Package: panoramic 0.99.3

Jacob Chang

panoramic: Meta-Analysis of Spatial Colocalization in Spatial Omics

Provides a pipeline for quantifying and meta-analyzing spatial colocalization between cell types in spatial omics experiments. The package prepares SpatialExperiment inputs, computes Loh-bootstrap spatial summary functions (e.g. L- and K-functions) for cell-type pairs across samples, and performs random-effects meta-analysis to assess group-level differences in spatial colocalization.

Authors:Jacob Chang [aut, cre, fnd]

panoramic_0.99.3.tar.gz
panoramic_0.99.3.zip(r-4.7)panoramic_0.99.3.zip(r-4.6)panoramic_0.99.3.zip(r-4.5)
panoramic_0.99.3.tgz(r-4.6-any)panoramic_0.99.3.tgz(r-4.5-any)
panoramic_0.99.3.tar.gz(r-4.7-any)panoramic_0.99.3.tar.gz(r-4.6-any)
panoramic_0.99.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
panoramic/json (API)
NEWS

# Install 'panoramic' in R:
install.packages('panoramic', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/plevritis-lab/panoramic/issues

On BioConductor:panoramic-0.99.3(bioc 3.24)

softwarespatialsinglecell

4.54 score 3 scripts 13 exports 118 dependencies

Last updated from:ca3f3cacb6. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE157
linux-devel-x86_64OK247
source / vignettesOK272
linux-release-x86_64OK261
macos-release-arm64OK164
macos-oldrel-arm64OK151
windows-develOK148
windows-releaseOK132
windows-oldrelOK134
wasm-releaseOK172

Exports:create_spatial_networkpanoramicpanoramic_analyzepanoramic_extract_contrastpanoramic_meta_mvpanoramic_preparepanoramic_simulate_datasetpanoramic_simulate_spepanoramic_spatialstatsplot_forestplot_representative_samplesplot_spatial_networkplot_volcano

Dependencies:abindaskpassbase64encBHBiobaseBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemclassclassIntclicodetoolsconcavemancpp11curlDBIdbplyrDelayedArraydeldirdigestdplyre1071farverfastmapfilelockformatRfutile.loggerfutile.optionsgenericsGenomicRangesggforceggplot2ggraphggrepelgluegoftestgraphlayoutsgridExtragtablehttr2igraphIRangesisobandjsonliteKernSmoothlabelinglambda.rlatticelifecyclemagickmagrittrMASSmathjaxrMatrixMatrixGenericsmatrixStatsmemoisemetadatmetafornlmenumDerivopensslpbapplypillarpkgconfigpolyclipproxypurrrR6rappdirsRColorBrewerRcppRcppArmadillorjsonrlangRSQLites2S4ArraysS4VectorsS7scalesSeqinfosfSingleCellExperimentsnowSparseArraySpatialExperimentspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrSummarizedExperimentsyssystemfontstensortibbletidygraphtidyrtidyselecttweenrunitsutf8V8vctrsviridisviridisLitewithrwkXVector

PANORAMIC tutorial

Rendered fromtutorial.Rmdusingknitr::rmarkdownon May 19 2026.

Last update: 2026-04-21
Started: 2025-12-01