{ "_id": "6a1accca1d7bb097a09debcf", "Package": "GRmetrics", "Type": "Package", "Title": "Calculate growth-rate inhibition (GR) metrics", "Version": "1.39.0", "Date": "2020-04-10", "Author": "Nicholas Clark", "Maintainer": "Nicholas Clark , Mario\nMedvedovic ", "biocViews": "ImmunoOncology, CellBasedAssays, CellBiology, Software,\nTimeCourse, Visualization", "Description": "Functions for calculating and visualizing growth-rate\ninhibition (GR) metrics.", "License": "GPL-3", "URL": "https://github.com/uc-bd2k/GRmetrics", "BugReports": "https://github.com/uc-bd2k/GRmetrics/issues", "LazyData": "TRUE", "RoxygenNote": "7.1.0", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nzlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:44:02 UTC", "RemoteUrl": "https://github.com/bioc/GRmetrics", "RemoteRef": "HEAD", "RemoteSha": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:07:02 UTC", "User": "root" }, "MD5sum": "20258d6ec7382ffbc620fbaa5ed5f754", "_user": "bioc", "_type": "src", "_file": "GRmetrics_1.39.0.tar.gz", "_fileid": "a6fb66044ad4c71288b0b2eeb40cd3a981d254022c7f37f60391e6992673d3d3", "_filesize": 812887, "_sha256": "a6fb66044ad4c71288b0b2eeb40cd3a981d254022c7f37f60391e6992673d3d3", "_created": "2026-05-30T08:07:02.000Z", "_published": "2026-05-30T11:40:58.085Z", "_jobs": [ { "job": 78635527279, "time": 185, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306724660" }, { "job": 78635527273, "time": 242, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306730479" }, { "job": 78635527265, "time": 225, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306728688" }, { "job": 78635527269, "time": 146, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307910249" }, { "job": 78635527271, "time": 168, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307913369" }, { "job": 78635306698, "time": 251, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306705450" }, { "job": 78635527255, "time": 144, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306720276" }, { "job": 78635527272, "time": 190, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306725154" }, { "job": 78635527285, "time": 154, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306721517" }, { "job": 78635527286, "time": 164, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306722345" } ], "_bioccheck": { "error": 1, "warning": 1, "note": 13 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/GRmetrics", "_commit": { "id": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380242 }, "_maintainer": { "name": "Nicholas Clark", "email": "medvedm@ucmail.uc.edu", "login": "nicholasclark", "description": "Senior Staff Scientist @ Fred Hutch Cancer Center", "uuid": 7820491 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "SummarizedExperiment", "role": "Depends" }, { "package": "drc", "role": "Imports" }, { "package": "plotly", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "tinytex", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.39.0", "bioc": "3.24" }, { "branch": "release", "version": "1.38.0", "bioc": "3.23" } ], "_topics": [ "immunooncology", "cellbasedassays", "cellbiology", "software", "timecourse", "visualization" ], "_stars": 1, "_contributors": [ { "user": "nicholasclark", "count": 30, "uuid": 7820491 }, { "user": "nturaga", "count": 8, "uuid": 2746443 }, { "user": "hpages", "count": 2, "uuid": 8810451 }, { "user": "vobencha", "count": 2, "uuid": 2466173 }, { "user": "kayla-morrell", "count": 1, "uuid": 32339524 }, { "user": "link-ny", "count": 1, "uuid": 4392950 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 430, "source": "https://www.bioconductor.org/packages/stats/bioc/GRmetrics" }, "_mentions": 4, "_devurl": "https://github.com/uc-bd2k/grmetrics", "_searchresults": 24, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GRmetrics.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/uc-bd2k/grmetrics", "_realowner": "bioc", "_cranurl": false, "_exports": [ "GRbox", "GRdrawDRC", "GRfit", "GRgetDefs", "GRgetGroupVars", "GRgetMetrics", "GRgetValues", "GRscatter" ], "_datasets": [ { "name": "inputCaseA", "title": "Simulated dose-response assay data (Case A)", "object": "inputCaseA", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "cell_line", "agent", "perturbation", "replicate", "time", "concentration", "cell_count", "cell_count__ctrl", "cell_count__time0" ], "rows": 1008, "table": true, "tojson": true }, { "name": "inputCaseC", "title": "Simulated dose-response assay data (Case C)", "object": "inputCaseC", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "cell_line", "agent", "perturbation", "replicate", "time", "concentration", "cell_count" ], "rows": 1352, "table": true, "tojson": true } ], "_help": [ { "page": "GRbox", "title": "Boxplots of a given GR metric", "topics": [ "GRbox" ] }, { "page": "GRdrawDRC", "title": "Dose-Response