Package: iSEEid 0.99.1

Federico Marini

iSEEid: iSEE extension to assist in identifying sets of samples/cells

This package provides a dedicated panel to assist the sample identification within a single iSEE web-application. The main functionality of this package can be adopted to efficiently select samples (e.g. cells) that need to be identified and annotated in the analysis workflow. With iSEEid, the iSEE framework fully qualifies to be an ideal companion for assigning appropriate labels to large omics datasets.

Authors:Federico Marini [aut, cre], Kevin Rue-Albrecht [aut], Charlotte Soneson [aut]

iSEEid_0.99.1.tar.gz
iSEEid_0.99.1.zip(r-4.7)iSEEid_0.99.1.zip(r-4.6)iSEEid_0.99.1.zip(r-4.5)
iSEEid_0.99.1.tgz(r-4.6-any)iSEEid_0.99.1.tgz(r-4.5-any)
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iSEEid_0.99.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
iSEEid/json (API)

# Install 'iSEEid' in R:

install.packages('iSEEid', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/isee/iseeid/issues

On BioConductor:iSEEid-0.99.1(bioc 3.24)

cellbasedassays clustering dimensionreduction featureextraction geneexpression gui immunooncology shinyapps singlecell transcription transcriptomics visualization

4.95 score 2 stars 1 scripts 12 exports 100 dependencies

Last updated from:456e353054. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	270
linux-devel-x86_64	NOTE	492
source / vignettes	OK	387
linux-release-x86_64	NOTE	472
macos-release-arm64	NOTE	259
macos-oldrel-arm64	NOTE	366
windows-devel	NOTE	1383
windows-release	NOTE	1432
windows-oldrel	NOTE	1301
wasm-release	OK	278

Exports:.createObservers .defineDataInterface .defineOutput .definePanelTour .fullName .generateOutput .hideInterface .multiSelectionResponsive .panelColor .renderOutput initialize SampleIdentificationCenter

Dependencies:abind base64enc Biobase BiocGenerics bslib cachem circlize cli clue cluster codetools colorspace colourpicker commonmark ComplexHeatmap cpp11 crayon crosstalk DelayedArray digest doParallel DT evaluate farver fastmap fontawesome foreach fs generics GenomicRanges GetoptLong ggplot2 ggrepel GlobalOptions glue gtable highr htmltools htmlwidgets httpuv igraph IRanges iSEE isoband iterators jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle listviewer magrittr Matrix MatrixGenerics matrixStats memoise mgcv mime miniUI nlme otel pkgconfig png promises R6 rappdirs RColorBrewer Rcpp rintrojs rjson rlang rmarkdown S4Arrays S4Vectors S7 sass scales Seqinfo shape shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment sourcetools SparseArray SummarizedExperiment tinytex vctrs vipor viridisLite withr xfun xtable XVector yaml

Introduction to iSEEid - Using iSEE to annotate single cells

Rendered fromIntroduction_to_iSEEid.Rmdusingknitr::rmarkdown

Last update: 2026-06-29
Started: 2024-09-02

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The SampleIdentificationCenter class	.createObservers,SampleIdentificationCenter-method .defineDataInterface,SampleIdentificationCenter-method .defineOutput,SampleIdentificationCenter-method .definePanelTour,SampleIdentificationCenter-method .fullName,SampleIdentificationCenter-method .generateOutput,SampleIdentificationCenter-method .hideInterface,SampleIdentificationCenter-method .multiSelectionResponsive,SampleIdentificationCenter-method .panelColor,SampleIdentificationCenter-method .renderOutput,SampleIdentificationCenter-method initialize,SampleIdentificationCenter-method SampleIdentificationCenter SampleIdentificationCenter-class

Help page

Topics

The SampleIdentificationCenter class

.createObservers,SampleIdentificationCenter-method .defineDataInterface,SampleIdentificationCenter-method .defineOutput,SampleIdentificationCenter-method .definePanelTour,SampleIdentificationCenter-method .fullName,SampleIdentificationCenter-method .generateOutput,SampleIdentificationCenter-method .hideInterface,SampleIdentificationCenter-method .multiSelectionResponsive,SampleIdentificationCenter-method .panelColor,SampleIdentificationCenter-method .renderOutput,SampleIdentificationCenter-method initialize,SampleIdentificationCenter-method SampleIdentificationCenter SampleIdentificationCenter-class