Package: panoramic
Title: Meta-Analysis of Spatial Colocalization in Spatial Omics
Version: 0.99.3
Authors@R: person("Jacob", "Chang", email = "jachang4@stanford.edu", role = c("aut", "cre", "fnd"), comment = c(ORCID = "0000-0002-3719-7949"))
Description: Provides a pipeline for quantifying and meta-analyzing
        spatial colocalization between cell types in spatial omics
        experiments. The package prepares SpatialExperiment inputs,
        computes Loh-bootstrap spatial summary functions (e.g. L- and
        K-functions) for cell-type pairs across samples, and performs
        random-effects meta-analysis to assess group-level differences
        in spatial colocalization.
URL: https://github.com/plevritis-lab/panoramic
BugReports: https://github.com/plevritis-lab/panoramic/issues
License: MIT + file LICENSE
Depends: R (>= 4.5)
Imports: dplyr, ggplot2, ggrepel, igraph, tidygraph, ggraph, rlang,
        S4Vectors, SummarizedExperiment, spatstat.geom,
        spatstat.explore, BiocParallel, SpatialExperiment, concaveman,
        metafor, withr, matrixStats, spatstat.utils
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
biocViews: Software, Spatial, SingleCell
Config/pak/sysreqs: libabsl-dev cmake libfontconfig1-dev
        libfreetype6-dev libgdal-dev gdal-bin libgeos-dev libglpk-dev
        libmagick++-dev gsfonts libicu-dev libxml2-dev libssl-dev
        libproj-dev libsqlite3-dev libudunits2-dev libnode-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-21 06:27:37 UTC
RemoteUrl: https://github.com/bioc/panoramic
RemoteRef: HEAD
RemoteSha: ca3f3cacb6ccdaca6b0052bea79e83f47773b813
NeedsCompilation: no
Packaged: 2026-07-18 05:05:29 UTC; root
Author: Jacob Chang [aut, cre, fnd] (ORCID:
    <https://orcid.org/0000-0002-3719-7949>)
Maintainer: Jacob Chang <jachang4@stanford.edu>