoband", "labeling", "lifecycle", "magrittr", "Modstrings", "openssl", "R6", "RColorBrewer", "rlang", "S4Vectors", "S7", "scales", "Seqinfo", "stringi", "stringr", "Structstrings", "sys", "tRNA", "vctrs", "viridisLite", "withr", "xml2", "XVector" ], "_vignettes": [ { "source": "tRNAdbImport.Rmd", "filename": "tRNAdbImport.html", "title": "Importing from to tRNAdb and mitotRNAdb as GRanges", "author": "Felix G.M. Ernst", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Status 2024", "Importing as GRanges", "Importing as GRanges from the RNA database", "Further analysis", "Session info", "References" ], "created": "2018-09-06 19:27:43", "modified": "2024-01-13 14:36:38", "commits": 11 } ], "_score": 4.954242509439325, "_indexed": true, "_nocasepkg": "trnadbimport", "_universes": [ "bioc", "felixernst" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.31.0", "date": "2026-10-10T16:35:06.000Z", "distro": "resolute", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/15655bcc7f828d2a0353ed2cab9f4286edebb1b6b038150617264800794543ae", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" }, { "r": "4.6.1", "os": "linux", "version": "1.31.0", "date": "2026-10-10T16:35:34.000Z", "distro": "resolute", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/34fce3ab1132af8263c0faba32ee9343af41cf3cfbd5b05944ad5d6b435305d0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" }, { "r": "4.5.3", "os": "mac", "version": "1.31.0", "date": "2026-10-10T18:06:14.000Z", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/cf5813e50e14d298e50bc04c5ac3931fae1ef1449cc9b2644251333338c183b6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" }, { "r": "4.6.1", "os": "mac", "version": "1.31.0", "date": "2026-10-10T18:06:19.000Z", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/952eb79b3a135597a3bb192cf17729645f80d003156f04f732694b5e85e28ff9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" }, { "r": "4.6.0", "os": "wasm", "version": "1.31.0", "date": "2026-10-10T16:34:17.000Z", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/ead79d52c7a04c4ccfb07678193c3cea1ac6257b5ded81ca0cb30c494ea05529", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" }, { "r": "4.7.0", "os": "win", "version": "1.31.0", "date": "2026-10-10T16:33:30.000Z", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/b43395577eb2fe9eda74e1ac3003e33eb0b7ad0ec3da6c52ba94ff865357c61a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" }, { "r": "4.5.3", "os": "win", "version": "1.31.0", "date": "2026-10-10T16:33:29.000Z", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/7931578359568eb152eb009713796c7699d98ed54c1027a068010b51ce09a4c5", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" }, { "r": "4.6.1", "os": "win", "version": "1.31.0", "date": "2026-10-10T16:33:39.000Z", "commit": "1d1e251a2697c1d5e0d8ca04552c3b85f4239b71", "fileid": "https://r2.ropensci.org/c7850dca7a6961aa86500b74cefb2708607a3b664b64ffb2396353aeed270e31", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38067786732" } ] }