Package: HiCParser 1.5.0

Maigné Élise

HiCParser: Parser for HiC data in R

This package is a parser to import HiC data into R. It accepts several type of data: tabular files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files. The HiC data can be several files, for several replicates and conditions. The data is formated in an InteractionSet object.

Authors:Zytnicki Matthias [aut], Maigné Élise [aut, cre]

HiCParser_1.5.0.tar.gz
HiCParser_1.5.0.zip(r-4.7)HiCParser_1.5.0.zip(r-4.6)HiCParser_1.5.0.zip(r-4.5)
HiCParser_1.5.0.tgz(r-4.6-x86_64)HiCParser_1.5.0.tgz(r-4.6-arm64)HiCParser_1.5.0.tgz(r-4.5-x86_64)HiCParser_1.5.0.tgz(r-4.5-arm64)
HiCParser_1.5.0.tar.gz(r-4.7-arm64)HiCParser_1.5.0.tar.gz(r-4.7-x86_64)HiCParser_1.5.0.tar.gz(r-4.6-arm64)HiCParser_1.5.0.tar.gz(r-4.6-x86_64)
HiCParser_1.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
HiCParser/json (API)
NEWS

# Install 'HiCParser' in R:
install.packages('HiCParser', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/emaigne/hicparser/issues

Uses libs:
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On BioConductor:HiCParser-1.5.0(bioc 3.24)HiCParser-1.4.0(bioc 3.23)

softwarehicdataimportzlibcpp

4.65 score 1 stars 1 packages 1 scripts 232 downloads 5 exports 22 dependencies

Last updated from:7a6b4ef893. Checks:12 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE180
linux-devel-arm64NOTE226
linux-devel-x86_64NOTE300
source / vignettesOK281
linux-release-arm64NOTE217
linux-release-x86_64NOTE314
macos-release-arm64NOTE216
macos-release-x86_64NOTE445
macos-oldrel-arm64NOTE205
macos-oldrel-x86_64NOTE290
windows-develNOTE226
windows-releaseNOTE222
windows-oldrelNOTE215
wasm-releaseOK121

Exports:mergeInteractionSetparseCoolparseHiCparseHiCProparseTabular

Dependencies:abindBiobaseBiocGenericsdata.tableDelayedArraygenericsGenomicRangesgtoolsInteractionSetIRangeslatticeMatrixMatrixGenericsmatrixStatspbapplyRcppS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimentXVector

Introduction to HiCParser

Elise Maigné, Matthias Zytnicki

Rendered fromHiCParser.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-11-06
Started: 2024-07-10