Package: OHCA
Title: Orchestrating Hi-C analysis with Bioconductor
Version: 1.9.2
Date: 2023-04-14
Authors@R: 
    c(person(given = "Jacques",
           family = "Serizay",
           role = c("aut", "cre"),
           email = "jacquesserizay@gmail.com",
           comment = c(ORCID = "0000-0002-4295-0624")))
Description: The primary aim of this book is to introduce the R user to
        Hi-C analysis. This book starts with key concepts important for
        the analysis of chromatin conformation capture and then
        presents Bioconductor tools that can be leveraged to process,
        analyze, explore and visualize Hi-C data.
License: MIT + file LICENSE
URL: https://github.com/js2264/OHCA
BugReports: https://github.com/js2264/OHCA/issues
Depends: R (>= 4.4),
Imports: HiCExperiment, HiContacts, HiContactsData, DNAZooData,
        fourDNData, plyinteractions, GenomicInteractions, WGCNA,
        diffHic, strawr, TopDom, GOTHiC, BSgenome.Hsapiens.UCSC.hg38,
        cowplot, curl, fs, knitr, BiocStyle, sessioninfo
Suggests: BiocBook (>= 1.11.2), reticulate, multiHiCcompare, terra,
        ggbio, patchwork, HiCool
biocViews: HiC, DNA3DStructure, FunctionalGenomics
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
BiocType: Book
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libglpk-dev make
        libharfbuzz-dev libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-06 09:42:10 UTC
RemoteUrl: https://github.com/bioc/OHCA
RemoteRef: HEAD
RemoteSha: 8ef6242d336e8c8875f4afb2164b47c4d0fbcea4
NeedsCompilation: no
Packaged: 2026-10-10 11:21:28 UTC; root
Author: Jacques Serizay [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4295-0624>)
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>