Package: GRmetrics 1.39.0

Nicholas Clark

GRmetrics: Calculate growth-rate inhibition (GR) metrics

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Authors:Nicholas Clark

GRmetrics_1.39.0.tar.gz
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GRmetrics_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GRmetrics/json (API)

# Install 'GRmetrics' in R:

install.packages('GRmetrics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/uc-bd2k/grmetrics/issues

Datasets:

inputCaseA - Simulated dose-response assay data
inputCaseC - Simulated dose-response assay data

On BioConductor:GRmetrics-1.39.0(bioc 3.24)GRmetrics-1.38.0(bioc 3.23)

immunooncology cellbasedassays cellbiology software timecourse visualization

4.90 score 1 stars 20 scripts 4 mentions 8 exports 123 dependencies

Last updated from:bd1f857ff5. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
bioc-checks	ERROR	195
linux-devel-x86_64	NOTE	282
source / vignettes	OK	236
linux-release-x86_64	NOTE	307
macos-release-arm64	NOTE	195
macos-oldrel-arm64	NOTE	132
windows-devel	NOTE	169
windows-release	NOTE	160
windows-oldrel	NOTE	180
wasm-release	OK	175

Exports:GRbox GRdrawDRC GRfit GRgetDefs GRgetGroupVars GRgetMetrics GRgetValues GRscatter

Dependencies:abind askpass backports base64enc Biobase BiocGenerics boot broom bslib cachem car carData cli codetools colorspace cowplot cpp11 crosstalk curl data.table DelayedArray Deriv digest doBy dplyr drc evaluate farver fastmap fontawesome forecast Formula fracdiff fs generics GenomicRanges ggplot2 glue gtable gtools highr htmltools htmlwidgets httr IRanges isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle lme4 lmtest magrittr MASS Matrix MatrixGenerics MatrixModels matrixStats memoise mgcv mime minqa modelr multcomp mvtnorm nlme nloptr nnet numDeriv openssl otel pbkrtest pillar pkgconfig plotly plotrix promises purrr quantreg R6 rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack reformulas rlang rmarkdown S4Arrays S4Vectors S7 sandwich sass scales Seqinfo SparseArray SparseM stringi stringr SummarizedExperiment survival sys TH.data tibble tidyr tidyselect timeDate tinytex urca utf8 vctrs viridisLite withr xfun XVector yaml zoo

GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition

Background | Installation | Examples

Rendered fromGRmetrics-vignette.Rmdusingknitr::rmarkdown

Last update: 2018-08-30
Started: 2016-08-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Boxplots of a given GR metric	GRbox
Dose-Response Curves	GRdrawDRC
Extract GR parameters from a dataset	GRfit
GR metrics definitions	GRgetDefs
Grouping Variables	GRgetGroupVars
GR metrics	GRgetMetrics
GR values	GRgetValues
Scatterplot of a given GR metric	GRscatter
Simulated dose-response assay data (Case A)	inputCaseA
Simulated dose-response assay data (Case C)	inputCaseC

Usage by other packages (reverse dependencies)