{ "_id": "6ae4c65695ca2370cc8d0251", "Package": "OHCA", "Title": "Orchestrating Hi-C analysis with Bioconductor", "Version": "1.9.4", "Date": "2023-04-14", "Authors@R": "c(person(given = \"Jacques\",\nfamily = \"Serizay\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jacquesserizay@gmail.com\",\ncomment = c(ORCID = \"0000-0002-4295-0624\")))", "Description": "The primary aim of this book is to introduce the R user to\nHi-C analysis. This book starts with key concepts important for\nthe analysis of chromatin conformation capture and then\npresents Bioconductor tools that can be leveraged to process,\nanalyze, explore and visualize Hi-C data.", "License": "MIT + file LICENSE", "URL": "https://github.com/js2264/OHCA", "BugReports": "https://github.com/js2264/OHCA/issues", "biocViews": "HiC, DNA3DStructure, FunctionalGenomics", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "BiocType": "Book", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev libglpk-dev make\nlibharfbuzz-dev libbz2-dev libicu-dev libjpeg-dev liblzma-dev\nlibpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev\nlibssl-dev libx11-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-10-30 11:56:50 UTC", "RemoteUrl": "https://github.com/bioc/OHCA", "RemoteRef": "HEAD", "RemoteSha": "22198dd014340afe5385be8a1b28223f4524b8c6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-30 16:21:09 UTC", "User": "root" }, "Author": "Jacques Serizay [aut, cre] (ORCID:\n)", "Maintainer": "Jacques Serizay ", "_user": "bioc", "_type": "src", "_file": "OHCA_1.9.4.tar.gz", "_fileid": "https://r2.ropensci.org/107dbd2cacf8a43f721c4417c4d03db3d155f2c2f9d5b59a0c0c84a09df55722", "_filesize": 5489223, "_sha256": "107dbd2cacf8a43f721c4417c4d03db3d155f2c2f9d5b59a0c0c84a09df55722", "_expires": "2027-02-07T16:31:15.000Z", "_created": "2026-10-30T16:21:09.000Z", "_published": "2026-10-30T16:31:17.929Z", "_upstream": "https://github.com/bioc/OHCA", "_status": "failure", "_maintainer": { "name": "Jacques Serizay", "email": "jacquesserizay@gmail.com", "login": "js2264", "description": "Sequences & consequences", "uuid": 19528818, "orcid": "0000-0002-4295-0624" }, "_jobs": [ { "job": 124178441607, "time": 299, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "12993551704" }, { "job": 124178441741, "time": 472, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "12992789397" }, { "job": 124178441593, "time": 520, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12994650418" }, { "job": 124169853668, "time": 972, "config": "source", "r": "4.6.1", "check": "ERROR", "artifact": "12992763484" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 6 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41086725989", "_commit": { "id": "22198dd014340afe5385be8a1b28223f4524b8c6", "author": "js2264 ", "committer": "js2264 ", "message": "bump to 1.9.4\n", "time": 1793361410 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.4", "role": "Depends" }, { "package": "HiCExperiment", "role": "Imports" }, { "package": "HiContacts", "role": "Imports" }, { "package": "HiContactsData", "role": "Imports" }, { "package": "DNAZooData", "role": "Imports" }, { "package": "fourDNData", "role": "Imports" }, { "package": "plyinteractions", "role": "Imports" }, { "package": "GenomicInteractions", "role": "Imports" }, { "package": "WGCNA", "role": "Imports" }, { "package": "diffHic", "role": "Imports" }, { "package": "strawr", "role": "Imports" }, { "package": "TopDom", "role": "Imports" }, { "package": "GOTHiC", "role": "Imports" }, { "package": "BSgenome.Hsapiens.UCSC.hg38", "role": "Imports" }, { "package": "cowplot", "role": "Imports" }, { "package": "fs", "role": "Imports" }, { "package": "knitr", "role": "Imports" }, { "package": "BiocStyle", "role": "Imports" }, { "package": "sessioninfo", "role": "Imports" }, { "package": "BiocBook", "version": ">= 1.11.5", "role": "Suggests" }, { "package": "reticulate", "role": "Suggests" }, { "package": "multiHiCcompare", "role": "Suggests" }, { "package": "terra", "role": "Suggests" }, { "package": "ggbio", "role": "Suggests" }, { "package": "patchwork", "role": "Suggests" }, { "package": "HiCool", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-40", "n": 