NEWS

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wpm 1.1.9

• add publication reference

wpm 1.1.7

• documented the demo dataset "data_test"

wpm 1.1.6

• A demo dataset is now available to test the WPM shiny app.
• Update of some images of the vignette.
• Visual changes in the app (colors, blocks).
• Update of the Help tab of the application, following the revision of the vignette.

wpm 1.1.5

• Vignette tutorial revised.

wpm 1.1.4

• The project title is now a mandatory parameter.
• The mod_project_title module was created in order to more easily manage the "project title" block.
• Data export: Now the project title and the date are also used to generate the file names of the dataset and graphics created by WPM. Project title is also added to IDs' samples in the final dataframe.
• README for GitHub revised.

wpm 1.1.3

• fix typo in Parameters panel of shiny app.

wpm 1.1.2

• delete the port option set to default 8000 in wpm function. Now uses the random port used by the runApp function to avoid port conflicts with other applications.

wpm 1.1.1

• add URLs and BugReports tags in DESCRIPTION file

wpm 0.99.14

• corrections for Bioconductor release version 3.11

wpm 0.99.13

• Added a zzz.R file for the welcome message when loading the package in an R session
• Corrections in package vignette and Help tab of the shiny app
• Revised all documentation of functions

wpm 0.99.12

• fixed the lack of display of images in the help tab
• fixed inconsistencies regarding the setting of quotes when importing data
• added an infobox for plate dimensions compatibility with the number of samples

wpm 0.99.11

• fixed issue #10
• fixed issue #22
• changed the display of the datatable in the Results tab
• updated Vignette and Help page about toy dataset (CSV section)

wpm 0.99.10

• corrected unit tests for CSV import
• corrected README R commands for convertCSV section
• corrected Help tab for the upload file section
• corrected the Parameters section in the Vignette

wpm 0.99.9 (2020-06-18)

• Resolved crashes regarding bad settings when importing CSV
• Parameter sections are now collapsible
• created module for number of iterations
• defined the launch for the browser on port 8000
• changed the order of CSV import section in the parameters Panel
• some upload parameters are now available only if the CSV file is correctly imported
• added preview of CSV file when importing in the UI

wpm 0.99.8 (2020-06-11)

• Modified structure of the Home tab in the shiny application
• Added new module for the help tab.
• Created the help.md file for the Help tab of the app.
• Added CSS for tables, and images.
• Changed the "blank" word to "buffer" throughout the package.
• Changed the "not random" term to "fixed" throughout the package.
• Updated images and text in the tutorial vignette.

wpm 0.99.7 (2020-06-05)

• Added the convertSE function to manage SummarizedExperiments objects in command line version
• Added the grouping factor option for data import (managed for both shiny app and command line). Now the user can specify the column name corresponding to the grouping factor wpm has to use for backtracking.
• Modified app_ui structure regarding the project title input
• Updated the tutorial vignette's content
• Updated README file
• Revised unit tests for import functions
• The WPM package version output in Home panel is now obtained with packageVersion()
• Created a new module for the integration of markdown files in the shiny application.

wpm 0.99.6 (2020-06-02)

• Added function checkWpmInputs to control the correct use of the wrapperWpm function (command line use).
• Updated the README file and the tutorial vignette explaining how to use WPM using command line.

wpm 0.99.5 (2020-06-02)

• Added functions for importing CSV files and ExpressionSet / MSnSet objects
• Added the wrapper function allowing to use wpm in command line
• Added support for eSet and MSnSet objects as input of the wrapper function
• Added unit tests for import functions

wpm 0.99.4 (2020-05-28)

• Fix the TIMEOUT error during R CMD CHECK

wpm 0.99.3 (2020-05-28)

• All the R code is now in the /R directory.
• Modified R code structure by creating additional modules:
  • mod_home, fusion between the Home panel and the Help Panel
  • mod_data_export, a specific module for data export
  • mod_plate_dimensions
  • mod_special_wells, mainly to avoid code redundancy and gain readability
• Added unit test for the convertVector2Df function
• Added Rd examples for convertVector2Df and drawMap functions

wpm 0.99.2

• Added a NEWS.md file to track changes to the package
• Modified code and files structure of the package
• Added Roxygen comments to functions