{ "_id": "6aca9001fe5cc25786e8b81c", "Package": "xmapbridge", "Type": "Package", "Title": "Export plotting files to the xmapBridge for visualisation in\nX:Map", "Version": "1.71.0", "Date": "2008-12-09", "Author": "Tim Yates and Crispin J\nMiller ", "Maintainer": "Chris Wirth ", "Description": "xmapBridge can plot graphs in the X:Map genome browser.\nThis package exports plotting files in a suitable format.", "License": "LGPL-3", "URL": "http://xmap.picr.man.ac.uk, http://www.bioconductor.org", "biocViews": "Annotation, ReportWriting, Visualization", "Collate": "zzz.R xmapbridge.R", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:33:28 UTC", "RemoteUrl": "https://github.com/bioc/xmapbridge", "RemoteRef": "HEAD", "RemoteSha": "7748fb96c7926b651660ad970f2997d52d119a4a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 17:53:16 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "xmapbridge_1.71.0.tar.gz", "_fileid": "https://r2.ropensci.org/3d4a23bc1104ff1e875a8958697181069cb41ab60b53d9fcc93e1e1c4051a844", "_filesize": 3149046, "_sha256": "3d4a23bc1104ff1e875a8958697181069cb41ab60b53d9fcc93e1e1c4051a844", "_expires": "2027-01-18T19:20:31.000Z", "_created": "2026-10-10T17:53:16.000Z", "_published": "2026-10-10T19:20:33.642Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 114275829134, "time": 114, "config": "bioc-checks", "r": "4.6.1", "check": "FAILURE", "artifact": "" }, { "job": 114275829156, "time": 116, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11678221013" }, { "job": 114275829247, "time": 138, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11677886587" }, { "job": 114275829173, "time": 86, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11678634428" }, { "job": 114275829129, "time": 115, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11680125702" }, { "job": 114275270321, "time": 170, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11678255820" }, { "job": 114275829138, "time": 82, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11678185992" }, { "job": 114275829184, "time": 73, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11678425573" }, { "job": 114275829131, "time": 66, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11677971299" }, { "job": 114275829155, "time": 60, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11677996261" } ], "_upstream": "https://github.com/bioc/xmapbridge", "_commit": { "id": "7748fb96c7926b651660ad970f2997d52d119a4a", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379608 }, "_maintainer": { "name": "Chris Wirth", "email": "christopher.wirth@cruk.manchester.ac.uk" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "RUnit", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.71.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.70.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "annotation", "reportwriting", "visualization" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 502, "source": "https://www.bioconductor.org/packages/stats/bioc/xmapbridge" }, "_mentions": 1, "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/xmapbridge.html" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "xmap.col", "xmap.debug", "xmap.graph.delete", "xmap.graph.list", "xmap.graph.load", "xmap.graph.new", "xmap.graph.save", "xmap.plot", "xmap.plot.delete", "xmap.plot.list", "xmap.plot.load", "xmap.plot.new", "xmap.plot.save", "xmap.points", "xmap.project.delete", "xmap.project.list", "xmap.project.load", "xmap.project.new", "xmap.project.save" ], "_datasets": [ { "name": "exon.data", "title": "Sample exon array dataset", "object": "xmapbridge", "file": "xmapbridge.rda", "class": [ "data.frame" ], "fields": [ "probeset_name", "ex1MCF7_r1.CEL", "ex1MCF7_r2.CEL", "ex1MCF7_r3.CEL", "ex2MCF10A_r1.CEL", "ex2MCF10A_r2.CEL", "ex2MCF10A_r3.CEL", "gene", "exon", "probeset_id", "num_probes", "idx", "hit_id", "seq_region_id", "name", "seq_region_start", "seq_region_end", "seq_region_strand" ], "rows": 8888, "table": true, "tojson": true } ], "_help": [ { "page": "xmapbridge-package", "title": "Export plotting files to the xmapBridge for visualisation in X:Map", "topics": [ "xmapbridge-package", "xmapbridge" ] }, { "page": "exon.data", "title": "Sample exon array dataset", "topics": [ "exon.data" ] }, { "page": "xmap.col", "title": "Generate a colour integer for the xmapBridge", "topics": [ "xmap.col" ] }, { "page": "xmap.files", "title": "Underlying xmap methods for manipulating projects, graphs, and plots", "topics": [ "!