Package: funOmics Title: Aggregating Omics Data into Higher-Level Functional Representations Version: 1.7.0 Authors@R: c( person("Elisa", "Gomez de Lope", role = c("aut", "cre"), email = "elisa.gomezdelope@uni.lu",comment=c(ORCID="0000-0002-7115-7393")), person("Enrico", "Glaab", role = "ctb", email = "enrico.glaab@uni.lu", comment = c(ORCID="0000-0003-3977-7469"))) Description: The 'funOmics' package ggregates or summarizes omics data into higher level functional representations such as GO terms gene sets or KEGG metabolic pathways. The aggregated data matrix represents functional activity scores that facilitate the analysis of functional molecular sets while allowing to reduce dimensionality and provide easier and faster biological interpretations. Coordinated functional activity scores can be as informative as single molecules! License: MIT + file LICENSE Encoding: UTF-8 RoxygenNote: 7.3.1 URL: https://github.com/elisagdelope/funomics BugReports: https://github.com/elisagdelope/funomics/issues Depends: R (>= 4.4.0), NMF Imports: NMF, pathifier, stats, KEGGREST, AnnotationDbi, org.Hs.eg.db, dplyr, stringr Suggests: knitr, rmarkdown, testthat (>= 3.0.0), MultiAssayExperiment, SummarizedExperiment, airway VignetteBuilder: knitr VignetteIndexEntry: funomics_vignette Vignette biocViews: Software, Transcriptomics, Metabolomics, Proteomics, Pathways, GO, KEGG Config/testthat/edition: 3 Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 13:03:15 UTC RemoteUrl: https://github.com/bioc/funOmics RemoteRef: HEAD RemoteSha: 5a5f758fa8f202b7ff5e2f5c43e286ac2fcd8e23 NeedsCompilation: no Packaged: 2026-07-10 06:00:43 UTC; root Author: Elisa Gomez de Lope [aut, cre] (ORCID: ), Enrico Glaab [ctb] (ORCID: ) Maintainer: Elisa Gomez de Lope