Package: tuberculosis 1.19.0

Lucas Schiffer

tuberculosis: Tuberculosis Gene Expression Data for Machine Learning

The tuberculosis R/Bioconductor package features tuberculosis gene expression data for machine learning. All human samples from GEO that did not come from cell lines, were not taken postmortem, and did not feature recombination have been included. The package has more than 10,000 samples from both microarray and sequencing studies that have been processed from raw data through a hyper-standardized, reproducible pipeline.

Authors:Lucas Schiffer [aut, cre]

tuberculosis_1.19.0.tar.gz
tuberculosis_1.19.0.tar.gz(r-4.7-any)tuberculosis_1.19.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tuberculosis/json (API)

# Install 'tuberculosis' in R:

install.packages('tuberculosis', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/schifferl/tuberculosis/issues

On BioConductor:tuberculosis-1.19.0(data/experiment 3.24)tuberculosis-1.18.0(data/experiment 3.23)

experimenthub expressiondata homo_sapiens_data microarraydata sequencingdata reproducibleresearch bioconductor bioconductor-package datapkg

5.26 score 4 stars 4 scripts 1 exports 67 dependencies

Last updated from:2cdbcd34f7. Checks:1 NOTE, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	158
linux-devel	OK	329
source / vignettes	OK	301
linux-release	OK	364

Exports:tuberculosis

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Arrays S4Vectors Seqinfo SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

tuberculosis

Rendered fromtuberculosis.Rmdusingknitr::rmarkdown

Last update: 2025-10-07
Started: 2021-10-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
find/get tuberculosis gene expression data	tuberculosis