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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "csawUsersGuide" in publications use:'
type: software
license: GPL-3.0-only
title: 'csawUsersGuide: csaw User''s Guide'
version: 1.29.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.csawUsersGuide
abstract: A user's guide for the csaw package for detecting differentially bound regions
  in ChIP-seq data. Describes how to read in BAM files to obtain a per-window count
  matrix, filtering to obtain high-abundance windows of interest, normalization of
  sample-specific biases, testing for differential binding, consolidation of per-window
  results to obtain per-region statistics, and annotation and visualization of the
  DB results.
authors:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com
preferred-citation:
  type: article
  title: 'csaw: a Bioconductor package for differential binding analysis of ChIP-seq
    data using sliding windows'
  authors:
  - family-names: Lun
    given-names: Aaron T L
  - family-names: Smyth
    given-names: Gordon K
  journal: Nucleic Acids Res.
  year: '2016'
  volume: '44'
  issue: '5'
  start: e45
repository: https://bioc.r-universe.dev
commit: 1a71265c4b06aad547b4c15c4608f975d422c033
date-released: '2020-11-25'
contact:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com