Package: funOmics 1.7.0

Introduction | Installation | Usage | Loading the Package | Functions get_kegg_sets and short_sets_detail | Examples usage | Main Function: summarize_pathway_level | Summarizing omics data in SummarizedExperiment format from airway into KEGG pathway level functional activity scores | Example usage 1: Summarize airway omics data into dimension-reduction derived activity scores at KEGG pathway level. | Integrating the pathway-level activity scores with the airway SummarizedExperiment object in a MultiAssayExperiment object | Example usage 2: Summarize airway omics data with summary statistics and a minimum size of the KEGG gene sets | Example usage 3: Summarize airway omics data with test statistics | Molecular sets beyond KEGG and omics matrices beyond SummarizedExperiment | Packages & Session information | Contact Information | License