Package: zFPKM 1.27.0

Ron Ammar

zFPKM: A suite of functions to facilitate zFPKM transformations

Perform the zFPKM transform on RNA-seq FPKM data. This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to select expressed genes. Validated with encode open/closed chromosome data. Works well for gene level data using FPKM or TPM. Does not appear to calibrate well for transcript level data.

Authors:Ron Ammar [aut, cre], John Thompson [aut]

zFPKM_1.27.0.tar.gz
zFPKM_1.27.0.zip(r-4.5)zFPKM_1.27.0.zip(r-4.4)zFPKM_1.27.0.zip(r-4.3)
zFPKM_1.27.0.tgz(r-4.4-any)zFPKM_1.27.0.tgz(r-4.3-any)
zFPKM_1.27.0.tar.gz(r-4.5-noble)zFPKM_1.27.0.tar.gz(r-4.4-noble)
zFPKM_1.27.0.tgz(r-4.4-emscripten)zFPKM_1.27.0.tgz(r-4.3-emscripten)
zFPKM.pdf |zFPKM.html✨
zFPKM/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/ronammar/zfpkm/issues

On BioConductor:zFPKM-1.27.0(bioc 3.20)zFPKM-1.26.0(bioc 3.19)

bioconductor-package

2 exports 0.71 score 63 dependencies 3 mentions

Last updated 2 months agofrom:cd3941b8ea

Exports:zFPKMzFPKMPlot

Dependencies:abindaskpassbackportsBiobaseBiocGenericscheckmateclicolorspacecpp11crayoncurlDelayedArraydplyrfansifarvergenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehttrIRangesisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimemunsellnlmeopensslpillarpkgconfigpurrrR6RColorBrewerrlangS4ArraysS4VectorsscalesSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrsviridisLitewithrXVectorzlibbioc