Package: spoon 1.3.1

Kinnary Shah

spoon: Address the Mean-variance Relationship in Spatial Transcriptomics Data

This package addresses the mean-variance relationship in spatially resolved transcriptomics data. Precision weights are generated for individual observations using Empirical Bayes techniques. These weights are used to rescale the data and covariates, which are then used as input in spatially variable gene detection tools.

Authors:Kinnary Shah [aut, cre], Boyi Guo [aut], Stephanie C. Hicks [aut]

spoon_1.3.1.tar.gz
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spoon.pdf |spoon.html✨
spoon/json (API)
NEWS

# Install 'spoon' in R:

install.packages('spoon', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/kinnaryshah/spoon/issues

On BioConductor:spoon-1.3.1(bioc 3.21)spoon-1.2.0(bioc 3.20)

spatial singlecell transcriptomics geneexpression preprocessing

5.07 score 18 scripts 124 downloads 2 exports 82 dependencies

Last updated 1 months agofrom:3132965748. Checks:OK: 3 ERROR: 2 NOTE: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 19 2024
R-4.5-win	ERROR	Dec 19 2024
R-4.5-linux	ERROR	Dec 19 2024
R-4.4-win	NOTE	Dec 19 2024
R-4.4-mac	NOTE	Dec 19 2024
R-4.3-win	OK	Oct 01 2024
R-4.3-mac	OK	Oct 01 2024