Package: diggit 1.39.0
Mariano J Alvarez
diggit: Inference of Genetic Variants Driving Cellular Phenotypes
Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm
Authors:
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diggit/json (API)
NEWS
| # Install 'diggit' in R: |
| install.packages('diggit', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:diggit-1.39.0(bioc 3.21)diggit-1.38.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
systemsbiologynetworkenrichmentgeneexpressionfunctionalpredictiongeneregulation
Last updated 2 months agofrom:e13e6e5050. Checks:ERROR: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | FAIL | Nov 29 2024 |
| R-4.5-win | WARNING | Nov 29 2024 |
| R-4.5-linux | WARNING | Nov 29 2024 |
| R-4.4-win | WARNING | Nov 29 2024 |
| R-4.4-mac | WARNING | Nov 29 2024 |
| R-4.3-win | WARNING | Nov 29 2024 |
| R-4.3-mac | WARNING | Nov 29 2024 |
Exports:aqtlconditionalcorrelationdiggitAqtldiggitClassdiggitCNVdiggitConditionaldiggitFcnvdiggitMindydiggitMRdiggitRegulondiggitViperexprsfCNVheadmarinamindyFilteringmutualInfoplotprintshowsummary
Dependencies:askpassbase64encBiobaseBiocGenericsbslibcachemclassclicolorspacecpp11crosstalkcurldata.tabledigestdplyre1071evaluatefansifarverfastmapFNNfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonlitekernlabKernSmoothknitrkslabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemgcvmimemixtoolsmulticoolmunsellmvtnormnlmeopensslpillarpkgconfigplotlypracmapromisesproxypurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalessegmentedstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviperviridisLitewithrxfunyaml
Using DIGGIT
Rendered fromdiggit.Rnwusingutils::Sweaveon Nov 29 2024.Last update: 2021-09-06
Started: 2015-03-13
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Approximate empirical commulative distribution function | aecdf |
| Inference of aQTL | aqtl aqtl,diggit-method |
| Conditional analysis of CNVs | conditional conditional,diggit-method |
| Correlation test | correlation |
| The diggit class | diggit-class diggitClass |
| Inference of functional CNVs | fCNV fCNV,data.frame-method fCNV,diggit-method fCNV,ExpressionSet-method fCNV,matrix-method |
| Inference of Master Regulators | marina marina,diggit-method marina,ExpressionSet-method marina,matrix-method |
| Mutual information | mutualInfo |
| Diggit plot | plot plot,diggit-method |
| Basic methods for class diggit | diggitAqtl diggitAqtl,diggit-method diggitCNV diggitCNV,diggit-method diggitConditional diggitConditional,diggit-method diggitFcnv diggitFcnv,diggit-method diggitMindy diggitMindy,diggit-method diggitMR diggitMR,diggit-method diggitRegulon diggitRegulon,diggit-method diggitViper diggitViper,diggit-method exprs,diggit-method exprs.diggit head,diggit-method head.diggit mindyFiltering mindyFiltering,diggit-method print,diggit-method print.diggit show,diggit-method show.diggit summary,diggit-method summary.diggit |