Curves", "topics": [ "GRdrawDRC" ] }, { "page": "GRfit", "title": "Extract GR parameters from a dataset", "topics": [ "GRfit" ] }, { "page": "GRgetDefs", "title": "GR metrics definitions", "topics": [ "GRgetDefs" ] }, { "page": "GRgetGroupVars", "title": "Grouping Variables", "topics": [ "GRgetGroupVars" ] }, { "page": "GRgetMetrics", "title": "GR metrics", "topics": [ "GRgetMetrics" ] }, { "page": "GRgetValues", "title": "GR values", "topics": [ "GRgetValues" ] }, { "page": "GRscatter", "title": "Scatterplot of a given GR metric", "topics": [ "GRscatter" ] }, { "page": "inputCaseA", "title": "Simulated dose-response assay data (Case A)", "topics": [ "inputCaseA" ] }, { "page": "inputCaseC", "title": "Simulated dose-response assay data (Case C)", "topics": [ "inputCaseC" ] } ], "_rundeps": [ "abind", "askpass", "backports", "base64enc", "Biobase", "BiocGenerics", "boot", "broom", "bslib", "cachem", "car", "carData", "cli", "codetools", "colorspace", "cowplot", "cpp11", "crosstalk", "curl", "data.table", "DelayedArray", "Deriv", "digest", "doBy", "dplyr", "drc", "evaluate", "farver", "fastmap", "fontawesome", "forecast", "Formula", "fracdiff", "fs", "generics", "GenomicRanges", "ggplot2", "glue", "gtable", "gtools", "highr", "htmltools", "htmlwidgets", "httr", "IRanges", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "later", "lattice", "lazyeval", "lifecycle", "lme4", "lmtest", "magrittr", "MASS", "Matrix", "MatrixGenerics", "MatrixModels", "matrixStats", "memoise", "mgcv", "microbenchmark", "mime", "minqa", "modelr", "multcomp", "mvtnorm", "nlme", "nloptr", "nnet", "numDeriv", "openssl", "otel", "pbkrtest", "pillar", "pkgconfig", "plotly", "plotrix", "promises", "purrr", "quantreg", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "Rdpack", "reformulas", "rlang", "rmarkdown", "S4Arrays", "S4Vectors", "S7", "sandwich", "sass", "scales", "Seqinfo", "SparseArray", "SparseM", "stringi", "stringr", "SummarizedExperiment", "survival", "sys", "TH.data", "tibble", "tidyr", "tidyselect", "timeDate", "tinytex", "urca", "utf8", "vctrs", "viridisLite", "withr", "xfun", "XVector", "yaml", "zoo" ], "_vignettes": [ { "source": "GRmetrics-vignette.Rmd", "filename": "GRmetrics-vignette.html", "title": "GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition", "author": "Nicholas Clark", "engine": "knitr::rmarkdown", "headings": [ "Background", "Installation", "Examples" ], "created": "2016-08-10 22:19:07", "modified": "2018-08-30 17:49:59", "commits": 9 } ], "_score": 4.982271233039569, "_indexed": true, "_nocasepkg": "grmetrics", "_universes": [ "bioc", "nicholasclark", "uc-bd2k" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.39.0", "date": "2026-05-30T08:10:01.000Z", "distro": "noble", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "6780958a4341976caf011e8068e96cfff55ecaf8d5ffb2d9f824c9c770dfb6c4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" }, { "r": "4.6.0", "os": "linux", "version": "1.39.0", "date": "2026-05-30T08:09:51.000Z", "distro": "noble", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "5f03bc5522b87bf6f776e51c59ad1737ce4b07b6391f735510b41951659b6353", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" }, { "r": "4.5.3", "os": "mac", "version": "1.39.0", "date": "2026-05-30T11:39:05.000Z", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "1dc7c5f11d1a058ca6468d08b8125faf956259c1eb8cf6977f10874420c2e0f1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" }, { "r": "4.6.0", "os": "mac", "version": "1.39.0", "date": "2026-05-30T11:39:27.000Z", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "c39f9b340de9a468b432d231f50bd63f25bbcfbe9b21e452c7acbb79dccfb1ec", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" }, { "r": "4.6.0", "os": "wasm", "version": "1.39.0", "date": "2026-05-30T08:09:54.000Z", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "3825f1bce1e39eeb64950a5e3652e5ba8f840bc35065f6ff8f21b2f9a4f3f5a7", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" }, { "r": "4.7.0", "os": "win", "version": "1.39.0", "date": "2026-05-30T08:09:03.000Z", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "f8c1dc84fba7b0360bd7cdee177a3f7902e33c1fa8812eb2ecaa6171d1413592", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" }, { "r": "4.5.3", "os": "win", "version": "1.39.0", "date": "2026-05-30T08:08:29.000Z", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "2db8b8610c32efbea3d669401256e8ff06131ace8ba75bf399d11e3fa3ec9e7c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" }, { "r": "4.6.0", "os": "win", "version": "1.39.0", "date": "2026-05-30T08:08:42.000Z", "commit": "bd1f857ff5c2fd28777b9c921f9421bbe8d0670e", "fileid": "14a324f6c823e577d7a9383f9228018e8a92de2c1709eb39206779ef2b04cf6c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678752632" } ] }