Introduction | Quickstart | Plotting Graphs, the simple way | Multiple plots on a graph | More fine grained control | Specifying Graph Colours | Installation and configuration details
Package: xmapbridge 1.71.0
Chris Wirth
xmapbridge: Export plotting files to the xmapBridge for visualisation in X:Map
xmapBridge can plot graphs in the X:Map genome browser. This package exports plotting files in a suitable format.
Authors:
xmapbridge_1.71.0.tar.gz
xmapbridge_1.71.0.zip(r-4.7)xmapbridge_1.71.0.zip(r-4.6)xmapbridge_1.71.0.zip(r-4.5)
xmapbridge_1.71.0.tgz(r-4.6-any)xmapbridge_1.71.0.tgz(r-4.5-any)
xmapbridge_1.71.0.tar.gz(r-4.7-any)xmapbridge_1.71.0.tar.gz(r-4.6-any)
xmapbridge_1.71.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
xmapbridge/json (API)
| # Install 'xmapbridge' in R: |
| install.packages('xmapbridge', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- exon.data - Sample exon array dataset
On BioConductor:xmapbridge-1.71.0(bioc 3.24)xmapbridge-1.70.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
annotationreportwritingvisualization
Last updated from:7748fb96c7. Checks:1 FAILURE, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | FAILURE | 131 | ||
| linux-devel-x86_64 | NOTE | 162 | ||
| source / vignettes | OK | 177 | ||
| linux-release-x86_64 | NOTE | 164 | ||
| macos-release-arm64 | NOTE | 84 | ||
| macos-oldrel-arm64 | NOTE | 107 | ||
| windows-devel | NOTE | 80 | ||
| windows-release | NOTE | 81 | ||
| windows-oldrel | NOTE | 86 | ||
| wasm-release | OK | 92 |
Exports:xmap.colxmap.debugxmap.graph.deletexmap.graph.listxmap.graph.loadxmap.graph.newxmap.graph.savexmap.plotxmap.plot.deletexmap.plot.listxmap.plot.loadxmap.plot.newxmap.plot.savexmap.pointsxmap.project.deletexmap.project.listxmap.project.loadxmap.project.newxmap.project.save
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Export plotting files to the xmapBridge for visualisation in X:Map | xmapbridge-package xmapbridge |
| Sample exon array dataset | exon.data |
| Generate a colour integer for the xmapBridge | xmap.col |
| Underlying xmap methods for manipulating projects, graphs, and plots | !=,Graph,Graph-method !=,Plot,Plot-method !=,Project,Project-method ==,Graph,Graph-method ==,Plot,Plot-method ==,Project,Project-method as.character,Graph-method as.character,Plot-method as.character,Project-method xmap.debug xmap.graph.delete xmap.graph.list xmap.graph.load xmap.graph.new xmap.graph.save xmap.plot.delete xmap.plot.list xmap.plot.load xmap.plot.new xmap.plot.save xmap.project.delete xmap.project.list xmap.project.load xmap.project.new xmap.project.save |
| Utility methods for quick graph generation | xmap.plot xmap.points |