Package: iSEEid 0.99.1

Federico Marini

iSEEid: iSEE extension to assist in identifying sets of samples/cells

This package provides a dedicated panel to assist the sample identification within a single iSEE web-application. The main functionality of this package can be adopted to efficiently select samples (e.g. cells) that need to be identified and annotated in the analysis workflow. With iSEEid, the iSEE framework fully qualifies to be an ideal companion for assigning appropriate labels to large omics datasets.

Authors:Federico Marini [aut, cre], Kevin Rue-Albrecht [aut], Charlotte Soneson [aut]

iSEEid_0.99.1.tar.gz
iSEEid_0.99.1.zip(r-4.7)iSEEid_0.99.1.zip(r-4.6)iSEEid_0.99.1.zip(r-4.5)
iSEEid_0.99.1.tgz(r-4.6-any)iSEEid_0.99.1.tgz(r-4.5-any)
iSEEid_0.99.1.tar.gz(r-4.7-any)iSEEid_0.99.1.tar.gz(r-4.6-any)
iSEEid_0.99.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
iSEEid/json (API)
NEWS

# Install 'iSEEid' in R:
install.packages('iSEEid', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/isee/iseeid/issues

On BioConductor:iSEEid-0.99.1(bioc 3.24)

cellbasedassaysclusteringdimensionreductionfeatureextractiongeneexpressionguiimmunooncologyshinyappssinglecelltranscriptiontranscriptomicsvisualization

4.78 score 2 stars 1 scripts 12 exports 100 dependencies

Last updated from:2acbe15293. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE266
linux-devel-x86_64NOTE494
source / vignettesOK397
linux-release-x86_64NOTE455
macos-release-arm64NOTE261
macos-oldrel-arm64NOTE303
windows-develNOTE1462
windows-releaseNOTE1471
windows-oldrelNOTE1498
wasm-releaseOK239

Exports:.createObservers.defineDataInterface.defineOutput.definePanelTour.fullName.generateOutput.hideInterface.multiSelectionResponsive.panelColor.renderOutputinitializeSampleIdentificationCenter

Dependencies:abindbase64encBiobaseBiocGenericsbslibcachemcirclizecliclueclustercodetoolscolorspacecolourpickercommonmarkComplexHeatmapcpp11crayoncrosstalkDelayedArraydigestdoParallelDTevaluatefarverfastmapfontawesomeforeachfsgenericsGenomicRangesGetoptLongggplot2ggrepelGlobalOptionsgluegtablehighrhtmltoolshtmlwidgetshttpuvigraphIRangesiSEEisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelistviewermagrittrMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminiUInlmeotelpkgconfigpngpromisesR6rappdirsRColorBrewerRcpprintrojsrjsonrlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfoshapeshinyshinyAceshinydashboardshinyjsshinyWidgetsSingleCellExperimentsourcetoolsSparseArraySummarizedExperimenttinytexvctrsviporviridisLitewithrxfunxtableXVectoryaml

Introduction to iSEEid - Using iSEE to annotate single cells

Federico Marini, Kevin Rue-Albrecht, Charlotte Soneson

Rendered fromIntroduction_to_iSEEid.Rmdusingknitr::rmarkdownon Jun 18 2026.

Last update: 2026-06-16
Started: 2024-09-02

Readme and manuals

Help Manual

Help pageTopics
The SampleIdentificationCenter class.createObservers,SampleIdentificationCenter-method .defineDataInterface,SampleIdentificationCenter-method .defineOutput,SampleIdentificationCenter-method .definePanelTour,SampleIdentificationCenter-method .fullName,SampleIdentificationCenter-method .generateOutput,SampleIdentificationCenter-method .hideInterface,SampleIdentificationCenter-method .multiSelectionResponsive,SampleIdentificationCenter-method .panelColor,SampleIdentificationCenter-method .renderOutput,SampleIdentificationCenter-method initialize,SampleIdentificationCenter-method SampleIdentificationCenter SampleIdentificationCenter-class