Package: xmapbridge 1.65.0

Chris Wirth

xmapbridge: Export plotting files to the xmapBridge for visualisation in X:Map

xmapBridge can plot graphs in the X:Map genome browser. This package exports plotting files in a suitable format.

Authors:Tim Yates <[email protected]> and Crispin J Miller <[email protected]>

xmapbridge_1.65.0.tar.gz
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xmapbridge.pdf |xmapbridge.html✨
xmapbridge/json (API)

# Install 'xmapbridge' in R:
install.packages('xmapbridge', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:xmapbridge-1.65.0(bioc 3.21)xmapbridge-1.64.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

annotationreportwritingvisualization

3.30 score 325 downloads 1 mentions 19 exports 0 dependencies

Last updated 2 months agofrom:13dcfdee95. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-winNOTEDec 19 2024
R-4.5-linuxNOTEDec 19 2024
R-4.4-winNOTEDec 19 2024
R-4.4-macNOTEDec 19 2024
R-4.3-winNOTEDec 19 2024
R-4.3-macNOTEDec 19 2024

Exports:xmap.colxmap.debugxmap.graph.deletexmap.graph.listxmap.graph.loadxmap.graph.newxmap.graph.savexmap.plotxmap.plot.deletexmap.plot.listxmap.plot.loadxmap.plot.newxmap.plot.savexmap.pointsxmap.project.deletexmap.project.listxmap.project.loadxmap.project.newxmap.project.save

Dependencies:

xmapbridge primer

Rendered fromxmapbridge.Rnwusingutils::Sweaveon Dec 19 2024.

Last update: 2019-12-23
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Export plotting files to the xmapBridge for visualisation in X:Mapxmapbridge-package xmapbridge
Sample exon array datasetexon.data
Generate a colour integer for the xmapBridgexmap.col
Underlying xmap methods for manipulating projects, graphs, and plots!=,Graph,Graph-method !=,Plot,Plot-method !=,Project,Project-method ==,Graph,Graph-method ==,Plot,Plot-method ==,Project,Project-method as.character,Graph-method as.character,Plot-method as.character,Project-method xmap.debug xmap.graph.delete xmap.graph.list xmap.graph.load xmap.graph.new xmap.graph.save xmap.plot.delete xmap.plot.list xmap.plot.load xmap.plot.new xmap.plot.save xmap.project.delete xmap.project.list xmap.project.load xmap.project.new xmap.project.save
Utility methods for quick graph generationxmap.plot xmap.points