Package: wpm 1.23.0

Helene Borges

wpm: Well Plate Maker

The Well-Plate Maker (WPM) is a shiny application deployed as an R package. Functions for a command-line/script use are also available. The WPM allows users to generate well plate maps to carry out their experiments while improving the handling of batch effects. In particular, it helps controlling the "plate effect" thanks to its ability to randomize samples over multiple well plates. The algorithm for placing the samples is inspired by the backtracking algorithm: the samples are placed at random while respecting specific spatial constraints.

Authors:Helene Borges [aut, cre], Thomas Burger [aut]

wpm_1.23.0.tar.gz
wpm_1.23.0.zip(r-4.7)wpm_1.23.0.zip(r-4.6)wpm_1.23.0.zip(r-4.5)
wpm_1.23.0.tgz(r-4.6-any)wpm_1.23.0.tgz(r-4.5-any)
wpm_1.23.0.tar.gz(r-4.7-any)wpm_1.23.0.tar.gz(r-4.6-any)
wpm_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
wpm/json (API)
NEWS

# Install 'wpm' in R:
install.packages('wpm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/helbor/wpm/issues

Datasets:
  • data_test - Fictitious clinical data for demonstration.

On BioConductor:wpm-1.23.0(bioc 3.24)wpm-1.22.0(bioc 3.23)

guiproteomicsmassspectrometrybatcheffectexperimentaldesign

4.78 score 6 stars 10 scripts 342 downloads 7 exports 86 dependencies

Last updated from:46b4d1a203. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE183
linux-devel-x86_64NOTE224
source / vignettesOK246
linux-release-x86_64NOTE259
macos-release-arm64NOTE123
macos-oldrel-arm64NOTE127
windows-develNOTE133
windows-releaseNOTE134
windows-oldrelNOTE126
wasm-releaseOK161

Exports:convertCSVconvertESetconvertSEconvertVector2DfdrawMapwpmwrapperWPM

Dependencies:abindattemptbase64encBiobaseBiocGenericsbslibcachemclicommonmarkconfigcpp11crosstalkDelayedArraydigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsGenomicRangesggplot2gluegolemgtableherehighrhtmltoolshtmlwidgetshttpuvIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecycleloggingmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeotelpillarpkgconfigpromisesR6rappdirsRColorBrewerRcpprlangrmarkdownrprojrootS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinycustomloadershinydashboardshinyWidgetssourcetoolsSparseArraystringistringrSummarizedExperimenttibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml

How to use Well Plate Maker

Helene Borges

Rendered fromwpm_vignette.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2021-03-17
Started: 2020-04-29