{
  "_id": "6ab8d85e99f7aa8c6aa376f2",
  "Package": "iSEEid",
  "Title": "iSEE extension to assist in identifying sets of samples/cells",
  "Version": "0.99.1",
  "Authors@R": "c(\nperson(\"Federico\", \"Marini\", role= c(\"aut\", \"cre\"), email = \"marinif@uni-mainz.de\", comment = c(ORCID = '0000-0003-3252-7758')),\nperson(\"Kevin\", \"Rue-Albrecht\", role = c(\"aut\"), email = \"kevinrue67@gmail.com\", comment = c(ORCID = \"0000-0003-3899-3872\")),\nperson(\"Charlotte\", \"Soneson\", role = c(\"aut\"), email = \"charlottesoneson@gmail.com\", comment = c(ORCID = '0000-0003-3833-2169')))",
  "Description": "This package provides a dedicated panel to assist the\nsample identification within a single iSEE web-application. The\nmain functionality of this package can be adopted to\nefficiently select samples (e.g. cells) that need to be\nidentified and annotated in the analysis workflow. With iSEEid,\nthe iSEE framework fully qualifies to be an ideal companion for\nassigning appropriate labels to large omics datasets.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "URL": "https://github.com/iSEE/iSEEid",
  "BugReports": "https://github.com/iSEE/iSEEid/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "CellBasedAssays, Clustering, DimensionReduction,\nFeatureExtraction, GeneExpression, GUI, ImmunoOncology,\nShinyApps, SingleCell, Transcription, Transcriptomics,\nVisualization",
  "Config/testthat/edition": "3",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "cmake libglpk-dev make libpng-dev libuv1-dev\nlibxml2-dev perl zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-06-29 10:47:16 UTC",
  "RemoteUrl": "https://github.com/bioc/iSEEid",
  "RemoteRef": "HEAD",
  "RemoteSha": "456e3530541ec7425d108af01ab41894c73ecfeb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-09-27 08:10:12 UTC",
    "User": "root"
  },
  "Author": "Federico Marini [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3252-7758>),\nKevin Rue-Albrecht [aut] (ORCID:\n<https://orcid.org/0000-0003-3899-3872>),\nCharlotte Soneson [aut] (ORCID:\n<https://orcid.org/0000-0003-3833-2169>)",
  "Maintainer": "Federico Marini <marinif@uni-mainz.de>",
  "_user": "bioc",
  "_type": "src",
  "_file": "iSEEid_0.99.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/dec8091feb5aa7f29aca5d9c648d11a30656dc99cb35d7079ae5824fc82606c6",
  "_filesize": 617673,
  "_sha256": "dec8091feb5aa7f29aca5d9c648d11a30656dc99cb35d7079ae5824fc82606c6",
  "_expires": "2027-01-05T08:48:29.000Z",
  "_created": "2026-09-27T08:10:12.000Z",
  "_published": "2026-09-27T08:48:30.846Z",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 3
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412",
  "_status": "success",
  "_upstream": "https://github.com/bioc/iSEEid",
  "_commit": {
    "id": "456e3530541ec7425d108af01ab41894c73ecfeb",
    "author": "Federico Marini <marinif@uni-mainz.de>",
    "committer": "Federico Marini <marinif@uni-mainz.de>",
    "message": "Merge branch 'devel' of github.com:iSEE/iSEEid into devel\n",
    "time": 1782730036
  },
  "_maintainer": {
    "name": "Federico Marini",
    "email": "marinif@uni-mainz.de",
    "login": "federicomarini",
    "bluesky": "@federicomarini.bsky.social",
    "linkedin": "in/federico-marini",
    "orcid": "0000-0003-3252-7758",
    "twitter": "@FedeBioinfo",
    "description": "Virchow Fellow, Bioinformatician @ Institute of Medical Biostatistics, Epidemiology and Informatics, Mainz (@imbeimainz)",
    "uuid": 7447478
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 108580873577,
      "time": 244,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10927355637"
    },
    {
      "job": 108580873597,
      "time": 465,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "10926903665"
    },
    {
      "job": 108580873620,
      "time": 582,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10927545565"
    },
    {
      "job": 108580873739,
      "time": 225,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "10927505316"
    },
    {
      "job": 108580873581,
      "time": 339,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10926908463"
    },
    {
      "job": 108579856458,
      "time": 400,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "10926584453"
    },
    {
      "job": 108580873561,
      "time": 236,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "10926953009"
    },
    {
      "job": 108580873632,
      "time": 2243,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "10927717876"
    },
    {
      "job": 108580873594,
      "time": 2117,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "10927277555"
    },
    {
      "job": 108580873602,
      "time": 2198,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "10928150895"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "iSEE",
      "role": "Depends"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "shinyAce",
      "role": "Imports"
    },
    {
      "package": "scRNAseq",
      "role": "Suggests"
    },
    {
      "package": "scater",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "scrapper",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-21",
      "n": 3
    },
    {
      "week": "2026-25",
      "n": 4
    },
    {
      "week": "2026-27",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "0.99.1",
      "bioc": "3.24"
    }
  ],
  "_topics": [
    "cellbasedassays",
    "clustering",
    "dimensionreduction",
    "featureextraction",
    "geneexpression",
    "gui",
    "immunooncology",
    "shinyapps",
    "singlecell",
    "transcription",
    "transcriptomics",
    "visualization"
  ],
  "_stars": 2,
  "_contributors": [
    {
      "user": "federicomarini",
      "count": 66,
      "uuid": 7447478
    },
    {
      "user": "csoneson",
      "count": 10,
      "uuid": 5628952
    },
    {
      "user": "kevinrue",
      "count": 2,
      "uuid": 5769108
    },
    {
      "user": "bisaloo",
      "count": 1,
