Package: csawUsersGuide 1.29.0
Aaron Lun
csawUsersGuide: csaw User's Guide
A user's guide for the csaw package for detecting differentially bound regions in ChIP-seq data. Describes how to read in BAM files to obtain a per-window count matrix, filtering to obtain high-abundance windows of interest, normalization of sample-specific biases, testing for differential binding, consolidation of per-window results to obtain per-region statistics, and annotation and visualization of the DB results.
Authors:
csawUsersGuide_1.29.0.tar.gz
csawUsersGuide_1.29.0.zip(r-4.7-any)csawUsersGuide_1.29.0.zip(r-4.6-any)csawUsersGuide_1.29.0.zip(r-4.5-any)
csawUsersGuide_1.29.0.tgz(r-4.6-any)csawUsersGuide_1.29.0.tgz(r-4.5-any)
csawUsersGuide_1.29.0.tar.gz(r-4.7-any)csawUsersGuide_1.29.0.tar.gz(r-4.6-any)
csawUsersGuide_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
csawUsersGuide/json (API)
| # Install 'csawUsersGuide' in R: |
| install.packages('csawUsersGuide', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:csawUsersGuide-1.29.0(workflows 3.24)csawUsersGuide-1.28.0(workflows 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:1a71265c4b. Checks:1 WARNING, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 110 | ||
| linux-devel | OK | 177 | ||
| source / vignettes | OK | 188 | ||
| linux-release | OK | 178 | ||
| macos-release | OK | 97 | ||
| macos-oldrel | OK | 107 | ||
| windows-devel | OK | 57 | ||
| windows-release | OK | 67 | ||
| windows-oldrel | OK | 67 | ||
| wasm-release | OK | 73 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
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