4 }, { "week": "2026-41", "n": 1 }, { "week": "2026-44", "n": 4 } ], "_tags": [], "_topics": [ "hic", "dna3dstructure", "functionalgenomics", "datapkg" ], "_stars": 11, "_contributors": [ { "user": "js2264", "count": 141, "uuid": 19528818 }, { "user": "lshep", "count": 8, "uuid": 18724380 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "claude", "count": 1, "uuid": 81847 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 480, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/js2264/ohca", "_searchresults": 2, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/OHCA.html", "extra/readme.html", "extra/readme.md", "LICENSE" ], "_cranurl": false, "_exports": [], "_help": [], "_readme": "https://github.com/bioc/OHCA/raw/HEAD/README.md", "_rundeps": [ "abind", "AnnotationDbi", "AnnotationFilter", "AnnotationHub", "askpass", "backports", "base64enc", "beeswarm", "BH", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocIO", "biocmake", "BiocManager", "BiocParallel", "BiocStyle", "BiocVersion", "biomaRt", "Biostrings", "biovizBase", "bit", "bit64", "bitops", "blob", "bookdown", "BSgenome", "BSgenome.Hsapiens.UCSC.hg38", "bslib", "cachem", "Cairo", "checkmate", "cigarillo", "cli", "clipr", "cluster", "codetools", "colorspace", "cowplot", "cpp11", "crayon", "csaw", "curl", "data.table", "DBI", "dbplyr", "DelayedArray", "deldir", "dichromat", "diffHic", "digest", "dir.expiry", "DNAZooData", "doParallel", "dplyr", "dynamicTreeCut", "edgeR", "ensembldb", "evaluate", "ExperimentHub", "farver", "fastcluster", "fastmap", "filelock", "fontawesome", "foreach", "foreign", "formatR", "Formula", "fourDNData", "fs", "futile.logger", "futile.options", "generics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicInteractions", "GenomicRanges", "ggbeeswarm", "ggplot2", "ggrastr", "glue", "GOTHiC", "gridExtra", "gtable", "Gviz", "HiCExperiment", "HiContacts", "HiContactsData", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "httr", "httr2", "hwriter", "igraph", "impute", "InteractionSet", "interp", "IRanges", "isoband", "iterators", "jpeg", "jquerylib", "jsonlite", "KEGGREST", "knitr", "labeling", "lambda.r", "lattice", "latticeExtra", "lazyeval", "lifecycle", "limma", "locfit", "magrittr", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "metapod", "mime", "nnet", "openssl", "pillar", "pkgconfig", "plyinteractions", "plyr", "plyranges", "png", "preprocessCore", "prettyunits", "progress", "ProtGenerics", "purrr", "pwalign", "R6", "ragg", "rappdirs", "RColorBrewer", "Rcpp", "RcppEigen", "RCurl", "readr", "reshape2", "restfulr", "rhdf5", "rhdf5filters", "Rhdf5lib", "Rhtslib", "rjson", "rlang", "rmarkdown", "rpart", "Rsamtools", "RSpectra", "RSQLite", "rstudioapi", "rtracklayer", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "sessioninfo", "ShortRead", "snow", "SparseArray", "statmod", "strawr", "stringi", "stringr", "SummarizedExperiment", "survival", "sys", "systemfonts", "textshaping", "tibble", "tidyr", "tidyselect", "tinytex", "TopDom", "tzdb", "UCSC.utils", "utf8", "VariantAnnotation", "vctrs", "vipor", "viridisLite", "vroom", "WGCNA", "withr", "xfun", "XML", "xml2", "XVector", "yaml" ], "_score": 3.694605198933569, "_indexed": true, "_nocasepkg": "ohca", "_universes": [ "bioc", "js2264" ], "_previous": "1.9.2", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.9.4", "date": "2026-10-30T16:27:40.000Z", "distro": "resolute", "commit": "22198dd014340afe5385be8a1b28223f4524b8c6", "fileid": "https://r2.ropensci.org/0059d4b78cdca7d6ef3bbc3de43d9f1ff96d138fc498970cbe91c614a229a3ec", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41086725989" }, { "r": "4.6.1", "os": "linux", "version": "1.9.4", "date": "2026-10-30T16:28:41.000Z", "distro": "resolute", "commit": "22198dd014340afe5385be8a1b28223f4524b8c6", "fileid": "https://r2.ropensci.org/85c967947049336dca586e9efa76f6c5f3bb34c5114bd9954783e26db6c9e017", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41086725989" } ] }