{
  "_id": "6ae77ad12e87f76f20acd465",
  "Package": "xmapbridge",
  "Type": "Package",
  "Title": "Export plotting files to the xmapBridge for visualisation in\nX:Map",
  "Version": "1.71.0",
  "Date": "2008-12-09",
  "Author": "Tim Yates <Tim.Yates@cruk.manchester.ac.uk> and Crispin J\nMiller <Crispin.Miller@cruk.manchester.ac.uk>",
  "Maintainer": "Chris Wirth <Christopher.Wirth@cruk.manchester.ac.uk>",
  "Description": "xmapBridge can plot graphs in the X:Map genome browser.\nThis package exports plotting files in a suitable format.",
  "License": "LGPL-3",
  "URL": "http://xmap.picr.man.ac.uk, http://www.bioconductor.org",
  "biocViews": "Annotation, ReportWriting, Visualization",
  "Collate": "zzz.R xmapbridge.R",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:28 UTC",
  "RemoteUrl": "https://github.com/bioc/xmapbridge",
  "RemoteRef": "HEAD",
  "RemoteSha": "7748fb96c7926b651660ad970f2997d52d119a4a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 14:25:28 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "xmapbridge_1.71.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/17c85fce538460fa084c83cd001798b8cae3dffc8fbf6e8bdaf07d3f330fa9bd",
  "_filesize": 3149504,
  "_sha256": "17c85fce538460fa084c83cd001798b8cae3dffc8fbf6e8bdaf07d3f330fa9bd",
  "_expires": "2027-02-09T17:45:51.000Z",
  "_created": "2026-11-01T14:25:28.000Z",
  "_published": "2026-11-01T17:45:53.382Z",
  "_upstream": "https://github.com/bioc/xmapbridge",
  "_status": "success",
  "_maintainer": {
    "name": "Chris Wirth",
    "email": "christopher.wirth@cruk.manchester.ac.uk"
  },
  "_jobs": [
    {
      "job": 124876560330,
      "time": 110,
      "config": "bioc-checks",
      "r": "4.6.2",
      "check": "FAILURE",
      "artifact": ""
    },
    {
      "job": 124876560336,
      "time": 188,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "13087991493"
    },
    {
      "job": 124876560380,
      "time": 182,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13088091234"
    },
    {
      "job": 124876560320,
      "time": 90,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "13093238200"
    },
    {
      "job": 124876560387,
      "time": 73,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13093559102"
    },
    {
      "job": 124870694035,
      "time": 154,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13087497290"
    },
    {
      "job": 124876560366,
      "time": 57,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13087632542"
    },
    {
      "job": 124876560411,
      "time": 69,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "13086973785"
    },
    {
      "job": 124876560354,
      "time": 69,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "13087592308"
    },
    {
      "job": 124876560460,
      "time": 63,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13087810740"
    }
  ],
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644",
  "_commit": {
    "id": "7748fb96c7926b651660ad970f2997d52d119a4a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379608
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.0",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "RColorBrewer",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.71.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.70.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "annotation",
    "reportwriting",
    "visualization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 482,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 582,
    "source": "https://www.bioconductor.org/packages/stats/bioc/xmapbridge"
  },
  "_mentions": 1,
  "_searchresults": 5,
  "_abi": {
    "exports": [
      {
        "key": "xmapbridge::Graph",
        "hash": "d77396e10bded36e"
      },
      {
        "key": "xmapbridge::Plot",
        "hash": "3c49015f131a1fa2"
      },
      {
        "key": "xmapbridge::Project",
        "hash": "8c9ac986c871402c"
      },
      {
        "key": "xmapbridge::generic:xmap.graph.folder",
        "hash": "1f9b6635c6002ecd"
      },
      {
        "key": "xmapbridge::generic:xmap.graph.minx",
        "hash": "7ff23b3eb4e31f61"
      },
      {
        "key": "xmapbridge::generic:xmap.plot.file",
        "hash": "236da2562925b960"
      },
      {
        "key": "xmapbridge::generic:xmap.project.folder",
        "hash": "ff0530b51fa34355"
      }
    ],
    "imports": []
  },
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/xmapbridge.html"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "xmap.col",
    "xmap.debug",
    "xmap.graph.delete",
    "xmap.graph.list",
    "xmap.graph.load",
    "xmap.graph.new",
    "xmap.graph.save",
    "xmap.plot",
    "xmap.plot.delete",
    "xmap.plot.list",
    "xmap.plot.load",
    "xmap.plot.new",
    "xmap.plot.save",
    "xmap.points",
    "xmap.project.delete",
