Package: GRmetrics 1.31.0

Nicholas Clark

GRmetrics: Calculate growth-rate inhibition (GR) metrics

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Authors:Nicholas Clark

GRmetrics_1.31.0.tar.gz
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GRmetrics.pdf |GRmetrics.html✨
GRmetrics/json (API)
NEWS

# Install 'GRmetrics' in R:

install.packages('GRmetrics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/uc-bd2k/grmetrics/issues

Datasets:

inputCaseA - Simulated dose-response assay data
inputCaseC - Simulated dose-response assay data

On BioConductor:GRmetrics-1.31.0(bioc 3.20)GRmetrics-1.30.0(bioc 3.19)

bioconductor-package

8 exports 0.91 score 113 dependencies 4 mentions

Last updated 2 months agofrom:7ac30d8825

Exports:GRbox GRdrawDRC GRfit GRgetDefs GRgetGroupVars GRgetMetrics GRgetValues GRscatter

Dependencies:abind askpass backports base64enc Biobase BiocGenerics boot broom bslib cachem car carData cli codetools colorspace cpp11 crayon crosstalk curl data.table DelayedArray digest dplyr drc evaluate fansi farver fastmap fontawesome fs generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 glue gtable gtools highr htmltools htmlwidgets httr IRanges isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle lme4 magrittr MASS Matrix MatrixGenerics MatrixModels matrixStats memoise mgcv mime minqa multcomp munsell mvtnorm nlme nloptr nnet numDeriv openssl pbkrtest pillar pkgconfig plotly plotrix promises purrr quantreg R6 rappdirs RColorBrewer Rcpp RcppEigen rlang rmarkdown S4Arrays S4Vectors sandwich sass scales SparseArray SparseM stringi stringr SummarizedExperiment survival sys TH.data tibble tidyr tidyselect tinytex UCSC.utils utf8 vctrs viridisLite withr xfun XVector yaml zlibbioc zoo

GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition

Nicholas Clark

Rendered fromGRmetrics-vignette.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2018-08-30
Started: 2016-08-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Boxplots of a given GR metric	GRbox
Dose-Response Curves	GRdrawDRC
Extract GR parameters from a dataset	GRfit
GR metrics definitions	GRgetDefs
Grouping Variables	GRgetGroupVars
GR metrics	GRgetMetrics
GR values	GRgetValues
Scatterplot of a given GR metric	GRscatter
Simulated dose-response assay data (Case A)	inputCaseA
Simulated dose-response assay data (Case C)	inputCaseC

Usage by other packages (reverse dependencies)