Package: spoon 1.9.0

Kinnary Shah

spoon: Address the Mean-variance Relationship in Spatial Transcriptomics Data

This package addresses the mean-variance relationship in spatially resolved transcriptomics data. Precision weights are generated for individual observations using Empirical Bayes techniques. These weights are used to rescale the data and covariates, which are then used as input in spatially variable gene detection tools.

Authors:Kinnary Shah [aut, cre], Boyi Guo [aut], Stephanie C. Hicks [aut]

spoon_1.9.0.tar.gz
spoon_1.9.0.zip(r-4.7)spoon_1.9.0.zip(r-4.6)spoon_1.9.0.zip(r-4.5)
spoon_1.9.0.tgz(r-4.6-any)spoon_1.9.0.tgz(r-4.5-any)
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spoon_1.9.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
spoon/json (API)
NEWS

# Install 'spoon' in R:

install.packages('spoon', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kinnaryshah/spoon/issues

On BioConductor:spoon-1.9.0(bioc 3.24)spoon-1.8.0(bioc 3.23)

spatial singlecell transcriptomics geneexpression preprocessing

4.34 score 22 scripts 236 downloads 2 exports 75 dependencies

Last updated from:a0a9ed99f5. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	213
linux-devel-x86_64	WARNING	464
source / vignettes	OK	347
linux-release-x86_64	WARNING	487
macos-release-arm64	WARNING	343
macos-oldrel-arm64	WARNING	238
windows-devel	WARNING	575
windows-release	WARNING	544
windows-oldrel	WARNING	542
wasm-release	OK	160