# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "snifter" in publications use:'
type: software
license: GPL-3.0-only
title: 'snifter: R wrapper for the python openTSNE library'
version: 1.15.0
doi: 10.1101/731877
abstract: Provides an R wrapper for the implementation of FI-tSNE from the python
  package openTNSE. See Poličar et al. (2019) <https://doi.org/10.1101/731877> and
  the algorithm described by Linderman et al. (2018) <https://doi.org/10.1038/s41592-018-0308-4>.
authors:
- family-names: O'Callaghan
  given-names: Alan
  email: alan.ocallaghan@outlook.com
- family-names: Lun
  given-names: Aaron
preferred-citation:
  type: article
  title: 'openTSNE: a modular Python library for t-SNE dimensionality reduction and
    embedding'
  authors:
  - family-names: Poli\v car
    given-names: Pavlin G.
  - family-names: Stra\v zar
    given-names: Martin
  - family-names: Zupan
    given-names: Bla\v z
  year: '2019'
  doi: 10.1101/731877
  publisher:
    name: Cold Spring Harbor Laboratory
  url: https://www.biorxiv.org/content/early/2019/08/13/731877
  journal: bioRxiv
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Alanocallaghan/snifter
url: https://bioconductor.org/packages/snifter
date-released: '2023-09-03'
contact:
- family-names: O'Callaghan
  given-names: Alan
  email: alan.ocallaghan@outlook.com
references:
- type: article
  title: Fast interpolation-based t-SNE for improved visualization of single-cell
    RNA-seq data
  authors:
  - family-names: Linderman
    given-names: George C.
  - family-names: Rachh
    given-names: Manas
  - family-names: Hoskins
    given-names: Jeremy G.
  - family-names: Steinerberger
    given-names: Stefan
  - family-names: Kluger
    given-names: Yuval
  year: '2019'
  doi: 10.1038/s41592-018-0308-4
  url: https://www.nature.com/articles/s41592-018-0308-4
  journal: Nature Methods
- type: article
  title: Accelerating t-SNE using Tree-Based Algorithms
  authors:
  - family-names: Maaten
    given-names: Laurens
    name-particle: van der
  journal: Journal of Machine Learning Research
  year: '2014'
  volume: '15'
  issue: '93'
  url: http://jmlr.org/papers/v15/vandermaaten14a.html
  start: 3221-3245