{ "_id": "6aca84d8fe5cc25786e8abb2", "Package": "diggit", "Version": "1.45.0", "Date": "2014-08-22", "Title": "Inference of Genetic Variants Driving Cellular Phenotypes", "Author": "Mariano J Alvarez ", "Maintainer": "Mariano J Alvarez ", "Description": "Inference of Genetic Variants Driving Cellullar Phenotypes\nby the DIGGIT algorithm", "License": "file LICENSE", "biocViews": "SystemsBiology, NetworkEnrichment, GeneExpression,\nFunctionalPrediction, GeneRegulation", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:40:44 UTC", "RemoteUrl": "https://github.com/bioc/diggit", "RemoteRef": "HEAD", "RemoteSha": "5b67144c6863e163cea5c2a42d90af28af5488ba", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 17:06:50 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "diggit_1.45.0.tar.gz", "_fileid": "https://r2.ropensci.org/3f01f633ca3e216050cf2b0bb8b11b20d421cb3716c205c505c1ea04ae2e5d7e", "_filesize": 312785, "_sha256": "3f01f633ca3e216050cf2b0bb8b11b20d421cb3716c205c505c1ea04ae2e5d7e", "_expires": "2027-01-18T18:32:54.000Z", "_created": "2026-10-10T17:06:50.000Z", "_published": "2026-10-10T18:32:56.453Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724", "_status": "failure", "_host": "GitHub-Actions", "_bioccheck": { "error": 1, "warning": 4, "note": 12 }, "_upstream": "https://github.com/bioc/diggit", "_commit": { "id": "5b67144c6863e163cea5c2a42d90af28af5488ba", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380044 }, "_maintainer": { "name": "Mariano J Alvarez", "email": "reef103@gmail.com", "login": "reef103", "description": "", "uuid": 31012433 }, "_distro": "resolute", "_jobs": [ { "job": 114266561297, "time": 156, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11676950864" }, { "job": 114266561279, "time": 285, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11677205672" }, { "job": 114266561259, "time": 257, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11676263708" }, { "job": 114266561295, "time": 205, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "11679465158" }, { "job": 114266561256, "time": 240, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11678775415" }, { "job": 114265159112, "time": 414, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "11676855736" }, { "job": 114266561303, "time": 120, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11677090754" }, { "job": 114266561328, "time": 218, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11676955993" }, { "job": 114266561378, "time": 150, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11676591510" }, { "job": 114266561311, "time": 215, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11677245288" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.0.2", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "ks", "role": "Imports" }, { "package": "viper", "version": ">= 1.3.1", "role": "Imports" }, { "package": "parallel", "role": "Imports" }, { "package": "diggitdata", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.45.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.44.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "systemsbiology", "networkenrichment", "geneexpression", "functionalprediction", "generegulation" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 472, "source": "https://www.bioconductor.org/packages/stats/bioc/diggit" }, "_searchresults": 4, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/contents.json", "extra/diggit.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "LICENSE" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "aqtl", "conditional", "correlation", "diggitAqtl", "diggitClass", "diggitCNV", "diggitConditional", "diggitFcnv", "diggitMindy", "diggitMR", "diggitRegulon", "diggitViper", "exprs", "fCNV", "head", "marina", "mindyFiltering", "mutualInfo", "plot", "print", "show", "summary" ], "_help": [ { "page": "aecdf", "title": "Approximate empirical commulative distribution function", "topics": [ "aecdf" ] }, { "page": "aqtl-methods", "title": "Inference of aQTL", "topics": [ "aqtl", "aqtl,diggit-method" ] }, { "page": "conditional-methods", "title": "Conditional analysis of CNVs", "topics": [ "conditional", "conditional,diggit-method" ] }, { "page": "correlation", "title": "Correlation test", "topics": [ "correlation" ] }, { "page": "diggit-class", "title": "The diggit class", "topics": [ "diggit-class", "diggitClass" ] }, { "page": "fcnv-methods", "title": "Inference of functional CNVs", "topics": [ "fCNV", "fCNV,data.frame-method", "fCNV,diggit-method", "fCNV,ExpressionSet-method", "fCNV,matrix-method" ] }, { "page": "marina-methods", "title": "Inference