{
  "_id": "6adb27cc1b55136903c500cb",
  "Package": "snifter",
  "Type": "Package",
  "Title": "R wrapper for the python openTSNE library",
  "Version": "1.23.0",
  "Date": "2025-07-17",
  "Authors@R": "c(\nperson(\"Alan\", \"O'Callaghan\", role = c(\"aut\", \"cre\"), email = \"alan.ocallaghan@outlook.com\"),\nperson(\"Aaron\", \"Lun\", role = c(\"aut\")))",
  "Description": "Provides an R wrapper for the implementation of FI-tSNE\nfrom the python package openTNSE. See Poličar et al. (2019)\n<doi:10.1101/731877> and the algorithm described by Linderman\net al. (2018) <doi:10.1038/s41592-018-0308-4>.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.2.1",
  "VignetteBuilder": "knitr",
  "biocViews": "DimensionReduction, Visualization, Software, SingleCell,\nSequencing",
  "StagedInstall": "no",
  "BugReports": "https://github.com/Alanocallaghan/snifter/issues",
  "URL": "https://bioconductor.org/packages/snifter",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libpng-dev python3",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:53:23 UTC",
  "RemoteUrl": "https://github.com/bioc/snifter",
  "RemoteRef": "HEAD",
  "RemoteSha": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-23 09:05:38 UTC",
    "User": "root"
  },
  "Author": "Alan O'Callaghan [aut, cre],\nAaron Lun [aut]",
  "Maintainer": "Alan O'Callaghan <alan.ocallaghan@outlook.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "snifter_1.23.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/1486b090bba3facf4890094b3cc997f7e407f94005e69fc70a4f3a2b35d62eb2",
  "_filesize": 481366,
  "_sha256": "1486b090bba3facf4890094b3cc997f7e407f94005e69fc70a4f3a2b35d62eb2",
  "_expires": "2027-01-31T09:24:26.000Z",
  "_created": "2026-10-23T09:05:38.000Z",
  "_published": "2026-10-23T09:24:28.675Z",
  "_upstream": "https://github.com/bioc/snifter",
  "_status": "success",
  "_maintainer": {
    "name": "Alan OCallaghan",
    "email": "alan.ocallaghan@outlook.com",
    "login": "alanocallaghan",
    "description": "Biomedical data - stats - programming",
    "uuid": 10779688
  },
  "_jobs": [
    {
      "job": 120333653740,
      "time": 150,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12490852967"
    },
    {
      "job": 120333653836,
      "time": 1082,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12490659508"
    },
    {
      "job": 120333653767,
      "time": 990,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12491966090"
    },
    {
      "job": 120333653745,
      "time": 635,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12490978801"
    },
    {
      "job": 120333653781,
      "time": 862,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12492110580"
    },
    {
      "job": 120324469814,
      "time": 1385,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12490952147"
    },
    {
      "job": 120333653843,
      "time": 98,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12491231391"
    },
    {
      "job": 120333653895,
      "time": 232,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12491360797"
    },
    {
      "job": 120333653899,
      "time": 232,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12491077217"
    },
    {
      "job": 120333653766,
      "time": 194,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12491535525"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 5
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144",
  "_commit": {
    "id": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777380803
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "basilisk",
      "role": "Imports"
    },
    {
      "package": "reticulate",
      "role": "Imports"
    },
    {
      "package": "irlba",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "assertthat",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2026-15",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.23.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.22.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "dimensionreduction",
    "visualization",
    "software",
    "singlecell",
    "sequencing"
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "alanocallaghan",
      "count": 98,
      "uuid": 10779688
    },
    {
      "user": "jwokaty",
      "count": 12,
      "uuid": 1744257
    },
    {
      "user": "nturaga",
      "count": 8,
      "uuid": 2746443
    },
    {
      "user": "hpages",
      "count": 1,
      "uuid": 8810451
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 479,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 1365,
    "source": "https://www.bioconductor.org/packages/stats/bioc/snifter"
  },
  "_devurl": "https://github.com/alanocallaghan/snifter",
  "_searchresults": 12,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/snifter.html"
  ],
  "_homeurl": "https://github.com/alanocallaghan/snifter",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "fitsne",
    "project"
  ],
  "_help": [
    {
      "page": "project",
      "title": "Project new data into an existing t-SNE embedding object.",
      "topics": [
        "project"
      ]
    },
    {
      "page": "snifter",
      "title": "snifter: fast interpolated t-SNE in R",
      "topics": [
        "fitsne",
        "snifter"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/snifter/raw/HEAD/README.md",
  "_rundeps": [
    "assertthat",
    "basilisk",
    "dir.expiry",
    "filelock",
    "here",
    "irlba",
    "jsonlite",
    "lattice",
    "Matrix",
    "png",
    "rappdirs",
    "Rcpp",
    "RcppTOML",
    "reticulate",
    "rlang",
    "rprojroot",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "snifter.Rmd",
      "filename": "snifter.html",
      "title": "Introduction to snifter",
      "author": "Alan O'Callaghan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Setting up the data",
        "Running t-SNE",
        "Projecting new data into an existing embedding",
        "Session information"
      ],
      "created": "2020-07-17 18:23:38",
      "modified": "2023-09-03 07:42:58",
      "commits": 10
    }
  ],
  "_score": 5.645677661583387,
  "_indexed": true,
  "_nocasepkg": "snifter",
  "_universes": [
    "bioc",
    "alanocallaghan"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.23.0",
      "date": "2026-10-23T09:08:23.000Z",
      "distro": "resolute",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/52f3633aaa28478378a65eef8227feeb000244bcbaacab9437493cf20ff9f1f6",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.23.0",
      "date": "2026-10-23T09:09:30.000Z",
      "distro": "resolute",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/995dd679a3fbf47e0553eb9d0ee90020c780fa2722f2ab7d0009b0fd9b46e379",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.23.0",
      "date": "2026-10-23T09:07:28.000Z",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/5826de2d1c2abcc5250da3449f23cbca8e804e003a3b77e5ae40d39f7785ae40",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.23.0",
      "date": "2026-10-23T09:07:50.000Z",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/53e742a325c3c416421c58840a005e2d1b59ad754a635512f90835e744adee43",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.23.0",
      "date": "2026-10-23T09:07:41.000Z",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/219c7340be15a3e2774e958d6f1fd4b7faacd31a06fa55f2a3e1e38599a2b762",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-10-23T09:07:11.000Z",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/267fec04e82e2a8a637939d170b783e67242dac643688cd3e758ad32c6c951fc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-10-23T09:07:26.000Z",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/b8507dff1b09a18075db7872f4dd6eaddcfa044b933ce50b7a9b8e95ecb40f9c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.23.0",
      "date": "2026-10-23T09:07:03.000Z",
      "commit": "4ce6f5f1df0774b23b2c00733648f56f4ebc5f35",
      "fileid": "https://r2.ropensci.org/ee8b4db4a0b431fb7c2353037780ac2bc674d2dc4c02a116537f5d55bec1b362",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39926573144"
    }
  ]
}