Package: fluentGenomics 1.25.0

Stuart Lee

fluentGenomics: A plyranges and tximeta workflow

An extended workflow using the plyranges and tximeta packages for fluent genomic data analysis. Use tximeta to correctly import RNA-seq transcript quantifications and summarize them to gene counts for downstream analysis. Use plyranges for clearly expressing operations over genomic coordinates and to combine results from differential expression and differential accessibility analyses.

Authors:Stuart Lee [aut, cre], Michael Love [aut, ctb]

fluentGenomics_1.25.0.tar.gz
fluentGenomics_1.25.0.zip(r-4.7-any)fluentGenomics_1.25.0.zip(r-4.6-any)fluentGenomics_1.25.0.zip(r-4.5-any)
fluentGenomics_1.25.0.tgz(r-4.6-any)fluentGenomics_1.25.0.tgz(r-4.5-any)
fluentGenomics_1.25.0.tar.gz(r-4.7-any)fluentGenomics_1.25.0.tar.gz(r-4.6-any)
fluentGenomics_1.25.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fluentGenomics/json (API)

# Install 'fluentGenomics' in R:

install.packages('fluentGenomics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sa-lee/fluentgenomics/issues

Datasets:

peaks - Summarised ATAC-seq peaks as a GRanges object

On CRAN:

workflow basicworkflow geneexpressionworkflow atac-seq bioconductor genomics rna-seq

3.80 score 7 stars 1 exports 72 dependencies

Last updated from:fc9849dc92. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.
A new build is currently in progress.

Target	Result	Time
bioc-checks	ERROR	214
linux-devel	WARNING	462
source / vignettes	ERROR	315
linux-release	WARNING	472
macos-release	WARNING	201
macos-oldrel	WARNING	221
windows-devel	WARNING	252
windows-release	WARNING	283
windows-oldrel	WARNING	259
wasm-release	OK	179