Introduction | Setting up the data | Running t-SNE | Projecting new data into an existing embedding | Session information
Package: snifter 1.23.0
Alan OCallaghan
snifter: R wrapper for the python openTSNE library
Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) <doi:10.1101/731877> and the algorithm described by Linderman et al. (2018) <doi:10.1038/s41592-018-0308-4>.
Authors:
snifter_1.23.0.tar.gz
snifter_1.23.0.zip(r-4.7-any)snifter_1.23.0.zip(r-4.6-any)snifter_1.23.0.zip(r-4.5-any)
snifter_1.23.0.tgz(r-4.6-any)snifter_1.23.0.tgz(r-4.5-any)
snifter_1.23.0.tar.gz(r-4.7-any)snifter_1.23.0.tar.gz(r-4.6-any)
snifter_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
snifter/json (API)
| # Install 'snifter' in R: |
| install.packages('snifter', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/alanocallaghan/snifter/issues
On BioConductor:snifter-1.23.0(bioc 3.24)snifter-1.22.0(bioc 3.23)
dimensionreductionvisualizationsoftwaresinglecellsequencing
Last updated from:4ce6f5f1df. Checks:8 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 149 | ||
| linux-devel | NOTE | 1110 | ||
| source / vignettes | OK | 1103 | ||
| linux-release | NOTE | 1216 | ||
| macos-release | NOTE | 564 | ||
| macos-oldrel | NOTE | 633 | ||
| windows-devel | NOTE | 229 | ||
| windows-release | NOTE | 209 | ||
| windows-oldrel | NOTE | 195 | ||
| wasm-release | OK | 123 |
Dependencies:assertthatbasiliskdir.expiryfilelockhereirlbajsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Project new data into an existing t-SNE embedding object. | project |
| snifter: fast interpolated t-SNE in R | fitsne snifter |
