Overview of DIGGIT | Citation | Installation of diggit package | Example session to analyze the data provided by the diggitdata package | Session information | References
Package: diggit 1.45.0
Mariano J Alvarez
diggit: Inference of Genetic Variants Driving Cellular Phenotypes
Inference of Genetic Variants Driving Cellullar Phenotypes by the DIGGIT algorithm
Authors:
diggit_1.45.0.tar.gz
diggit_1.45.0.zip(r-4.7)diggit_1.45.0.zip(r-4.6)diggit_1.45.0.zip(r-4.5)
diggit_1.45.0.tgz(r-4.6-any)diggit_1.45.0.tgz(r-4.5-any)
diggit_1.45.0.tar.gz(r-4.7-any)diggit_1.45.0.tar.gz(r-4.6-any)
diggit_1.45.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
diggit/json (API)
| # Install 'diggit' in R: |
| install.packages('diggit', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:diggit-1.45.0(bioc 3.24)diggit-1.44.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
systemsbiologynetworkenrichmentgeneexpressionfunctionalpredictiongeneregulation
Last updated from:5b67144c68. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.
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|---|---|---|---|---|
| bioc-checks | ERROR | 176 | ||
| linux-devel-x86_64 | WARNING | 327 | ||
| source / vignettes | ERROR | 427 | ||
| linux-release-x86_64 | WARNING | 278 | ||
| macos-release-arm64 | WARNING | 223 | ||
| macos-oldrel-arm64 | WARNING | 148 | ||
| windows-devel | WARNING | 222 | ||
| windows-release | WARNING | 218 | ||
| windows-oldrel | WARNING | 203 | ||
| wasm-release | OK | 164 |
Exports:aqtlconditionalcorrelationdiggitAqtldiggitClassdiggitCNVdiggitConditionaldiggitFcnvdiggitMindydiggitMRdiggitRegulondiggitViperexprsfCNVheadmarinamindyFilteringmutualInfoplotprintshowsummary
Dependencies:askpassbase64encBiobaseBiocGenericsbslibcachemclassclicpp11crosstalkcurldata.tabledigestdplyre1071evaluatefarverfastmapFNNfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonlitekernlabKernSmoothknitrkslabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmclustmemoisemgcvmimemixtoolsmulticoolmvtnormnlmeopensslotelpillarpkgconfigplotlypracmapromisesproxypurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalessegmentedstringistringrsurvivalsystibbletidyrtidyselecttinytexutf8vctrsviperviridisLitewithrxfunyaml
Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.
Using DIGGIT
Last update: 2021-09-06
Started: 2015-03-13
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Approximate empirical commulative distribution function | aecdf |
| Inference of aQTL | aqtl aqtl,diggit-method |
| Conditional analysis of CNVs | conditional conditional,diggit-method |
| Correlation test | correlation |
| The diggit class | diggit-class diggitClass |
| Inference of functional CNVs | fCNV fCNV,data.frame-method fCNV,diggit-method fCNV,ExpressionSet-method fCNV,matrix-method |
| Inference of Master Regulators | marina marina,diggit-method marina,ExpressionSet-method marina,matrix-method |
| Mutual information | mutualInfo |
| Diggit plot | plot plot,diggit-method |
| Basic methods for class diggit | diggitAqtl diggitAqtl,diggit-method diggitCNV diggitCNV,diggit-method diggitConditional diggitConditional,diggit-method diggitFcnv diggitFcnv,diggit-method diggitMindy diggitMindy,diggit-method diggitMR diggitMR,diggit-method diggitRegulon diggitRegulon,diggit-method diggitViper diggitViper,diggit-method exprs,diggit-method exprs.diggit head,diggit-method head.diggit mindyFiltering mindyFiltering,diggit-method print,diggit-method print.diggit show,diggit-method show.diggit summary,diggit-method summary.diggit |
