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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "panoramic" in publications use:'
type: software
license: MIT
title: 'panoramic: Meta-Analysis of Spatial Colocalization in Spatial Omics'
version: 0.99.3
doi: 10.1101/2025.09.18.677135
abstract: Provides a pipeline for quantifying and meta-analyzing spatial colocalization
  between cell types in spatial omics experiments. The package prepares SpatialExperiment
  inputs, computes Loh-bootstrap spatial summary functions (e.g. L- and K-functions)
  for cell-type pairs across samples, and performs random-effects meta-analysis to
  assess group-level differences in spatial colocalization.
authors:
- family-names: Chang
  given-names: Jacob
  email: jachang4@stanford.edu
  orcid: https://orcid.org/0000-0002-3719-7949
preferred-citation:
  type: article
  title: Multi-Sample and Multi-Group Spatial Colocalization Analysis Using PANORAMIC
  authors:
  - family-names: Chang
    given-names: Jacob
    email: jachang4@stanford.edu
    orcid: https://orcid.org/0000-0002-3719-7949
  - family-names: Espin Perez
    given-names: Almudena
  - family-names: Molina
    given-names: Perla
  - family-names: Khurana
    given-names: Rohit
  - family-names: Zhang
    given-names: Weiruo
  - family-names: Tian
    given-names: Lu
  - family-names: Plevritis
    given-names: Sylvia
  year: '2025'
  journal: bioRxiv
  notes: Preprint
  url: https://www.biorxiv.org/content/10.1101/2025.09.18.677135v2
  doi: 10.1101/2025.09.18.677135
repository: https://bioc.r-universe.dev
repository-code: https://github.com/plevritis-lab/panoramic
commit: ca3f3cacb6ccdaca6b0052bea79e83f47773b813
url: https://github.com/plevritis-lab/panoramic
date-released: '2026-04-21'
contact:
- family-names: Chang
  given-names: Jacob
  email: jachang4@stanford.edu
  orcid: https://orcid.org/0000-0002-3719-7949