Package: wpm 1.17.0

Helene Borges

wpm: Well Plate Maker

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Authors:Helene Borges [aut, cre], Thomas Burger [aut]

wpm_1.17.0.tar.gz
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wpm_1.17.0.tgz(r-4.4-any)wpm_1.17.0.tgz(r-4.3-any)
wpm_1.17.0.tar.gz(r-4.5-noble)wpm_1.17.0.tar.gz(r-4.4-noble)
wpm_1.17.0.tgz(r-4.4-emscripten)wpm_1.17.0.tgz(r-4.3-emscripten)
wpm.pdf |wpm.html✨
wpm/json (API)
NEWS

# Install 'wpm' in R:
install.packages('wpm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/helbor/wpm/issues

Datasets:
  • data_test - Fictitious clinical data for demonstration.

On BioConductor:wpm-1.17.0(bioc 3.21)wpm-1.16.0(bioc 3.20)

guiproteomicsmassspectrometrybatcheffectexperimentaldesign

4.78 score 6 stars 7 scripts 164 downloads 7 exports 97 dependencies

Last updated 3 months agofrom:a7416488ee. Checks:1 OK, 3 NOTE, 3 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKDec 30 2024
R-4.5-winERRORDec 30 2024
R-4.5-linuxNOTEDec 30 2024
R-4.4-winERRORDec 30 2024
R-4.4-macNOTEDec 30 2024
R-4.3-winERRORDec 30 2024
R-4.3-macNOTEDec 30 2024

Exports:convertCSVconvertESetconvertSEconvertVector2DfdrawMapwpmwrapperWPM

Dependencies:abindaskpassattemptbase64encBiobaseBiocGenericsbslibcachemclicolorspacecommonmarkconfigcrayoncrosstalkcurlDelayedArraydigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegolemgtableherehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecycleloggingmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpromisesR6rappdirsRColorBrewerRcpprlangrmarkdownrprojrootS4ArraysS4VectorssassscalesshinyshinycustomloadershinydashboardshinyWidgetssourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunxtableXVectoryaml

How to use Well Plate Maker

Helene Borges

Rendered fromwpm_vignette.Rmdusingknitr::rmarkdownon Dec 30 2024.

Last update: 2021-03-17
Started: 2020-04-29