Package: GENIE3 1.29.0

Van Anh Huynh-Thu

GENIE3: GEne Network Inference with Ensemble of trees

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Authors:Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

GENIE3_1.29.0.tar.gz
GENIE3_1.29.0.zip(r-4.5)GENIE3_1.29.0.zip(r-4.4)GENIE3_1.29.0.zip(r-4.3)
GENIE3_1.29.0.tgz(r-4.5-x86_64)GENIE3_1.29.0.tgz(r-4.5-arm64)GENIE3_1.29.0.tgz(r-4.4-x86_64)GENIE3_1.29.0.tgz(r-4.4-arm64)GENIE3_1.29.0.tgz(r-4.3-x86_64)GENIE3_1.29.0.tgz(r-4.3-arm64)
GENIE3_1.29.0.tar.gz(r-4.5-noble)GENIE3_1.29.0.tar.gz(r-4.4-noble)
GENIE3_1.29.0.tgz(r-4.4-emscripten)GENIE3_1.29.0.tgz(r-4.3-emscripten)
GENIE3.pdf |GENIE3.html✨
GENIE3/json (API)
NEWS

# Install 'GENIE3' in R:
install.packages('GENIE3', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:GENIE3-1.29.0(bioc 3.21)GENIE3-1.28.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

networkinferencesystemsbiologydecisiontreeregressionnetworkgraphandnetworkgeneexpression

7.62 score 4 packages 180 scripts 1.9k downloads 172 mentions 2 exports 21 dependencies

Last updated 4 months agofrom:709fdc0ce5. Checks:4 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 10 2025
R-4.5-win-x86_64NOTEMar 10 2025
R-4.5-mac-x86_64NOTEMar 10 2025
R-4.5-mac-aarch64NOTEMar 10 2025
R-4.5-linux-x86_64NOTEMar 10 2025
R-4.4-win-x86_64NOTEMar 10 2025
R-4.4-mac-x86_64NOTEMar 10 2025
R-4.4-mac-aarch64NOTEMar 10 2025
R-4.4-linux-x86_64NOTEMar 10 2025
R-4.3-win-x86_64OKFeb 08 2025
R-4.3-mac-x86_64OKMar 10 2025
R-4.3-mac-aarch64OKMar 10 2025

Exports:GENIE3getLinkList

Dependencies:clidplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigplyrR6Rcppreshape2rlangstringistringrtibbletidyselectutf8vctrswithr

GENIE3 vignette

Van Anh Huynh-Thu ([email protected])

Rendered fromGENIE3.Rmdusingknitr::rmarkdownon Mar 10 2025.

Last update: 2023-08-16
Started: 2016-11-04

Readme and manuals

Help Manual

Help pageTopics
GENIE3GENIE3 GENIE3,ExpressionSet-method GENIE3,matrix-method GENIE3,SummarizedExperiment-method
getLinkListgetLinkList