Package: GENIE3 1.29.0
Van Anh Huynh-Thu
GENIE3: GEne Network Inference with Ensemble of trees
This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.
Authors:
GENIE3_1.29.0.tar.gz
GENIE3_1.29.0.zip(r-4.5)GENIE3_1.29.0.zip(r-4.4)GENIE3_1.29.0.zip(r-4.3)
GENIE3_1.29.0.tgz(r-4.4-x86_64)GENIE3_1.29.0.tgz(r-4.4-arm64)GENIE3_1.29.0.tgz(r-4.3-x86_64)GENIE3_1.29.0.tgz(r-4.3-arm64)
GENIE3_1.29.0.tar.gz(r-4.5-noble)GENIE3_1.29.0.tar.gz(r-4.4-noble)
GENIE3_1.29.0.tgz(r-4.4-emscripten)GENIE3_1.29.0.tgz(r-4.3-emscripten)
GENIE3.pdf |GENIE3.html✨
GENIE3/json (API)
NEWS
| # Install 'GENIE3' in R: |
| install.packages('GENIE3', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:GENIE3-1.29.0(bioc 3.21)GENIE3-1.28.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
networkinferencesystemsbiologydecisiontreeregressionnetworkgraphandnetworkgeneexpression
Last updated 2 months agofrom:709fdc0ce5. Checks:OK: 4 NOTE: 5. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 10 2024 |
| R-4.5-win-x86_64 | NOTE | Dec 10 2024 |
| R-4.5-linux-x86_64 | NOTE | Dec 10 2024 |
| R-4.4-win-x86_64 | NOTE | Dec 10 2024 |
| R-4.4-mac-x86_64 | NOTE | Dec 10 2024 |
| R-4.4-mac-aarch64 | NOTE | Dec 10 2024 |
| R-4.3-win-x86_64 | OK | Dec 10 2024 |
| R-4.3-mac-x86_64 | OK | Dec 10 2024 |
| R-4.3-mac-aarch64 | OK | Dec 10 2024 |
Exports:GENIE3getLinkList
Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigplyrR6Rcppreshape2rlangstringistringrtibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GENIE3 | GENIE3 GENIE3,ExpressionSet-method GENIE3,matrix-method GENIE3,SummarizedExperiment-method |
| getLinkList | getLinkList |
