Package: zFPKM 1.29.0

Ron Ammar

zFPKM: A suite of functions to facilitate zFPKM transformations

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Authors:Ron Ammar [aut, cre], John Thompson [aut]

zFPKM_1.29.0.tar.gz
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zFPKM_1.29.0.tgz(r-4.4-any)zFPKM_1.29.0.tgz(r-4.3-any)
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zFPKM.pdf |zFPKM.html✨
zFPKM/json (API)
NEWS

# Install 'zFPKM' in R:

install.packages('zFPKM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ronammar/zfpkm/issues

On BioConductor:zFPKM-1.29.0(bioc 3.21)zFPKM-1.28.0(bioc 3.20)

immunooncology rnaseq featureextraction software geneexpression

5.88 score 9 stars 14 scripts 349 downloads 3 mentions 2 exports 63 dependencies

Last updated 23 days agofrom:463b7d1473. Checks:OK: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 18 2024
R-4.5-win	WARNING	Nov 18 2024
R-4.5-linux	WARNING	Nov 18 2024
R-4.4-win	WARNING	Nov 18 2024
R-4.4-mac	WARNING	Nov 18 2024
R-4.3-win	WARNING	Nov 18 2024
R-4.3-mac	WARNING	Nov 18 2024