Package: OHCA 1.9.4

Jacques Serizay

OHCA: Orchestrating Hi-C analysis with Bioconductor

The primary aim of this book is to introduce the R user to Hi-C analysis. This book starts with key concepts important for the analysis of chromatin conformation capture and then presents Bioconductor tools that can be leveraged to process, analyze, explore and visualize Hi-C data.

Authors:Jacques Serizay [aut, cre]

OHCA_1.9.4.tar.gz
OHCA_1.9.4.tar.gz(r-4.7-any)OHCA_1.9.4.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OHCA/json (API)

# Install 'OHCA' in R:
install.packages('OHCA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/js2264/ohca/issues

On CRAN:

Conda:

hicdna3dstructurefunctionalgenomicsdatapkg

3.69 score 11 stars 2 scripts 0 exports 204 dependencies

Last updated from:22198dd014. Checks:1 NOTE, 2 WARNING, 1 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE299
linux-develWARNING472
source / vignettesERROR972
linux-releaseWARNING520

Exports:

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassbackportsbase64encbeeswarmBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocManagerBiocParallelBiocStyleBiocVersionbiomaRtBiostringsbiovizBasebitbit64bitopsblobbookdownBSgenomeBSgenome.Hsapiens.UCSC.hg38bslibcachemCairocheckmatecigarilloclicliprclustercodetoolscolorspacecowplotcpp11crayoncsawcurldata.tableDBIdbplyrDelayedArraydeldirdichromatdiffHicdigestdir.expiryDNAZooDatadoParalleldplyrdynamicTreeCutedgeRensembldbevaluateExperimentHubfarverfastclusterfastmapfilelockfontawesomeforeachforeignformatRFormulafourDNDatafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomicAlignmentsGenomicFeaturesGenomicInteractionsGenomicRangesggbeeswarmggplot2ggrastrglueGOTHiCgridExtragtableGvizHiCExperimentHiContactsHiContactsDatahighrHmischmshtmlTablehtmltoolshtmlwidgetshttrhttr2hwriterigraphimputeInteractionSetinterpIRangesisobanditeratorsjpegjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlatticelatticeExtralazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemetapodmimennetopensslpillarpkgconfigplyinteractionsplyrplyrangespngpreprocessCoreprettyunitsprogressProtGenericspurrrpwalignR6raggrappdirsRColorBrewerRcppRcppEigenRCurlreadrreshape2restfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrpartRsamtoolsRSpectraRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosessioninfoShortReadsnowSparseArraystatmodstrawrstringistringrSummarizedExperimentsurvivalsyssystemfontstextshapingtibbletidyrtidyselecttinytexTopDomtzdbUCSC.utilsutf8VariantAnnotationvctrsviporviridisLitevroomWGCNAwithrxfunXMLxml2XVectoryaml