    "xmap.project.list",
    "xmap.project.load",
    "xmap.project.new",
    "xmap.project.save"
  ],
  "_datasets": [
    {
      "name": "exon.data",
      "title": "Sample exon array dataset",
      "object": "xmapbridge",
      "file": "xmapbridge.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "probeset_name",
        "ex1MCF7_r1.CEL",
        "ex1MCF7_r2.CEL",
        "ex1MCF7_r3.CEL",
        "ex2MCF10A_r1.CEL",
        "ex2MCF10A_r2.CEL",
        "ex2MCF10A_r3.CEL",
        "gene",
        "exon",
        "probeset_id",
        "num_probes",
        "idx",
        "hit_id",
        "seq_region_id",
        "name",
        "seq_region_start",
        "seq_region_end",
        "seq_region_strand"
      ],
      "rows": 8888,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "xmapbridge-package",
      "title": "Export plotting files to the xmapBridge for visualisation in X:Map",
      "topics": [
        "xmapbridge-package",
        "xmapbridge"
      ]
    },
    {
      "page": "exon.data",
      "title": "Sample exon array dataset",
      "topics": [
        "exon.data"
      ]
    },
    {
      "page": "xmap.col",
      "title": "Generate a colour integer for the xmapBridge",
      "topics": [
        "xmap.col"
      ]
    },
    {
      "page": "xmap.files",
      "title": "Underlying xmap methods for manipulating projects, graphs, and plots",
      "topics": [
        "!=,Graph,Graph-method",
        "!=,Plot,Plot-method",
        "!=,Project,Project-method",
        "==,Graph,Graph-method",
        "==,Plot,Plot-method",
        "==,Project,Project-method",
        "as.character,Graph-method",
        "as.character,Plot-method",
        "as.character,Project-method",
        "xmap.debug",
        "xmap.graph.delete",
        "xmap.graph.list",
        "xmap.graph.load",
        "xmap.graph.new",
        "xmap.graph.save",
        "xmap.plot.delete",
        "xmap.plot.list",
        "xmap.plot.load",
        "xmap.plot.new",
        "xmap.plot.save",
        "xmap.project.delete",
        "xmap.project.list",
        "xmap.project.load",
        "xmap.project.new",
        "xmap.project.save"
      ]
    },
    {
      "page": "xmap.plot",
      "title": "Utility methods for quick graph generation",
      "topics": [
        "xmap.plot",
        "xmap.points"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "xmapbridge.Rnw",
      "filename": "xmapbridge.pdf",
      "title": "xmapbridge primer",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "Quickstart",
        "Plotting Graphs, the simple way ",
        "Multiple plots on a graph",
        "More fine grained control",
        "Specifying Graph Colours",
        "Installation and configuration details"
      ],
      "created": "2013-11-01 20:05:58",
      "modified": "2019-12-23 23:07:32",
      "commits": 2
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "xmapbridge",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.71.0",
      "date": "2026-11-01T14:41:14.000Z",
      "distro": "resolute",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/b9ffdca636b573bc49b42ec11734b7a33f9167fa7064dc642bd3194cc6bf884b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "1.71.0",
      "date": "2026-11-01T14:41:10.000Z",
      "distro": "resolute",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/aee2d26d9c99220554d80d67302460c8203943b41d79b6d75f487d32f5172b80",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.71.0",
      "date": "2026-11-01T17:39:26.000Z",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/bef3640ccf98f973e4c17c89f985d09fa27ae6c3c17202b20666fba08818b8a4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.71.0",
      "date": "2026-11-01T17:39:10.000Z",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/21435fc9e593e81fc4f7e6ed5c9314f4b2f6f1bad918e6249ef212b6d9cd9ab7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.71.0",
      "date": "2026-11-01T14:39:17.000Z",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/1df884a3862c0110f8b048bca0b80f9f74c2c4f38a9601c496f9669e4a13e117",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.71.0",
      "date": "2026-11-01T14:27:49.000Z",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/2df3ca2a67bd9a06ef7ae9f1d31e14e6756188281cc04eba0f04d40b9427dc67",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.71.0",
      "date": "2026-11-01T14:27:54.000Z",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/3047ce378c83e776eed8dba03d786b9c2eb52db69776f9a6c4419c55542caaf5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.71.0",
      "date": "2026-11-01T14:27:47.000Z",
      "commit": "7748fb96c7926b651660ad970f2997d52d119a4a",
      "fileid": "https://r2.ropensci.org/e0648aa5e290836f3575dc1c4cf4edf186d819054c840526da9491ec18bc1400",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41311028644"
    }
  ]
}