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  "Type": "Package",
  "Title": "Export plotting files to the xmapBridge for visualisation in\nX:Map",
  "Version": "1.71.0",
  "Date": "2008-12-09",
  "Author": "Tim Yates <Tim.Yates@cruk.manchester.ac.uk> and Crispin J\nMiller <Crispin.Miller@cruk.manchester.ac.uk>",
  "Maintainer": "Chris Wirth <Christopher.Wirth@cruk.manchester.ac.uk>",
  "Description": "xmapBridge can plot graphs in the X:Map genome browser.\nThis package exports plotting files in a suitable format.",
  "License": "LGPL-3",
  "URL": "http://xmap.picr.man.ac.uk, http://www.bioconductor.org",
  "biocViews": "Annotation, ReportWriting, Visualization",
  "Collate": "zzz.R xmapbridge.R",
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  "Date/Publication": "2026-04-28 12:33:28 UTC",
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    "User": "root"
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    "type": "organization",
    "name": "Bioconductor",
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      "class": [
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      "table": true,
      "tojson": true
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  "_help": [
    {
      "page": "xmapbridge-package",
      "title": "Export plotting files to the xmapBridge for visualisation in X:Map",
      "topics": [
        "xmapbridge-package",
        "xmapbridge"
      ]
    },
    {
      "page": "exon.data",
      "title": "Sample exon array dataset",
      "topics": [
        "exon.data"
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    {
      "page": "xmap.col",
      "title": "Generate a colour integer for the xmapBridge",
      "topics": [
        "xmap.col"
      ]
    },
    {
      "page": "xmap.files",
      "title": "Underlying xmap methods for manipulating projects, graphs, and plots",
      "topics": [
        "!=,Graph,Graph-method",
        "!=,Plot,Plot-method",
        "!=,Project,Project-method",
        "==,Graph,Graph-method",
        "==,Plot,Plot-method",
        "==,Project,Project-method",
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        "xmap.project.load",
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    },
    {
      "page": "xmap.plot",
      "title": "Utility methods for quick graph generation",
      "topics": [
        "xmap.plot",
        "xmap.points"
      ]
    }
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      "source": "xmapbridge.Rnw",
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      "engine": "utils::Sweave",
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        "Quickstart",
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        "More fine grained control",
        "Specifying Graph Colours",
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      ],
      "created": "2013-11-01 20:05:58",
      "modified": "2019-12-23 23:07:32",
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