Package: wpm 1.17.0

Helene Borges

wpm: Well Plate Maker

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Authors:Helene Borges [aut, cre], Thomas Burger [aut]

wpm_1.17.0.tar.gz
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wpm_1.17.0.tar.gz(r-4.5-noble)wpm_1.17.0.tar.gz(r-4.4-noble)
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wpm.pdf |wpm.html✨
wpm/json (API)
NEWS

# Install 'wpm' in R:
install.packages('wpm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helbor/wpm/issues

Datasets:
  • data_test - Fictitious clinical data for demonstration.

On BioConductor:wpm-1.17.0(bioc 3.21)wpm-1.16.0(bioc 3.20)

guiproteomicsmassspectrometrybatcheffectexperimentaldesign

4.78 score 6 stars 7 scripts 236 downloads 7 exports 97 dependencies

Last updated 5 months agofrom:a7416488ee. Checks:1 OK, 6 NOTE, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 28 2025
R-4.5-winNOTEMar 28 2025
R-4.5-macNOTEMar 28 2025
R-4.5-linuxNOTEMar 28 2025
R-4.4-winERRORMar 28 2025
R-4.4-macNOTEMar 28 2025
R-4.4-linuxNOTEMar 28 2025
R-4.3-winERRORMar 28 2025
R-4.3-macNOTEMar 28 2025

Exports:convertCSVconvertESetconvertSEconvertVector2DfdrawMapwpmwrapperWPM

Dependencies:abindaskpassattemptbase64encBiobaseBiocGenericsbslibcachemclicolorspacecommonmarkconfigcrayoncrosstalkcurlDelayedArraydigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegolemgtableherehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecycleloggingmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpromisesR6rappdirsRColorBrewerRcpprlangrmarkdownrprojrootS4ArraysS4VectorssassscalesshinyshinycustomloadershinydashboardshinyWidgetssourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunxtableXVectoryaml

How to use Well Plate Maker

Helene Borges

Rendered fromwpm_vignette.Rmdusingknitr::rmarkdownon Mar 28 2025.

Last update: 2021-03-17
Started: 2020-04-29