{ "_id": "6a1ae7261d7bb097a09f0d85", "Package": "funOmics", "Title": "Aggregating Omics Data into Higher-Level Functional\nRepresentations", "Version": "1.7.0", "Authors@R": "c(\nperson(\"Elisa\", \"Gomez de Lope\", role = c(\"aut\", \"cre\"), email = \"elisa.gomezdelope@uni.lu\",comment=c(ORCID=\"0000-0002-7115-7393\")),\nperson(\"Enrico\", \"Glaab\", role = \"ctb\", email = \"enrico.glaab@uni.lu\", comment = c(ORCID=\"0000-0003-3977-7469\")))", "Description": "The 'funOmics' package ggregates or summarizes omics data\ninto higher level functional representations such as GO terms\ngene sets or KEGG metabolic pathways. The aggregated data\nmatrix represents functional activity scores that facilitate\nthe analysis of functional molecular sets while allowing to\nreduce dimensionality and provide easier and faster biological\ninterpretations. Coordinated functional activity scores can be\nas informative as single molecules!", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.1", "URL": "https://github.com/elisagdelope/funomics", "BugReports": "https://github.com/elisagdelope/funomics/issues", "VignetteBuilder": "knitr", "VignetteIndexEntry": "funomics_vignette Vignette", "biocViews": "Software, Transcriptomics, Metabolomics, Proteomics,\nPathways, GO, KEGG", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:03:15 UTC", "RemoteUrl": "https://github.com/bioc/funOmics", "RemoteRef": "HEAD", "RemoteSha": "5a5f758fa8f202b7ff5e2f5c43e286ac2fcd8e23", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:36:50 UTC", "User": "root" }, "Author": "Elisa Gomez de Lope [aut, cre] (ORCID:\n),\nEnrico Glaab [ctb] (ORCID: )", "Maintainer": "Elisa Gomez de Lope ", "MD5sum": 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"title": "Aggregates or summarizes omics data into higher-level functional representations that can be interpreted as functional activity scores or measures.", "topics": [ "summarize_pathway_level" ] } ], "_readme": "https://github.com/bioc/funOmics/raw/HEAD/README.md", "_rundeps": [ "AnnotationDbi", "askpass", "Biobase", "BiocGenerics", "BiocManager", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cluster", "codetools", "colorspace", "cpp11", "crayon", "curl", "DBI", "digest", "doParallel", "dplyr", "farver", "fastmap", "foreach", "generics", "ggplot2", "glue", "gridBase", "gtable", "httr", "IRanges", "isoband", "iterators", "jsonlite", "KEGGREST", "labeling", "lifecycle", "magrittr", "memoise", "mime", "NMF", "openssl", "org.Hs.eg.db", "pathifier", "pillar", "pkgconfig", "plyr", "png", "princurve", "R.methodsS3", "R.oo", "R6", "RColorBrewer", "Rcpp", "registry", "reshape2", "rlang", "rngtools", "RSQLite", "S4Vectors", "S7", "scales", "Seqinfo", "stringi", "stringr", "sys", 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