{ "_id": "6aca21abfe5cc25786e85062", "Package": "OHCA", "Title": "Orchestrating Hi-C analysis with Bioconductor", "Version": "1.9.2", "Date": "2023-04-14", "Authors@R": "c(person(given = \"Jacques\",\nfamily = \"Serizay\",\nrole = c(\"aut\", \"cre\"),\nemail = \"jacquesserizay@gmail.com\",\ncomment = c(ORCID = \"0000-0002-4295-0624\")))", "Description": "The primary aim of this book is to introduce the R user to\nHi-C analysis. This book starts with key concepts important for\nthe analysis of chromatin conformation capture and then\npresents Bioconductor tools that can be leveraged to process,\nanalyze, explore and visualize Hi-C data.", "License": "MIT + file LICENSE", "URL": "https://github.com/js2264/OHCA", "BugReports": "https://github.com/js2264/OHCA/issues", "biocViews": "HiC, DNA3DStructure, FunctionalGenomics", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "BiocType": "Book", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev libglpk-dev make\nlibharfbuzz-dev libbz2-dev libicu-dev libjpeg-dev liblzma-dev\nlibpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev\nlibssl-dev libx11-dev xz-utils zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-10-06 09:42:10 UTC", "RemoteUrl": "https://github.com/bioc/OHCA", "RemoteRef": "HEAD", "RemoteSha": "8ef6242d336e8c8875f4afb2164b47c4d0fbcea4", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:21:28 UTC", "User": "root" }, "Author": "Jacques Serizay [aut, cre] (ORCID:\n)", "Maintainer": "Jacques Serizay ", "_user": "bioc", "_type": "src", "_file": "OHCA_1.9.2.tar.gz", "_fileid": "https://r2.ropensci.org/d4b39a6d72a93758e7e4e492485fbe160f6ddec02fa3931226ed80389d50f843", "_filesize": 25197750, "_sha256": "d4b39a6d72a93758e7e4e492485fbe160f6ddec02fa3931226ed80389d50f843", "_expires": "2027-01-18T11:29:44.000Z", "_created": "2026-10-10T11:21:28.000Z", "_published": "2026-10-10T11:29:47.298Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38046267929", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 1, "warning": 0, "note": 6 }, "_upstream": "https://github.com/bioc/OHCA", "_commit": { "id": "8ef6242d336e8c8875f4afb2164b47c4d0fbcea4", "author": "Jacques Serizay ", "committer": "GitHub ", "message": "fix: python chapter imports cooler on the Bioconductor builders (#8)\n\n* fix: python chapter imports cooler on the Bioconductor builders\n\nThe Bioconductor build stopped at `import cooler` in\ninteroperability-python.qmd:\n libssl.so.3: version `OPENSSL_3.2.0' not found (required by\n .../envs/OHCA/lib/python3.12/site-packages/h5py/../../.././libcurl.so.4)\nh5py's HDF5 needs libcurl, and the python environment's libcurl needs\nOpenSSL >= 3.2; R had already loaded the system's OpenSSL (3.0 on Ubuntu\n24.04) through the openssl package, and the environment's libcurl was\nbound to it. A hidden first chunk now loads R's curl package, so the\nsystem's libcurl is already in the process and HDF5 uses it. Reproduced\nand checked on Ubuntu 24.04 with this book's environment (cooler 0.10.4,\nh5py 3.16.0, libcurl 8.22.0, openssl 3.6.5). Pinning openssl to 3.0 in\nrequirements.yml cannot be solved.\n\ncurl joins Imports. 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