Package: GRmetrics 1.39.0
GRmetrics: Calculate growth-rate inhibition (GR) metrics
Functions for calculating and visualizing growth-rate inhibition (GR) metrics.
Authors:
GRmetrics_1.39.0.tar.gz
GRmetrics_1.39.0.zip(r-4.7)GRmetrics_1.39.0.zip(r-4.6)GRmetrics_1.39.0.zip(r-4.5)
GRmetrics_1.39.0.tgz(r-4.6-any)GRmetrics_1.39.0.tgz(r-4.5-any)
GRmetrics_1.39.0.tar.gz(r-4.7-any)GRmetrics_1.39.0.tar.gz(r-4.6-any)
GRmetrics_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GRmetrics/json (API)
NEWS
| # Install 'GRmetrics' in R: |
| install.packages('GRmetrics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/uc-bd2k/grmetrics/issues
- inputCaseA - Simulated dose-response assay data
- inputCaseC - Simulated dose-response assay data
On BioConductor:GRmetrics-1.39.0(bioc 3.24)GRmetrics-1.38.0(bioc 3.23)
immunooncologycellbasedassayscellbiologysoftwaretimecoursevisualization
Last updated from:bd1f857ff5. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 185 | ||
| linux-devel-x86_64 | NOTE | 242 | ||
| source / vignettes | OK | 251 | ||
| linux-release-x86_64 | NOTE | 225 | ||
| macos-release-arm64 | NOTE | 168 | ||
| macos-oldrel-arm64 | NOTE | 146 | ||
| windows-devel | NOTE | 190 | ||
| windows-release | NOTE | 164 | ||
| windows-oldrel | NOTE | 154 | ||
| wasm-release | OK | 144 |
Exports:GRboxGRdrawDRCGRfitGRgetDefsGRgetGroupVarsGRgetMetricsGRgetValuesGRscatter
Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericsbootbroombslibcachemcarcarDataclicodetoolscolorspacecowplotcpp11crosstalkcurldata.tableDelayedArrayDerivdigestdoBydplyrdrcevaluatefarverfastmapfontawesomeforecastFormulafracdifffsgenericsGenomicRangesggplot2gluegtablegtoolshighrhtmltoolshtmlwidgetshttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelme4lmtestmagrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompmvtnormnlmenloptrnnetnumDerivopensslotelpbkrtestpillarpkgconfigplotlyplotrixpromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownS4ArraysS4VectorsS7sandwichsassscalesSeqinfoSparseArraySparseMstringistringrSummarizedExperimentsurvivalsysTH.datatibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisLitewithrxfunXVectoryamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Boxplots of a given GR metric | GRbox |
| Dose-Response Curves | GRdrawDRC |
| Extract GR parameters from a dataset | GRfit |
| GR metrics definitions | GRgetDefs |
| Grouping Variables | GRgetGroupVars |
| GR metrics | GRgetMetrics |
| GR values | GRgetValues |
| Scatterplot of a given GR metric | GRscatter |
| Simulated dose-response assay data (Case A) | inputCaseA |
| Simulated dose-response assay data (Case C) | inputCaseC |