of Master Regulators", "topics": [ "marina", "marina,diggit-method", "marina,ExpressionSet-method", "marina,matrix-method" ] }, { "page": "mutualInfo", "title": "Mutual information", "topics": [ "mutualInfo" ] }, { "page": "diggit-plot", "title": "Diggit plot", "topics": [ "plot", "plot,diggit-method" ] }, { "page": "diggit-methods", "title": "Basic methods for class diggit", "topics": [ "diggitAqtl", "diggitAqtl,diggit-method", "diggitCNV", "diggitCNV,diggit-method", "diggitConditional", "diggitConditional,diggit-method", "diggitFcnv", "diggitFcnv,diggit-method", "diggitMindy", "diggitMindy,diggit-method", "diggitMR", "diggitMR,diggit-method", "diggitRegulon", "diggitRegulon,diggit-method", "diggitViper", "diggitViper,diggit-method", "exprs,diggit-method", "exprs.diggit", "head,diggit-method", "head.diggit", "mindyFiltering", "mindyFiltering,diggit-method", "print,diggit-method", "print.diggit", "show,diggit-method", "show.diggit", "summary,diggit-method", "summary.diggit" ] } ], "_rundeps": [ "askpass", "base64enc", "Biobase", "BiocGenerics", "bslib", "cachem", "class", "cli", "cpp11", "crosstalk", "curl", "data.table", "digest", "dplyr", "e1071", "evaluate", "farver", "fastmap", "FNN", "fontawesome", "fs", "generics", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "isoband", "jquerylib", "jsonlite", "kernlab", "KernSmooth", "knitr", "ks", "labeling", "later", "lattice", "lazyeval", "lifecycle", "magrittr", "MASS", "Matrix", "mclust", "memoise", "mgcv", "mime", "mixtools", "multicool", "mvtnorm", "nlme", "openssl", "otel", "pillar", "pkgconfig", "plotly", "pracma", "promises", "proxy", "purrr", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rlang", "rmarkdown", "S7", "sass", "scales", "segmented", "stringi", "stringr", "survival", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viper", "viridisLite", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "diggit.Rnw", "filename": "diggit.pdf", "title": "Using DIGGIT", "engine": "utils::Sweave", "headings": [ "Overview of DIGGIT", "Citation", "Installation of diggit package", "Example session to analyze the data provided by the diggitdata package", "Session information", "References" ], "created": "2015-03-13 17:25:56", "modified": "2021-09-06 14:47:40", "commits": 4 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "diggit", "_universes": [ "bioc", "reef103" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.45.0", "date": "2026-10-10T17:09:53.000Z", "distro": "resolute", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/0031b55d9d0c10c7a0919bede74831c61a0021c62901ddd9cc532b49bbaff7b6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" }, { "r": "4.6.1", "os": "linux", "version": "1.45.0", "date": "2026-10-10T17:10:06.000Z", "distro": "resolute", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/01e39faa2fb59d21b87c9b41ee3920281b77d4b50df3d8bbf462c1b90437c77a", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" }, { "r": "4.5.3", "os": "mac", "version": "1.45.0", "date": "2026-10-10T18:30:06.000Z", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/735826867537baa14e25cf23ef636d01a94bddb94fd0d7061e31427d1adabfd7", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" }, { "r": "4.6.1", "os": "mac", "version": "1.45.0", "date": "2026-10-10T18:30:23.000Z", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/7fa2dcd3a1f1a3ba39ee49c5c1db4996326f60dabfcc03cb3ac4a90635756cde", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" }, { "r": "4.6.0", "os": "wasm", "version": "1.45.0", "date": "2026-10-10T17:09:15.000Z", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/ed40f57e7f6d30875cb90983ff170454ba411440906b6d7f3df0632544b0cae1", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" }, { "r": "4.7.0", "os": "win", "version": "1.45.0", "date": "2026-10-10T17:08:19.000Z", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/7bc7bd64abdd816769852cd1e334af9cb6c4a527418314bdefec7cc3fe112179", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" }, { "r": "4.5.3", "os": "win", "version": "1.45.0", "date": "2026-10-10T17:08:07.000Z", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/9855241a233d8daa8e3a25848de51b76e0c9f964780127ef56378317919ce3f5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" }, { "r": "4.6.1", "os": "win", "version": "1.45.0", "date": "2026-10-10T17:08:27.000Z", "commit": "5b67144c6863e163cea5c2a42d90af28af5488ba", "fileid": "https://r2.ropensci.org/bf1fb2c8998a17068042a9f70ec0ab84f9bd608775818b0be5fcc657288f1d7f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38069925724" } ] }