# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "GENIE3" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'GENIE3: GEne Network Inference with Ensemble of trees'
version: 1.27.0
doi: 10.1371/journal.pone.0012776
identifiers:
- type: doi
  value: 10.32614/CRAN.package.GENIE3
abstract: This package implements the GENIE3 algorithm for inferring gene regulatory
  networks from expression data.
authors:
- family-names: Huynh-Thu
  given-names: Van Anh
  email: vahuynh@uliege.be
- family-names: Huynh-Thu
  given-names: Van Anh
- family-names: Aibar
  given-names: Sara
- family-names: Geurts
  given-names: Pierre
preferred-citation:
  type: article
  title: Inferring regulatory networks from expression data using tree-based methods
  authors:
  - family-names: Huynh-Thu
    given-names: Van Anh
    email: vahuynh@uliege.be
  - family-names: Irrthum
    given-names: Alexandre
  - family-names: Wehenkel
    given-names: Louis
  - family-names: Geurts
    given-names: Pierre
  journal: PLoS ONE
  volume: '5'
  issue: '9'
  year: '2010'
  doi: 10.1371/journal.pone.0012776
  start: e12776
repository: https://bioc.r-universe.dev
commit: a693965663ca6a19a141a8a26c3da2a9cf71e4e6
date-released: '2022-04-05'
contact:
- family-names: Huynh-Thu
  given-names: Van Anh
  email: vahuynh@uliege.be
references:
- type: article
  title: 'SCENIC: Single-Cell Regulatory Network Inference And Clustering'
  authors:
  - family-names: Aibar
    given-names: Sara
  - family-names: Bravo Gonzalez-Blas
    given-names: Carmen
  - family-names: Moerman
    given-names: Thomas
  - family-names: Huynh-Thu
    given-names: Van Anh
  - family-names: Imrichova
    given-names: Hana
  - family-names: Hulselmans
    given-names: Gert
  - family-names: Rambow
    given-names: Florian
  - family-names: Marine
    given-names: Jean-Christophe
  - family-names: Geurts
    given-names: Pierre
  - family-names: Aerts
    given-names: Jan
  - family-names: Oord
    given-names: Joost
    name-particle: van den
  - family-names: Kalender Atak
    given-names: Zeynep
  - family-names: Wouters
    given-names: Jasper
  - family-names: Aerts
    given-names: Stein
  journal: Nature Methods
  year: '2017'
  doi: 10.1038/nmeth.4463
  volume: '14'
  start: 1083-1086