Package: zFPKM
Title: A suite of functions to facilitate zFPKM transformations
Version: 1.35.0
Authors@R: c( person("Ron", "Ammar", role = c("aut", "cre"), email =
        "ron.ammar@bms.com"), person("John", "Thompson", role = "aut",
        email = "john.thompson@bms.com") )
Description: Perform the zFPKM transform on RNA-seq FPKM data. This
        algorithm is based on the publication by Hart et al., 2013
        (Pubmed ID 24215113). Reference recommends using zFPKM > -3 to
        select expressed genes. Validated with encode open/closed
        chromosome data. Works well for gene level data using FPKM or
        TPM. Does not appear to calibrate well for transcript level
        data.
License: GPL-3 | file LICENSE
URL: https://github.com/ronammar/zFPKM/
BugReports: https://github.com/ronammar/zFPKM/issues
Imports: checkmate, dplyr, ggplot2, tidyr, SummarizedExperiment
Suggests: knitr, limma, edgeR, GEOquery, stringr, printr, rmarkdown
VignetteBuilder: knitr
biocViews: ImmunoOncology, RNASeq, FeatureExtraction, Software,
        GeneExpression
Depends: R (>= 3.4.0)
RoxygenNote: 6.0.1
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:46:10 UTC
RemoteUrl: https://github.com/bioc/zFPKM
RemoteRef: HEAD
RemoteSha: 237460f7f7c1f51619590a58fbccb455efdae3d0
NeedsCompilation: no
Packaged: 2026-07-08 06:02:03 UTC; root
Author: Ron Ammar [aut, cre],
  John Thompson [aut]
Maintainer: Ron Ammar <ron.ammar@bms.com>