Package: HiCParser
Type: Package
Title: Parser for HiC data in R
Date: 2025-07-22
Version: 1.5.1
URL: https://github.com/emaigne/HiCParser
BugReports: https://github.com/emaigne/HiCParser/issues
Authors@R: c(
    person("Zytnicki", "Matthias", email = "matthias.zytnicki@inrae.fr", 
      role = c("aut")),
    person("Maigné", "Élise", email = "elise.maigne@inrae.fr", 
      role = c("aut", "cre")))
Description: This package is a parser to import HiC data into R. It
        accepts several type of data: tabular files, Cooler `.cool` or
        `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and
        `.bed` files. The HiC data can be several files, for several
        replicates and conditions. The data is formated in an
        InteractionSet object.
License: LGPL
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
biocViews: Software, HiC, DataImport
Imports: data.table, InteractionSet, GenomicRanges,
        SummarizedExperiment, Rcpp (>= 1.0.12), S4Vectors, gtools,
        pbapply, BiocGenerics, Seqinfo
LinkingTo: Rcpp
Suggests: rhdf5, BiocStyle, knitr, sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-07 07:42:53 UTC
RemoteUrl: https://github.com/bioc/HiCParser
RemoteRef: HEAD
RemoteSha: 84b40db8cc1bb5ee344492b3505b8bb84cb3ec0e
NeedsCompilation: yes
Packaged: 2026-07-07 11:50:51 UTC; root
Author: Zytnicki Matthias [aut],
  Maigné Élise [aut, cre]
Maintainer: Maigné Élise <elise.maigne@inrae.fr>