Package: zFPKM 1.29.0

Ron Ammar

zFPKM: A suite of functions to facilitate zFPKM transformations

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Authors:Ron Ammar [aut, cre], John Thompson [aut]

zFPKM_1.29.0.tar.gz
zFPKM_1.29.0.zip(r-4.5)zFPKM_1.29.0.zip(r-4.4)zFPKM_1.29.0.zip(r-4.3)
zFPKM_1.29.0.tgz(r-4.4-any)zFPKM_1.29.0.tgz(r-4.3-any)
zFPKM_1.29.0.tar.gz(r-4.5-noble)zFPKM_1.29.0.tar.gz(r-4.4-noble)
zFPKM_1.29.0.tgz(r-4.4-emscripten)zFPKM_1.29.0.tgz(r-4.3-emscripten)
zFPKM.pdf |zFPKM.html✨
zFPKM/json (API)
NEWS

# Install 'zFPKM' in R:

install.packages('zFPKM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ronammar/zfpkm/issues

On BioConductor:zFPKM-1.29.0(bioc 3.21)zFPKM-1.28.0(bioc 3.20)

immunooncology rnaseq featureextraction software geneexpression

5.94 score 9 stars 16 scripts 372 downloads 3 mentions 2 exports 62 dependencies

Last updated 3 months agofrom:463b7d1473. Checks:1 OK, 6 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 17 2025
R-4.5-win	NOTE	Jan 17 2025
R-4.5-linux	NOTE	Jan 17 2025
R-4.4-win	NOTE	Jan 17 2025
R-4.4-mac	NOTE	Jan 17 2025
R-4.3-win	NOTE	Jan 17 2025
R-4.3-mac	NOTE	Jan 17 2025