      "uuid": 10783929
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 468,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 450,
    "source": "https://www.bioconductor.org/packages/stats/bioc/iSEEid"
  },
  "_devurl": "https://github.com/isee/iseeid",
  "_searchresults": 1,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/iSEEid.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE"
  ],
  "_homeurl": "https://github.com/isee/iseeid",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".createObservers",
    ".defineDataInterface",
    ".defineOutput",
    ".definePanelTour",
    ".fullName",
    ".generateOutput",
    ".hideInterface",
    ".multiSelectionResponsive",
    ".panelColor",
    ".renderOutput",
    "initialize",
    "SampleIdentificationCenter"
  ],
  "_help": [
    {
      "page": "SampleIdentificationCenter-class",
      "title": "The SampleIdentificationCenter class",
      "topics": [
        ".createObservers,SampleIdentificationCenter-method",
        ".defineDataInterface,SampleIdentificationCenter-method",
        ".defineOutput,SampleIdentificationCenter-method",
        ".definePanelTour,SampleIdentificationCenter-method",
        ".fullName,SampleIdentificationCenter-method",
        ".generateOutput,SampleIdentificationCenter-method",
        ".hideInterface,SampleIdentificationCenter-method",
        ".multiSelectionResponsive,SampleIdentificationCenter-method",
        ".panelColor,SampleIdentificationCenter-method",
        ".renderOutput,SampleIdentificationCenter-method",
        "initialize,SampleIdentificationCenter-method",
        "SampleIdentificationCenter",
        "SampleIdentificationCenter-class"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/iSEEid/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "base64enc",
    "Biobase",
    "BiocGenerics",
    "bslib",
    "cachem",
    "circlize",
    "cli",
    "clue",
    "cluster",
    "codetools",
    "colorspace",
    "colourpicker",
    "commonmark",
    "ComplexHeatmap",
    "cpp11",
    "crayon",
    "crosstalk",
    "DelayedArray",
    "digest",
    "doParallel",
    "DT",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "foreach",
    "fs",
    "generics",
    "GenomicRanges",
    "GetoptLong",
    "ggplot2",
    "ggrepel",
    "GlobalOptions",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "igraph",
    "IRanges",
    "iSEE",
    "isoband",
    "iterators",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "listviewer",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mgcv",
    "mime",
    "miniUI",
    "nlme",
    "otel",
    "pkgconfig",
    "png",
    "promises",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "rintrojs",
    "rjson",
    "rlang",
    "rmarkdown",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "shape",
    "shiny",
    "shinyAce",
    "shinydashboard",
    "shinyjs",
    "shinyWidgets",
    "SingleCellExperiment",
    "sourcetools",
    "SparseArray",
    "SummarizedExperiment",
    "tinytex",
    "vctrs",
    "vipor",
    "viridisLite",
    "withr",
    "xfun",
    "xtable",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "Introduction_to_iSEEid.Rmd",
      "filename": "Introduction_to_iSEEid.html",
      "title": "Introduction to iSEEid - Using iSEE to annotate single cells",
      "author": "Federico Marini, Kevin Rue-Albrecht, Charlotte Soneson",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Demonstrating the usage of iSEEid",
        "Setting up example data",
        "Launching the app",
        "The SampleIdentificationCenter panel",
        "How to perform annotation within iSEEid",
        "Customizing the initial state for efficient annotation",
        "Session info",
        "Bibliography"
      ],
      "created": "2024-09-02 15:35:17",
      "modified": "2026-06-29 10:47:16",
      "commits": 5
    }
  ],
  "_score": 4.954242509439325,
  "_indexed": true,
  "_nocasepkg": "iseeid",
  "_universes": [
    "bioc",
    "federicomarini",
    "isee"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.99.1",
      "date": "2026-09-27T08:15:07.000Z",
      "distro": "resolute",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/eafa123bee4b1f9459cc2aaf3878f418ef18d6fd992b92ef1702bd934820e45b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.99.1",
      "date": "2026-09-27T08:17:00.000Z",
      "distro": "resolute",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/9251e7048dfa08c76ea302b18bc6370e241ffaede32f933af99e4757d8554768",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.99.1",
      "date": "2026-09-27T08:12:26.000Z",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/a5642055fe62515c0f1c649aa5c4ffa15d94577b2c11fd328d3d0b21c0ce2419",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.99.1",
      "date": "2026-09-27T08:13:14.000Z",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/0700bd2f54deb74344f60a0dd02e6960257bd369adaa80529f92d05485362246",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.99.1",
      "date": "2026-09-27T08:14:35.000Z",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/64f324c8af37aa891e440a183559bc172bae680dffba5093b7c89f52800cb598",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.99.1",
      "date": "2026-09-27T08:44:33.000Z",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/0d201204ee3e3175820ca0c952c5dfaae7e942d6f32b162a7c416249e36294ff",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.99.1",
      "date": "2026-09-27T08:43:23.000Z",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/d979003d9d74232691315d54ca5066458138b018d4b7828d3c75e54405403fbf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.99.1",
      "date": "2026-09-27T08:43:52.000Z",
      "commit": "456e3530541ec7425d108af01ab41894c73ecfeb",
      "fileid": "https://r2.ropensci.org/8faab9d74e259069b3e90e1882e992755f118da6b07e21ebc3ea30ff16766146",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/36305014412"
    }
  ]
}