Package: GENIE3 1.35.0

Van Anh Huynh-Thu

GENIE3: GEne Network Inference with Ensemble of trees

This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.

Authors:Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts

GENIE3_1.35.0.tar.gz
GENIE3_1.35.0.zip(r-4.7)GENIE3_1.35.0.zip(r-4.6)GENIE3_1.35.0.zip(r-4.5)
GENIE3_1.35.0.tgz(r-4.6-x86_64)GENIE3_1.35.0.tgz(r-4.6-arm64)GENIE3_1.35.0.tgz(r-4.5-x86_64)GENIE3_1.35.0.tgz(r-4.5-arm64)
GENIE3_1.35.0.tar.gz(r-4.7-arm64)GENIE3_1.35.0.tar.gz(r-4.7-x86_64)GENIE3_1.35.0.tar.gz(r-4.6-arm64)GENIE3_1.35.0.tar.gz(r-4.6-x86_64)
GENIE3_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GENIE3/json (API)
NEWS

# Install 'GENIE3' in R:
install.packages('GENIE3', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:GENIE3-1.35.0(bioc 3.24)GENIE3-1.34.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

networkinferencesystemsbiologydecisiontreeregressionnetworkgraphandnetworkgeneexpression

7.84 score 4 packages 235 scripts 2.5k downloads 172 mentions 2 exports 20 dependencies

Last updated from:0146353a24. Checks:2 ERROR, 10 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR152
linux-devel-arm64NOTE142
linux-devel-x86_64NOTE161
source / vignettesOK209
linux-release-arm64NOTE155
linux-release-x86_64NOTE191
macos-release-arm64NOTE106
macos-release-x86_64NOTE182
macos-oldrel-arm64NOTE129
macos-oldrel-x86_64NOTE170
windows-develNOTE94
windows-releaseERROR135
windows-oldrelNOTE101
wasm-releaseOK119

Exports:GENIE3getLinkList

Dependencies:clidplyrgenericsgluelifecyclemagrittrpillarpkgconfigplyrR6Rcppreshape2rlangstringistringrtibbletidyselectutf8vctrswithr

GENIE3 vignette

Van Anh Huynh-Thu ([email protected])

Rendered fromGENIE3.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-08-16
Started: 2016-11-04

Readme and manuals

Help Manual

Help pageTopics
GENIE3GENIE3 GENIE3,ExpressionSet-method GENIE3,matrix-method GENIE3,SummarizedExperiment-method
getLinkListgetLinkList