Package: fluentGenomics
Type: Package
Title: A plyranges and tximeta workflow
Version: 1.25.0
Authors@R: c(
             person(role = c("aut", "cre"), "Stuart", "Lee", email = "stuart.andrew.lee@gmail.com", comment = c(ORCID = "0000-0003-1179-8436")),
             person(role=c("aut", "ctb"), "Michael", "Love", email = "michaelisaiahlove@gmail.com")
             )
Description: An extended workflow using the plyranges and tximeta
        packages for fluent genomic data analysis. Use tximeta to
        correctly import RNA-seq transcript quantifications and
        summarize them to gene counts for downstream analysis. Use
        plyranges for clearly expressing operations over genomic
        coordinates and to combine results from differential expression
        and differential accessibility analyses.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.0.2
VignetteBuilder: knitr, rmarkdown
Depends: R (>= 4.0)
Imports: plyranges (>= 1.7.7), dplyr, SummarizedExperiment, readr,
        stats, utils
Suggests: knitr, rmarkdown, bookdown, rappdirs, BiocFileCache, DESeq2,
        limma, ggplot2, tidyr, tximeta (>= 1.4.2), macrophage (>=
        1.2.0),
biocViews: Workflow, BasicWorkflow, GeneExpressionWorkflow
Workflow: true
URL: https://github.com/sa-lee/fluentGenomics
BugReports: https://github.com/sa-lee/fluentGenomics/issues
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-10 01:28:01 UTC
RemoteUrl: https://github.com/bioc/fluentGenomics
RemoteRef: HEAD
RemoteSha: fc9849dc926e4666beb9a4924ed2788289e2415e
NeedsCompilation: no
Packaged: 2026-10-01 15:37:54 UTC; root
Author: Stuart Lee [aut, cre] (ORCID: <https://orcid.org/0000-0003-1179-8436>),
  Michael Love [aut, ctb]
Maintainer: Stuart Lee <stuart.andrew.lee@gmail.com>