Package: zFPKM 1.35.0

Ron Ammar

zFPKM: A suite of functions to facilitate zFPKM transformations

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Authors:Ron Ammar [aut, cre], John Thompson [aut]

zFPKM_1.35.0.tar.gz
zFPKM_1.35.0.zip(r-4.7)zFPKM_1.35.0.zip(r-4.6)zFPKM_1.35.0.zip(r-4.5)
zFPKM_1.35.0.tgz(r-4.6-any)zFPKM_1.35.0.tgz(r-4.5-any)
zFPKM_1.35.0.tar.gz(r-4.7-any)zFPKM_1.35.0.tar.gz(r-4.6-any)
zFPKM_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
zFPKM/json (API)

# Install 'zFPKM' in R:

install.packages('zFPKM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ronammar/zfpkm/issues

On BioConductor:zFPKM-1.35.0(bioc 3.24)zFPKM-1.34.0(bioc 3.23)

immunooncology rnaseq featureextraction software geneexpression

6.18 score 9 stars 28 scripts 469 downloads 3 mentions 2 exports 47 dependencies

Last updated from:237460f7f7. Checks:8 NOTE, 2 OK. Indexed: yes.

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