Package: diggit 1.45.0

Mariano J Alvarez

diggit: Inference of Genetic Variants Driving Cellular Phenotypes

Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm

Authors:Mariano J Alvarez <[email protected]>

diggit_1.45.0.tar.gz
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diggit_1.45.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
diggit/json (API)
NEWS

# Install 'diggit' in R:
install.packages('diggit', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:diggit-1.45.0(bioc 3.24)diggit-1.44.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

systemsbiologynetworkenrichmentgeneexpressionfunctionalpredictiongeneregulation

3.30 score 5 scripts 370 downloads 22 exports 86 dependencies

Last updated from:5b67144c68. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR171
linux-devel-x86_64WARNING268
source / vignettesERROR270
linux-release-x86_64WARNING260
macos-release-arm64WARNING228
macos-oldrel-arm64WARNING197
windows-develWARNING280
windows-releaseWARNING231
windows-oldrelWARNING252
wasm-releaseOK130

Exports:aqtlconditionalcorrelationdiggitAqtldiggitClassdiggitCNVdiggitConditionaldiggitFcnvdiggitMindydiggitMRdiggitRegulondiggitViperexprsfCNVheadmarinamindyFilteringmutualInfoplotprintshowsummary

Dependencies:askpassbase64encBiobaseBiocGenericsbslibcachemclassclicpp11crosstalkcurldata.tabledigestdplyre1071evaluatefarverfastmapFNNfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonlitekernlabKernSmoothknitrkslabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemgcvmimemixtoolsmulticoolmvtnormnlmeopensslotelpillarpkgconfigplotlypracmapromisesproxypurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalessegmentedstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviperviridisLitewithrxfunyaml

Using DIGGIT

Rendered fromdiggit.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2021-09-06
Started: 2015-03-13

Readme and manuals

Help Manual

Help pageTopics
Approximate empirical commulative distribution functionaecdf
Inference of aQTLaqtl aqtl,diggit-method
Conditional analysis of CNVsconditional conditional,diggit-method
Correlation testcorrelation
The diggit classdiggit-class diggitClass
Inference of functional CNVsfCNV fCNV,data.frame-method fCNV,diggit-method fCNV,ExpressionSet-method fCNV,matrix-method
Inference of Master Regulatorsmarina marina,diggit-method marina,ExpressionSet-method marina,matrix-method
Mutual informationmutualInfo
Diggit plotplot plot,diggit-method
Basic methods for class diggitdiggitAqtl diggitAqtl,diggit-method diggitCNV diggitCNV,diggit-method diggitConditional diggitConditional,diggit-method diggitFcnv diggitFcnv,diggit-method diggitMindy diggitMindy,diggit-method diggitMR diggitMR,diggit-method diggitRegulon diggitRegulon,diggit-method diggitViper diggitViper,diggit-method exprs,diggit-method exprs.diggit head,diggit-method head.diggit mindyFiltering mindyFiltering,diggit-method print,diggit-method print.diggit show,diggit-method show.diggit summary,diggit-method summary.diggit