Package: wpm 1.17.0

Helene Borges

wpm: Well Plate Maker

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Authors:Helene Borges [aut, cre], Thomas Burger [aut]

wpm_1.17.0.tar.gz
wpm_1.17.0.zip(r-4.5)wpm_1.17.0.zip(r-4.4)wpm_1.17.0.zip(r-4.3)
wpm_1.17.0.tgz(r-4.4-any)wpm_1.17.0.tgz(r-4.3-any)
wpm_1.17.0.tar.gz(r-4.5-noble)wpm_1.17.0.tar.gz(r-4.4-noble)
wpm_1.17.0.tgz(r-4.4-emscripten)wpm_1.17.0.tgz(r-4.3-emscripten)
wpm.pdf |wpm.html✨
wpm/json (API)
NEWS

# Install 'wpm' in R:
install.packages('wpm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/helbor/wpm/issues

Datasets:
  • data_test - Fictitious clinical data for demonstration.

On BioConductor:wpm-1.17.0(bioc 3.21)wpm-1.16.0(bioc 3.20)

guiproteomicsmassspectrometrybatcheffectexperimentaldesign

4.70 score 5 stars 7 scripts 164 downloads 7 exports 98 dependencies

Last updated 23 days agofrom:a7416488ee. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winNOTEOct 31 2024
R-4.5-linuxNOTEOct 31 2024
R-4.4-winNOTEOct 31 2024
R-4.4-macNOTEOct 31 2024
R-4.3-winNOTEOct 31 2024
R-4.3-macNOTEOct 31 2024

Exports:convertCSVconvertESetconvertSEconvertVector2DfdrawMapwpmwrapperWPM

Dependencies:abindaskpassattemptbase64encBiobaseBiocGenericsbslibcachemclicolorspacecommonmarkconfigcrayoncrosstalkcurlDelayedArraydigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegolemgtableherehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecycleloggingmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpromisesR6rappdirsRColorBrewerRcpprlangrmarkdownrprojrootS4ArraysS4VectorssassscalesshinyshinycustomloadershinydashboardshinyWidgetssourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunxtableXVectoryamlzlibbioc

How to use Well Plate Maker

Helene Borges

Rendered fromwpm_vignette.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2021-03-17
Started: 2020-04-29