=,Graph,Graph-method", "!=,Plot,Plot-method", "!=,Project,Project-method", "==,Graph,Graph-method", "==,Plot,Plot-method", "==,Project,Project-method", "as.character,Graph-method", "as.character,Plot-method", "as.character,Project-method", "xmap.debug", "xmap.graph.delete", "xmap.graph.list", "xmap.graph.load", "xmap.graph.new", "xmap.graph.save", "xmap.plot.delete", "xmap.plot.list", "xmap.plot.load", "xmap.plot.new", "xmap.plot.save", "xmap.project.delete", "xmap.project.list", "xmap.project.load", "xmap.project.new", "xmap.project.save" ] }, { "page": "xmap.plot", "title": "Utility methods for quick graph generation", "topics": [ "xmap.plot", "xmap.points" ] } ], "_rundeps": [], "_vignettes": [ { "source": "xmapbridge.Rnw", "filename": "xmapbridge.pdf", "title": "xmapbridge primer", "engine": "utils::Sweave", "headings": [ "Introduction", "Quickstart", "Plotting Graphs, the simple way ", "Multiple plots on a graph", "More fine grained control", "Specifying Graph Colours", "Installation and configuration details" ], "created": "2013-11-01 20:05:58", "modified": "2019-12-23 23:07:32", "commits": 2 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "xmapbridge", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.71.0", "date": "2026-10-10T17:55:21.000Z", "distro": "resolute", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/d60ebc4a2aaaf791a8bab95ce12528380eaa3f7c050a029422647bbe6efdf437", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" }, { "r": "4.6.1", "os": "linux", "version": "1.71.0", "date": "2026-10-10T17:55:44.000Z", "distro": "resolute", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/4fa7006024bd735993834743d38cd27ca5ced3037113f8fed754ce6a95ae5739", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" }, { "r": "4.5.3", "os": "mac", "version": "1.71.0", "date": "2026-10-10T19:20:01.000Z", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/2b47cbbc85b48dcc41384648090075eb1b059c47465a105bcab24dcff89be7ef", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" }, { "r": "4.6.1", "os": "mac", "version": "1.71.0", "date": "2026-10-10T19:19:36.000Z", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/7f4ca992680ac223e6df9c06b1467d0d9c99c1fc07e1dde105e9c7fb5b24d774", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" }, { "r": "4.6.0", "os": "wasm", "version": "1.71.0", "date": "2026-10-10T17:55:01.000Z", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/e1f3e59e36bcef9d1a20d51f9eac80cf232b8a20c9cb716c1d5a2c7c127ffae0", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" }, { "r": "4.7.0", "os": "win", "version": "1.71.0", "date": "2026-10-10T17:54:32.000Z", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/7228b35922af6ded3a374484511b5452754c49c15ad5bdf7e03010b15b90a27b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" }, { "r": "4.5.3", "os": "win", "version": "1.71.0", "date": "2026-10-10T17:54:23.000Z", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/cac2a136f58766a7693d67df2ebfa28c2a8a51057b984346f50fa6e255083905", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" }, { "r": "4.6.1", "os": "win", "version": "1.71.0", "date": "2026-10-10T17:54:23.000Z", "commit": "7748fb96c7926b651660ad970f2997d52d119a4a", "fileid": "https://r2.ropensci.org/779225b273b8f2e7caf6932d6a1bf25c7fdd45f8e74eaf6700ad4f0847312a92", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38073380421" } ] }